Please cite the following papers:
When SAM_T08 finishes loading, you should see links to
You may also view the list of files created so far. This link gives access to the full directory of file produced, including query progress logs, and this html file (summary.html). When the process is finished, you may want to download the entire directory to your computer, using a tool such as "wget".
Description | Link to file | Date |
Inputs |
Submitted sequence(s) | T0391.a2m | 2008 May 7 9:54:36 |
README file | README | 2008 May 7 9:54:35 |
Provided documentation | T0391.doc.html | 2008 May 7 9:54:37 |
Quick blastp of non-redundant PDB | T0391.pdb_blast.txt | 2008 May 7 9:54:39 |
Multiple alignment |
SAM_t06 multiple alignment in a2m format | T0391.t06.a2m.gz | 2008 May 7 10:15:56 |
SAM_t06 multiple alignment in pretty html format | T0391.t06.pa.html | 2008 May 7 10:17:32 |
SAM_t06 target hidden Markov model | T0391.t06.w0.5.mod | 2008 May 7 10:17:37 |
SAM_t06 multiple alignment---sequence logo (eps format) (pdf format) | T0391.t06.w0.5-logo | 2008 May 7 10:17:46 |
SAM_t06 consensus sequence | T0391.t06.w0.5.maxp | 2008 May 7 10:17:46 |
Script for highlighting in rasmol | conserved_t06 | 2008 May 7 10:17:47 |
SAM_t04 multiple alignment in a2m format | T0391.t04.a2m.gz | 2008 May 7 10:36:04 |
SAM_t04 multiple alignment in pretty html format | T0391.t04.pa.html | 2008 May 7 10:36:31 |
SAM_t04 target hidden Markov model | T0391.t04.w0.5.mod | 2008 May 7 10:36:34 |
SAM_t04 multiple alignment---sequence logo (eps format) (pdf format) | T0391.t04.w0.5-logo | 2008 May 7 10:36:41 |
SAM_t04 consensus sequence | T0391.t04.w0.5.maxp | 2008 May 7 10:36:41 |
Script for highlighting in rasmol | conserved_t04 | 2008 May 7 10:36:41 |
SAM_t2k multiple alignment in a2m format | T0391.t2k.a2m.gz | 2008 May 7 10:42:00 |
SAM_t2k multiple alignment in pretty html format | T0391.t2k.pa.html | 2008 May 7 10:42:13 |
SAM_t2k target hidden Markov model | T0391.t2k.w0.5.mod | 2008 May 7 10:42:14 |
SAM_t2k multiple alignment---sequence logo (eps format) (pdf format) | T0391.t2k.w0.5-logo | 2008 May 7 10:42:17 |
SAM_t2k consensus sequence | T0391.t2k.w0.5.maxp | 2008 May 7 10:42:17 |
Script for highlighting in rasmol | conserved_t2k | 2008 May 7 10:42:17 |
Secondary Structure Prediction (Explanation of secondary-structure predictions) |
str4 structure prediction (rdb format) (seq format) | T0391.t06.str4 | 2008 May 7 10:42:20 |
Script for T0391.t06.str4 coloring in rasmol | T0391.t06.str4-color.rasmol | 2008 May 7 10:42:20 |
str4---sequence logo (eps format) (pdf format) | T0391.t06.str4-logo | 2008 May 7 10:42:22 |
str4 structure prediction (rdb format) (seq format) | T0391.t04.str4 | 2008 May 7 10:42:23 |
Script for T0391.t04.str4 coloring in rasmol | T0391.t04.str4-color.rasmol | 2008 May 7 10:42:24 |
str4---sequence logo (eps format) (pdf format) | T0391.t04.str4-logo | 2008 May 7 10:42:26 |
str4 structure prediction (rdb format) (seq format) | T0391.t2k.str4 | 2008 May 7 10:42:26 |
Script for T0391.t2k.str4 coloring in rasmol | T0391.t2k.str4-color.rasmol | 2008 May 7 10:42:26 |
str4---sequence logo (eps format) (pdf format) | T0391.t2k.str4-logo | 2008 May 7 10:42:28 |
str2 structure prediction (rdb format) (seq format) | T0391.t06.str2 | 2008 May 7 10:17:44 |
