Please cite the following papers:
When SAM_T08 finishes loading, you should see links to
You may also view the list of files created so far. This link gives access to the full directory of file produced, including query progress logs, and this html file (summary.html). When the process is finished, you may want to download the entire directory to your computer, using a tool such as "wget".
Description | Link to file | Date |
Inputs |
Submitted sequence(s) | T0407.a2m | 2008 May 31 19:29:53 |
README file | README | 2008 May 31 19:30:40 |
Provided documentation | T0407.doc.html | 2008 May 31 19:29:53 |
Quick blastp of non-redundant PDB | T0407.pdb_blast.txt | 2008 May 31 19:30:41 |
Multiple alignment |
SAM_t06 multiple alignment in a2m format | T0407.t06.a2m.gz | 2008 May 31 20:06:46 |
SAM_t06 multiple alignment in pretty html format | T0407.t06.pa.html | 2008 May 31 20:12:04 |
SAM_t06 target hidden Markov model | T0407.t06.w0.5.mod | 2008 May 31 20:12:08 |
SAM_t06 multiple alignment---sequence logo (eps format) (pdf format) | T0407.t06.w0.5-logo | 2008 May 31 20:12:16 |
SAM_t06 consensus sequence | T0407.t06.w0.5.maxp | 2008 May 31 20:12:17 |
Script for highlighting in rasmol | conserved_t06 | 2008 May 31 20:12:17 |
SAM_t04 multiple alignment in a2m format | T0407.t04.a2m.gz | 2008 May 31 20:42:02 |
SAM_t04 multiple alignment in pretty html format | T0407.t04.pa.html | 2008 May 31 20:42:29 |
SAM_t04 target hidden Markov model | T0407.t04.w0.5.mod | 2008 May 31 20:42:33 |
SAM_t04 multiple alignment---sequence logo (eps format) (pdf format) | T0407.t04.w0.5-logo | 2008 May 31 20:42:40 |
SAM_t04 consensus sequence | T0407.t04.w0.5.maxp | 2008 May 31 20:42:40 |
Script for highlighting in rasmol | conserved_t04 | 2008 May 31 20:42:40 |
SAM_t2k multiple alignment in a2m format | T0407.t2k.a2m.gz | 2008 May 31 20:47:21 |
SAM_t2k multiple alignment in pretty html format | T0407.t2k.pa.html | 2008 May 31 20:49:15 |
SAM_t2k target hidden Markov model | T0407.t2k.w0.5.mod | 2008 May 31 20:49:16 |
SAM_t2k multiple alignment---sequence logo (eps format) (pdf format) | T0407.t2k.w0.5-logo | 2008 May 31 20:49:19 |
SAM_t2k consensus sequence | T0407.t2k.w0.5.maxp | 2008 May 31 20:49:19 |
Script for highlighting in rasmol | conserved_t2k | 2008 May 31 20:49:20 |
Secondary Structure Prediction (Explanation of secondary-structure predictions) |
str4 structure prediction (rdb format) (seq format) | T0407.t06.str4 | 2008 May 31 20:49:22 |
Script for T0407.t06.str4 coloring in rasmol | T0407.t06.str4-color.rasmol | 2008 May 31 20:49:22 |
str4---sequence logo (eps format) (pdf format) | T0407.t06.str4-logo | 2008 May 31 20:49:25 |
str4 structure prediction (rdb format) (seq format) | T0407.t04.str4 | 2008 May 31 20:49:26 |
Script for T0407.t04.str4 coloring in rasmol | T0407.t04.str4-color.rasmol | 2008 May 31 20:49:26 |
str4---sequence logo (eps format) (pdf format) | T0407.t04.str4-logo | 2008 May 31 20:49:29 |
str4 structure prediction (rdb format) (seq format) | T0407.t2k.str4 | 2008 May 31 20:49:29 |
Script for T0407.t2k.str4 coloring in rasmol | T0407.t2k.str4-color.rasmol | 2008 May 31 20:49:29 |
str4---sequence logo (eps format) (pdf format) | T0407.t2k.str4-logo | 2008 May 31 20:49:31 |
str2 structure prediction (rdb format) (seq format) | T0407.t06.str2 | 2008 May 31 20:12:15 |
