Please cite the following papers:
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You may also view the list of files created so far. This link gives access to the full directory of file produced, including query progress logs, and this html file (summary.html). When the process is finished, you may want to download the entire directory to your computer, using a tool such as "wget".
Description | Link to file | Date |
Inputs |
Submitted sequence(s) | T0561.a2m | 2010 May 26 9:02:48 |
README file | README | 2010 May 26 9:11:48 |
Quick blastp of non-redundant PDB | T0561.pdb_blast.txt | 2010 May 26 9:12:05 |
Multiple alignment |
SAM_t06 multiple alignment in a2m format | T0561.t06.a2m.gz | 2010 May 26 9:28:19 |
SAM_t06 multiple alignment in pretty html format | T0561.t06.pa.html | 2010 May 26 9:28:27 |
SAM_t06 target hidden Markov model | T0561.t06.w0.5.mod | 2010 May 26 9:28:31 |
SAM_t06 multiple alignment---sequence logo (eps format) (pdf format) | T0561.t06.w0.5-logo | 2010 May 26 9:28:41 |
SAM_t06 consensus sequence | T0561.t06.w0.5.maxp | 2010 May 26 9:28:42 |
Script for highlighting in rasmol | conserved_t06 | 2010 May 26 9:28:43 |
SAM_t04 multiple alignment in a2m format | T0561.t04.a2m.gz | 2010 May 26 9:37:54 |
SAM_t04 multiple alignment in pretty html format | T0561.t04.pa.html | 2010 May 26 9:38:00 |
SAM_t04 target hidden Markov model | T0561.t04.w0.5.mod | 2010 May 26 9:38:04 |
SAM_t04 multiple alignment---sequence logo (eps format) (pdf format) | T0561.t04.w0.5-logo | 2010 May 26 9:38:12 |
SAM_t04 consensus sequence | T0561.t04.w0.5.maxp | 2010 May 26 9:38:13 |
Script for highlighting in rasmol | conserved_t04 | 2010 May 26 9:38:14 |
SAM_t2k multiple alignment in a2m format | T0561.t2k.a2m.gz | 2010 May 26 9:40:55 |
SAM_t2k multiple alignment in pretty html format | T0561.t2k.pa.html | 2010 May 26 9:41:01 |
SAM_t2k target hidden Markov model | T0561.t2k.w0.5.mod | 2010 May 26 9:41:04 |
SAM_t2k multiple alignment---sequence logo (eps format) (pdf format) | T0561.t2k.w0.5-logo | 2010 May 26 9:41:12 |
SAM_t2k consensus sequence | T0561.t2k.w0.5.maxp | 2010 May 26 9:41:12 |
Script for highlighting in rasmol | conserved_t2k | 2010 May 26 9:41:14 |
Secondary Structure Prediction (Explanation of secondary-structure predictions) |
str4 structure prediction (rdb format) (seq format) | T0561.t06.str4 | 2010 May 26 9:41:24 |
Script for T0561.t06.str4 coloring in rasmol | T0561.t06.str4-color.rasmol | 2010 May 26 9:41:24 |
str4---sequence logo (eps format) (pdf format) | T0561.t06.str4-logo | 2010 May 26 9:41:36 |
str4 structure prediction (rdb format) (seq format) | T0561.t04.str4 | 2010 May 26 9:41:39 |
Script for T0561.t04.str4 coloring in rasmol | T0561.t04.str4-color.rasmol | 2010 May 26 9:41:40 |
str4---sequence logo (eps format) (pdf format) | T0561.t04.str4-logo | 2010 May 26 9:41:46 |
str4 structure prediction (rdb format) (seq format) | T0561.t2k.str4 | 2010 May 26 9:41:49 |
Script for T0561.t2k.str4 coloring in rasmol | T0561.t2k.str4-color.rasmol | 2010 May 26 9:41:49 |
str4---sequence logo (eps format) (pdf format) | T0561.t2k.str4-logo | 2010 May 26 9:41:54 |
str2 structure prediction (rdb format) (seq format) | T0561.t06.str2 | 2010 May 26 9:28:36 |
Script for T0561.t06.str2 coloring in rasmol | T0561.t06.str2-color.rasmol | 2010 May 26 9:41:57 |