Script for T0391.t06.str2 coloring in rasmol | T0391.t06.str2-color.rasmol | 2008 May 7 10:42:29 |
str2---sequence logo (eps format) (pdf format) | T0391.t06.str2-logo | 2008 May 7 10:42:31 |
str2 structure prediction (rdb format) (seq format) | T0391.t04.str2 | 2008 May 7 10:36:39 |
Script for T0391.t04.str2 coloring in rasmol | T0391.t04.str2-color.rasmol | 2008 May 7 10:42:31 |
str2---sequence logo (eps format) (pdf format) | T0391.t04.str2-logo | 2008 May 7 10:42:33 |
str2 structure prediction (rdb format) (seq format) | T0391.t2k.str2 | 2008 May 7 10:42:15 |
Script for T0391.t2k.str2 coloring in rasmol | T0391.t2k.str2-color.rasmol | 2008 May 7 10:42:33 |
str2---sequence logo (eps format) (pdf format) | T0391.t2k.str2-logo | 2008 May 7 10:42:35 |
alpha structure prediction (rdb format) (seq format) | T0391.t06.alpha | 2008 May 7 10:42:37 |
Script for T0391.t06.alpha coloring in rasmol | T0391.t06.alpha-color.rasmol | 2008 May 7 10:42:37 |
alpha---sequence logo (eps format) (pdf format) | T0391.t06.alpha-logo | 2008 May 7 10:42:39 |
alpha structure prediction (rdb format) (seq format) | T0391.t04.alpha | 2008 May 7 10:42:40 |
Script for T0391.t04.alpha coloring in rasmol | T0391.t04.alpha-color.rasmol | 2008 May 7 10:42:40 |
alpha---sequence logo (eps format) (pdf format) | T0391.t04.alpha-logo | 2008 May 7 10:42:42 |
alpha structure prediction (rdb format) (seq format) | T0391.t2k.alpha | 2008 May 7 10:42:43 |
Script for T0391.t2k.alpha coloring in rasmol | T0391.t2k.alpha-color.rasmol | 2008 May 7 10:42:43 |
alpha---sequence logo (eps format) (pdf format) | T0391.t2k.alpha-logo | 2008 May 7 10:42:45 |
bys structure prediction (rdb format) (seq format) | T0391.t06.bys | 2008 May 7 10:42:46 |
Script for T0391.t06.bys coloring in rasmol | T0391.t06.bys-color.rasmol | 2008 May 7 10:42:46 |
bys---sequence logo (eps format) (pdf format) | T0391.t06.bys-logo | 2008 May 7 10:42:48 |
bys structure prediction (rdb format) (seq format) | T0391.t04.bys | 2008 May 7 10:42:50 |
Script for T0391.t04.bys coloring in rasmol | T0391.t04.bys-color.rasmol | 2008 May 7 10:42:50 |
bys---sequence logo (eps format) (pdf format) | T0391.t04.bys-logo | 2008 May 7 10:42:52 |
bys structure prediction (rdb format) (seq format) | T0391.t2k.bys | 2008 May 7 10:42:52 |
Script for T0391.t2k.bys coloring in rasmol | T0391.t2k.bys-color.rasmol | 2008 May 7 10:42:52 |
bys---sequence logo (eps format) (pdf format) | T0391.t2k.bys-logo | 2008 May 7 10:42:54 |
pb structure prediction (rdb format) (seq format) | T0391.t06.pb | 2008 May 7 10:42:56 |
Script for T0391.t06.pb coloring in rasmol | T0391.t06.pb-color.rasmol | 2008 May 7 10:42:56 |
pb---sequence logo (eps format) (pdf format) | T0391.t06.pb-logo | 2008 May 7 10:42:58 |
pb structure prediction (rdb format) (seq format) | T0391.t04.pb | 2008 May 7 10:42:59 |
Script for T0391.t04.pb coloring in rasmol | T0391.t04.pb-color.rasmol | 2008 May 7 10:42:59 |
pb---sequence logo (eps format) (pdf format) | T0391.t04.pb-logo | 2008 May 7 10:43:01 |
pb structure prediction (rdb format) (seq format) | T0391.t2k.pb | 2008 May 7 10:43:02 |
Script for T0391.t2k.pb coloring in rasmol | T0391.t2k.pb-color.rasmol | 2008 May 7 10:43:02 |
pb---sequence logo (eps format) (pdf format) | T0391.t2k.pb-logo | 2008 May 7 10:43:04 |
