Best Alignments for T0407

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2yxoA	3.2780e-18	2yxoA/T0407-2yxoA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1m65A	7.7853e-18	1m65A/T0407-1m65A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.6.3.1
2anuA	1.3299e-17	2anuA/T0407-2anuA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.6.3.1
2hnhA	8.0919e-13	2hnhA/T0407-2hnhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1v77A	2.7293e-03	1v77A/T0407-1v77A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.6.3.2
2qahA	3.7338e-01	2qahA/T0407-2qahA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ffiA	1.0012e+00	2ffiA/T0407-2ffiA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.15
2gzxA	1.4830e+00	2gzxA/T0407-2gzxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1xwyA	2.6300e+00	1xwyA/T0407-1xwyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.12
1j6oA	2.7541e+00	1j6oA/T0407-1j6oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.12
2f6kA	2.8361e+00	2f6kA/T0407-2f6kA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.15
1zzmA	3.5138e+00	1zzmA/T0407-1zzmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.12
1yixA	3.8555e+00	1yixA/T0407-1yixA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.12
3c86A	4.2512e+00	3c86A/T0407-3c86A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1k77A	4.3253e+00	1k77A/T0407-1k77A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.15.5
2ob3A	4.4498e+00	2ob3A/T0407-2ob3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2qw5A	4.5122e+00	2qw5A/T0407-2qw5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vflA	4.5549e+00	1vflA/T0407-1vflA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.1
2qulA	4.7207e+00	2qulA/T0407-2qulA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1i60A	4.9869e+00	1i60A/T0407-1i60A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.15.4

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001