Please cite the following papers:
When SAM_T08 finishes loading, you should see links to
You may also view the list of files created so far. This link gives access to the full directory of file produced, including query progress logs, and this html file (summary.html). When the process is finished, you may want to download the entire directory to your computer, using a tool such as "wget".
Description | Link to file | Date |
Inputs |
Submitted sequence(s) | T0581.a2m | 2010 Jun 8 10:17:57 |
README file | README | 2010 Jun 8 12:13:19 |
Quick blastp of non-redundant PDB | T0581.pdb_blast.txt | 2010 Jun 8 12:13:41 |
Multiple alignment |
SAM_t06 multiple alignment in a2m format | T0581.t06.a2m.gz | 2010 Jun 8 12:29:56 |
SAM_t06 multiple alignment in pretty html format | T0581.t06.pa.html | 2010 Jun 8 12:30:08 |
SAM_t06 target hidden Markov model | T0581.t06.w0.5.mod | 2010 Jun 8 12:30:17 |
SAM_t06 multiple alignment---sequence logo (eps format) (pdf format) | T0581.t06.w0.5-logo | 2010 Jun 8 12:30:30 |
SAM_t06 consensus sequence | T0581.t06.w0.5.maxp | 2010 Jun 8 12:30:32 |
Script for highlighting in rasmol | conserved_t06 | 2010 Jun 8 12:30:33 |
SAM_t04 multiple alignment in a2m format | T0581.t04.a2m.gz | 2010 Jun 8 12:38:47 |
SAM_t04 multiple alignment in pretty html format | T0581.t04.pa.html | 2010 Jun 8 12:38:55 |
SAM_t04 target hidden Markov model | T0581.t04.w0.5.mod | 2010 Jun 8 12:39:00 |
SAM_t04 multiple alignment---sequence logo (eps format) (pdf format) | T0581.t04.w0.5-logo | 2010 Jun 8 12:39:09 |
SAM_t04 consensus sequence | T0581.t04.w0.5.maxp | 2010 Jun 8 12:39:10 |
Script for highlighting in rasmol | conserved_t04 | 2010 Jun 8 12:39:11 |
SAM_t2k multiple alignment in a2m format | T0581.t2k.a2m.gz | 2010 Jun 8 12:41:52 |
SAM_t2k multiple alignment in pretty html format | T0581.t2k.pa.html | 2010 Jun 8 12:42:02 |
SAM_t2k target hidden Markov model | T0581.t2k.w0.5.mod | 2010 Jun 8 12:42:05 |
SAM_t2k multiple alignment---sequence logo (eps format) (pdf format) | T0581.t2k.w0.5-logo | 2010 Jun 8 12:42:16 |
SAM_t2k consensus sequence | T0581.t2k.w0.5.maxp | 2010 Jun 8 12:42:17 |
Script for highlighting in rasmol | conserved_t2k | 2010 Jun 8 12:42:18 |
Secondary Structure Prediction (Explanation of secondary-structure predictions) |
str4 structure prediction (rdb format) (seq format) | T0581.t06.str4 | 2010 Jun 8 12:42:35 |
Script for T0581.t06.str4 coloring in rasmol | T0581.t06.str4-color.rasmol | 2010 Jun 8 12:42:36 |
str4---sequence logo (eps format) (pdf format) | T0581.t06.str4-logo | 2010 Jun 8 12:42:57 |
str4 structure prediction (rdb format) (seq format) | T0581.t04.str4 | 2010 Jun 8 12:43:02 |
Script for T0581.t04.str4 coloring in rasmol | T0581.t04.str4-color.rasmol | 2010 Jun 8 12:43:03 |
str4---sequence logo (eps format) (pdf format) | T0581.t04.str4-logo | 2010 Jun 8 12:43:12 |
str4 structure prediction (rdb format) (seq format) | T0581.t2k.str4 | 2010 Jun 8 12:43:16 |
Script for T0581.t2k.str4 coloring in rasmol | T0581.t2k.str4-color.rasmol | 2010 Jun 8 12:43:16 |
str4---sequence logo (eps format) (pdf format) | T0581.t2k.str4-logo | 2010 Jun 8 12:43:26 |
str2 structure prediction (rdb format) (seq format) | T0581.t06.str2 | 2010 Jun 8 12:30:25 |
Script for T0581.t06.str2 coloring in rasmol | T0581.t06.str2-color.rasmol | 2010 Jun 8 12:43:30 |