n_notor2 structure prediction (rdb format) (seq format) | T0391.t06.n_notor2 | 2008 May 7 10:43:06 |
Script for T0391.t06.n_notor2 coloring in rasmol | T0391.t06.n_notor2-color.rasmol | 2008 May 7 10:43:06 |
n_notor2---sequence logo (eps format) (pdf format) | T0391.t06.n_notor2-logo | 2008 May 7 10:43:08 |
n_notor2 structure prediction (rdb format) (seq format) | T0391.t04.n_notor2 | 2008 May 7 10:43:09 |
Script for T0391.t04.n_notor2 coloring in rasmol | T0391.t04.n_notor2-color.rasmol | 2008 May 7 10:43:09 |
n_notor2---sequence logo (eps format) (pdf format) | T0391.t04.n_notor2-logo | 2008 May 7 10:43:11 |
n_notor2 structure prediction (rdb format) (seq format) | T0391.t2k.n_notor2 | 2008 May 7 10:43:12 |
Script for T0391.t2k.n_notor2 coloring in rasmol | T0391.t2k.n_notor2-color.rasmol | 2008 May 7 10:43:12 |
n_notor2---sequence logo (eps format) (pdf format) | T0391.t2k.n_notor2-logo | 2008 May 7 10:43:14 |
n_notor structure prediction (rdb format) (seq format) | T0391.t06.n_notor | 2008 May 7 10:43:15 |
Script for T0391.t06.n_notor coloring in rasmol | T0391.t06.n_notor-color.rasmol | 2008 May 7 10:43:15 |
n_notor---sequence logo (eps format) (pdf format) | T0391.t06.n_notor-logo | 2008 May 7 10:43:17 |
n_notor structure prediction (rdb format) (seq format) | T0391.t04.n_notor | 2008 May 7 10:43:18 |
Script for T0391.t04.n_notor coloring in rasmol | T0391.t04.n_notor-color.rasmol | 2008 May 7 10:43:19 |
n_notor---sequence logo (eps format) (pdf format) | T0391.t04.n_notor-logo | 2008 May 7 10:43:20 |
n_notor structure prediction (rdb format) (seq format) | T0391.t2k.n_notor | 2008 May 7 10:43:21 |
Script for T0391.t2k.n_notor coloring in rasmol | T0391.t2k.n_notor-color.rasmol | 2008 May 7 10:43:21 |
n_notor---sequence logo (eps format) (pdf format) | T0391.t2k.n_notor-logo | 2008 May 7 10:43:23 |
n_sep structure prediction (rdb format) (seq format) | T0391.t06.n_sep | 2008 May 7 10:43:25 |
Script for T0391.t06.n_sep coloring in rasmol | T0391.t06.n_sep-color.rasmol | 2008 May 7 10:43:25 |
n_sep---sequence logo (eps format) (pdf format) | T0391.t06.n_sep-logo | 2008 May 7 10:43:27 |
n_sep structure prediction (rdb format) (seq format) | T0391.t04.n_sep | 2008 May 7 10:43:28 |
Script for T0391.t04.n_sep coloring in rasmol | T0391.t04.n_sep-color.rasmol | 2008 May 7 10:43:28 |
n_sep---sequence logo (eps format) (pdf format) | T0391.t04.n_sep-logo | 2008 May 7 10:43:30 |
n_sep structure prediction (rdb format) (seq format) | T0391.t2k.n_sep | 2008 May 7 10:43:31 |
Script for T0391.t2k.n_sep coloring in rasmol | T0391.t2k.n_sep-color.rasmol | 2008 May 7 10:43:31 |
n_sep---sequence logo (eps format) (pdf format) | T0391.t2k.n_sep-logo | 2008 May 7 10:43:33 |
o_notor2 structure prediction (rdb format) (seq format) | T0391.t06.o_notor2 | 2008 May 7 10:43:34 |
Script for T0391.t06.o_notor2 coloring in rasmol | T0391.t06.o_notor2-color.rasmol | 2008 May 7 10:43:35 |
o_notor2---sequence logo (eps format) (pdf format) | T0391.t06.o_notor2-logo | 2008 May 7 10:43:36 |
o_notor2 structure prediction (rdb format) (seq format) | T0391.t04.o_notor2 | 2008 May 7 10:43:38 |
Script for T0391.t04.o_notor2 coloring in rasmol | T0391.t04.o_notor2-color.rasmol | 2008 May 7 10:43:38 |
o_notor2---sequence logo (eps format) (pdf format) | T0391.t04.o_notor2-logo | 2008 May 7 10:43:40 |