str2---sequence logo (eps format) (pdf format) | T0561.t06.str2-logo | 2010 May 26 9:42:01 |
str2 structure prediction (rdb format) (seq format) | T0561.t04.str2 | 2010 May 26 9:38:09 |
Script for T0561.t04.str2 coloring in rasmol | T0561.t04.str2-color.rasmol | 2010 May 26 9:42:02 |
str2---sequence logo (eps format) (pdf format) | T0561.t04.str2-logo | 2010 May 26 9:42:06 |
str2 structure prediction (rdb format) (seq format) | T0561.t2k.str2 | 2010 May 26 9:41:08 |
Script for T0561.t2k.str2 coloring in rasmol | T0561.t2k.str2-color.rasmol | 2010 May 26 9:42:08 |
str2---sequence logo (eps format) (pdf format) | T0561.t2k.str2-logo | 2010 May 26 9:42:12 |
alpha structure prediction (rdb format) (seq format) | T0561.t06.alpha | 2010 May 26 9:42:16 |
Script for T0561.t06.alpha coloring in rasmol | T0561.t06.alpha-color.rasmol | 2010 May 26 9:42:17 |
alpha---sequence logo (eps format) (pdf format) | T0561.t06.alpha-logo | 2010 May 26 9:42:21 |
alpha structure prediction (rdb format) (seq format) | T0561.t04.alpha | 2010 May 26 9:42:24 |
Script for T0561.t04.alpha coloring in rasmol | T0561.t04.alpha-color.rasmol | 2010 May 26 9:42:25 |
alpha---sequence logo (eps format) (pdf format) | T0561.t04.alpha-logo | 2010 May 26 9:42:28 |
alpha structure prediction (rdb format) (seq format) | T0561.t2k.alpha | 2010 May 26 9:42:32 |
Script for T0561.t2k.alpha coloring in rasmol | T0561.t2k.alpha-color.rasmol | 2010 May 26 9:42:32 |
alpha---sequence logo (eps format) (pdf format) | T0561.t2k.alpha-logo | 2010 May 26 9:42:38 |
bys structure prediction (rdb format) (seq format) | T0561.t06.bys | 2010 May 26 9:42:42 |
Script for T0561.t06.bys coloring in rasmol | T0561.t06.bys-color.rasmol | 2010 May 26 9:42:43 |
bys---sequence logo (eps format) (pdf format) | T0561.t06.bys-logo | 2010 May 26 9:42:46 |
bys structure prediction (rdb format) (seq format) | T0561.t04.bys | 2010 May 26 9:42:49 |
Script for T0561.t04.bys coloring in rasmol | T0561.t04.bys-color.rasmol | 2010 May 26 9:42:49 |
bys---sequence logo (eps format) (pdf format) | T0561.t04.bys-logo | 2010 May 26 9:42:54 |
bys structure prediction (rdb format) (seq format) | T0561.t2k.bys | 2010 May 26 9:42:56 |
Script for T0561.t2k.bys coloring in rasmol | T0561.t2k.bys-color.rasmol | 2010 May 26 9:42:57 |
bys---sequence logo (eps format) (pdf format) | T0561.t2k.bys-logo | 2010 May 26 9:42:59 |
pb structure prediction (rdb format) (seq format) | T0561.t06.pb | 2010 May 26 9:43:03 |
Script for T0561.t06.pb coloring in rasmol | T0561.t06.pb-color.rasmol | 2010 May 26 9:43:04 |
pb---sequence logo (eps format) (pdf format) | T0561.t06.pb-logo | 2010 May 26 9:43:07 |
pb structure prediction (rdb format) (seq format) | T0561.t04.pb | 2010 May 26 9:43:11 |
Script for T0561.t04.pb coloring in rasmol | T0561.t04.pb-color.rasmol | 2010 May 26 9:43:12 |
pb---sequence logo (eps format) (pdf format) | T0561.t04.pb-logo | 2010 May 26 9:43:17 |
pb structure prediction (rdb format) (seq format) | T0561.t2k.pb | 2010 May 26 9:43:20 |
Script for T0561.t2k.pb coloring in rasmol | T0561.t2k.pb-color.rasmol | 2010 May 26 9:43:20 |
pb---sequence logo (eps format) (pdf format) | T0561.t2k.pb-logo | 2010 May 26 9:43:25 |
n_notor2 structure prediction (rdb format) (seq format) | T0561.t06.n_notor2 | 2010 May 26 9:43:29 |
