T0200 1119B, Deinococcus radiodurans
| Description | Link to file | Date |
| Inputs |
| Submitted sequence(s) | T0200.a2m | 2004 Jun 8 17:30:10 |
| README file | README | 2004 Jul 22 12:23:03 |
| Provided documentation | T0200.doc.html | 2004 May 24 17:35:49 |
| Multiple alignment |
| SAM_t04 multiple alignment in a2m format | T0200.t04.a2m.gz | 2004 Jun 9 10:28:16 |
| SAM_t04 multiple alignment in pretty html format | T0200.t04.pa.html | 2004 Jun 9 12:50:39 |
| SAM_t04 target hidden Markov model | T0200.t04.w0.5.mod | 2004 Jun 9 10:28:23 |
| SAM_t04 multiple alignment---sequence logo (eps format) (pdf format) | T0200.t04.w0.5-logo | 2004 Jun 14 17:50:21 |
| Script for highlighting in rasmol | conserved_t04 | 2004 Jun 14 17:50:21 |
| SAM_t2k multiple alignment in a2m format | T0200.t2k.a2m.gz | 2004 Jun 9 12:03:17 |
| SAM_t2k multiple alignment in pretty html format | T0200.t2k.pa.html | 2004 Jul 16 12:41:59 |
| SAM_t2k target hidden Markov model | T0200.t2k.w0.5.mod | 2004 Jun 9 12:03:24 |
| SAM_t2k multiple alignment---sequence logo (eps format) (pdf format) | T0200.t2k.w0.5-logo | 2004 Jun 9 12:04:02 |
| Script for highlighting in rasmol | conserved_t2k | 2004 Jun 9 12:04:03 |
| Secondary Structure Prediction (Explanation of secondary-structure predictions) |
| str2 structure prediction (rdb format) (seq format) | T0200.t2k.str2 | 2004 Jun 9 12:04:05 |
| Script for T0200.t2k.str2 coloring in rasmol | T0200.t2k.str2-color.rasmol | 2004 Jun 9 12:04:06 |
| str2---sequence logo (eps format) (pdf format) | T0200.t2k.str2-logo | 2004 Jun 9 12:04:42 |
| stride-ebghtl structure prediction (rdb format) (seq format) | T0200.t2k.stride-ebghtl | 2004 Jun 9 12:03:25 |
| Script for T0200.t2k.stride-ebghtl coloring in rasmol | T0200.t2k.stride-ebghtl-color.rasmol | 2004 Jun 9 12:04:44 |
| stride-ebghtl---sequence logo (eps format) (pdf format) | T0200.t2k.stride-ebghtl-logo | 2004 Jun 9 12:05:17 |
| dssp-ebghstl structure prediction (rdb format) (seq format) | T0200.t2k.dssp-ebghstl | 2004 Jun 9 12:05:18 |
| Script for T0200.t2k.dssp-ebghstl coloring in rasmol | T0200.t2k.dssp-ebghstl-color.rasmol | 2004 Jun 9 12:05:19 |
| dssp-ebghstl---sequence logo (eps format) (pdf format) | T0200.t2k.dssp-ebghstl-logo | 2004 Jun 9 12:05:54 |
| alpha structure prediction (rdb format) (seq format) | T0200.t2k.alpha | 2004 Jun 9 12:05:56 |
| Script for T0200.t2k.alpha coloring in rasmol | T0200.t2k.alpha-color.rasmol | 2004 Jun 9 12:05:57 |
| alpha---sequence logo (eps format) (pdf format) | T0200.t2k.alpha-logo | 2004 Jun 9 12:06:34 |
| bys structure prediction (rdb format) (seq format) | T0200.t2k.bys | 2004 Jun 14 17:50:28 |
| Script for T0200.t2k.bys coloring in rasmol | T0200.t2k.bys-color.rasmol | 2004 Jun 15 7:51:52 |
| bys---sequence logo (eps format) (pdf format) | T0200.t2k.bys-logo | 2004 Jul 16 12:42:27 |
| dssp-ehl2 structure prediction (rdb format) (seq format) | T0200.t2k.dssp-ehl2 | 2004 Jun 9 12:06:36 |