str2---sequence logo (eps format) (pdf format) | T0581.t06.str2-logo | 2010 Jun 8 12:43:39 |
str2 structure prediction (rdb format) (seq format) | T0581.t04.str2 | 2010 Jun 8 12:39:05 |
Script for T0581.t04.str2 coloring in rasmol | T0581.t04.str2-color.rasmol | 2010 Jun 8 12:43:42 |
str2---sequence logo (eps format) (pdf format) | T0581.t04.str2-logo | 2010 Jun 8 12:43:48 |
str2 structure prediction (rdb format) (seq format) | T0581.t2k.str2 | 2010 Jun 8 12:42:11 |
Script for T0581.t2k.str2 coloring in rasmol | T0581.t2k.str2-color.rasmol | 2010 Jun 8 12:43:50 |
str2---sequence logo (eps format) (pdf format) | T0581.t2k.str2-logo | 2010 Jun 8 12:43:57 |
alpha structure prediction (rdb format) (seq format) | T0581.t06.alpha | 2010 Jun 8 12:44:02 |
Script for T0581.t06.alpha coloring in rasmol | T0581.t06.alpha-color.rasmol | 2010 Jun 8 12:44:02 |
alpha---sequence logo (eps format) (pdf format) | T0581.t06.alpha-logo | 2010 Jun 8 12:44:09 |
alpha structure prediction (rdb format) (seq format) | T0581.t04.alpha | 2010 Jun 8 12:44:13 |
Script for T0581.t04.alpha coloring in rasmol | T0581.t04.alpha-color.rasmol | 2010 Jun 8 12:44:14 |
alpha---sequence logo (eps format) (pdf format) | T0581.t04.alpha-logo | 2010 Jun 8 12:44:21 |
alpha structure prediction (rdb format) (seq format) | T0581.t2k.alpha | 2010 Jun 8 12:44:25 |
Script for T0581.t2k.alpha coloring in rasmol | T0581.t2k.alpha-color.rasmol | 2010 Jun 8 12:44:26 |
alpha---sequence logo (eps format) (pdf format) | T0581.t2k.alpha-logo | 2010 Jun 8 12:44:34 |
bys structure prediction (rdb format) (seq format) | T0581.t06.bys | 2010 Jun 8 12:44:39 |
Script for T0581.t06.bys coloring in rasmol | T0581.t06.bys-color.rasmol | 2010 Jun 8 12:44:39 |
bys---sequence logo (eps format) (pdf format) | T0581.t06.bys-logo | 2010 Jun 8 12:44:50 |
bys structure prediction (rdb format) (seq format) | T0581.t04.bys | 2010 Jun 8 12:44:53 |
Script for T0581.t04.bys coloring in rasmol | T0581.t04.bys-color.rasmol | 2010 Jun 8 12:44:53 |
bys---sequence logo (eps format) (pdf format) | T0581.t04.bys-logo | 2010 Jun 8 12:45:02 |
bys structure prediction (rdb format) (seq format) | T0581.t2k.bys | 2010 Jun 8 12:45:05 |
Script for T0581.t2k.bys coloring in rasmol | T0581.t2k.bys-color.rasmol | 2010 Jun 8 12:45:05 |
bys---sequence logo (eps format) (pdf format) | T0581.t2k.bys-logo | 2010 Jun 8 12:45:11 |
pb structure prediction (rdb format) (seq format) | T0581.t06.pb | 2010 Jun 8 12:45:16 |
Script for T0581.t06.pb coloring in rasmol | T0581.t06.pb-color.rasmol | 2010 Jun 8 12:45:16 |
pb---sequence logo (eps format) (pdf format) | T0581.t06.pb-logo | 2010 Jun 8 12:45:23 |
pb structure prediction (rdb format) (seq format) | T0581.t04.pb | 2010 Jun 8 12:45:26 |
Script for T0581.t04.pb coloring in rasmol | T0581.t04.pb-color.rasmol | 2010 Jun 8 12:45:27 |
pb---sequence logo (eps format) (pdf format) | T0581.t04.pb-logo | 2010 Jun 8 12:45:34 |
pb structure prediction (rdb format) (seq format) | T0581.t2k.pb | 2010 Jun 8 12:45:37 |
Script for T0581.t2k.pb coloring in rasmol | T0581.t2k.pb-color.rasmol | 2010 Jun 8 12:45:38 |
pb---sequence logo (eps format) (pdf format) | T0581.t2k.pb-logo | 2010 Jun 8 12:45:42 |
n_notor2 structure prediction (rdb format) (seq format) | T0581.t06.n_notor2 | 2010 Jun 8 12:45:47 |