Script for T0561.t06.n_notor2 coloring in rasmol | T0561.t06.n_notor2-color.rasmol | 2010 May 26 9:43:30 |
n_notor2---sequence logo (eps format) (pdf format) | T0561.t06.n_notor2-logo | 2010 May 26 9:43:34 |
n_notor2 structure prediction (rdb format) (seq format) | T0561.t04.n_notor2 | 2010 May 26 9:43:37 |
Script for T0561.t04.n_notor2 coloring in rasmol | T0561.t04.n_notor2-color.rasmol | 2010 May 26 9:43:38 |
n_notor2---sequence logo (eps format) (pdf format) | T0561.t04.n_notor2-logo | 2010 May 26 9:43:42 |
n_notor2 structure prediction (rdb format) (seq format) | T0561.t2k.n_notor2 | 2010 May 26 9:43:45 |
Script for T0561.t2k.n_notor2 coloring in rasmol | T0561.t2k.n_notor2-color.rasmol | 2010 May 26 9:43:45 |
n_notor2---sequence logo (eps format) (pdf format) | T0561.t2k.n_notor2-logo | 2010 May 26 9:43:49 |
n_notor structure prediction (rdb format) (seq format) | T0561.t06.n_notor | 2010 May 26 9:43:52 |
Script for T0561.t06.n_notor coloring in rasmol | T0561.t06.n_notor-color.rasmol | 2010 May 26 9:43:52 |
n_notor---sequence logo (eps format) (pdf format) | T0561.t06.n_notor-logo | 2010 May 26 9:43:56 |
n_notor structure prediction (rdb format) (seq format) | T0561.t04.n_notor | 2010 May 26 9:43:59 |
Script for T0561.t04.n_notor coloring in rasmol | T0561.t04.n_notor-color.rasmol | 2010 May 26 9:43:59 |
n_notor---sequence logo (eps format) (pdf format) | T0561.t04.n_notor-logo | 2010 May 26 9:44:03 |
n_notor structure prediction (rdb format) (seq format) | T0561.t2k.n_notor | 2010 May 26 9:44:05 |
Script for T0561.t2k.n_notor coloring in rasmol | T0561.t2k.n_notor-color.rasmol | 2010 May 26 9:44:06 |
n_notor---sequence logo (eps format) (pdf format) | T0561.t2k.n_notor-logo | 2010 May 26 9:44:12 |
n_sep structure prediction (rdb format) (seq format) | T0561.t06.n_sep | 2010 May 26 9:44:15 |
Script for T0561.t06.n_sep coloring in rasmol | T0561.t06.n_sep-color.rasmol | 2010 May 26 9:44:15 |
n_sep---sequence logo (eps format) (pdf format) | T0561.t06.n_sep-logo | 2010 May 26 9:44:19 |
n_sep structure prediction (rdb format) (seq format) | T0561.t04.n_sep | 2010 May 26 9:44:22 |
Script for T0561.t04.n_sep coloring in rasmol | T0561.t04.n_sep-color.rasmol | 2010 May 26 9:44:23 |
n_sep---sequence logo (eps format) (pdf format) | T0561.t04.n_sep-logo | 2010 May 26 9:44:27 |
n_sep structure prediction (rdb format) (seq format) | T0561.t2k.n_sep | 2010 May 26 9:44:30 |
Script for T0561.t2k.n_sep coloring in rasmol | T0561.t2k.n_sep-color.rasmol | 2010 May 26 9:44:30 |
n_sep---sequence logo (eps format) (pdf format) | T0561.t2k.n_sep-logo | 2010 May 26 9:44:34 |
o_notor2 structure prediction (rdb format) (seq format) | T0561.t06.o_notor2 | 2010 May 26 9:44:38 |
Script for T0561.t06.o_notor2 coloring in rasmol | T0561.t06.o_notor2-color.rasmol | 2010 May 26 9:44:39 |
o_notor2---sequence logo (eps format) (pdf format) | T0561.t06.o_notor2-logo | 2010 May 26 9:44:42 |
o_notor2 structure prediction (rdb format) (seq format) | T0561.t04.o_notor2 | 2010 May 26 9:44:45 |
Script for T0561.t04.o_notor2 coloring in rasmol | T0561.t04.o_notor2-color.rasmol | 2010 May 26 9:44:46 |
o_notor2---sequence logo (eps format) (pdf format) | T0561.t04.o_notor2-logo | 2010 May 26 9:44:50 |
