(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0581
    • gi|66044629|ref|YP_234470.1|_1:138 hypothetical protein Psyr_1381 [Pseudomonas syringae pv. syringae B728a]
    • gi|63255336|gb|AAY36432.1| conserved hypothetical protein [Pseudomonas syringae pv. syringae B728a]
    • gi|167032247|ref|YP_001667478.1|_1:138 hypothetical protein PputGB1_1235 [Pseudomonas putida GB-1]
    • gi|166858735|gb|ABY97142.1| conserved hypothetical protein [Pseudomonas putida GB-1]
    • gi|148549290|ref|YP_001269392.1|_1:138 hypothetical protein Pput_4084 [Pseudomonas putida F1]
    • gi|148513348|gb|ABQ80208.1| hypothetical protein Pput_4084 [Pseudomonas putida F1]
    • gi|170723187|ref|YP_001750875.1|_1:138 hypothetical protein PputW619_4026 [Pseudomonas putida W619]
    • gi|169761190|gb|ACA74506.1| conserved hypothetical protein [Pseudomonas putida W619]
    • gi|70728617|ref|YP_258366.1|_1:140 hypothetical protein PFL_1235 [Pseudomonas fluorescens Pf-5]
    • gi|68342916|gb|AAY90522.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
    • gi|226945894|ref|YP_002800967.1|_1:132 hypothetical protein Avin_38510 [Azotobacter vinelandii DJ]
    • gi|226720821|gb|ACO79992.1| conserved hypothetical protein [Azotobacter vinelandii DJ]
    • gi|146306319|ref|YP_001186784.1|_1:133 hypothetical protein Pmen_1287 [Pseudomonas mendocina ymp]
    • gi|145574520|gb|ABP84052.1| hypothetical protein Pmen_1287 [Pseudomonas mendocina ymp]
    • gi|77457407|ref|YP_346912.1|_1:140 hypothetical protein Pfl01_1180 [Pseudomonas fluorescens Pf0-1]
    • gi|77381410|gb|ABA72923.1| putative exported protein [Pseudomonas fluorescens Pf0-1]
    • gi|146281887|ref|YP_001172040.1|_1:130 hypothetical protein PST_1513 [Pseudomonas stutzeri A1501]
    • gi|145570092|gb|ABP79198.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
                 10               20        30        40        50     
                 |                |         |         |         |     
   1 MSRF.MAL..ALCFV..L..P..TA.AHAASLKDFELSKMLEKVAKESSVGTPRAINEDILDQGY
   2 MSRF.MAL..ALCFV..L..P..TA.AHAASLKDFELSKMLEKVAKESSVGTPRAINEDILDQGY
   3 MSRL.MAL..ALCFV..L..P..TA.AHAASLKDFELSKMLEKVAKESSVGTPRAINEDILDQGY
   4 MSRF.MAL..ALCFV..L..P..TA.AHAASLKDFELSKMLEKVAKESSVGTPRAINEDILDQGY
   5 MLRL.IVP..TLTLL..LvaP..LC.AQAASKQEFELSKMLEKVAKESSVGTPRAINEDILDQGY
   6 MLRL.IVP..TLTLL..LvtP..LC.AQAASKQEFELSKMLEKVAKESSVGTPRAINEDILDQGY
   7 MLRL.IAP..ALSLLlaL..P..LA.AQAASKQDYDLNKMLEKVAKESSVGTPRAINEDILDQGY
   8 MLRL.IVP..TLTLL..LvaP..LC.AQAASKQEFELSKMLEKVAKESSVGTPRAINEDILDQGY
   9 MLRL.IVP..TLTLL..LvaP..LC.AQAASKQDFELSKMLEKVAKESSVGTPRAINEDILDQGY
  10 MLRL.IAP..ALSLLlaL..P..LA.AQAASKQDYDLNTLLQKVAKESSVGTPRAINEDILDQGY
  11 MLRR.IVP..ALCLLlaL..P..LA.AQAASKQEYDLNNMLQKVAKESSVGTPRAINEDILDQGY
  12 MLRV.IAP..TLSLLlaL..P..LA.AQAASKQEYELTQMLEKVAKESSVGTPRAINEDILDQGY
  13 MLRL.IAP..ALSLLlaL..P..LA.AQAASKQDYDLNTLLQKVAKESSVGTPRAINEDILDQGY
  14 MLRL.IVP..TLSLLltL..P..LA.AQAASKQEFELNKMLEKVAKESSVGTPRAINEDILDQGY