Script for T0581.t06.n_notor2 coloring in rasmol | T0581.t06.n_notor2-color.rasmol | 2010 Jun 8 12:45:48 |
n_notor2---sequence logo (eps format) (pdf format) | T0581.t06.n_notor2-logo | 2010 Jun 8 12:45:56 |
n_notor2 structure prediction (rdb format) (seq format) | T0581.t04.n_notor2 | 2010 Jun 8 12:46:00 |
Script for T0581.t04.n_notor2 coloring in rasmol | T0581.t04.n_notor2-color.rasmol | 2010 Jun 8 12:46:00 |
n_notor2---sequence logo (eps format) (pdf format) | T0581.t04.n_notor2-logo | 2010 Jun 8 12:46:09 |
n_notor2 structure prediction (rdb format) (seq format) | T0581.t2k.n_notor2 | 2010 Jun 8 12:46:13 |
Script for T0581.t2k.n_notor2 coloring in rasmol | T0581.t2k.n_notor2-color.rasmol | 2010 Jun 8 12:46:14 |
n_notor2---sequence logo (eps format) (pdf format) | T0581.t2k.n_notor2-logo | 2010 Jun 8 12:46:20 |
n_notor structure prediction (rdb format) (seq format) | T0581.t06.n_notor | 2010 Jun 8 12:46:25 |
Script for T0581.t06.n_notor coloring in rasmol | T0581.t06.n_notor-color.rasmol | 2010 Jun 8 12:46:26 |
n_notor---sequence logo (eps format) (pdf format) | T0581.t06.n_notor-logo | 2010 Jun 8 12:46:32 |
n_notor structure prediction (rdb format) (seq format) | T0581.t04.n_notor | 2010 Jun 8 12:46:37 |
Script for T0581.t04.n_notor coloring in rasmol | T0581.t04.n_notor-color.rasmol | 2010 Jun 8 12:46:38 |
n_notor---sequence logo (eps format) (pdf format) | T0581.t04.n_notor-logo | 2010 Jun 8 12:46:42 |
n_notor structure prediction (rdb format) (seq format) | T0581.t2k.n_notor | 2010 Jun 8 12:46:46 |
Script for T0581.t2k.n_notor coloring in rasmol | T0581.t2k.n_notor-color.rasmol | 2010 Jun 8 12:46:47 |
n_notor---sequence logo (eps format) (pdf format) | T0581.t2k.n_notor-logo | 2010 Jun 8 12:46:52 |
n_sep structure prediction (rdb format) (seq format) | T0581.t06.n_sep | 2010 Jun 8 12:46:56 |
Script for T0581.t06.n_sep coloring in rasmol | T0581.t06.n_sep-color.rasmol | 2010 Jun 8 12:46:56 |
n_sep---sequence logo (eps format) (pdf format) | T0581.t06.n_sep-logo | 2010 Jun 8 12:47:04 |
n_sep structure prediction (rdb format) (seq format) | T0581.t04.n_sep | 2010 Jun 8 12:47:07 |
Script for T0581.t04.n_sep coloring in rasmol | T0581.t04.n_sep-color.rasmol | 2010 Jun 8 12:47:08 |
n_sep---sequence logo (eps format) (pdf format) | T0581.t04.n_sep-logo | 2010 Jun 8 12:47:15 |
n_sep structure prediction (rdb format) (seq format) | T0581.t2k.n_sep | 2010 Jun 8 12:47:20 |
Script for T0581.t2k.n_sep coloring in rasmol | T0581.t2k.n_sep-color.rasmol | 2010 Jun 8 12:47:21 |
n_sep---sequence logo (eps format) (pdf format) | T0581.t2k.n_sep-logo | 2010 Jun 8 12:47:27 |
o_notor2 structure prediction (rdb format) (seq format) | T0581.t06.o_notor2 | 2010 Jun 8 12:47:32 |
Script for T0581.t06.o_notor2 coloring in rasmol | T0581.t06.o_notor2-color.rasmol | 2010 Jun 8 12:47:33 |
o_notor2---sequence logo (eps format) (pdf format) | T0581.t06.o_notor2-logo | 2010 Jun 8 12:47:40 |
o_notor2 structure prediction (rdb format) (seq format) | T0581.t04.o_notor2 | 2010 Jun 8 12:47:44 |
Script for T0581.t04.o_notor2 coloring in rasmol | T0581.t04.o_notor2-color.rasmol | 2010 Jun 8 12:47:45 |
o_notor2---sequence logo (eps format) (pdf format) | T0581.t04.o_notor2-logo | 2010 Jun 8 12:47:50 |
o_notor2 structure prediction (rdb format) (seq format) | T0581.t2k.o_notor2 | 2010 Jun 8 12:47:54 |
