T0195 Hypothetical esterase in SMC3-MRPL8 intergenic region, S. cerevisiae
| Description | Link to file | Date |
| Inputs |
| Submitted sequence(s) | T0195.a2m | 2004 Mar 4 13:19:54 |
| README file | README | 2004 Jun 7 2:57:49 |
| Provided documentation | T0195.doc.html | 2004 May 24 17:08:40 |
| Multiple alignment |
| SAM_t04 multiple alignment in a2m format | T0195.t04.a2m.gz | 2004 Jun 7 3:09:59 |
| SAM_t04 multiple alignment in pretty html format | T0195.t04.pa.html | 2004 Jun 7 3:10:46 |
| SAM_t04 target hidden Markov model | T0195.t04.w0.5.mod | 2004 Jun 7 3:10:54 |
| SAM_t04 multiple alignment---sequence logo (eps format) (pdf format) | T0195.t04.w0.5-logo | 2004 Jun 14 16:44:40 |
| Script for highlighting in rasmol | conserved_t04 | 2004 Jun 14 17:24:26 |
| SAM_t2k multiple alignment in a2m format | T0195.t2k.a2m.gz | 2004 Jun 7 3:18:50 |
| SAM_t2k multiple alignment in pretty html format | T0195.t2k.pa.html | 2004 Jun 7 3:19:01 |
| SAM_t2k target hidden Markov model | T0195.t2k.w0.5.mod | 2004 Jun 7 3:19:02 |
| SAM_t2k multiple alignment---sequence logo (eps format) (pdf format) | T0195.t2k.w0.5-logo | 2004 Jun 7 3:36:44 |
| Script for highlighting in rasmol | conserved_t2k | 2004 Jun 14 17:24:28 |
| Secondary Structure Prediction (Explanation of secondary-structure predictions) |
| str2 structure prediction (rdb format) (seq format) | T0195.t2k.str2 | 2004 Jun 7 3:36:45 |
| Script for T0195.t2k.str2 coloring in rasmol | T0195.t2k.str2-color.rasmol | 2004 Jun 14 17:24:29 |
| str2---sequence logo (eps format) (pdf format) | T0195.t2k.str2-logo | 2004 Jun 7 3:37:08 |
| stride-ebghtl structure prediction (rdb format) (seq format) | T0195.t2k.stride-ebghtl | 2004 Jun 7 3:36:24 |
| Script for T0195.t2k.stride-ebghtl coloring in rasmol | T0195.t2k.stride-ebghtl-color.rasmol | 2004 Jun 14 17:24:29 |
| stride-ebghtl---sequence logo (eps format) (pdf format) | T0195.t2k.stride-ebghtl-logo | 2004 Jun 7 3:37:29 |
| dssp-ebghstl structure prediction (rdb format) (seq format) | T0195.t2k.dssp-ebghstl | 2004 Jun 7 3:37:29 |
| Script for T0195.t2k.dssp-ebghstl coloring in rasmol | T0195.t2k.dssp-ebghstl-color.rasmol | 2004 Jun 14 17:24:30 |
| dssp-ebghstl---sequence logo (eps format) (pdf format) | T0195.t2k.dssp-ebghstl-logo | 2004 Jun 7 3:37:51 |
| alpha structure prediction (rdb format) (seq format) | T0195.t2k.alpha | 2004 Jun 7 3:37:52 |
| Script for T0195.t2k.alpha coloring in rasmol | T0195.t2k.alpha-color.rasmol | 2004 Jun 14 17:24:31 |
| alpha---sequence logo (eps format) (pdf format) | T0195.t2k.alpha-logo | 2004 Jun 7 3:38:13 |
| bys structure prediction (rdb format) (seq format) | T0195.t2k.bys | 2004 Jun 14 16:53:03 |
| Script for T0195.t2k.bys coloring in rasmol | T0195.t2k.bys-color.rasmol | 2004 Jun 15 7:51:52 |
| dssp-ehl2 structure prediction (rdb format) (seq format) | T0195.t2k.dssp-ehl2 | 2004 Jun 7 3:38:14 |
| Script for T0195.t2k.dssp-ehl2 coloring in rasmol | T0195.t2k.dssp-ehl2-color.rasmol | 2004 Jun 14 17:24:32 |