Script for T0407.t06.str2 coloring in rasmol | T0407.t06.str2-color.rasmol | 2008 May 31 20:49:32 |
str2---sequence logo (eps format) (pdf format) | T0407.t06.str2-logo | 2008 May 31 20:49:34 |
str2 structure prediction (rdb format) (seq format) | T0407.t04.str2 | 2008 May 31 20:42:38 |
Script for T0407.t04.str2 coloring in rasmol | T0407.t04.str2-color.rasmol | 2008 May 31 20:49:34 |
str2---sequence logo (eps format) (pdf format) | T0407.t04.str2-logo | 2008 May 31 20:49:36 |
str2 structure prediction (rdb format) (seq format) | T0407.t2k.str2 | 2008 May 31 20:49:17 |
Script for T0407.t2k.str2 coloring in rasmol | T0407.t2k.str2-color.rasmol | 2008 May 31 20:49:36 |
str2---sequence logo (eps format) (pdf format) | T0407.t2k.str2-logo | 2008 May 31 20:49:38 |
alpha structure prediction (rdb format) (seq format) | T0407.t06.alpha | 2008 May 31 20:49:40 |
Script for T0407.t06.alpha coloring in rasmol | T0407.t06.alpha-color.rasmol | 2008 May 31 20:49:40 |
alpha---sequence logo (eps format) (pdf format) | T0407.t06.alpha-logo | 2008 May 31 20:49:42 |
alpha structure prediction (rdb format) (seq format) | T0407.t04.alpha | 2008 May 31 20:49:44 |
Script for T0407.t04.alpha coloring in rasmol | T0407.t04.alpha-color.rasmol | 2008 May 31 20:49:44 |
alpha---sequence logo (eps format) (pdf format) | T0407.t04.alpha-logo | 2008 May 31 20:49:46 |
alpha structure prediction (rdb format) (seq format) | T0407.t2k.alpha | 2008 May 31 20:49:47 |
Script for T0407.t2k.alpha coloring in rasmol | T0407.t2k.alpha-color.rasmol | 2008 May 31 20:49:47 |
alpha---sequence logo (eps format) (pdf format) | T0407.t2k.alpha-logo | 2008 May 31 20:49:49 |
bys structure prediction (rdb format) (seq format) | T0407.t06.bys | 2008 May 31 20:49:51 |
Script for T0407.t06.bys coloring in rasmol | T0407.t06.bys-color.rasmol | 2008 May 31 20:49:51 |
bys---sequence logo (eps format) (pdf format) | T0407.t06.bys-logo | 2008 May 31 20:49:53 |
bys structure prediction (rdb format) (seq format) | T0407.t04.bys | 2008 May 31 20:49:55 |
Script for T0407.t04.bys coloring in rasmol | T0407.t04.bys-color.rasmol | 2008 May 31 20:49:55 |
bys---sequence logo (eps format) (pdf format) | T0407.t04.bys-logo | 2008 May 31 20:49:56 |
bys structure prediction (rdb format) (seq format) | T0407.t2k.bys | 2008 May 31 20:49:57 |
Script for T0407.t2k.bys coloring in rasmol | T0407.t2k.bys-color.rasmol | 2008 May 31 20:49:57 |
bys---sequence logo (eps format) (pdf format) | T0407.t2k.bys-logo | 2008 May 31 20:49:59 |
pb structure prediction (rdb format) (seq format) | T0407.t06.pb | 2008 May 31 20:50:01 |
Script for T0407.t06.pb coloring in rasmol | T0407.t06.pb-color.rasmol | 2008 May 31 20:50:01 |
pb---sequence logo (eps format) (pdf format) | T0407.t06.pb-logo | 2008 May 31 20:50:03 |
pb structure prediction (rdb format) (seq format) | T0407.t04.pb | 2008 May 31 20:50:05 |
Script for T0407.t04.pb coloring in rasmol | T0407.t04.pb-color.rasmol | 2008 May 31 20:50:05 |
pb---sequence logo (eps format) (pdf format) | T0407.t04.pb-logo | 2008 May 31 20:50:07 |
pb structure prediction (rdb format) (seq format) | T0407.t2k.pb | 2008 May 31 20:50:08 |
Script for T0407.t2k.pb coloring in rasmol | T0407.t2k.pb-color.rasmol | 2008 May 31 20:50:08 |
pb---sequence logo (eps format) (pdf format) | T0407.t2k.pb-logo | 2008 May 31 20:50:10 |