Script for T0581.t2k.o_notor2 coloring in rasmol | T0581.t2k.o_notor2-color.rasmol | 2010 Jun 8 12:47:54 |
o_notor2---sequence logo (eps format) (pdf format) | T0581.t2k.o_notor2-logo | 2010 Jun 8 12:48:00 |
o_notor structure prediction (rdb format) (seq format) | T0581.t06.o_notor | 2010 Jun 8 12:48:05 |
Script for T0581.t06.o_notor coloring in rasmol | T0581.t06.o_notor-color.rasmol | 2010 Jun 8 12:48:06 |
o_notor---sequence logo (eps format) (pdf format) | T0581.t06.o_notor-logo | 2010 Jun 8 12:48:13 |
o_notor structure prediction (rdb format) (seq format) | T0581.t04.o_notor | 2010 Jun 8 12:48:16 |
Script for T0581.t04.o_notor coloring in rasmol | T0581.t04.o_notor-color.rasmol | 2010 Jun 8 12:48:17 |
o_notor---sequence logo (eps format) (pdf format) | T0581.t04.o_notor-logo | 2010 Jun 8 12:48:26 |
o_notor structure prediction (rdb format) (seq format) | T0581.t2k.o_notor | 2010 Jun 8 12:48:29 |
Script for T0581.t2k.o_notor coloring in rasmol | T0581.t2k.o_notor-color.rasmol | 2010 Jun 8 12:48:29 |
o_notor---sequence logo (eps format) (pdf format) | T0581.t2k.o_notor-logo | 2010 Jun 8 12:48:35 |
o_sep structure prediction (rdb format) (seq format) | T0581.t06.o_sep | 2010 Jun 8 12:48:39 |
Script for T0581.t06.o_sep coloring in rasmol | T0581.t06.o_sep-color.rasmol | 2010 Jun 8 12:48:39 |
o_sep---sequence logo (eps format) (pdf format) | T0581.t06.o_sep-logo | 2010 Jun 8 12:48:46 |
o_sep structure prediction (rdb format) (seq format) | T0581.t04.o_sep | 2010 Jun 8 12:48:49 |
Script for T0581.t04.o_sep coloring in rasmol | T0581.t04.o_sep-color.rasmol | 2010 Jun 8 12:48:50 |
o_sep---sequence logo (eps format) (pdf format) | T0581.t04.o_sep-logo | 2010 Jun 8 12:48:56 |
o_sep structure prediction (rdb format) (seq format) | T0581.t2k.o_sep | 2010 Jun 8 12:49:00 |
Script for T0581.t2k.o_sep coloring in rasmol | T0581.t2k.o_sep-color.rasmol | 2010 Jun 8 12:49:01 |
o_sep---sequence logo (eps format) (pdf format) | T0581.t2k.o_sep-logo | 2010 Jun 8 12:49:07 |
dssp-ehl2 structure prediction (rdb format) (seq format) | T0581.t06.dssp-ehl2 | 2010 Jun 8 12:49:13 |
Script for T0581.t06.dssp-ehl2 coloring in rasmol | T0581.t06.dssp-ehl2-color.rasmol | 2010 Jun 8 12:49:14 |
dssp-ehl2---sequence logo (eps format) (pdf format) | T0581.t06.dssp-ehl2-logo | 2010 Jun 8 12:49:21 |
dssp-ehl2 structure prediction (rdb format) (seq format) | T0581.t04.dssp-ehl2 | 2010 Jun 8 12:49:24 |
Script for T0581.t04.dssp-ehl2 coloring in rasmol | T0581.t04.dssp-ehl2-color.rasmol | 2010 Jun 8 12:49:24 |
dssp-ehl2---sequence logo (eps format) (pdf format) | T0581.t04.dssp-ehl2-logo | 2010 Jun 8 12:49:32 |
dssp-ehl2 structure prediction (rdb format) (seq format) | T0581.t2k.dssp-ehl2 | 2010 Jun 8 12:49:35 |
Script for T0581.t2k.dssp-ehl2 coloring in rasmol | T0581.t2k.dssp-ehl2-color.rasmol | 2010 Jun 8 12:49:36 |
dssp-ehl2---sequence logo (eps format) (pdf format) | T0581.t2k.dssp-ehl2-logo | 2010 Jun 8 12:49:42 |
dssp-ehl2 structure prediction (rdb format) (seq format) | T0581.dssp-ehl2 | 2010 Jun 8 12:49:47 |
Script for T0581.dssp-ehl2 coloring in rasmol | T0581.dssp-ehl2-color.rasmol | 2010 Jun 8 12:49:47 |
dssp-ehl2---sequence logo (eps format) (pdf format) | T0581.dssp-ehl2-logo | 2010 Jun 8 12:49:53 |
CB_burial_14_7 structure prediction (rdb format) (seq format) | T0581.t06.CB_burial_14_7 | 2010 Jun 8 12:49:59 |