o_notor2 structure prediction (rdb format) (seq format) | T0561.t2k.o_notor2 | 2010 May 26 9:44:53 |
Script for T0561.t2k.o_notor2 coloring in rasmol | T0561.t2k.o_notor2-color.rasmol | 2010 May 26 9:44:53 |
o_notor2---sequence logo (eps format) (pdf format) | T0561.t2k.o_notor2-logo | 2010 May 26 9:44:57 |
o_notor structure prediction (rdb format) (seq format) | T0561.t06.o_notor | 2010 May 26 9:45:00 |
Script for T0561.t06.o_notor coloring in rasmol | T0561.t06.o_notor-color.rasmol | 2010 May 26 9:45:01 |
o_notor---sequence logo (eps format) (pdf format) | T0561.t06.o_notor-logo | 2010 May 26 9:45:05 |
o_notor structure prediction (rdb format) (seq format) | T0561.t04.o_notor | 2010 May 26 9:45:08 |
Script for T0561.t04.o_notor coloring in rasmol | T0561.t04.o_notor-color.rasmol | 2010 May 26 9:45:09 |
o_notor---sequence logo (eps format) (pdf format) | T0561.t04.o_notor-logo | 2010 May 26 9:45:13 |
o_notor structure prediction (rdb format) (seq format) | T0561.t2k.o_notor | 2010 May 26 9:45:16 |
Script for T0561.t2k.o_notor coloring in rasmol | T0561.t2k.o_notor-color.rasmol | 2010 May 26 9:45:17 |
o_notor---sequence logo (eps format) (pdf format) | T0561.t2k.o_notor-logo | 2010 May 26 9:45:21 |
o_sep structure prediction (rdb format) (seq format) | T0561.t06.o_sep | 2010 May 26 9:45:26 |
Script for T0561.t06.o_sep coloring in rasmol | T0561.t06.o_sep-color.rasmol | 2010 May 26 9:45:26 |
o_sep---sequence logo (eps format) (pdf format) | T0561.t06.o_sep-logo | 2010 May 26 9:45:30 |
o_sep structure prediction (rdb format) (seq format) | T0561.t04.o_sep | 2010 May 26 9:45:33 |
Script for T0561.t04.o_sep coloring in rasmol | T0561.t04.o_sep-color.rasmol | 2010 May 26 9:45:34 |
o_sep---sequence logo (eps format) (pdf format) | T0561.t04.o_sep-logo | 2010 May 26 9:45:38 |
o_sep structure prediction (rdb format) (seq format) | T0561.t2k.o_sep | 2010 May 26 9:45:41 |
Script for T0561.t2k.o_sep coloring in rasmol | T0561.t2k.o_sep-color.rasmol | 2010 May 26 9:45:42 |
o_sep---sequence logo (eps format) (pdf format) | T0561.t2k.o_sep-logo | 2010 May 26 9:45:45 |
dssp-ehl2 structure prediction (rdb format) (seq format) | T0561.t06.dssp-ehl2 | 2010 May 26 9:45:48 |
Script for T0561.t06.dssp-ehl2 coloring in rasmol | T0561.t06.dssp-ehl2-color.rasmol | 2010 May 26 9:45:48 |
dssp-ehl2---sequence logo (eps format) (pdf format) | T0561.t06.dssp-ehl2-logo | 2010 May 26 9:45:52 |
dssp-ehl2 structure prediction (rdb format) (seq format) | T0561.t04.dssp-ehl2 | 2010 May 26 9:45:54 |
Script for T0561.t04.dssp-ehl2 coloring in rasmol | T0561.t04.dssp-ehl2-color.rasmol | 2010 May 26 9:45:54 |
dssp-ehl2---sequence logo (eps format) (pdf format) | T0561.t04.dssp-ehl2-logo | 2010 May 26 9:45:58 |
dssp-ehl2 structure prediction (rdb format) (seq format) | T0561.t2k.dssp-ehl2 | 2010 May 26 9:46:00 |
Script for T0561.t2k.dssp-ehl2 coloring in rasmol | T0561.t2k.dssp-ehl2-color.rasmol | 2010 May 26 9:46:00 |
dssp-ehl2---sequence logo (eps format) (pdf format) | T0561.t2k.dssp-ehl2-logo | 2010 May 26 9:46:04 |
dssp-ehl2 structure prediction (rdb format) (seq format) | T0561.dssp-ehl2 | 2010 May 26 9:46:08 |
Script for T0561.dssp-ehl2 coloring in rasmol | T0561.dssp-ehl2-color.rasmol | 2010 May 26 9:46:08 |
dssp-ehl2---sequence logo (eps format) (pdf format) | T0561.dssp-ehl2-logo | 2010 May 26 9:46:12 |