n_notor2 structure prediction (rdb format) (seq format) | T0407.t06.n_notor2 | 2008 May 31 20:50:12 |
Script for T0407.t06.n_notor2 coloring in rasmol | T0407.t06.n_notor2-color.rasmol | 2008 May 31 20:50:12 |
n_notor2---sequence logo (eps format) (pdf format) | T0407.t06.n_notor2-logo | 2008 May 31 20:50:14 |
n_notor2 structure prediction (rdb format) (seq format) | T0407.t04.n_notor2 | 2008 May 31 20:50:16 |
Script for T0407.t04.n_notor2 coloring in rasmol | T0407.t04.n_notor2-color.rasmol | 2008 May 31 20:50:16 |
n_notor2---sequence logo (eps format) (pdf format) | T0407.t04.n_notor2-logo | 2008 May 31 20:50:18 |
n_notor2 structure prediction (rdb format) (seq format) | T0407.t2k.n_notor2 | 2008 May 31 20:50:18 |
Script for T0407.t2k.n_notor2 coloring in rasmol | T0407.t2k.n_notor2-color.rasmol | 2008 May 31 20:50:18 |
n_notor2---sequence logo (eps format) (pdf format) | T0407.t2k.n_notor2-logo | 2008 May 31 20:50:20 |
n_notor structure prediction (rdb format) (seq format) | T0407.t06.n_notor | 2008 May 31 20:50:23 |
Script for T0407.t06.n_notor coloring in rasmol | T0407.t06.n_notor-color.rasmol | 2008 May 31 20:50:23 |
n_notor---sequence logo (eps format) (pdf format) | T0407.t06.n_notor-logo | 2008 May 31 20:50:24 |
n_notor structure prediction (rdb format) (seq format) | T0407.t04.n_notor | 2008 May 31 20:50:26 |
Script for T0407.t04.n_notor coloring in rasmol | T0407.t04.n_notor-color.rasmol | 2008 May 31 20:50:26 |
n_notor---sequence logo (eps format) (pdf format) | T0407.t04.n_notor-logo | 2008 May 31 20:50:28 |
n_notor structure prediction (rdb format) (seq format) | T0407.t2k.n_notor | 2008 May 31 20:50:29 |
Script for T0407.t2k.n_notor coloring in rasmol | T0407.t2k.n_notor-color.rasmol | 2008 May 31 20:50:29 |
n_notor---sequence logo (eps format) (pdf format) | T0407.t2k.n_notor-logo | 2008 May 31 20:50:31 |
n_sep structure prediction (rdb format) (seq format) | T0407.t06.n_sep | 2008 May 31 20:50:33 |
Script for T0407.t06.n_sep coloring in rasmol | T0407.t06.n_sep-color.rasmol | 2008 May 31 20:50:33 |
n_sep---sequence logo (eps format) (pdf format) | T0407.t06.n_sep-logo | 2008 May 31 20:50:35 |
n_sep structure prediction (rdb format) (seq format) | T0407.t04.n_sep | 2008 May 31 20:50:37 |
Script for T0407.t04.n_sep coloring in rasmol | T0407.t04.n_sep-color.rasmol | 2008 May 31 20:50:37 |
n_sep---sequence logo (eps format) (pdf format) | T0407.t04.n_sep-logo | 2008 May 31 20:50:39 |
n_sep structure prediction (rdb format) (seq format) | T0407.t2k.n_sep | 2008 May 31 20:50:40 |
Script for T0407.t2k.n_sep coloring in rasmol | T0407.t2k.n_sep-color.rasmol | 2008 May 31 20:50:40 |
n_sep---sequence logo (eps format) (pdf format) | T0407.t2k.n_sep-logo | 2008 May 31 20:50:42 |
o_notor2 structure prediction (rdb format) (seq format) | T0407.t06.o_notor2 | 2008 May 31 20:50:44 |
Script for T0407.t06.o_notor2 coloring in rasmol | T0407.t06.o_notor2-color.rasmol | 2008 May 31 20:50:44 |
o_notor2---sequence logo (eps format) (pdf format) | T0407.t06.o_notor2-logo | 2008 May 31 20:50:46 |
o_notor2 structure prediction (rdb format) (seq format) | T0407.t04.o_notor2 | 2008 May 31 20:50:48 |
Script for T0407.t04.o_notor2 coloring in rasmol | T0407.t04.o_notor2-color.rasmol | 2008 May 31 20:50:48 |