Script for T0581.t06.CB_burial_14_7 coloring in rasmol | T0581.t06.CB_burial_14_7-color.rasmol | 2010 Jun 8 12:50:00 |
CB_burial_14_7---sequence logo (eps format) (pdf format) | T0581.t06.CB_burial_14_7-logo | 2010 Jun 8 12:50:05 |
CB_burial_14_7 structure prediction (rdb format) (seq format) | T0581.t04.CB_burial_14_7 | 2010 Jun 8 12:50:09 |
Script for T0581.t04.CB_burial_14_7 coloring in rasmol | T0581.t04.CB_burial_14_7-color.rasmol | 2010 Jun 8 12:50:10 |
CB_burial_14_7---sequence logo (eps format) (pdf format) | T0581.t04.CB_burial_14_7-logo | 2010 Jun 8 12:50:15 |
CB_burial_14_7 structure prediction (rdb format) (seq format) | T0581.t2k.CB_burial_14_7 | 2010 Jun 8 12:50:19 |
Script for T0581.t2k.CB_burial_14_7 coloring in rasmol | T0581.t2k.CB_burial_14_7-color.rasmol | 2010 Jun 8 12:50:20 |
CB_burial_14_7---sequence logo (eps format) (pdf format) | T0581.t2k.CB_burial_14_7-logo | 2010 Jun 8 12:50:27 |
near-backbone-11 structure prediction (rdb format) (seq format) | T0581.t06.near-backbone-11 | 2010 Jun 8 12:50:32 |
Script for T0581.t06.near-backbone-11 coloring in rasmol | T0581.t06.near-backbone-11-color.rasmol | 2010 Jun 8 12:50:33 |
near-backbone-11---sequence logo (eps format) (pdf format) | T0581.t06.near-backbone-11-logo | 2010 Jun 8 12:50:42 |
near-backbone-11 structure prediction (rdb format) (seq format) | T0581.t04.near-backbone-11 | 2010 Jun 8 12:50:46 |
Script for T0581.t04.near-backbone-11 coloring in rasmol | T0581.t04.near-backbone-11-color.rasmol | 2010 Jun 8 12:50:46 |
near-backbone-11---sequence logo (eps format) (pdf format) | T0581.t04.near-backbone-11-logo | 2010 Jun 8 12:50:50 |
near-backbone-11 structure prediction (rdb format) (seq format) | T0581.t2k.near-backbone-11 | 2010 Jun 8 12:50:54 |
Script for T0581.t2k.near-backbone-11 coloring in rasmol | T0581.t2k.near-backbone-11-color.rasmol | 2010 Jun 8 12:50:54 |
near-backbone-11---sequence logo (eps format) (pdf format) | T0581.t2k.near-backbone-11-logo | 2010 Jun 8 12:50:59 |
CB8-sep9 structure prediction (rdb format) (seq format) | T0581.t06.CB8-sep9 | 2010 Jun 8 12:51:05 |
Script for T0581.t06.CB8-sep9 coloring in rasmol | T0581.t06.CB8-sep9-color.rasmol | 2010 Jun 8 12:51:05 |
CB8-sep9---sequence logo (eps format) (pdf format) | T0581.t06.CB8-sep9-logo | 2010 Jun 8 12:51:11 |
CB8-sep9 structure prediction (rdb format) (seq format) | T0581.t04.CB8-sep9 | 2010 Jun 8 12:51:15 |
Script for T0581.t04.CB8-sep9 coloring in rasmol | T0581.t04.CB8-sep9-color.rasmol | 2010 Jun 8 12:51:16 |
CB8-sep9---sequence logo (eps format) (pdf format) | T0581.t04.CB8-sep9-logo | 2010 Jun 8 12:51:21 |
CB8-sep9 structure prediction (rdb format) (seq format) | T0581.t2k.CB8-sep9 | 2010 Jun 8 12:51:25 |
Script for T0581.t2k.CB8-sep9 coloring in rasmol | T0581.t2k.CB8-sep9-color.rasmol | 2010 Jun 8 12:51:25 |
CB8-sep9---sequence logo (eps format) (pdf format) | T0581.t2k.CB8-sep9-logo | 2010 Jun 8 12:51:32 |
Target model scores |
amino acid single-track target model scores of PDB | T0581.t06-w0.5-scores.html | 2010 Jun 8 12:56:05 |
amino acid single-track target model scores of PDB | T0581.t04-w0.5-scores.html | 2010 Jun 8 12:59:35 |
amino acid single-track target model scores of PDB | T0581.t2k-w0.5-scores.html | 2010 Jun 8 13:03:11 |
