Best Alignments for T0195

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1jjfA/T0195-1jjfA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1jjfA/T0195-1jjfA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 1.8135e-242.5434e-35 c.69.1.2
1f0nA/T0195-1f0nA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1f0nA/T0195-1f0nA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 4.8013e-233.4280e-34 1dqyA c.69.1.3
1orvA/T0195-1orvA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1orvA/T0195-1orvA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 6.3833e-201.4347e-32 b.70.3.1
c.69.1.24
1r88A/T0195-1r88A-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1r88A/T0195-1r88A-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 7.7886e-195.0043e-29
1n1mA/T0195-1n1mA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1n1mA/T0195-1n1mA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 1.1168e-181.6543e-31 b.70.3.1
c.69.1.24
1lzlA/T0195-1lzlA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1lzlA/T0195-1lzlA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 5.1986e-121.5903e-25 c.69.1.2
1l7aA/T0195-1l7aA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1l7aA/T0195-1l7aA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 3.4596e-111.1078e-22 c.69.1.25
1gklA/T0195-1gklA-t04-local-str2-1.5-adpstyle5.a2m 1gklA/T0195-1gklA-t04-local-str2-1.5-adpstyle5.al 4.1370e-111.4277e-24 c.69.1.2
1auoA/T0195-1auoA-t04-global-str2-1.5-adpstyle5.a2m 1auoA/T0195-1auoA-t04-global-str2-1.5-adpstyle5.al 6.0850e-111.5604e-24 1auoA c.69.1.14
1gkkA/T0195-1gkkA-t04-local-str2-1.5-adpstyle5.a2m 1gkkA/T0195-1gkkA-t04-local-str2-1.5-adpstyle5.al 6.4708e-112.5833e-24 c.69.1.2
1jfrA/T0195-1jfrA-t04-local-str2-1.5-adpstyle5.a2m 1jfrA/T0195-1jfrA-t04-local-str2-1.5-adpstyle5.al 1.7434e-107.7157e-23 1jfrA c.69.1.16
1c4xA/T0195-1c4xA-t04-global-str2-1.5-adpstyle5.a2m 1c4xA/T0195-1c4xA-t04-global-str2-1.5-adpstyle5.al 5.3975e-106.3040e-27 1c4xA c.69.1.10
1jkmB/T0195-1jkmB-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1jkmB/T0195-1jkmB-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 8.1387e-101.0283e-21 1jkmA c.69.1.2
1jjiA/T0195-1jjiA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1jjiA/T0195-1jjiA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 9.9845e-101.9319e-23 c.69.1.2
1ufoA/T0195-1ufoA-t04-global-str2-1.5-adpstyle5.a2m 1ufoA/T0195-1ufoA-t04-global-str2-1.5-adpstyle5.al 2.0594e-091.2580e-23
1h2wA/T0195-1h2wA-t04-local-str2-1.5-adpstyle5.a2m 1h2wA/T0195-1h2wA-t04-local-str2-1.5-adpstyle5.al 3.3320e-092.0429e-26 b.69.7.1
c.69.1.4
1h2xA/T0195-1h2xA-t04-local-str2-1.5-adpstyle5.a2m 1h2xA/T0195-1h2xA-t04-local-str2-1.5-adpstyle5.al 5.9715e-095.7877e-26 b.69.7.1
c.69.1.4
1e8nA/T0195-1e8nA-t04-local-str2-1.5-adpstyle5.a2m 1e8nA/T0195-1e8nA-t04-local-str2-1.5-adpstyle5.al 1.3113e-081.2002e-25 1qfmA b.69.7.1
c.69.1.4
1ggvA/T0195-1ggvA-t04-global-str2-1.5-adpstyle5.a2m 1ggvA/T0195-1ggvA-t04-global-str2-1.5-adpstyle5.al 5.3654e-085.6428e-22 1din c.69.1.9

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001