o_notor2---sequence logo (eps format) (pdf format) | T0407.t04.o_notor2-logo | 2008 May 31 20:50:50 |
o_notor2 structure prediction (rdb format) (seq format) | T0407.t2k.o_notor2 | 2008 May 31 20:50:50 |
Script for T0407.t2k.o_notor2 coloring in rasmol | T0407.t2k.o_notor2-color.rasmol | 2008 May 31 20:50:50 |
o_notor2---sequence logo (eps format) (pdf format) | T0407.t2k.o_notor2-logo | 2008 May 31 20:50:52 |
o_notor structure prediction (rdb format) (seq format) | T0407.t06.o_notor | 2008 May 31 20:50:54 |
Script for T0407.t06.o_notor coloring in rasmol | T0407.t06.o_notor-color.rasmol | 2008 May 31 20:50:54 |
o_notor---sequence logo (eps format) (pdf format) | T0407.t06.o_notor-logo | 2008 May 31 20:50:56 |
o_notor structure prediction (rdb format) (seq format) | T0407.t04.o_notor | 2008 May 31 20:50:58 |
Script for T0407.t04.o_notor coloring in rasmol | T0407.t04.o_notor-color.rasmol | 2008 May 31 20:50:58 |
o_notor---sequence logo (eps format) (pdf format) | T0407.t04.o_notor-logo | 2008 May 31 20:51:00 |
o_notor structure prediction (rdb format) (seq format) | T0407.t2k.o_notor | 2008 May 31 20:51:01 |
Script for T0407.t2k.o_notor coloring in rasmol | T0407.t2k.o_notor-color.rasmol | 2008 May 31 20:51:01 |
o_notor---sequence logo (eps format) (pdf format) | T0407.t2k.o_notor-logo | 2008 May 31 20:51:03 |
o_sep structure prediction (rdb format) (seq format) | T0407.t06.o_sep | 2008 May 31 20:51:05 |
Script for T0407.t06.o_sep coloring in rasmol | T0407.t06.o_sep-color.rasmol | 2008 May 31 20:51:05 |
o_sep---sequence logo (eps format) (pdf format) | T0407.t06.o_sep-logo | 2008 May 31 20:51:07 |
o_sep structure prediction (rdb format) (seq format) | T0407.t04.o_sep | 2008 May 31 20:51:08 |
Script for T0407.t04.o_sep coloring in rasmol | T0407.t04.o_sep-color.rasmol | 2008 May 31 20:51:09 |
o_sep---sequence logo (eps format) (pdf format) | T0407.t04.o_sep-logo | 2008 May 31 20:51:10 |
o_sep structure prediction (rdb format) (seq format) | T0407.t2k.o_sep | 2008 May 31 20:51:11 |
Script for T0407.t2k.o_sep coloring in rasmol | T0407.t2k.o_sep-color.rasmol | 2008 May 31 20:51:11 |
o_sep---sequence logo (eps format) (pdf format) | T0407.t2k.o_sep-logo | 2008 May 31 20:51:13 |
dssp-ehl2 structure prediction (rdb format) (seq format) | T0407.t06.dssp-ehl2 | 2008 May 31 20:51:14 |
Script for T0407.t06.dssp-ehl2 coloring in rasmol | T0407.t06.dssp-ehl2-color.rasmol | 2008 May 31 20:51:14 |
dssp-ehl2---sequence logo (eps format) (pdf format) | T0407.t06.dssp-ehl2-logo | 2008 May 31 20:51:16 |
dssp-ehl2 structure prediction (rdb format) (seq format) | T0407.t04.dssp-ehl2 | 2008 May 31 20:51:16 |
Script for T0407.t04.dssp-ehl2 coloring in rasmol | T0407.t04.dssp-ehl2-color.rasmol | 2008 May 31 20:51:16 |
dssp-ehl2---sequence logo (eps format) (pdf format) | T0407.t04.dssp-ehl2-logo | 2008 May 31 20:51:18 |
dssp-ehl2 structure prediction (rdb format) (seq format) | T0407.t2k.dssp-ehl2 | 2008 May 31 20:51:18 |
Script for T0407.t2k.dssp-ehl2 coloring in rasmol | T0407.t2k.dssp-ehl2-color.rasmol | 2008 May 31 20:51:18 |
dssp-ehl2---sequence logo (eps format) (pdf format) | T0407.t2k.dssp-ehl2-logo | 2008 May 31 20:51:20 |
dssp-ehl2 structure prediction (rdb format) (seq format) | T0407.dssp-ehl2 | 2008 May 31 20:51:20 |
Script for T0407.dssp-ehl2 coloring in rasmol | T0407.dssp-ehl2-color.rasmol | 2008 May 31 20:51:20 |