CB_burial_14_7 structure prediction (rdb format) (seq format) | T0561.t06.CB_burial_14_7 | 2010 May 26 9:46:17 |
Script for T0561.t06.CB_burial_14_7 coloring in rasmol | T0561.t06.CB_burial_14_7-color.rasmol | 2010 May 26 9:46:19 |
CB_burial_14_7---sequence logo (eps format) (pdf format) | T0561.t06.CB_burial_14_7-logo | 2010 May 26 9:46:24 |
CB_burial_14_7 structure prediction (rdb format) (seq format) | T0561.t04.CB_burial_14_7 | 2010 May 26 9:46:28 |
Script for T0561.t04.CB_burial_14_7 coloring in rasmol | T0561.t04.CB_burial_14_7-color.rasmol | 2010 May 26 9:46:29 |
CB_burial_14_7---sequence logo (eps format) (pdf format) | T0561.t04.CB_burial_14_7-logo | 2010 May 26 9:46:33 |
CB_burial_14_7 structure prediction (rdb format) (seq format) | T0561.t2k.CB_burial_14_7 | 2010 May 26 9:46:36 |
Script for T0561.t2k.CB_burial_14_7 coloring in rasmol | T0561.t2k.CB_burial_14_7-color.rasmol | 2010 May 26 9:46:37 |
CB_burial_14_7---sequence logo (eps format) (pdf format) | T0561.t2k.CB_burial_14_7-logo | 2010 May 26 9:46:42 |
near-backbone-11 structure prediction (rdb format) (seq format) | T0561.t06.near-backbone-11 | 2010 May 26 9:46:46 |
Script for T0561.t06.near-backbone-11 coloring in rasmol | T0561.t06.near-backbone-11-color.rasmol | 2010 May 26 9:46:46 |
near-backbone-11---sequence logo (eps format) (pdf format) | T0561.t06.near-backbone-11-logo | 2010 May 26 9:46:50 |
near-backbone-11 structure prediction (rdb format) (seq format) | T0561.t04.near-backbone-11 | 2010 May 26 9:46:53 |
Script for T0561.t04.near-backbone-11 coloring in rasmol | T0561.t04.near-backbone-11-color.rasmol | 2010 May 26 9:46:54 |
near-backbone-11---sequence logo (eps format) (pdf format) | T0561.t04.near-backbone-11-logo | 2010 May 26 9:46:58 |
near-backbone-11 structure prediction (rdb format) (seq format) | T0561.t2k.near-backbone-11 | 2010 May 26 9:47:00 |
Script for T0561.t2k.near-backbone-11 coloring in rasmol | T0561.t2k.near-backbone-11-color.rasmol | 2010 May 26 9:47:01 |
near-backbone-11---sequence logo (eps format) (pdf format) | T0561.t2k.near-backbone-11-logo | 2010 May 26 9:47:05 |
CB8-sep9 structure prediction (rdb format) (seq format) | T0561.t06.CB8-sep9 | 2010 May 26 9:47:10 |
Script for T0561.t06.CB8-sep9 coloring in rasmol | T0561.t06.CB8-sep9-color.rasmol | 2010 May 26 9:47:11 |
CB8-sep9---sequence logo (eps format) (pdf format) | T0561.t06.CB8-sep9-logo | 2010 May 26 9:47:15 |
CB8-sep9 structure prediction (rdb format) (seq format) | T0561.t04.CB8-sep9 | 2010 May 26 9:47:18 |
Script for T0561.t04.CB8-sep9 coloring in rasmol | T0561.t04.CB8-sep9-color.rasmol | 2010 May 26 9:47:18 |
CB8-sep9---sequence logo (eps format) (pdf format) | T0561.t04.CB8-sep9-logo | 2010 May 26 9:47:22 |
CB8-sep9 structure prediction (rdb format) (seq format) | T0561.t2k.CB8-sep9 | 2010 May 26 9:47:24 |
Script for T0561.t2k.CB8-sep9 coloring in rasmol | T0561.t2k.CB8-sep9-color.rasmol | 2010 May 26 9:47:25 |
CB8-sep9---sequence logo (eps format) (pdf format) | T0561.t2k.CB8-sep9-logo | 2010 May 26 9:47:29 |
Target model scores |
amino acid single-track target model scores of PDB | T0561.t06-w0.5-scores.html | 2010 May 26 9:52:25 |
amino acid single-track target model scores of PDB | T0561.t04-w0.5-scores.html | 2010 May 26 9:56:24 |