o_notor2 structure prediction (rdb format) (seq format) | T0391.t2k.o_notor2 | 2008 May 7 10:43:40 |
Script for T0391.t2k.o_notor2 coloring in rasmol | T0391.t2k.o_notor2-color.rasmol | 2008 May 7 10:43:40 |
o_notor2---sequence logo (eps format) (pdf format) | T0391.t2k.o_notor2-logo | 2008 May 7 10:43:42 |
o_notor structure prediction (rdb format) (seq format) | T0391.t06.o_notor | 2008 May 7 10:43:44 |
Script for T0391.t06.o_notor coloring in rasmol | T0391.t06.o_notor-color.rasmol | 2008 May 7 10:43:44 |
o_notor---sequence logo (eps format) (pdf format) | T0391.t06.o_notor-logo | 2008 May 7 10:43:46 |
o_notor structure prediction (rdb format) (seq format) | T0391.t04.o_notor | 2008 May 7 10:43:47 |
Script for T0391.t04.o_notor coloring in rasmol | T0391.t04.o_notor-color.rasmol | 2008 May 7 10:43:47 |
o_notor---sequence logo (eps format) (pdf format) | T0391.t04.o_notor-logo | 2008 May 7 10:43:49 |
o_notor structure prediction (rdb format) (seq format) | T0391.t2k.o_notor | 2008 May 7 10:43:50 |
Script for T0391.t2k.o_notor coloring in rasmol | T0391.t2k.o_notor-color.rasmol | 2008 May 7 10:43:50 |
o_notor---sequence logo (eps format) (pdf format) | T0391.t2k.o_notor-logo | 2008 May 7 10:43:52 |
o_sep structure prediction (rdb format) (seq format) | T0391.t06.o_sep | 2008 May 7 10:43:53 |
Script for T0391.t06.o_sep coloring in rasmol | T0391.t06.o_sep-color.rasmol | 2008 May 7 10:43:53 |
o_sep---sequence logo (eps format) (pdf format) | T0391.t06.o_sep-logo | 2008 May 7 10:43:55 |
o_sep structure prediction (rdb format) (seq format) | T0391.t04.o_sep | 2008 May 7 10:43:57 |
Script for T0391.t04.o_sep coloring in rasmol | T0391.t04.o_sep-color.rasmol | 2008 May 7 10:43:57 |
o_sep---sequence logo (eps format) (pdf format) | T0391.t04.o_sep-logo | 2008 May 7 10:43:59 |
o_sep structure prediction (rdb format) (seq format) | T0391.t2k.o_sep | 2008 May 7 10:43:59 |
Script for T0391.t2k.o_sep coloring in rasmol | T0391.t2k.o_sep-color.rasmol | 2008 May 7 10:43:59 |
o_sep---sequence logo (eps format) (pdf format) | T0391.t2k.o_sep-logo | 2008 May 7 10:44:01 |
dssp-ehl2 structure prediction (rdb format) (seq format) | T0391.t06.dssp-ehl2 | 2008 May 7 10:44:02 |
Script for T0391.t06.dssp-ehl2 coloring in rasmol | T0391.t06.dssp-ehl2-color.rasmol | 2008 May 7 10:44:02 |
dssp-ehl2---sequence logo (eps format) (pdf format) | T0391.t06.dssp-ehl2-logo | 2008 May 7 10:44:04 |
dssp-ehl2 structure prediction (rdb format) (seq format) | T0391.t04.dssp-ehl2 | 2008 May 7 10:44:04 |
Script for T0391.t04.dssp-ehl2 coloring in rasmol | T0391.t04.dssp-ehl2-color.rasmol | 2008 May 7 10:44:04 |
dssp-ehl2---sequence logo (eps format) (pdf format) | T0391.t04.dssp-ehl2-logo | 2008 May 7 10:44:06 |
dssp-ehl2 structure prediction (rdb format) (seq format) | T0391.t2k.dssp-ehl2 | 2008 May 7 10:44:06 |
Script for T0391.t2k.dssp-ehl2 coloring in rasmol | T0391.t2k.dssp-ehl2-color.rasmol | 2008 May 7 10:44:06 |
dssp-ehl2---sequence logo (eps format) (pdf format) | T0391.t2k.dssp-ehl2-logo | 2008 May 7 10:44:08 |
dssp-ehl2 structure prediction (rdb format) (seq format) | T0391.dssp-ehl2 | 2008 May 7 10:44:09 |
Script for T0391.dssp-ehl2 coloring in rasmol | T0391.dssp-ehl2-color.rasmol | 2008 May 7 10:44:09 |