dssp-ehl2---sequence logo (eps format) (pdf format) | T0407.dssp-ehl2-logo | 2008 May 31 20:51:22 |
CB_burial_14_7 structure prediction (rdb format) (seq format) | T0407.t06.CB_burial_14_7 | 2008 May 31 20:51:24 |
Script for T0407.t06.CB_burial_14_7 coloring in rasmol | T0407.t06.CB_burial_14_7-color.rasmol | 2008 May 31 20:51:24 |
CB_burial_14_7---sequence logo (eps format) (pdf format) | T0407.t06.CB_burial_14_7-logo | 2008 May 31 20:51:26 |
CB_burial_14_7 structure prediction (rdb format) (seq format) | T0407.t04.CB_burial_14_7 | 2008 May 31 20:51:28 |
Script for T0407.t04.CB_burial_14_7 coloring in rasmol | T0407.t04.CB_burial_14_7-color.rasmol | 2008 May 31 20:51:28 |
CB_burial_14_7---sequence logo (eps format) (pdf format) | T0407.t04.CB_burial_14_7-logo | 2008 May 31 20:51:30 |
CB_burial_14_7 structure prediction (rdb format) (seq format) | T0407.t2k.CB_burial_14_7 | 2008 May 31 20:51:31 |
Script for T0407.t2k.CB_burial_14_7 coloring in rasmol | T0407.t2k.CB_burial_14_7-color.rasmol | 2008 May 31 20:51:31 |
CB_burial_14_7---sequence logo (eps format) (pdf format) | T0407.t2k.CB_burial_14_7-logo | 2008 May 31 20:51:33 |
near-backbone-11 structure prediction (rdb format) (seq format) | T0407.t06.near-backbone-11 | 2008 May 31 20:51:35 |
Script for T0407.t06.near-backbone-11 coloring in rasmol | T0407.t06.near-backbone-11-color.rasmol | 2008 May 31 20:51:35 |
near-backbone-11---sequence logo (eps format) (pdf format) | T0407.t06.near-backbone-11-logo | 2008 May 31 20:51:37 |
near-backbone-11 structure prediction (rdb format) (seq format) | T0407.t04.near-backbone-11 | 2008 May 31 20:51:39 |
Script for T0407.t04.near-backbone-11 coloring in rasmol | T0407.t04.near-backbone-11-color.rasmol | 2008 May 31 20:51:39 |
near-backbone-11---sequence logo (eps format) (pdf format) | T0407.t04.near-backbone-11-logo | 2008 May 31 20:51:41 |
near-backbone-11 structure prediction (rdb format) (seq format) | T0407.t2k.near-backbone-11 | 2008 May 31 20:51:41 |
Script for T0407.t2k.near-backbone-11 coloring in rasmol | T0407.t2k.near-backbone-11-color.rasmol | 2008 May 31 20:51:41 |
near-backbone-11---sequence logo (eps format) (pdf format) | T0407.t2k.near-backbone-11-logo | 2008 May 31 20:51:43 |
CB8-sep9 structure prediction (rdb format) (seq format) | T0407.t06.CB8-sep9 | 2008 May 31 20:51:45 |
Script for T0407.t06.CB8-sep9 coloring in rasmol | T0407.t06.CB8-sep9-color.rasmol | 2008 May 31 20:51:45 |
CB8-sep9---sequence logo (eps format) (pdf format) | T0407.t06.CB8-sep9-logo | 2008 May 31 20:51:47 |
CB8-sep9 structure prediction (rdb format) (seq format) | T0407.t04.CB8-sep9 | 2008 May 31 20:51:49 |
Script for T0407.t04.CB8-sep9 coloring in rasmol | T0407.t04.CB8-sep9-color.rasmol | 2008 May 31 20:51:49 |
CB8-sep9---sequence logo (eps format) (pdf format) | T0407.t04.CB8-sep9-logo | 2008 May 31 20:51:51 |
CB8-sep9 structure prediction (rdb format) (seq format) | T0407.t2k.CB8-sep9 | 2008 May 31 20:51:52 |
Script for T0407.t2k.CB8-sep9 coloring in rasmol | T0407.t2k.CB8-sep9-color.rasmol | 2008 May 31 20:51:52 |
CB8-sep9---sequence logo (eps format) (pdf format) | T0407.t2k.CB8-sep9-logo | 2008 May 31 20:51:54 |
Target model scores |
amino acid single-track target model scores of PDB | T0407.t06-w0.5-scores.html | 2008 May 31 20:54:54 |
