Best Alignments for T0561

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2dwkA	6.9355e+00	2dwkA/T0561-2dwkA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1uj2A	1.0522e+01	1uj2A/T0561-1uj2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.6
1svmA	2.8143e+01	1svmA/T0561-1svmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.20
1xrjA	3.0495e+01	1xrjA/T0561-1xrjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.6
3a7sA	3.6129e+01	3a7sA/T0561-3a7sA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2oa4A	3.6211e+01	2oa4A/T0561-2oa4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.12.3
2avwA	4.0370e+01	2avwA/T0561-2avwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3h8lA	4.3734e+01	3h8lA/T0561-3h8lA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1y08A	4.8283e+01	1y08A/T0561-1y08A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.3.1.12
3cjwA	5.5055e+01	3cjwA/T0561-3cjwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1okcA	6.5521e+01	1okcA/T0561-1okcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	f.42.1.1
3e9nA	6.8005e+01	3e9nA/T0561-3e9nA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3g1lA	7.2225e+01	3g1lA/T0561-3g1lA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2wa0A	7.3814e+01	2wa0A/T0561-2wa0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ahfA	7.7666e+01	2ahfA/T0561-2ahfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3d19A	8.1163e+01	3d19A/T0561-3d19A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.29.13.1 a.29.13.1
3m5rA	8.6196e+01	3m5rA/T0561-3m5rA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1x2mA	8.9237e+01	1x2mA/T0561-1x2mA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2vbfA	9.4366e+01	2vbfA/T0561-2vbfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2rkhA	9.5358e+01	2rkhA/T0561-2rkhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001