dssp-ehl2---sequence logo (eps format) (pdf format) | T0391.dssp-ehl2-logo | 2008 May 7 10:44:11 |
CB_burial_14_7 structure prediction (rdb format) (seq format) | T0391.t06.CB_burial_14_7 | 2008 May 7 10:44:12 |
Script for T0391.t06.CB_burial_14_7 coloring in rasmol | T0391.t06.CB_burial_14_7-color.rasmol | 2008 May 7 10:44:12 |
CB_burial_14_7---sequence logo (eps format) (pdf format) | T0391.t06.CB_burial_14_7-logo | 2008 May 7 10:44:14 |
CB_burial_14_7 structure prediction (rdb format) (seq format) | T0391.t04.CB_burial_14_7 | 2008 May 7 10:44:15 |
Script for T0391.t04.CB_burial_14_7 coloring in rasmol | T0391.t04.CB_burial_14_7-color.rasmol | 2008 May 7 10:44:15 |
CB_burial_14_7---sequence logo (eps format) (pdf format) | T0391.t04.CB_burial_14_7-logo | 2008 May 7 10:44:17 |
CB_burial_14_7 structure prediction (rdb format) (seq format) | T0391.t2k.CB_burial_14_7 | 2008 May 7 10:44:18 |
Script for T0391.t2k.CB_burial_14_7 coloring in rasmol | T0391.t2k.CB_burial_14_7-color.rasmol | 2008 May 7 10:44:18 |
CB_burial_14_7---sequence logo (eps format) (pdf format) | T0391.t2k.CB_burial_14_7-logo | 2008 May 7 10:44:20 |
near-backbone-11 structure prediction (rdb format) (seq format) | T0391.t06.near-backbone-11 | 2008 May 7 10:44:21 |
Script for T0391.t06.near-backbone-11 coloring in rasmol | T0391.t06.near-backbone-11-color.rasmol | 2008 May 7 10:44:21 |
near-backbone-11---sequence logo (eps format) (pdf format) | T0391.t06.near-backbone-11-logo | 2008 May 7 10:44:23 |
near-backbone-11 structure prediction (rdb format) (seq format) | T0391.t04.near-backbone-11 | 2008 May 7 10:44:25 |
Script for T0391.t04.near-backbone-11 coloring in rasmol | T0391.t04.near-backbone-11-color.rasmol | 2008 May 7 10:44:25 |
near-backbone-11---sequence logo (eps format) (pdf format) | T0391.t04.near-backbone-11-logo | 2008 May 7 10:44:26 |
near-backbone-11 structure prediction (rdb format) (seq format) | T0391.t2k.near-backbone-11 | 2008 May 7 10:44:27 |
Script for T0391.t2k.near-backbone-11 coloring in rasmol | T0391.t2k.near-backbone-11-color.rasmol | 2008 May 7 10:44:27 |
near-backbone-11---sequence logo (eps format) (pdf format) | T0391.t2k.near-backbone-11-logo | 2008 May 7 10:44:29 |
CB8-sep9 structure prediction (rdb format) (seq format) | T0391.t06.CB8-sep9 | 2008 May 7 10:44:31 |
Script for T0391.t06.CB8-sep9 coloring in rasmol | T0391.t06.CB8-sep9-color.rasmol | 2008 May 7 10:44:31 |
CB8-sep9---sequence logo (eps format) (pdf format) | T0391.t06.CB8-sep9-logo | 2008 May 7 10:44:33 |
CB8-sep9 structure prediction (rdb format) (seq format) | T0391.t04.CB8-sep9 | 2008 May 7 10:44:34 |
Script for T0391.t04.CB8-sep9 coloring in rasmol | T0391.t04.CB8-sep9-color.rasmol | 2008 May 7 10:44:34 |
CB8-sep9---sequence logo (eps format) (pdf format) | T0391.t04.CB8-sep9-logo | 2008 May 7 10:44:36 |
CB8-sep9 structure prediction (rdb format) (seq format) | T0391.t2k.CB8-sep9 | 2008 May 7 10:44:37 |
Script for T0391.t2k.CB8-sep9 coloring in rasmol | T0391.t2k.CB8-sep9-color.rasmol | 2008 May 7 10:44:37 |
CB8-sep9---sequence logo (eps format) (pdf format) | T0391.t2k.CB8-sep9-logo | 2008 May 7 10:44:39 |
Target model scores |
amino acid single-track target model scores of PDB | T0391.t06-w0.5-scores.html | 2008 May 7 10:47:24 |