amino acid single-track target model scores of PDB | T0561.t2k-w0.5-scores.html | 2010 May 26 10:00:26 |
amino acid/w0.5-1-str4-0.1 multi-track target model scores | T0561.t06-w0.5-1-str4-0.1-scores.html | 2010 May 26 10:02:40 |
amino acid/w0.5-1-str2-0.1 multi-track target model scores | T0561.t06-w0.5-1-str2-0.1-scores.html | 2010 May 26 10:04:55 |
amino acid/w0.5-1-alpha-0.1 multi-track target model scores | T0561.t06-w0.5-1-alpha-0.1-scores.html | 2010 May 26 10:07:10 |
amino acid/w0.5-1-bys-0.1 multi-track target model scores | T0561.t06-w0.5-1-bys-0.1-scores.html | 2010 May 26 10:09:26 |
amino acid/w0.5-1-pb-0.1 multi-track target model scores | T0561.t06-w0.5-1-pb-0.1-scores.html | 2010 May 26 10:11:41 |
amino acid/w0.5-1-n_notor2-0.1 multi-track target model scores | T0561.t06-w0.5-1-n_notor2-0.1-scores.html | 2010 May 26 10:13:56 |
amino acid/w0.5-1-n_notor-0.1 multi-track target model scores | T0561.t06-w0.5-1-n_notor-0.1-scores.html | 2010 May 26 10:16:12 |
amino acid/w0.5-1-n_sep-0.1 multi-track target model scores | T0561.t06-w0.5-1-n_sep-0.1-scores.html | 2010 May 26 10:18:28 |
amino acid/w0.5-1-o_notor2-0.1 multi-track target model scores | T0561.t06-w0.5-1-o_notor2-0.1-scores.html | 2010 May 26 10:20:42 |
amino acid/w0.5-1-o_notor-0.1 multi-track target model scores | T0561.t06-w0.5-1-o_notor-0.1-scores.html | 2010 May 26 10:22:55 |
amino acid/w0.5-1-o_sep-0.1 multi-track target model scores | T0561.t06-w0.5-1-o_sep-0.1-scores.html | 2010 May 26 10:25:12 |
amino acid/w0.5-1-dssp-ehl2-0.1 multi-track target model scores | T0561.t06-w0.5-1-dssp-ehl2-0.1-scores.html | 2010 May 26 10:27:27 |
amino acid/w0.5-1-CB_burial_14_7-0.3 multi-track target model scores | T0561.t06-w0.5-1-CB_burial_14_7-0.3-scores.html | 2010 May 26 10:29:46 |
amino acid/w0.5-1-near-backbone-11-0.3 multi-track target model scores | T0561.t06-w0.5-1-near-backbone-11-0.3-scores.html | 2010 May 26 10:32:03 |
amino acid/w0.5-1-CB8-sep9-0.3 multi-track target model scores | T0561.t06-w0.5-1-CB8-sep9-0.3-scores.html | 2010 May 26 10:34:20 |
amino acid/80-60-80-str2+near-backbone-11 multi-track target model scores | T0561.t06-80-60-80-str2+near-backbone-11-scores.html | 2010 May 26 10:36:52 |
amino acid/w0.5-1-str4-0.1 multi-track target model scores | T0561.t04-w0.5-1-str4-0.1-scores.html | 2010 May 26 10:39:17 |
amino acid/w0.5-1-str2-0.1 multi-track target model scores | T0561.t04-w0.5-1-str2-0.1-scores.html | 2010 May 26 10:41:41 |
amino acid/w0.5-1-alpha-0.1 multi-track target model scores | T0561.t04-w0.5-1-alpha-0.1-scores.html | 2010 May 26 10:44:03 |
amino acid/w0.5-1-bys-0.1 multi-track target model scores | T0561.t04-w0.5-1-bys-0.1-scores.html | 2010 May 26 10:46:29 |
amino acid/w0.5-1-pb-0.1 multi-track target model scores | T0561.t04-w0.5-1-pb-0.1-scores.html | 2010 May 26 10:48:54 |
amino acid/w0.5-1-n_notor2-0.1 multi-track target model scores | T0561.t04-w0.5-1-n_notor2-0.1-scores.html | 2010 May 26 10:51:18 |
amino acid/w0.5-1-n_notor-0.1 multi-track target model scores | T0561.t04-w0.5-1-n_notor-0.1-scores.html | 2010 May 26 10:53:43 |
amino acid/w0.5-1-n_sep-0.1 multi-track target model scores | T0561.t04-w0.5-1-n_sep-0.1-scores.html | 2010 May 26 10:56:07 |
amino acid/w0.5-1-o_notor2-0.1 multi-track target model scores | T0561.t04-w0.5-1-o_notor2-0.1-scores.html | 2010 May 26 10:58:32 |