| dssp-ehl2---sequence logo (eps format) (pdf format) | T0195.t2k.dssp-ehl2-logo | 2004 Jun 7 3:38:33 |
| CB_burial_14_7 structure prediction (rdb format) (seq format) | T0195.t2k.CB_burial_14_7 | 2004 Jun 7 3:38:34 |
| Script for T0195.t2k.CB_burial_14_7 coloring in rasmol | T0195.t2k.CB_burial_14_7-color.rasmol | 2004 Jun 14 17:24:33 |
| CB_burial_14_7---sequence logo (eps format) (pdf format) | T0195.t2k.CB_burial_14_7-logo | 2004 Jun 7 3:38:55 |
| near-backbone-11 structure prediction (rdb format) (seq format) | T0195.t2k.near-backbone-11 | 2004 Jul 1 3:52:42 |
| Script for T0195.t2k.near-backbone-11 coloring in rasmol | T0195.t2k.near-backbone-11-color.rasmol | 2004 Jul 1 3:52:43 |
| str2 structure prediction (rdb format) (seq format) | T0195.t04.str2 | 2004 Jun 14 16:44:49 |
| Script for T0195.t04.str2 coloring in rasmol | T0195.t04.str2-color.rasmol | 2004 Jun 14 17:24:34 |
| str2---sequence logo (eps format) (pdf format) | T0195.t04.str2-logo | 2004 Jun 14 16:45:16 |
| stride-ebghtl structure prediction (rdb format) (seq format) | T0195.t04.stride-ebghtl | 2004 Jun 14 16:44:12 |
| Script for T0195.t04.stride-ebghtl coloring in rasmol | T0195.t04.stride-ebghtl-color.rasmol | 2004 Jun 14 17:24:34 |
| stride-ebghtl---sequence logo (eps format) (pdf format) | T0195.t04.stride-ebghtl-logo | 2004 Jun 14 16:45:46 |
| dssp-ebghstl structure prediction (rdb format) (seq format) | T0195.t04.dssp-ebghstl | 2004 Jun 14 16:45:50 |
| Script for T0195.t04.dssp-ebghstl coloring in rasmol | T0195.t04.dssp-ebghstl-color.rasmol | 2004 Jun 14 17:24:35 |
| dssp-ebghstl---sequence logo (eps format) (pdf format) | T0195.t04.dssp-ebghstl-logo | 2004 Jun 14 16:46:16 |
| alpha structure prediction (rdb format) (seq format) | T0195.t04.alpha | 2004 Jun 14 16:46:19 |
| Script for T0195.t04.alpha coloring in rasmol | T0195.t04.alpha-color.rasmol | 2004 Jun 14 17:24:36 |
| alpha---sequence logo (eps format) (pdf format) | T0195.t04.alpha-logo | 2004 Jun 14 16:46:47 |
| bys structure prediction (rdb format) (seq format) | T0195.t04.bys | 2004 Jun 14 16:53:11 |
| Script for T0195.t04.bys coloring in rasmol | T0195.t04.bys-color.rasmol | 2004 Jun 15 7:52:08 |
| dssp-ehl2 structure prediction (rdb format) (seq format) | T0195.t04.dssp-ehl2 | 2004 Jun 14 16:46:48 |
| Script for T0195.t04.dssp-ehl2 coloring in rasmol | T0195.t04.dssp-ehl2-color.rasmol | 2004 Jun 14 17:24:37 |
| dssp-ehl2---sequence logo (eps format) (pdf format) | T0195.t04.dssp-ehl2-logo | 2004 Jun 14 16:47:14 |
| CB_burial_14_7 structure prediction (rdb format) (seq format) | T0195.t04.CB_burial_14_7 | 2004 Jun 14 16:47:18 |
| Script for T0195.t04.CB_burial_14_7 coloring in rasmol | T0195.t04.CB_burial_14_7-color.rasmol | 2004 Jun 14 17:24:38 |
| CB_burial_14_7---sequence logo (eps format) (pdf format) | T0195.t04.CB_burial_14_7-logo | 2004 Jun 14 16:53:38 |
| near-backbone-11 structure prediction (rdb format) (seq format) | T0195.t04.near-backbone-11 | 2004 Jul 1 3:52:55 |
| Script for T0195.t04.near-backbone-11 coloring in rasmol | T0195.t04.near-backbone-11-color.rasmol | 2004 Jul 1 3:52:55 |