amino acid single-track target model scores of PDB | T0391.t04-w0.5-scores.html | 2008 May 7 10:50:11 |
amino acid single-track target model scores of PDB | T0391.t2k-w0.5-scores.html | 2008 May 7 10:52:47 |
amino acid/w0.5-1-str4-0.1 multi-track target model scores | T0391.t06-w0.5-1-str4-0.1-scores.html | 2008 May 7 10:54:11 |
amino acid/w0.5-1-str2-0.1 multi-track target model scores | T0391.t06-w0.5-1-str2-0.1-scores.html | 2008 May 7 10:55:35 |
amino acid/w0.5-1-alpha-0.1 multi-track target model scores | T0391.t06-w0.5-1-alpha-0.1-scores.html | 2008 May 7 10:56:58 |
amino acid/w0.5-1-bys-0.1 multi-track target model scores | T0391.t06-w0.5-1-bys-0.1-scores.html | 2008 May 7 10:58:22 |
amino acid/w0.5-1-pb-0.1 multi-track target model scores | T0391.t06-w0.5-1-pb-0.1-scores.html | 2008 May 7 10:59:45 |
amino acid/w0.5-1-n_notor2-0.1 multi-track target model scores | T0391.t06-w0.5-1-n_notor2-0.1-scores.html | 2008 May 7 11:01:10 |
amino acid/w0.5-1-n_notor-0.1 multi-track target model scores | T0391.t06-w0.5-1-n_notor-0.1-scores.html | 2008 May 7 11:02:34 |
amino acid/w0.5-1-n_sep-0.1 multi-track target model scores | T0391.t06-w0.5-1-n_sep-0.1-scores.html | 2008 May 7 11:03:57 |
amino acid/w0.5-1-o_notor2-0.1 multi-track target model scores | T0391.t06-w0.5-1-o_notor2-0.1-scores.html | 2008 May 7 11:05:21 |
amino acid/w0.5-1-o_notor-0.1 multi-track target model scores | T0391.t06-w0.5-1-o_notor-0.1-scores.html | 2008 May 7 11:06:44 |
amino acid/w0.5-1-o_sep-0.1 multi-track target model scores | T0391.t06-w0.5-1-o_sep-0.1-scores.html | 2008 May 7 11:08:07 |
amino acid/w0.5-1-dssp-ehl2-0.1 multi-track target model scores | T0391.t06-w0.5-1-dssp-ehl2-0.1-scores.html | 2008 May 7 11:09:31 |
amino acid/w0.5-1-CB_burial_14_7-0.3 multi-track target model scores | T0391.t06-w0.5-1-CB_burial_14_7-0.3-scores.html | 2008 May 7 11:10:57 |
amino acid/w0.5-1-near-backbone-11-0.3 multi-track target model scores | T0391.t06-w0.5-1-near-backbone-11-0.3-scores.html | 2008 May 7 11:12:22 |
amino acid/w0.5-1-CB8-sep9-0.3 multi-track target model scores | T0391.t06-w0.5-1-CB8-sep9-0.3-scores.html | 2008 May 7 11:13:48 |
amino acid/80-60-80-str2+near-backbone-11 multi-track target model scores | T0391.t06-80-60-80-str2+near-backbone-11-scores.html | 2008 May 7 11:15:28 |
amino acid/w0.5-1-str4-0.1 multi-track target model scores | T0391.t04-w0.5-1-str4-0.1-scores.html | 2008 May 7 11:17:02 |
amino acid/w0.5-1-str2-0.1 multi-track target model scores | T0391.t04-w0.5-1-str2-0.1-scores.html | 2008 May 7 11:18:35 |
amino acid/w0.5-1-alpha-0.1 multi-track target model scores | T0391.t04-w0.5-1-alpha-0.1-scores.html | 2008 May 7 11:20:07 |
amino acid/w0.5-1-bys-0.1 multi-track target model scores | T0391.t04-w0.5-1-bys-0.1-scores.html | 2008 May 7 11:21:39 |
amino acid/w0.5-1-pb-0.1 multi-track target model scores | T0391.t04-w0.5-1-pb-0.1-scores.html | 2008 May 7 11:23:12 |
amino acid/w0.5-1-n_notor2-0.1 multi-track target model scores | T0391.t04-w0.5-1-n_notor2-0.1-scores.html | 2008 May 7 11:24:46 |
amino acid/w0.5-1-n_notor-0.1 multi-track target model scores | T0391.t04-w0.5-1-n_notor-0.1-scores.html | 2008 May 7 11:26:20 |
amino acid/w0.5-1-n_sep-0.1 multi-track target model scores | T0391.t04-w0.5-1-n_sep-0.1-scores.html | 2008 May 7 11:27:53 |