amino acid/w0.5-1-o_notor-0.1 multi-track target model scores | T0561.t04-w0.5-1-o_notor-0.1-scores.html | 2010 May 26 11:00:57 |
amino acid/w0.5-1-o_sep-0.1 multi-track target model scores | T0561.t04-w0.5-1-o_sep-0.1-scores.html | 2010 May 26 11:03:28 |
amino acid/w0.5-1-dssp-ehl2-0.1 multi-track target model scores | T0561.t04-w0.5-1-dssp-ehl2-0.1-scores.html | 2010 May 26 11:05:58 |
amino acid/w0.5-1-CB_burial_14_7-0.3 multi-track target model scores | T0561.t04-w0.5-1-CB_burial_14_7-0.3-scores.html | 2010 May 26 11:08:26 |
amino acid/w0.5-1-near-backbone-11-0.3 multi-track target model scores | T0561.t04-w0.5-1-near-backbone-11-0.3-scores.html | 2010 May 26 11:10:53 |
amino acid/w0.5-1-CB8-sep9-0.3 multi-track target model scores | T0561.t04-w0.5-1-CB8-sep9-0.3-scores.html | 2010 May 26 11:13:19 |
amino acid/80-60-80-str2+near-backbone-11 multi-track target model scores | T0561.t04-80-60-80-str2+near-backbone-11-scores.html | 2010 May 26 11:16:03 |
amino acid/w0.5-1-str4-0.1 multi-track target model scores | T0561.t2k-w0.5-1-str4-0.1-scores.html | 2010 May 26 11:18:54 |
amino acid/w0.5-1-str2-0.1 multi-track target model scores | T0561.t2k-w0.5-1-str2-0.1-scores.html | 2010 May 26 11:21:44 |
amino acid/w0.5-1-alpha-0.1 multi-track target model scores | T0561.t2k-w0.5-1-alpha-0.1-scores.html | 2010 May 26 11:24:31 |
amino acid/w0.5-1-bys-0.1 multi-track target model scores | T0561.t2k-w0.5-1-bys-0.1-scores.html | 2010 May 26 11:27:21 |
amino acid/w0.5-1-pb-0.1 multi-track target model scores | T0561.t2k-w0.5-1-pb-0.1-scores.html | 2010 May 26 11:30:11 |
amino acid/w0.5-1-n_notor2-0.1 multi-track target model scores | T0561.t2k-w0.5-1-n_notor2-0.1-scores.html | 2010 May 26 11:33:05 |
amino acid/w0.5-1-n_notor-0.1 multi-track target model scores | T0561.t2k-w0.5-1-n_notor-0.1-scores.html | 2010 May 26 11:35:56 |
amino acid/w0.5-1-n_sep-0.1 multi-track target model scores | T0561.t2k-w0.5-1-n_sep-0.1-scores.html | 2010 May 26 11:38:44 |
amino acid/w0.5-1-o_notor2-0.1 multi-track target model scores | T0561.t2k-w0.5-1-o_notor2-0.1-scores.html | 2010 May 26 11:41:36 |
amino acid/w0.5-1-o_notor-0.1 multi-track target model scores | T0561.t2k-w0.5-1-o_notor-0.1-scores.html | 2010 May 26 11:44:27 |
amino acid/w0.5-1-o_sep-0.1 multi-track target model scores | T0561.t2k-w0.5-1-o_sep-0.1-scores.html | 2010 May 26 11:47:17 |
amino acid/w0.5-1-dssp-ehl2-0.1 multi-track target model scores | T0561.t2k-w0.5-1-dssp-ehl2-0.1-scores.html | 2010 May 26 11:50:02 |
amino acid/w0.5-1-CB_burial_14_7-0.3 multi-track target model scores | T0561.t2k-w0.5-1-CB_burial_14_7-0.3-scores.html | 2010 May 26 11:52:55 |
amino acid/w0.5-1-near-backbone-11-0.3 multi-track target model scores | T0561.t2k-w0.5-1-near-backbone-11-0.3-scores.html | 2010 May 26 11:55:46 |
amino acid/w0.5-1-CB8-sep9-0.3 multi-track target model scores | T0561.t2k-w0.5-1-CB8-sep9-0.3-scores.html | 2010 May 26 11:58:36 |
amino acid/80-60-80-str2+near-backbone-11 multi-track target model scores | T0561.t2k-80-60-80-str2+near-backbone-11-scores.html | 2010 May 26 12:01:45 |
Template model scores |
Annotated t06 template model scores | T0561.t06-template-lib-scores.html | 2010 May 26 13:59:56 |
Annotated t04 template model scores | T0561.t04-template-lib-scores.html | 2010 May 26 15:56:15 |