  15 MLRL.IAP..TLTLL..LvaP..LC.AQAASKQEFELSKMLEKVAKESSVGTPRAINEDILDQGY
  16 MSRF.MAL..ALCFV..L..P..TA.AHAASLKDFELSKMLEKVAKESSVGTPRAINEDILDQGY
  17 MLRF.TIP..TVALLlaL..P..LG.AQAASLQEFELGKMLEKVAAESNVGTPREINENILDQGY
  18 MLRP.TAL..TLCLL..L..P..AT.ALAASLKDYELTRMLEKVAKESSIGTPRAINEDILDQGY
  19 MLRY.TLP..ALALG..L..M..LAtAQAASLKEMELTRTLEQVARQSSEGTPRAINEDILDQGY
  20 MLRL.IVP..TAAIL..L..AssFS.AQAASLSEQNLNRELRNVAAQSSVGTPRAINEDILDQGY
  21 MYRLtTLL..ALSLA..L..P..V-.AHAASLQEQQLSQLLDQVARESNVGTPRAINEDILDQGY
  22 MLRF.VAPsvALALV..L..P..VC.AQAASLLEAQMNRKLQSVAAESNKDLPREIDEKTLEVAY


          60        70        80        90       100       110       12
          |         |         |         |         |         |         
   1 TVE.GNQLINHLSVRASHAERMRSNPDSVRSQLGDSVCSNTGYRQLLARGAILTYSFTEYKTNQP
   2 TVE.GNQLINHLSVRASHAERMRSNPDSVRSQLGDSVCSNTGYRQLLARGAILTYSFTEYKTNQP
   3 TVE.GNQLINHLSVRASHAERMRSNPDSVRSQLGDSVCSNTGYRQLLARGAILTYSFTEYKTNQP
   4 TVE.GNQLINHLSVRASHAERMRSNPDSVRSQLGDSVCSNTGYRQLLARGAILTYSFTEYKTNQP
   5 TVS.GNELINHLSVREGQAQQMRANPDVMRNQLGNSVCHNNGFRQLMTKGAVLKYQFTEYKTNRP
   6 TVS.GNQLINHLSVREGQAQQMRANPDVMRNQLGNSVCHNNGFRQLMTKGAVLKYQFTEYKTNRP
   7 TVE.GKALVNHLSVRQSHAERMQANPAQVRSQLGDSVCRNSGFRNLMSKGAVMVYRFTVYKTNQP
   8 TVS.GNQLINHLSVREGQAQQMRANPDVMRNQLGNSVCHNNGFRQLMTKGAVLKYQFTEYKTNRP
   9 TVS.GNQLINHLSVREGQAQQMRANPDVMRNQLGNSVCHNNGFRQLMTKGAVLKYQFTEYKTNRP
  10 TVE.GKALVNHLSVRQSHAARMQANPEQVRSQLGDSVCRNNGFRNLMSKGAVMVYRFTVYKTNQP
  11 TVE.GKALVNHLSVRQDHAARMQANPEQVRSQLGDSVCRNSGFRNLMSKGAVMVYRFTVYKTNQP
  12 TVEkGKALVNHLSVRESHAERMRENPQLVRSQLGDSVCRNNGYRQLMSKGAVLVYRFTVYKTNQP
  13 TVE.GKALVNHLSVRQSHAARMQANPEQVRSQLGDSVCRNNGFRNLMSKGAVMVYRFTVYKTNQP
  14 TVE.GKALVNHLSVRAEHAARMQQNAEQVRSQLGDSVCRNSGYRNLMSKGAVMVYRFTVYKTNQP
  15 TVT.GNQLINHLSVREGQASQMRANPDVMRNQLGNSVCHNNGFRQLMTKGAVLKYQFTEYKTNRP
  16 TVE.GNQLINHLSVRASHAERMRSNPDSVRSQLGDSVFSNTGYRQLLARGAILTYSFTEYKTNQP
  17 TVE.GKELINHLSVQSGHAEQMRANPKAVYLQLGASVCRNPNYRKLMAKGAIMRYEFTENRTNRP
  18 TVE.GNELINHLSVRTSHAQQMRAHPDAVRNQLLGSVCSNRGFRQLLAQGAVLRYQFSEYQSNRP
  19 TVE.GHTLINHLSVREAHAAQMRGNPDTVRSQLAASVCRNPGYRSLLAQGAQLRYQFSEYRSNRP
  20 TVE.GTTLVNHLSVQKSHADKMRADPKAVYFQLGASVCNNPSYRKLMAKGAIMRYDFTEVKTNKA
  21 TVE.NNQLVNHLSVQPRHAAQMRDNPADVRSQLAVSVCGNEGLRKLMSQGAVLRYDFSEYQSNKP
  22 TVE.GMQLIDHLSVLPDRAEQMRANPKAVYFQLGQSVCLNKGYRELMAKGAVMRYEITENKTNRP


      0       130             
     |         |             
   1 VATERFDAGSCR..IQ....GKK.
   2 VATERFDAGSCR..IQ....GKK.
   3 VATERFDAGSCR..IQ....GKK.
   4 VATERFDAGSCR..IQ....GKKg
   5 VATQTFQASDCT..VK....PKK.
   6 VATQTFQASDCT..VK....PKQ.
   7 IMDQAFDSASCV..AG....NKKk
   8 VVTQTFQASDCT..VK....PKQ.
   9 VATQTFQASDCT..VK....AKK.
  10 VMDQAFDNASCV..AG....NKKk
  11 IMDQAFDNASCV..AG....NKKk
  12 VMDQAFDAASCA..SG....NKKk
  13 VMDQAFDNASCL..AG....NKKk
  14 VMDQAFDAASCT..AG....NKKk
  15 VAAQTFQASDCA..AK....PKQ.
  16 VATERFDAGSCR..IQ....K--.
  17 VASARFQESDCP..AQstp.KKK.
  18 VTTERYRAADCN..L-....---.
  19 VTVEVFDKSDCG..L-....---.
  20 IGSASYQESDCPkaAPa...KKK.
  21 IASERYTAADCK..--....---.
  22 VASVKFVEADCP..APaaakKKK.