amino acid/w0.5-1-o_notor2-0.1 multi-track target model scores | T0391.t04-w0.5-1-o_notor2-0.1-scores.html | 2008 May 7 11:29:26 |
amino acid/w0.5-1-o_notor-0.1 multi-track target model scores | T0391.t04-w0.5-1-o_notor-0.1-scores.html | 2008 May 7 11:30:59 |
amino acid/w0.5-1-o_sep-0.1 multi-track target model scores | T0391.t04-w0.5-1-o_sep-0.1-scores.html | 2008 May 7 11:32:31 |
amino acid/w0.5-1-dssp-ehl2-0.1 multi-track target model scores | T0391.t04-w0.5-1-dssp-ehl2-0.1-scores.html | 2008 May 7 11:34:04 |
amino acid/w0.5-1-CB_burial_14_7-0.3 multi-track target model scores | T0391.t04-w0.5-1-CB_burial_14_7-0.3-scores.html | 2008 May 7 11:35:40 |
amino acid/w0.5-1-near-backbone-11-0.3 multi-track target model scores | T0391.t04-w0.5-1-near-backbone-11-0.3-scores.html | 2008 May 7 11:37:14 |
amino acid/w0.5-1-CB8-sep9-0.3 multi-track target model scores | T0391.t04-w0.5-1-CB8-sep9-0.3-scores.html | 2008 May 7 11:38:50 |
amino acid/80-60-80-str2+near-backbone-11 multi-track target model scores | T0391.t04-80-60-80-str2+near-backbone-11-scores.html | 2008 May 7 11:40:42 |
amino acid/w0.5-1-str4-0.1 multi-track target model scores | T0391.t2k-w0.5-1-str4-0.1-scores.html | 2008 May 7 11:42:23 |
amino acid/w0.5-1-str2-0.1 multi-track target model scores | T0391.t2k-w0.5-1-str2-0.1-scores.html | 2008 May 7 11:44:04 |
amino acid/w0.5-1-alpha-0.1 multi-track target model scores | T0391.t2k-w0.5-1-alpha-0.1-scores.html | 2008 May 7 11:45:44 |
amino acid/w0.5-1-bys-0.1 multi-track target model scores | T0391.t2k-w0.5-1-bys-0.1-scores.html | 2008 May 7 11:47:25 |
amino acid/w0.5-1-pb-0.1 multi-track target model scores | T0391.t2k-w0.5-1-pb-0.1-scores.html | 2008 May 7 11:49:05 |
amino acid/w0.5-1-n_notor2-0.1 multi-track target model scores | T0391.t2k-w0.5-1-n_notor2-0.1-scores.html | 2008 May 7 11:50:48 |
amino acid/w0.5-1-n_notor-0.1 multi-track target model scores | T0391.t2k-w0.5-1-n_notor-0.1-scores.html | 2008 May 7 11:52:28 |
amino acid/w0.5-1-n_sep-0.1 multi-track target model scores | T0391.t2k-w0.5-1-n_sep-0.1-scores.html | 2008 May 7 11:54:08 |
amino acid/w0.5-1-o_notor2-0.1 multi-track target model scores | T0391.t2k-w0.5-1-o_notor2-0.1-scores.html | 2008 May 7 11:55:49 |
amino acid/w0.5-1-o_notor-0.1 multi-track target model scores | T0391.t2k-w0.5-1-o_notor-0.1-scores.html | 2008 May 7 11:57:29 |
amino acid/w0.5-1-o_sep-0.1 multi-track target model scores | T0391.t2k-w0.5-1-o_sep-0.1-scores.html | 2008 May 7 11:59:09 |
amino acid/w0.5-1-dssp-ehl2-0.1 multi-track target model scores | T0391.t2k-w0.5-1-dssp-ehl2-0.1-scores.html | 2008 May 7 12:00:50 |
amino acid/w0.5-1-CB_burial_14_7-0.3 multi-track target model scores | T0391.t2k-w0.5-1-CB_burial_14_7-0.3-scores.html | 2008 May 7 12:02:35 |
amino acid/w0.5-1-near-backbone-11-0.3 multi-track target model scores | T0391.t2k-w0.5-1-near-backbone-11-0.3-scores.html | 2008 May 7 12:04:16 |
amino acid/w0.5-1-CB8-sep9-0.3 multi-track target model scores | T0391.t2k-w0.5-1-CB8-sep9-0.3-scores.html | 2008 May 7 12:05:59 |
amino acid/80-60-80-str2+near-backbone-11 multi-track target model scores | T0391.t2k-80-60-80-str2+near-backbone-11-scores.html | 2008 May 7 12:08:01 |
Template model scores |
Annotated t06 template model scores | T0391.t06-template-lib-scores.html | 2008 May 7 12:13:09 |