amino acid/w0.5-1-str4-0.1 multi-track target model scores | T0581.t06-w0.5-1-str4-0.1-scores.html | 2010 Jun 8 13:05:29 |
amino acid/w0.5-1-str2-0.1 multi-track target model scores | T0581.t06-w0.5-1-str2-0.1-scores.html | 2010 Jun 8 13:07:39 |
amino acid/w0.5-1-alpha-0.1 multi-track target model scores | T0581.t06-w0.5-1-alpha-0.1-scores.html | 2010 Jun 8 13:09:50 |
amino acid/w0.5-1-bys-0.1 multi-track target model scores | T0581.t06-w0.5-1-bys-0.1-scores.html | 2010 Jun 8 13:12:01 |
amino acid/w0.5-1-pb-0.1 multi-track target model scores | T0581.t06-w0.5-1-pb-0.1-scores.html | 2010 Jun 8 13:14:10 |
amino acid/w0.5-1-n_notor2-0.1 multi-track target model scores | T0581.t06-w0.5-1-n_notor2-0.1-scores.html | 2010 Jun 8 13:16:23 |
amino acid/w0.5-1-n_notor-0.1 multi-track target model scores | T0581.t06-w0.5-1-n_notor-0.1-scores.html | 2010 Jun 8 13:18:33 |
amino acid/w0.5-1-n_sep-0.1 multi-track target model scores | T0581.t06-w0.5-1-n_sep-0.1-scores.html | 2010 Jun 8 13:20:43 |
amino acid/w0.5-1-o_notor2-0.1 multi-track target model scores | T0581.t06-w0.5-1-o_notor2-0.1-scores.html | 2010 Jun 8 13:22:52 |
amino acid/w0.5-1-o_notor-0.1 multi-track target model scores | T0581.t06-w0.5-1-o_notor-0.1-scores.html | 2010 Jun 8 13:25:03 |
amino acid/w0.5-1-o_sep-0.1 multi-track target model scores | T0581.t06-w0.5-1-o_sep-0.1-scores.html | 2010 Jun 8 13:27:15 |
amino acid/w0.5-1-dssp-ehl2-0.1 multi-track target model scores | T0581.t06-w0.5-1-dssp-ehl2-0.1-scores.html | 2010 Jun 8 13:29:23 |
amino acid/w0.5-1-CB_burial_14_7-0.3 multi-track target model scores | T0581.t06-w0.5-1-CB_burial_14_7-0.3-scores.html | 2010 Jun 8 13:31:35 |
amino acid/w0.5-1-near-backbone-11-0.3 multi-track target model scores | T0581.t06-w0.5-1-near-backbone-11-0.3-scores.html | 2010 Jun 8 13:33:48 |
amino acid/w0.5-1-CB8-sep9-0.3 multi-track target model scores | T0581.t06-w0.5-1-CB8-sep9-0.3-scores.html | 2010 Jun 8 13:35:57 |
amino acid/80-60-80-str2+near-backbone-11 multi-track target model scores | T0581.t06-80-60-80-str2+near-backbone-11-scores.html | 2010 Jun 8 13:38:24 |
amino acid/w0.5-1-str4-0.1 multi-track target model scores | T0581.t04-w0.5-1-str4-0.1-scores.html | 2010 Jun 8 13:40:51 |
amino acid/w0.5-1-str2-0.1 multi-track target model scores | T0581.t04-w0.5-1-str2-0.1-scores.html | 2010 Jun 8 13:43:11 |
amino acid/w0.5-1-alpha-0.1 multi-track target model scores | T0581.t04-w0.5-1-alpha-0.1-scores.html | 2010 Jun 8 13:45:34 |
amino acid/w0.5-1-bys-0.1 multi-track target model scores | T0581.t04-w0.5-1-bys-0.1-scores.html | 2010 Jun 8 13:48:02 |
amino acid/w0.5-1-pb-0.1 multi-track target model scores | T0581.t04-w0.5-1-pb-0.1-scores.html | 2010 Jun 8 13:50:23 |
amino acid/w0.5-1-n_notor2-0.1 multi-track target model scores | T0581.t04-w0.5-1-n_notor2-0.1-scores.html | 2010 Jun 8 13:52:50 |
amino acid/w0.5-1-n_notor-0.1 multi-track target model scores | T0581.t04-w0.5-1-n_notor-0.1-scores.html | 2010 Jun 8 13:55:09 |
amino acid/w0.5-1-n_sep-0.1 multi-track target model scores | T0581.t04-w0.5-1-n_sep-0.1-scores.html | 2010 Jun 8 13:57:29 |
amino acid/w0.5-1-o_notor2-0.1 multi-track target model scores | T0581.t04-w0.5-1-o_notor2-0.1-scores.html | 2010 Jun 8 13:59:53 |
amino acid/w0.5-1-o_notor-0.1 multi-track target model scores | T0581.t04-w0.5-1-o_notor-0.1-scores.html | 2010 Jun 8 14:02:12 |