Annotated t2k template model scores | T0561.t2k-template-lib-scores.html | 2010 May 26 18:18:52 |
Top Hits |
Best scoring hits from t06 HMMs | T0561.t06.best-scores.html | 2010 May 26 18:23:28 |
Best scoring hits from t04 HMMs | T0561.t04.best-scores.html | 2010 May 26 18:27:29 |
Best scoring hits from t2k HMMs | T0561.t2k.best-scores.html | 2010 May 26 18:31:29 |
Best scoring hits from combining t06 t04 t2k | T0561.best-scores-all.html | 2010 May 26 18:31:31 |
Alignments for Top Hits |
Top alignments from t06 hits | T0561.t06.top_reported_alignments.html | 2010 May 26 19:57:36 |
Top alignments from t04 hits | T0561.t04.top_reported_alignments.html | 2010 May 26 19:57:38 |
Top alignments from t2k hits | T0561.t2k.top_reported_alignments.html | 2010 May 26 19:57:39 |
Top alignments from combined hits | T0561.top_reported_alignments.html | 2010 May 26 19:57:41 |
multiple alignment of templates (a2m.gz format) (pa format) | all-align | 2010 May 26 19:58:58 |
Undertaker (3d) files |
Undertaker input for top t06 alignments | T0561.t06.undertaker-align.under | 2010 May 26 20:03:53 |
Undertaker input for top t04 alignments | T0561.t04.undertaker-align.under | 2010 May 26 20:03:54 |
Undertaker input for top t2k alignments | T0561.t2k.undertaker-align.under | 2010 May 26 20:03:56 |
Undertaker input for top combined alignments | T0561.undertaker-align.under | 2010 May 26 20:03:58 |
PDB file with model(s) for top alignments | T0561.undertaker-align.pdb.gz | 2010 May 26 20:07:48 |
Images of an (incomplete) model created by sidechain replacement on the backbone of the highest scoring template.
Coloring is defined by ehl2, to show predicted secondary structure (red for helix, yellow for strand, blue for turn, grey for other).
Front | Top | Side |
500x500 | 500x500 | 500x500 |
Fragment list for undertaker (from fragfinder) | T0561.t06.many.frag.gz | 2010 May 26 20:08:41 |
Fragment list for undertaker (from fragfinder) | T0561.t04.many.frag.gz | 2010 May 26 20:09:22 |
Fragment list for undertaker (from fragfinder) | T0561.t2k.many.frag.gz | 2010 May 26 20:10:04 |
Contact predictions, based on predicted burial (near-backbone-11), predicted secondary structure(str2), predicted H-bonds (n_sep), amino acid profile, log(protein length), log(separation) |
contact predictions (rr format) (rr.nn1000.constraints format) (rr.rasmol format) | T0561.730_47 | 2010 May 26 20:13:28 |
contact predictions (rr format) (rr.nn1000.constraints format) (rr.rasmol format) | T0561.648_17.730_47 | 2010 May 26 20:13:34 |
Distance constraints extracted from alignments |
Constraints from alignment | align.constraints | 2010 May 26 20:18:18 |
Rejected constraints | rejected_bonus.constraints | 2010 May 26 20:18:18 |
Noncontact constraints | noncontact.constraints | 2010 May 26 20:18:19 |
First attempted model using undertaker | decoys/T0561.try1-opt3.pdb.gz | 2010 May 26 22:39:40 |
Images of complete model in decoys/T0561.try1-opt3.pdb.gz
Coloring is defined by the dssp rasmol script, to show predicted secondary structure (red for helix, yellow for strand, blue for turn, grey for other).
Front | Top | Side |
500x500 | 500x500 | 500x500 |
Gzipped tarball of all the files | T0561.tgz | 2010 May 26 22:49:30 |
Please cite the following papers:
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