(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0581
    • gi|167032247|ref|YP_001667478.1|_3:138 hypothetical protein PputGB1_1235 [Pseudomonas putida GB-1]
    • gi|166858735|gb|ABY97142.1| conserved hypothetical protein [Pseudomonas putida GB-1]
    • gi|66044629|ref|YP_234470.1|_3:137 hypothetical protein Psyr_1381 [Pseudomonas syringae pv. syringae B728a]
    • gi|63255336|gb|AAY36432.1| conserved hypothetical protein [Pseudomonas syringae pv. syringae B728a]
    • gi|148549290|ref|YP_001269392.1|_3:138 hypothetical protein Pput_4084 [Pseudomonas putida F1]
    • gi|148513348|gb|ABQ80208.1| hypothetical protein Pput_4084 [Pseudomonas putida F1]
    • gi|170723187|ref|YP_001750875.1|_3:138 hypothetical protein PputW619_4026 [Pseudomonas putida W619]
    • gi|169761190|gb|ACA74506.1| conserved hypothetical protein [Pseudomonas putida W619]
    • gi|70728617|ref|YP_258366.1|_4:135 hypothetical protein PFL_1235 [Pseudomonas fluorescens Pf-5]
    • gi|68342916|gb|AAY90522.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
    • gi|226945894|ref|YP_002800967.1|_2:130 hypothetical protein Avin_38510 [Azotobacter vinelandii DJ]
    • gi|226720821|gb|ACO79992.1| conserved hypothetical protein [Azotobacter vinelandii DJ]
    • gi|77457407|ref|YP_346912.1|_3:133 hypothetical protein Pfl01_1180 [Pseudomonas fluorescens Pf0-1]
    • gi|77381410|gb|ABA72923.1| putative exported protein [Pseudomonas fluorescens Pf0-1]
    • gi|146281887|ref|YP_001172040.1|_2:130 hypothetical protein PST_1513 [Pseudomonas stutzeri A1501]
    • gi|145570092|gb|ABP79198.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
    • gi|146306319|ref|YP_001186784.1|_8:131 hypothetical protein Pmen_1287 [Pseudomonas mendocina ymp]
    • gi|145574520|gb|ABP84052.1| hypothetical protein Pmen_1287 [Pseudomonas mendocina ymp]
              10        20        30        40        50         60    
              |         |         |         |         |          |    
   1 MSRFMALALCFVLPTAAHAASLKDFELSKMLEKVAKESSVGTPRAINEDILDQGYTVE.GNQLIN
   2 RLIVPTLTLLLVAPLCAQAASKQEFELSKMLEKVAKESSVGTPRAINEDILDQGYTVS.GNELIN
   3 RLIAPALSLLLALPLAAQAASKQDYDLNKMLEKVAKESSVGTPRAINEDILDQGYTVE.GKALVN
   4 RLIVPTLTLLLVTPLCAQAASKQEFELSKMLEKVAKESSVGTPRAINEDILDQGYTVS.GNQLIN
   5 RLIVPTLTLLLVAPLCAQAASKQEFELSKMLEKVAKESSVGTPRAINEDILDQGYTVS.GNQLIN
   6 -SRFMALALCFVLPTAAHAASLKDFELSKMLEKVAKESSVGTPRAINEDILDQGYTVE.GNQLIN
   7 -SRFMALALCFVLPTAAHAASLKDFELSKMLEKVAKESSVGTPRAINEDILDQGYTVE.GNQLIN
   8 RLIVPTLTLLLVAPLCAQAASKQDFELSKMLEKVAKESSVGTPRAINEDILDQGYTVS.GNQLIN
   9 --RLMALALCFVLPTAAHAASLKDFELSKMLEKVAKESSVGTPRAINEDILDQGYTVE.GNQLIN
  10 RLIAPALSLLLALPLAAQAASKQDYDLNTLLQKVAKESSVGTPRAINEDILDQGYTVE.GKALVN
  11 RLIAPALSLLLALPLAAQAASKQDYDLNTLLQKVAKESSVGTPRAINEDILDQGYTVE.GKALVN