amino acid single-track target model scores of PDB | T0407.t04-w0.5-scores.html | 2008 May 31 20:58:10 |
amino acid single-track target model scores of PDB | T0407.t2k-w0.5-scores.html | 2008 May 31 21:00:53 |
amino acid/w0.5-1-str4-0.1 multi-track target model scores | T0407.t06-w0.5-1-str4-0.1-scores.html | 2008 May 31 21:02:24 |
amino acid/w0.5-1-str2-0.1 multi-track target model scores | T0407.t06-w0.5-1-str2-0.1-scores.html | 2008 May 31 21:03:57 |
amino acid/w0.5-1-alpha-0.1 multi-track target model scores | T0407.t06-w0.5-1-alpha-0.1-scores.html | 2008 May 31 21:05:30 |
amino acid/w0.5-1-bys-0.1 multi-track target model scores | T0407.t06-w0.5-1-bys-0.1-scores.html | 2008 May 31 21:06:59 |
amino acid/w0.5-1-pb-0.1 multi-track target model scores | T0407.t06-w0.5-1-pb-0.1-scores.html | 2008 May 31 21:08:32 |
amino acid/w0.5-1-n_notor2-0.1 multi-track target model scores | T0407.t06-w0.5-1-n_notor2-0.1-scores.html | 2008 May 31 21:10:04 |
amino acid/w0.5-1-n_notor-0.1 multi-track target model scores | T0407.t06-w0.5-1-n_notor-0.1-scores.html | 2008 May 31 21:11:36 |
amino acid/w0.5-1-n_sep-0.1 multi-track target model scores | T0407.t06-w0.5-1-n_sep-0.1-scores.html | 2008 May 31 21:13:08 |
amino acid/w0.5-1-o_notor2-0.1 multi-track target model scores | T0407.t06-w0.5-1-o_notor2-0.1-scores.html | 2008 May 31 21:14:39 |
amino acid/w0.5-1-o_notor-0.1 multi-track target model scores | T0407.t06-w0.5-1-o_notor-0.1-scores.html | 2008 May 31 21:16:10 |
amino acid/w0.5-1-o_sep-0.1 multi-track target model scores | T0407.t06-w0.5-1-o_sep-0.1-scores.html | 2008 May 31 21:17:44 |
amino acid/w0.5-1-dssp-ehl2-0.1 multi-track target model scores | T0407.t06-w0.5-1-dssp-ehl2-0.1-scores.html | 2008 May 31 21:19:16 |
amino acid/w0.5-1-CB_burial_14_7-0.3 multi-track target model scores | T0407.t06-w0.5-1-CB_burial_14_7-0.3-scores.html | 2008 May 31 21:20:50 |
amino acid/w0.5-1-near-backbone-11-0.3 multi-track target model scores | T0407.t06-w0.5-1-near-backbone-11-0.3-scores.html | 2008 May 31 21:22:23 |
amino acid/w0.5-1-CB8-sep9-0.3 multi-track target model scores | T0407.t06-w0.5-1-CB8-sep9-0.3-scores.html | 2008 May 31 21:24:01 |
amino acid/80-60-80-str2+near-backbone-11 multi-track target model scores | T0407.t06-80-60-80-str2+near-backbone-11-scores.html | 2008 May 31 21:25:45 |
amino acid/w0.5-1-str4-0.1 multi-track target model scores | T0407.t04-w0.5-1-str4-0.1-scores.html | 2008 May 31 21:27:28 |
amino acid/w0.5-1-str2-0.1 multi-track target model scores | T0407.t04-w0.5-1-str2-0.1-scores.html | 2008 May 31 21:29:08 |
amino acid/w0.5-1-alpha-0.1 multi-track target model scores | T0407.t04-w0.5-1-alpha-0.1-scores.html | 2008 May 31 21:30:52 |
amino acid/w0.5-1-bys-0.1 multi-track target model scores | T0407.t04-w0.5-1-bys-0.1-scores.html | 2008 May 31 21:32:36 |
amino acid/w0.5-1-pb-0.1 multi-track target model scores | T0407.t04-w0.5-1-pb-0.1-scores.html | 2008 May 31 21:34:20 |
amino acid/w0.5-1-n_notor2-0.1 multi-track target model scores | T0407.t04-w0.5-1-n_notor2-0.1-scores.html | 2008 May 31 21:36:04 |
amino acid/w0.5-1-n_notor-0.1 multi-track target model scores | T0407.t04-w0.5-1-n_notor-0.1-scores.html | 2008 May 31 21:37:47 |
amino acid/w0.5-1-n_sep-0.1 multi-track target model scores | T0407.t04-w0.5-1-n_sep-0.1-scores.html | 2008 May 31 21:39:33 |