| Script for T0200.t2k.dssp-ehl2 coloring in rasmol | T0200.t2k.dssp-ehl2-color.rasmol | 2004 Jun 9 12:06:37 |
| dssp-ehl2---sequence logo (eps format) (pdf format) | T0200.t2k.dssp-ehl2-logo | 2004 Jun 9 12:07:10 |
| CB_burial_14_7 structure prediction (rdb format) (seq format) | T0200.t2k.CB_burial_14_7 | 2004 Jun 9 12:07:12 |
| Script for T0200.t2k.CB_burial_14_7 coloring in rasmol | T0200.t2k.CB_burial_14_7-color.rasmol | 2004 Jun 9 12:07:13 |
| CB_burial_14_7---sequence logo (eps format) (pdf format) | T0200.t2k.CB_burial_14_7-logo | 2004 Jun 9 12:07:48 |
| near-backbone-11 structure prediction (rdb format) (seq format) | T0200.t2k.near-backbone-11 | 2004 Jul 5 19:31:09 |
| Script for T0200.t2k.near-backbone-11 coloring in rasmol | T0200.t2k.near-backbone-11-color.rasmol | 2004 Jul 5 19:31:10 |
| str2 structure prediction (rdb format) (seq format) | T0200.t04.str2 | 2004 Jun 14 17:50:35 |
| Script for T0200.t04.str2 coloring in rasmol | T0200.t04.str2-color.rasmol | 2004 Jun 14 17:50:36 |
| str2---sequence logo (eps format) (pdf format) | T0200.t04.str2-logo | 2004 Jun 14 17:51:14 |
| stride-ebghtl structure prediction (rdb format) (seq format) | T0200.t04.stride-ebghtl | 2004 Jun 14 17:49:51 |
| Script for T0200.t04.stride-ebghtl coloring in rasmol | T0200.t04.stride-ebghtl-color.rasmol | 2004 Jun 14 17:51:15 |
| stride-ebghtl---sequence logo (eps format) (pdf format) | T0200.t04.stride-ebghtl-logo | 2004 Jun 14 17:51:46 |
| dssp-ebghstl structure prediction (rdb format) (seq format) | T0200.t04.dssp-ebghstl | 2004 Jun 14 17:51:47 |
| Script for T0200.t04.dssp-ebghstl coloring in rasmol | T0200.t04.dssp-ebghstl-color.rasmol | 2004 Jun 14 17:51:48 |
| dssp-ebghstl---sequence logo (eps format) (pdf format) | T0200.t04.dssp-ebghstl-logo | 2004 Jun 14 17:52:14 |
| alpha structure prediction (rdb format) (seq format) | T0200.t04.alpha | 2004 Jun 14 17:52:16 |
| Script for T0200.t04.alpha coloring in rasmol | T0200.t04.alpha-color.rasmol | 2004 Jun 14 17:52:16 |
| alpha---sequence logo (eps format) (pdf format) | T0200.t04.alpha-logo | 2004 Jun 14 17:52:43 |
| bys structure prediction (rdb format) (seq format) | T0200.t04.bys | 2004 Jun 14 17:52:45 |
| Script for T0200.t04.bys coloring in rasmol | T0200.t04.bys-color.rasmol | 2004 Jun 15 7:52:08 |
| bys---sequence logo (eps format) (pdf format) | T0200.t04.bys-logo | 2004 Jul 16 12:42:58 |
| dssp-ehl2 structure prediction (rdb format) (seq format) | T0200.t04.dssp-ehl2 | 2004 Jun 14 17:52:46 |
| Script for T0200.t04.dssp-ehl2 coloring in rasmol | T0200.t04.dssp-ehl2-color.rasmol | 2004 Jun 14 17:52:46 |
| dssp-ehl2---sequence logo (eps format) (pdf format) | T0200.t04.dssp-ehl2-logo | 2004 Jun 14 17:53:12 |
| CB_burial_14_7 structure prediction (rdb format) (seq format) | T0200.t04.CB_burial_14_7 | 2004 Jun 14 17:53:14 |
| Script for T0200.t04.CB_burial_14_7 coloring in rasmol | T0200.t04.CB_burial_14_7-color.rasmol | 2004 Jun 14 17:53:14 |
| CB_burial_14_7---sequence logo (eps format) (pdf format) | T0200.t04.CB_burial_14_7-logo | 2004 Jun 14 17:53:36 |