| Target model scores |
| amino acid single-track target model scores of PDB | T0195.t2k-w0.5-scores.html | 2004 Jun 7 3:21:59 |
| amino acid single-track target model scores of PDB | T0195.t04-w0.5-scores.html | 2004 Jul 1 3:52:58 |
| amino acid/100-30-str2 two-track target model scores | T0195.t2k-100-30-str2-scores.html | 2004 Jun 7 3:41:50 |
| amino acid/100-30-stride-ebghtl two-track target model scores | T0195.t2k-100-30-stride-ebghtl-scores.html | 2004 Jun 7 3:46:03 |
| amino acid/100-30-dssp-ebghstl two-track target model scores | T0195.t2k-100-30-dssp-ebghstl-scores.html | 2004 Jun 7 3:49:22 |
| amino acid/100-30-alpha two-track target model scores | T0195.t2k-100-30-alpha-scores.html | 2004 Jun 7 3:52:15 |
| amino acid/100-30-dssp-ehl2 two-track target model scores | T0195.t2k-100-30-dssp-ehl2-scores.html | 2004 Jun 7 3:55:23 |
| amino acid/100-30-CB_burial_14_7 two-track target model scores | T0195.t2k-100-30-CB_burial_14_7-scores.html | 2004 Jun 7 3:58:14 |
| amino acid/100-40-40-str2+CB_burial_14_7 two-track target model scores | T0195.t2k-100-40-40-str2+CB_burial_14_7-scores.html | 2004 Jun 7 4:01:21 |
| amino acid/100-30-str2 two-track target model scores | T0195.t04-100-30-str2-scores.html | 2004 Jun 15 21:13:16 |
| amino acid/100-30-stride-ebghtl two-track target model scores | T0195.t04-100-30-stride-ebghtl-scores.html | 2004 Jun 15 21:16:56 |
| amino acid/100-30-dssp-ebghstl two-track target model scores | T0195.t04-100-30-dssp-ebghstl-scores.html | 2004 Jun 15 21:20:39 |
| amino acid/100-30-alpha two-track target model scores | T0195.t04-100-30-alpha-scores.html | 2004 Jun 15 21:24:22 |
| amino acid/100-30-dssp-ehl2 two-track target model scores | T0195.t04-100-30-dssp-ehl2-scores.html | 2004 Jun 15 21:28:06 |
| amino acid/100-30-CB_burial_14_7 two-track target model scores | T0195.t04-100-30-CB_burial_14_7-scores.html | 2004 Jun 15 21:31:49 |
| amino acid/100-40-40-str2+CB_burial_14_7 two-track target model scores | T0195.t04-100-40-40-str2+CB_burial_14_7-scores.html | 2004 Jun 15 21:35:47 |
| Template model scores |
| Annotated template model scores | T0195.template-lib-scores.html | 2004 Jun 7 3:28:19 |
| Top Hits |
| Best scoring hits from all models | T0195.t2k.best-scores.html | 2004 Jun 7 4:01:22 |
| Alignments for Top Hits |
| T02 Many Alignments Summary | T0195.t2k.many_alignments.html | 2004 Jul 1 4:40:42 |
| T02 Top Models Summary | T0195.t2k.top_reported_alignments.html | 2004 Jul 1 4:41:31 |
| multiple alignment of templates (a2m.gz format) (pa format) | all-align | 2004 Jul 1 4:41:47 |
| Undertaker (3d) files |
| Multiple alignment for undertaker templates | T0195.t2k-2track-undertaker.a2m | 2004 Jun 14 16:58:49 |
| Undertaker input for top alignments | T0195.t2k.undertaker-align.under | 2004 Jul 1 4:41:46 |
| PDB file with model(s) for top alignments | T0195.t2k.undertaker-align.pdb.gz | 2004 Jul 1 4:43:53 |
| Fragment list for undertaker (from fragfinder) | T0195.t2k.many.frag.gz | 2004 Jun 7 6:57:50 |