  12 RLIVPTLSLLLTLPLAAQAASKQEFELNKMLEKVAKESSVGTPRAINEDILDQGYTVE.GKALVN
  13 RLIAPTLTLLLVAPLCAQAASKQEFELSKMLEKVAKESSVGTPRAINEDILDQGYTVT.GNQLIN
  14 -RIVPALCLLLALPLAAQAASKQEYDLNNMLQKVAKESSVGTPRAINEDILDQGYTVE.GKALVN
  15 -VIAPTLSLLLALPLAAQAASKQEYELTQMLEKVAKESSVGTPRAINEDILDQGYTVEkGKALVN
  16 -SRFMALALCFVLPTAAHAASLKDFELSKMLEKVAKESSVGTPRAINEDILDQGYTVE.GNQLIN
  17 -FTIPTVALLLALPLGAQAASLQEFELGKMLEKVAAESNVGTPREINENILDQGYTVE.GKELIN
  18 -LRPTALTLCLLLPATALAASLKDYELTRMLEKVAKESSIGTPRAINEDILDQGYTVE.GNELIN
  19 RLIVPTAAILLASSFSAQAASLSEQNLNRELRNVAAQSSVGTPRAINEDILDQGYTVE.GTTLVN
  20 -YRLTTLLALSLALPVAHAASLQEQQLSQLLDQVARESNVGTPRAINEDILDQGYTVE.NNQLVN
  21 ------ALALGLMLATAQAASLKEMELTRTLEQVARQSSEGTPRAINEDILDQGYTVE.GHTLIN
  22 -FVAPSVALALVLPVCAQAASLLEAQMNRKLQSVAAESNKDLPREIDEKTLEVAYTVE.GMQLID


          70        80        90       100       110       120       13
          |         |         |         |         |         |         
   1 HLSVRASHAERMRSNPDSVRSQLGDSVCSNTGYRQLLARGAILTYSFTEYKTNQPVATERFDAGS
   2 HLSVREGQAQQMRANPDVMRNQLGNSVCHNNGFRQLMTKGAVLKYQFTEYKTNRPVATQTFQASD
   3 HLSVRQSHAERMQANPAQVRSQLGDSVCRNSGFRNLMSKGAVMVYRFTVYKTNQPIMDQAFDSAS
   4 HLSVREGQAQQMRANPDVMRNQLGNSVCHNNGFRQLMTKGAVLKYQFTEYKTNRPVATQTFQASD
   5 HLSVREGQAQQMRANPDVMRNQLGNSVCHNNGFRQLMTKGAVLKYQFTEYKTNRPVVTQTFQASD
   6 HLSVRASHAERMRSNPDSVRSQLGDSVCSNTGYRQLLARGAILTYSFTEYKTNQPVATERFDAGS
   7 HLSVRASHAERMRSNPDSVRSQLGDSVCSNTGYRQLLARGAILTYSFTEYKTNQPVATERFDAGS
   8 HLSVREGQAQQMRANPDVMRNQLGNSVCHNNGFRQLMTKGAVLKYQFTEYKTNRPVATQTFQASD
   9 HLSVRASHAERMRSNPDSVRSQLGDSVCSNTGYRQLLARGAILTYSFTEYKTNQPVATERFDAGS
  10 HLSVRQSHAARMQANPEQVRSQLGDSVCRNNGFRNLMSKGAVMVYRFTVYKTNQPVMDQAFDNAS
  11 HLSVRQSHAARMQANPEQVRSQLGDSVCRNNGFRNLMSKGAVMVYRFTVYKTNQPVMDQAFDNAS
  12 HLSVRAEHAARMQQNAEQVRSQLGDSVCRNSGYRNLMSKGAVMVYRFTVYKTNQPVMDQAFDAAS
  13 HLSVREGQASQMRANPDVMRNQLGNSVCHNNGFRQLMTKGAVLKYQFTEYKTNRPVAAQTFQASD
  14 HLSVRQDHAARMQANPEQVRSQLGDSVCRNSGFRNLMSKGAVMVYRFTVYKTNQPIMDQAFDNAS
  15 HLSVRESHAERMRENPQLVRSQLGDSVCRNNGYRQLMSKGAVLVYRFTVYKTNQPVMDQAFDAAS
  16 HLSVRASHAERMRSNPDSVRSQLGDSVFSNTGYRQLLARGAILTYSFTEYKTNQPVATERFDAGS
  17 HLSVQSGHAEQMRANPKAVYLQLGASVCRNPNYRKLMAKGAIMRYEFTENRTNRPVASARFQESD
  18 HLSVRTSHAQQMRAHPDAVRNQLLGSVCSNRGFRQLLAQGAVLRYQFSEYQSNRPVTTERYRAAD
  19 HLSVQKSHADKMRADPKAVYFQLGASVCNNPSYRKLMAKGAIMRYDFTEVKTNKAIGSASYQESD
  20 HLSVQPRHAAQMRDNPADVRSQLAVSVCGNEGLRKLMSQGAVLRYDFSEYQSNKPIASERYTAAD
  21 HLSVREAHAAQMRGNPDTVRSQLAASVCRNPGYRSLLAQGAQLRYQFSEYRSNRPVTVEVFDKSD
  22 HLSVLPDRAEQMRANPKAVYFQLGQSVCLNKGYRELMAKGAVMRYEITENKTNRPVASVKFVEAD


      0      
     |      
   1 CRIQGKK
   2 CTVKPKK
   3 CVAGNKK
   4 CTVKPK-
   5 CTVKPK-
   6 CRIQGKK
   7 CRIQGKK
   8 CTVKAK-
   9 CRIQGKK
  10 CLAGNKK
  11 CVAGNKK
  12 CTAGNKK
  13 CAAKPK-
  14 CVAGNKK
  15 CASGNKK
  16 CRI----
  17 CPAQ---
  18 C------
  19 CP-----
  20 C------
  21 C------
  22 CPA----