amino acid/w0.5-1-o_sep-0.1 multi-track target model scores | T0581.t04-w0.5-1-o_sep-0.1-scores.html | 2010 Jun 8 14:04:30 |
amino acid/w0.5-1-dssp-ehl2-0.1 multi-track target model scores | T0581.t04-w0.5-1-dssp-ehl2-0.1-scores.html | 2010 Jun 8 14:06:48 |
amino acid/w0.5-1-CB_burial_14_7-0.3 multi-track target model scores | T0581.t04-w0.5-1-CB_burial_14_7-0.3-scores.html | 2010 Jun 8 14:09:09 |
amino acid/w0.5-1-near-backbone-11-0.3 multi-track target model scores | T0581.t04-w0.5-1-near-backbone-11-0.3-scores.html | 2010 Jun 8 14:11:33 |
amino acid/w0.5-1-CB8-sep9-0.3 multi-track target model scores | T0581.t04-w0.5-1-CB8-sep9-0.3-scores.html | 2010 Jun 8 14:13:58 |
amino acid/80-60-80-str2+near-backbone-11 multi-track target model scores | T0581.t04-80-60-80-str2+near-backbone-11-scores.html | 2010 Jun 8 14:16:33 |
amino acid/w0.5-1-str4-0.1 multi-track target model scores | T0581.t2k-w0.5-1-str4-0.1-scores.html | 2010 Jun 8 14:19:09 |
amino acid/w0.5-1-str2-0.1 multi-track target model scores | T0581.t2k-w0.5-1-str2-0.1-scores.html | 2010 Jun 8 14:21:40 |
amino acid/w0.5-1-alpha-0.1 multi-track target model scores | T0581.t2k-w0.5-1-alpha-0.1-scores.html | 2010 Jun 8 14:24:12 |
amino acid/w0.5-1-bys-0.1 multi-track target model scores | T0581.t2k-w0.5-1-bys-0.1-scores.html | 2010 Jun 8 14:26:42 |
amino acid/w0.5-1-pb-0.1 multi-track target model scores | T0581.t2k-w0.5-1-pb-0.1-scores.html | 2010 Jun 8 14:29:16 |
amino acid/w0.5-1-n_notor2-0.1 multi-track target model scores | T0581.t2k-w0.5-1-n_notor2-0.1-scores.html | 2010 Jun 8 14:31:50 |
amino acid/w0.5-1-n_notor-0.1 multi-track target model scores | T0581.t2k-w0.5-1-n_notor-0.1-scores.html | 2010 Jun 8 14:34:24 |
amino acid/w0.5-1-n_sep-0.1 multi-track target model scores | T0581.t2k-w0.5-1-n_sep-0.1-scores.html | 2010 Jun 8 14:36:55 |
amino acid/w0.5-1-o_notor2-0.1 multi-track target model scores | T0581.t2k-w0.5-1-o_notor2-0.1-scores.html | 2010 Jun 8 14:39:26 |
amino acid/w0.5-1-o_notor-0.1 multi-track target model scores | T0581.t2k-w0.5-1-o_notor-0.1-scores.html | 2010 Jun 8 14:41:59 |
amino acid/w0.5-1-o_sep-0.1 multi-track target model scores | T0581.t2k-w0.5-1-o_sep-0.1-scores.html | 2010 Jun 8 14:44:31 |
amino acid/w0.5-1-dssp-ehl2-0.1 multi-track target model scores | T0581.t2k-w0.5-1-dssp-ehl2-0.1-scores.html | 2010 Jun 8 14:47:05 |
amino acid/w0.5-1-CB_burial_14_7-0.3 multi-track target model scores | T0581.t2k-w0.5-1-CB_burial_14_7-0.3-scores.html | 2010 Jun 8 14:49:40 |
amino acid/w0.5-1-near-backbone-11-0.3 multi-track target model scores | T0581.t2k-w0.5-1-near-backbone-11-0.3-scores.html | 2010 Jun 8 14:52:11 |
amino acid/w0.5-1-CB8-sep9-0.3 multi-track target model scores | T0581.t2k-w0.5-1-CB8-sep9-0.3-scores.html | 2010 Jun 8 14:54:44 |
amino acid/80-60-80-str2+near-backbone-11 multi-track target model scores | T0581.t2k-80-60-80-str2+near-backbone-11-scores.html | 2010 Jun 8 14:57:27 |
Template model scores |
Annotated t06 template model scores | T0581.t06-template-lib-scores.html | 2010 Jun 8 18:21:36 |
Annotated t04 template model scores | T0581.t04-template-lib-scores.html | 2010 Jun 8 22:31:42 |
Annotated t2k template model scores | T0581.t2k-template-lib-scores.html | 2010 Jun 9 2:35:19 |
Top Hits |
Best scoring hits from t06 HMMs | T0581.t06.best-scores.html | 2010 Jun 9 2:40:26 |
