Best Alignments for T0561

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1xrjA	2.6764e+00	1xrjA/T0561-1xrjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.6
1uj2A	1.7645e+01	1uj2A/T0561-1uj2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.6
2c12A	3.3762e+01	2c12A/T0561-2c12A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.29.3.1 e.6.1.1
2kduB	4.8936e+01	2kduB/T0561-2kduB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2cxnA	5.1920e+01	2cxnA/T0561-2cxnA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1h0cA	5.2104e+01	1h0cA/T0561-1h0cA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.67.1.3
1p3wA	5.2463e+01	1p3wA/T0561-1p3wA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.67.1.3
3ljkA	5.7227e+01	3ljkA/T0561-3ljkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2oa4A	5.9715e+01	2oa4A/T0561-2oa4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.12.3
2ap3A	5.9885e+01	2ap3A/T0561-2ap3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2qqpB	6.5949e+01	2qqpB/T0561-2qqpB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3gkoA	6.6588e+01	3gkoA/T0561-3gkoA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2wa0A	6.9655e+01	2wa0A/T0561-2wa0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2iqcA	7.0483e+01	2iqcA/T0561-2iqcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2z8aA	7.1832e+01	2z8aA/T0561-2z8aA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1elqA	7.2184e+01	1elqA/T0561-1elqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.67.1.3
2od4A	7.3968e+01	2od4A/T0561-2od4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.58.4.20
2glfA	7.4366e+01	2glfA/T0561-2glfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3hjbA	7.5399e+01	3hjbA/T0561-3hjbA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1wymA	7.8713e+01	1wymA/T0561-1wymA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001