Annotated t04 template model scores | T0391.t04-template-lib-scores.html | 2008 May 7 12:16:23 |
Annotated t2k template model scores | T0391.t2k-template-lib-scores.html | 2008 May 7 12:21:54 |
Top Hits |
Best scoring hits from t06 HMMs | T0391.t06.best-scores.html | 2008 May 7 12:21:58 |
Best scoring hits from t04 HMMs | T0391.t04.best-scores.html | 2008 May 7 12:22:00 |
Best scoring hits from t2k HMMs | T0391.t2k.best-scores.html | 2008 May 7 12:22:01 |
Best scoring hits from combining t06 t04 t2k | T0391.best-scores.html | 2008 May 7 12:22:03 |
Alignments for Top Hits |
Top alignments from t06 hits | T0391.t06.top_reported_alignments.html | 2008 May 7 12:25:12 |
Top alignments from t04 hits | T0391.t04.top_reported_alignments.html | 2008 May 7 12:25:12 |
Top alignments from t2k hits | T0391.t2k.top_reported_alignments.html | 2008 May 7 12:25:13 |
Top alignments from combined hits | T0391.top_reported_alignments.html | 2008 May 7 12:25:14 |
multiple alignment of templates (a2m.gz format) (pa format) | all-align | 2008 May 7 12:25:25 |
Undertaker (3d) files |
Undertaker input for top t06 alignments | T0391.t06.undertaker-align.under | 2008 May 7 12:25:32 |
Undertaker input for top t04 alignments | T0391.t04.undertaker-align.under | 2008 May 7 12:25:32 |
Undertaker input for top t2k alignments | T0391.t2k.undertaker-align.under | 2008 May 7 12:25:32 |
Undertaker input for top combined alignments | T0391.undertaker-align.under | 2008 May 7 12:25:32 |
PDB file with model(s) for top alignments | T0391.undertaker-align.pdb.gz | 2008 May 7 12:27:09 |
Images of an (incomplete) model created by sidechain replacement on the backbone of the highest scoring template.
Coloring is defined by ehl2, to show predicted secondary structure (red for helix, yellow for strand, blue for turn, grey for other).
Front | Top | Side |
500x500 | 500x500 | 500x500 |
Fragment list for undertaker (from fragfinder) | T0391.t06.many.frag.gz | 2008 May 7 12:29:29 |
Fragment list for undertaker (from fragfinder) | T0391.t04.many.frag.gz | 2008 May 7 12:30:04 |
Fragment list for undertaker (from fragfinder) | T0391.t2k.many.frag.gz | 2008 May 7 12:30:39 |
Contact predictions, based on |
contact predictions (rr format) (rr.nn1000.constraints format) (rr.rasmol format) | T0391.647_47 | 2008 May 7 12:36:30 |
contact predictions (rr format) (rr.nn1000.constraints format) (rr.rasmol format) | T0391.730_47 | 2008 May 7 12:36:32 |
contact predictions (rr format) (rr.nn1000.constraints format) (rr.rasmol format) | T0391.648_17.730_47 | 2008 May 7 12:37:56 |
Distance constraints extracted from alignments} |
Constraints from alignment | align.constraints | 2008 May 7 12:38:54 |
Rejected constraints | rejected_bonus.constraints | 2008 May 7 12:38:54 |
Noncontact constraints | noncontact.constraints | 2008 May 7 12:38:54 |
First attempted model using undertaker | decoys/T0391.try1-opt3.pdb.gz | 2008 May 7 13:57:50 |
Images of complete model in decoys/T0391.try1-opt3.pdb.gz
Coloring is defined by decoys/T0391.try1-opt3.t06.str2-color.rasmol, to show predicted secondary structure (red for helix, yellow for strand, blue for turn, grey for other).
Front | Top | Side |
500x500 | 500x500 | 500x500 |
Please cite the following papers:
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