Best scoring hits from t04 HMMs | T0581.t04.best-scores.html | 2010 Jun 9 2:43:57 |
Best scoring hits from t2k HMMs | T0581.t2k.best-scores.html | 2010 Jun 9 2:47:28 |
Best scoring hits from combining t06 t04 t2k | T0581.best-scores-all.html | 2010 Jun 9 2:47:32 |
Alignments for Top Hits |
Top alignments from t06 hits | T0581.t06.top_reported_alignments.html | 2010 Jun 9 4:31:30 |
Top alignments from t04 hits | T0581.t04.top_reported_alignments.html | 2010 Jun 9 4:31:32 |
Top alignments from t2k hits | T0581.t2k.top_reported_alignments.html | 2010 Jun 9 4:31:36 |
Top alignments from combined hits | T0581.top_reported_alignments.html | 2010 Jun 9 4:31:39 |
multiple alignment of templates (a2m.gz format) (pa format) | all-align | 2010 Jun 9 4:33:26 |
Undertaker (3d) files |
Undertaker input for top t06 alignments | T0581.t06.undertaker-align.under | 2010 Jun 9 4:41:15 |
Undertaker input for top t04 alignments | T0581.t04.undertaker-align.under | 2010 Jun 9 4:41:17 |
Undertaker input for top t2k alignments | T0581.t2k.undertaker-align.under | 2010 Jun 9 4:41:18 |
Undertaker input for top combined alignments | T0581.undertaker-align.under | 2010 Jun 9 4:41:21 |
PDB file with model(s) for top alignments | T0581.undertaker-align.pdb.gz | 2010 Jun 9 4:46:39 |
Images of an (incomplete) model created by sidechain replacement on the backbone of the highest scoring template.
Coloring is defined by ehl2, to show predicted secondary structure (red for helix, yellow for strand, blue for turn, grey for other).
Front | Top | Side |
500x500 | 500x500 | 500x500 |
Fragment list for undertaker (from fragfinder) | T0581.t06.many.frag.gz | 2010 Jun 9 4:47:41 |
Fragment list for undertaker (from fragfinder) | T0581.t04.many.frag.gz | 2010 Jun 9 4:48:18 |
Fragment list for undertaker (from fragfinder) | T0581.t2k.many.frag.gz | 2010 Jun 9 4:48:55 |
Contact predictions, based on predicted burial (near-backbone-11), predicted secondary structure(str2), predicted H-bonds (n_sep), amino acid profile, log(protein length), log(separation) |
contact predictions (rr format) (rr.nn1000.constraints format) (rr.rasmol format) | T0581.647_47 | 2010 Jun 9 4:59:11 |
contact predictions (rr format) (rr.nn1000.constraints format) (rr.rasmol format) | T0581.730_47 | 2010 Jun 9 4:59:20 |
contact predictions (rr format) (rr.nn1000.constraints format) (rr.rasmol format) | T0581.648_17.730_47 | 2010 Jun 9 4:59:30 |
Distance constraints extracted from alignments |
Constraints from alignment | align.constraints | 2010 Jun 9 5:12:28 |
Rejected constraints | rejected_bonus.constraints | 2010 Jun 9 5:12:28 |
Noncontact constraints | noncontact.constraints | 2010 Jun 9 5:12:29 |
First attempted model using undertaker | decoys/T0581.try1-opt3.pdb.gz | 2010 Jun 9 7:23:29 |
Images of complete model in decoys/T0581.try1-opt3.pdb.gz
Coloring is defined by the dssp rasmol script, to show predicted secondary structure (red for helix, yellow for strand, blue for turn, grey for other).
Front | Top | Side |
500x500 | 500x500 | 500x500 |
Gzipped tarball of all the files | T0581.tgz | 2010 Jun 9 7:35:45 |
Please cite the following papers:
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based on prior designs by Kevin Karplus, Alex Williams, and Rachel Karchin.
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