Best Alignments for T0561

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2dwkA	2.1436e+01	2dwkA/T0561-2dwkA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1uj2A	2.9568e+01	1uj2A/T0561-1uj2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.6
1xrjA	3.2094e+01	1xrjA/T0561-1xrjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.6
2oa4A	4.3198e+01	2oa4A/T0561-2oa4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.12.3
3a7sA	5.8059e+01	3a7sA/T0561-3a7sA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2avwA	6.7728e+01	2avwA/T0561-2avwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1okcA	7.4606e+01	1okcA/T0561-1okcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.42.1.1
1svmA	7.5255e+01	1svmA/T0561-1svmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.20
2wa0A	7.6847e+01	2wa0A/T0561-2wa0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ap3A	8.7153e+01	2ap3A/T0561-2ap3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3h8lA	9.3296e+01	3h8lA/T0561-3h8lA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1y08A	9.4217e+01	1y08A/T0561-1y08A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.3.1.12
3m5rA	9.4733e+01	3m5rA/T0561-3m5rA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1p5zB	9.6365e+01	1p5zB/T0561-1p5zB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.1
2od4A	9.6898e+01	2od4A/T0561-2od4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.58.4.20
1gtvA	9.7829e+01	1gtvA/T0561-1gtvA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3d19A	9.8000e+01	3d19A/T0561-3d19A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.29.13.1 a.29.13.1
2f48A	9.9253e+01	2f48A/T0561-2f48A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.89.1.1
1hssA	1.0250e+02	1hssA/T0561-1hssA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2i2cA	1.0267e+02	2i2cA/T0561-2i2cA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001