amino acid/w0.5-1-o_notor2-0.1 multi-track target model scores | T0407.t04-w0.5-1-o_notor2-0.1-scores.html | 2008 May 31 21:41:15 |
amino acid/w0.5-1-o_notor-0.1 multi-track target model scores | T0407.t04-w0.5-1-o_notor-0.1-scores.html | 2008 May 31 21:42:57 |
amino acid/w0.5-1-o_sep-0.1 multi-track target model scores | T0407.t04-w0.5-1-o_sep-0.1-scores.html | 2008 May 31 21:44:40 |
amino acid/w0.5-1-dssp-ehl2-0.1 multi-track target model scores | T0407.t04-w0.5-1-dssp-ehl2-0.1-scores.html | 2008 May 31 21:46:25 |
amino acid/w0.5-1-CB_burial_14_7-0.3 multi-track target model scores | T0407.t04-w0.5-1-CB_burial_14_7-0.3-scores.html | 2008 May 31 21:48:08 |
amino acid/w0.5-1-near-backbone-11-0.3 multi-track target model scores | T0407.t04-w0.5-1-near-backbone-11-0.3-scores.html | 2008 May 31 21:49:52 |
amino acid/w0.5-1-CB8-sep9-0.3 multi-track target model scores | T0407.t04-w0.5-1-CB8-sep9-0.3-scores.html | 2008 May 31 21:51:39 |
amino acid/80-60-80-str2+near-backbone-11 multi-track target model scores | T0407.t04-80-60-80-str2+near-backbone-11-scores.html | 2008 May 31 21:53:38 |
amino acid/w0.5-1-str4-0.1 multi-track target model scores | T0407.t2k-w0.5-1-str4-0.1-scores.html | 2008 May 31 21:55:29 |
amino acid/w0.5-1-str2-0.1 multi-track target model scores | T0407.t2k-w0.5-1-str2-0.1-scores.html | 2008 May 31 21:57:27 |
amino acid/w0.5-1-alpha-0.1 multi-track target model scores | T0407.t2k-w0.5-1-alpha-0.1-scores.html | 2008 May 31 21:59:16 |
amino acid/w0.5-1-bys-0.1 multi-track target model scores | T0407.t2k-w0.5-1-bys-0.1-scores.html | 2008 May 31 22:01:06 |
amino acid/w0.5-1-pb-0.1 multi-track target model scores | T0407.t2k-w0.5-1-pb-0.1-scores.html | 2008 May 31 22:02:57 |
amino acid/w0.5-1-n_notor2-0.1 multi-track target model scores | T0407.t2k-w0.5-1-n_notor2-0.1-scores.html | 2008 May 31 22:04:45 |
amino acid/w0.5-1-n_notor-0.1 multi-track target model scores | T0407.t2k-w0.5-1-n_notor-0.1-scores.html | 2008 May 31 22:06:35 |
amino acid/w0.5-1-n_sep-0.1 multi-track target model scores | T0407.t2k-w0.5-1-n_sep-0.1-scores.html | 2008 May 31 22:08:26 |
amino acid/w0.5-1-o_notor2-0.1 multi-track target model scores | T0407.t2k-w0.5-1-o_notor2-0.1-scores.html | 2008 May 31 22:10:21 |
amino acid/w0.5-1-o_notor-0.1 multi-track target model scores | T0407.t2k-w0.5-1-o_notor-0.1-scores.html | 2008 May 31 22:12:20 |
amino acid/w0.5-1-o_sep-0.1 multi-track target model scores | T0407.t2k-w0.5-1-o_sep-0.1-scores.html | 2008 May 31 22:14:11 |
amino acid/w0.5-1-dssp-ehl2-0.1 multi-track target model scores | T0407.t2k-w0.5-1-dssp-ehl2-0.1-scores.html | 2008 May 31 22:16:01 |
amino acid/w0.5-1-CB_burial_14_7-0.3 multi-track target model scores | T0407.t2k-w0.5-1-CB_burial_14_7-0.3-scores.html | 2008 May 31 22:18:01 |
amino acid/w0.5-1-near-backbone-11-0.3 multi-track target model scores | T0407.t2k-w0.5-1-near-backbone-11-0.3-scores.html | 2008 May 31 22:19:53 |
amino acid/w0.5-1-CB8-sep9-0.3 multi-track target model scores | T0407.t2k-w0.5-1-CB8-sep9-0.3-scores.html | 2008 May 31 22:21:46 |
amino acid/80-60-80-str2+near-backbone-11 multi-track target model scores | T0407.t2k-80-60-80-str2+near-backbone-11-scores.html | 2008 May 31 22:23:53 |
Template model scores |
Annotated t06 template model scores | T0407.t06-template-lib-scores.html | 2008 May 31 22:33:39 |
