tRNA Activity Predictions By Species

These data were created using the tRAP pipeline detailed in the manuscript Predicting transfer RNA gene activity from sequence and genome context.


Species Name Common Name Genome Assembly Sorted By tRNA Name Sorted By Isotype & Activity
Aotus nancymaae Ma's night monkey Anan_2.0 (GCA_000952055.2) link link
Bos taurus cattle Bos_taurus_UMD_3.1.1 (GCF_000003055.6) link link
Canis lupus familiaris dog CanFam3.1 (GCF_000002285.3) link link
Capra hircus goat ASM170441v1 (GCF_001704415.1) link link
Cavia porcellus domestic guinea pig Cavpor3.0 (GCF_000151735.1) link link
Chinchilla lanigera Chinchilla ChiLan1.0 (GCA_000276665.1) link link
Chrysochloris asiatica Cape golden mole ChrAsi1.0 (GCA_000296735.1) link link
Dasypus novemcinctus nine-banded armadillo Dasnov3.0 (GCF_000208655.1) link link
Eptesicus fuscus big brown bat EptFus1.0 (GCF_000308155.1) link link
Equus caballus horse EquCab2.0 (GCF_000002305.2) link link
Erinaceus europaeus western European hedgehog EriEur2.0 (GCF_000296755.1) link link
Gorilla gorilla western gorilla GSMRT3 (GCA_900006655.1) link link
Heterocephalus glaber Naked mole rat HetGla_female_1.0 (GCA_000247695.1) link link
Homo sapiens human GRCh38.p11 (GCA_000001405.26) link link
Jaculus jaculus lesser Egyptian jerboa JacJac1.0 (GCF_000280705.1) link link
Macaca mulatta Rhesus monkey Mmul_8.0.1 (GCF_000772875.2) link link
Marmota marmota European marmot marMar2.1 (GCF_001458135.1) link link
Microcebus murinus gray mouse lemur Mmur_3.0 (GCA_000165445.3) link link
Microtus ochrogaster Prairie vole MicOch1.0 (GCA_000317375.1) link link
Mus musculus house mouse GRCm38.p5 (GCF_000001635.25) link link
Mustela putorius furo Ferret MusPutFur1.0 (GCA_000215625.1) link link
Octodon degus degu OctDeg1.0 (GCF_000260255.1) link link
Orcinus orca killer whale Oorc_1.1 (GCF_000331955.2) link link
Oryctolagus cuniculus rabbit OryCun2.0 (GCF_000003625.3) link link
Pan troglodytes chimpanzee Pan_tro 3.0 (GCF_000001515.7) link link
Pongo abelii orangutan Susie_PABv2 (GCA_002880775.3) link link
Pteropus alecto black flying fox ASM32557v1 (GCF_000325575.1) link link
Rattus norvegicus Norway rat Rnor_6.0 (GCF_000001895.5) link link
Sus scrofa pig Sscrofa11.1 (GCA_000003025.6) link link

Inquiries should be directed to Bryan Thornlow
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