| near-backbone-11 structure prediction (rdb format) (seq format) | T0200.t04.near-backbone-11 | 2004 Jul 5 19:31:26 |
| Script for T0200.t04.near-backbone-11 coloring in rasmol | T0200.t04.near-backbone-11-color.rasmol | 2004 Jul 5 19:31:27 |
| Target model scores |
| amino acid single-track target model scores of PDB | T0200.t2k-w0.5-scores.html | 2004 Jul 5 19:31:31 |
| amino acid single-track target model scores of PDB | T0200.t04-w0.5-scores.html | 2004 Jun 15 23:57:53 |
| amino acid/100-30-str2 two-track target model scores | T0200.t2k-100-30-str2-scores.html | 2004 Jul 5 19:31:35 |
| amino acid/100-30-stride-ebghtl two-track target model scores | T0200.t2k-100-30-stride-ebghtl-scores.html | 2004 Jul 5 19:31:39 |
| amino acid/100-30-dssp-ebghstl two-track target model scores | T0200.t2k-100-30-dssp-ebghstl-scores.html | 2004 Jul 5 19:31:42 |
| amino acid/100-30-alpha two-track target model scores | T0200.t2k-100-30-alpha-scores.html | 2004 Jul 5 19:31:44 |
| amino acid/100-30-bys two-track target model scores | T0200.t2k-100-30-bys-scores.html | 2004 Jul 16 12:48:50 |
| amino acid/100-30-dssp-ehl2 two-track target model scores | T0200.t2k-100-30-dssp-ehl2-scores.html | 2004 Jul 5 19:31:48 |
| amino acid/100-30-CB_burial_14_7 two-track target model scores | T0200.t2k-100-30-CB_burial_14_7-scores.html | 2004 Jul 5 19:31:51 |
| amino acid/100-40-40-str2+CB_burial_14_7 two-track target model scores | T0200.t2k-100-40-40-str2+CB_burial_14_7-scores.html | 2004 Jul 16 12:54:57 |
| amino acid/100-30-str2 two-track target model scores | T0200.t04-100-30-str2-scores.html | 2004 Jun 16 0:01:02 |
| amino acid/100-30-stride-ebghtl two-track target model scores | T0200.t04-100-30-stride-ebghtl-scores.html | 2004 Jun 16 0:04:01 |
| amino acid/100-30-dssp-ebghstl two-track target model scores | T0200.t04-100-30-dssp-ebghstl-scores.html | 2004 Jun 16 0:06:59 |
| amino acid/100-30-alpha two-track target model scores | T0200.t04-100-30-alpha-scores.html | 2004 Jun 16 0:09:57 |
| amino acid/100-30-bys two-track target model scores | T0200.t04-100-30-bys-scores.html | 2004 Jul 16 12:57:35 |
| amino acid/100-30-dssp-ehl2 two-track target model scores | T0200.t04-100-30-dssp-ehl2-scores.html | 2004 Jun 16 0:12:55 |
| amino acid/100-30-CB_burial_14_7 two-track target model scores | T0200.t04-100-30-CB_burial_14_7-scores.html | 2004 Jun 16 0:15:55 |
| amino acid/100-40-40-str2+CB_burial_14_7 two-track target model scores | T0200.t04-100-40-40-str2+CB_burial_14_7-scores.html | 2004 Jul 16 13:00:14 |
| Template model scores |
| Annotated template model scores | T0200.template-lib-scores.html | 2004 Jun 9 12:37:46 |
| Top Hits |
| Best scoring hits from all models | T0200.t04.best-scores.html | 2004 Jul 23 13:40:36 |
| Alignments for Top Hits |
| T02 Many Alignments Summary | T0200.t04.many_alignments.html | 2004 Jul 23 13:40:37 |
| T02 Top Models Summary | T0200.t04.top_reported_alignments.html | 2004 Jul 23 13:40:38 |