Annotated t04 template model scores | T0407.t04-template-lib-scores.html | 2008 May 31 22:42:21 |
Annotated t2k template model scores | T0407.t2k-template-lib-scores.html | 2008 May 31 22:48:54 |
Top Hits |
Best scoring hits from t06 HMMs | T0407.t06.best-scores.html | 2008 May 31 22:48:58 |
Best scoring hits from t04 HMMs | T0407.t04.best-scores.html | 2008 May 31 22:49:00 |
Best scoring hits from t2k HMMs | T0407.t2k.best-scores.html | 2008 May 31 22:49:01 |
Best scoring hits from combining t06 t04 t2k | T0407.best-scores.html | 2008 May 31 22:49:03 |
Alignments for Top Hits |
Top alignments from t06 hits | T0407.t06.top_reported_alignments.html | 2008 May 31 22:54:30 |
Top alignments from t04 hits | T0407.t04.top_reported_alignments.html | 2008 May 31 22:54:31 |
Top alignments from t2k hits | T0407.t2k.top_reported_alignments.html | 2008 May 31 22:54:31 |
Top alignments from combined hits | T0407.top_reported_alignments.html | 2008 May 31 22:54:32 |
multiple alignment of templates (a2m.gz format) (pa format) | all-align | 2008 May 31 22:54:50 |
Undertaker (3d) files |
Undertaker input for top t06 alignments | T0407.t06.undertaker-align.under | 2008 May 31 22:55:01 |
Undertaker input for top t04 alignments | T0407.t04.undertaker-align.under | 2008 May 31 22:55:01 |
Undertaker input for top t2k alignments | T0407.t2k.undertaker-align.under | 2008 May 31 22:55:01 |
Undertaker input for top combined alignments | T0407.undertaker-align.under | 2008 May 31 22:55:01 |
PDB file with model(s) for top alignments | T0407.undertaker-align.pdb.gz | 2008 May 31 22:57:01 |
Images of an (incomplete) model created by sidechain replacement on the backbone of the highest scoring template.
Coloring is defined by ehl2, to show predicted secondary structure (red for helix, yellow for strand, blue for turn, grey for other).
Front | Top | Side |
500x500 | 500x500 | 500x500 |
Fragment list for undertaker (from fragfinder) | T0407.t06.many.frag.gz | 2008 May 31 22:59:26 |
Fragment list for undertaker (from fragfinder) | T0407.t04.many.frag.gz | 2008 May 31 23:00:05 |
Fragment list for undertaker (from fragfinder) | T0407.t2k.many.frag.gz | 2008 May 31 23:00:45 |
Contact predictions, based on |
contact predictions (rr format) (rr.nn1000.constraints format) (rr.rasmol format) | T0407.647_47 | 2008 May 31 23:13:02 |
contact predictions (rr format) (rr.nn1000.constraints format) (rr.rasmol format) | T0407.730_47 | 2008 May 31 23:13:05 |
contact predictions (rr format) (rr.nn1000.constraints format) (rr.rasmol format) | T0407.648_17.730_47 | 2008 May 31 23:15:17 |
Distance constraints extracted from alignments} |
Constraints from alignment | align.constraints | 2008 May 31 23:18:00 |
Rejected constraints | rejected_bonus.constraints | 2008 May 31 23:18:00 |
Noncontact constraints | noncontact.constraints | 2008 May 31 23:18:00 |
First attempted model using undertaker | decoys/T0407.try1-opt3.pdb.gz | 2008 Jun 1 1:56:46 |
Images of complete model in decoys/T0407.try1-opt3.pdb.gz
Coloring is defined by decoys/T0407.try1-opt3.t06.str2-color.rasmol, to show predicted secondary structure (red for helix, yellow for strand, blue for turn, grey for other).
Front | Top | Side |
500x500 | 500x500 | 500x500 |
Please cite the following papers:
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