T0216 TM0727, Thermotoga maritima
| Description | Link to file | Date |
| Inputs |
| Submitted sequence(s) | T0216.a2m | 2004 Jul 21 12:58:06 |
| Multiple alignment |
| SAM_t04 multiple alignment in a2m format | T0216.t04.a2m.gz | 2004 Jul 21 13:06:17 |
| SAM_t04 multiple alignment in pretty html format | T0216.t04.pa.html | 2004 Jul 21 13:06:21 |
| SAM_t04 target hidden Markov model | T0216.t04.w0.5.mod | 2004 Jul 21 13:06:24 |
| SAM_t04 multiple alignment---sequence logo (eps format) (pdf format) | T0216.t04.w0.5-logo | 2004 Jul 21 13:16:09 |
| Script for highlighting in rasmol | conserved_t04 | 2004 Jul 21 13:16:17 |
| SAM_t2k multiple alignment in a2m format | T0216.t2k.a2m.gz | 2004 Jul 21 13:22:55 |
| SAM_t2k multiple alignment in pretty html format | T0216.t2k.pa.html | 2004 Jul 21 13:23:01 |
| SAM_t2k target hidden Markov model | T0216.t2k.w0.5.mod | 2004 Jul 21 13:23:03 |
| SAM_t2k multiple alignment---sequence logo (eps format) (pdf format) | T0216.t2k.w0.5-logo | 2004 Jul 21 13:23:13 |
| Script for highlighting in rasmol | conserved_t2k | 2004 Jul 21 13:23:13 |
| Secondary Structure Prediction (Explanation of secondary-structure predictions) |
| str2 structure prediction (rdb format) (seq format) | T0216.t2k.str2 | 2004 Jul 21 13:23:14 |
| Script for T0216.t2k.str2 coloring in rasmol | T0216.t2k.str2-color.rasmol | 2004 Jul 21 13:23:14 |
| str2---sequence logo (eps format) (pdf format) | T0216.t2k.str2-logo | 2004 Jul 21 13:23:24 |
| stride-ebghtl structure prediction (rdb format) (seq format) | T0216.t2k.stride-ebghtl | 2004 Jul 21 13:23:04 |
| Script for T0216.t2k.stride-ebghtl coloring in rasmol | T0216.t2k.stride-ebghtl-color.rasmol | 2004 Jul 21 13:23:24 |
| stride-ebghtl---sequence logo (eps format) (pdf format) | T0216.t2k.stride-ebghtl-logo | 2004 Jul 21 13:23:32 |
| dssp-ebghstl structure prediction (rdb format) (seq format) | T0216.t2k.dssp-ebghstl | 2004 Jul 21 13:23:33 |
| Script for T0216.t2k.dssp-ebghstl coloring in rasmol | T0216.t2k.dssp-ebghstl-color.rasmol | 2004 Jul 21 13:23:34 |
| dssp-ebghstl---sequence logo (eps format) (pdf format) | T0216.t2k.dssp-ebghstl-logo | 2004 Jul 21 13:23:42 |
| alpha structure prediction (rdb format) (seq format) | T0216.t2k.alpha | 2004 Jul 21 13:23:43 |
| Script for T0216.t2k.alpha coloring in rasmol | T0216.t2k.alpha-color.rasmol | 2004 Jul 21 13:23:43 |
| alpha---sequence logo (eps format) | T0216.t2k.alpha-logo | 2004 Jul 21 13:23:44 |
| bys structure prediction (rdb format) (seq format) | T0216.t2k.bys | 2004 Jul 21 13:23:53 |
| Script for T0216.t2k.bys coloring in rasmol | T0216.t2k.bys-color.rasmol | 2004 Jul 21 13:23:53 |
| bys---sequence logo (eps format) | T0216.t2k.bys-logo | 2004 Jul 21 13:23:54 |
| dssp-ehl2 structure prediction (rdb format) (seq format) | T0216.t2k.dssp-ehl2 | 2004 Jul 21 13:24:03 |
| Script for T0216.t2k.dssp-ehl2 coloring in rasmol | T0216.t2k.dssp-ehl2-color.rasmol | 2004 Jul 21 13:24:03 |
| dssp-ehl2---sequence logo (eps format) | T0216.t2k.dssp-ehl2-logo | 2004 Jul 21 13:24:03 |
| CB_burial_14_7 structure prediction (rdb format) (seq format) | T0216.t2k.CB_burial_14_7 | 2004 Jul 21 13:24:12 |
| Script for T0216.t2k.CB_burial_14_7 coloring in rasmol | T0216.t2k.CB_burial_14_7-color.rasmol | 2004 Jul 21 13:24:12 |
| CB_burial_14_7---sequence logo (eps format) (pdf format) | T0216.t2k.CB_burial_14_7-logo | 2004 Jul 21 13:24:22 |
| near-backbone-11 structure prediction (rdb format) (seq format) | T0216.t2k.near-backbone-11 | 2004 Jul 21 13:24:23 |
| Script for T0216.t2k.near-backbone-11 coloring in rasmol | T0216.t2k.near-backbone-11-color.rasmol | 2004 Jul 21 13:24:23 |
| str2 structure prediction (rdb format) (seq format) | T0216.t04.str2 | 2004 Jul 21 13:24:25 |
| Script for T0216.t04.str2 coloring in rasmol | T0216.t04.str2-color.rasmol | 2004 Jul 21 13:24:25 |
| str2---sequence logo (eps format) (pdf format) | T0216.t04.str2-logo | 2004 Jul 21 13:24:35 |
| stride-ebghtl structure prediction (rdb format) (seq format) | T0216.t04.stride-ebghtl | 2004 Jul 21 13:06:27 |
| Script for T0216.t04.stride-ebghtl coloring in rasmol | T0216.t04.stride-ebghtl-color.rasmol | 2004 Jul 21 13:24:35 |
| stride-ebghtl---sequence logo (eps format) | T0216.t04.stride-ebghtl-logo | 2004 Jul 21 13:24:36 |
| dssp-ebghstl structure prediction (rdb format) (seq format) | T0216.t04.dssp-ebghstl | 2004 Jul 21 13:24:45 |
| Script for T0216.t04.dssp-ebghstl coloring in rasmol | T0216.t04.dssp-ebghstl-color.rasmol | 2004 Jul 21 13:24:45 |
| dssp-ebghstl---sequence logo (eps format) (pdf format) | T0216.t04.dssp-ebghstl-logo | 2004 Jul 21 13:24:54 |
| alpha structure prediction (rdb format) (seq format) | T0216.t04.alpha | 2004 Jul 21 13:24:55 |
| Script for T0216.t04.alpha coloring in rasmol | T0216.t04.alpha-color.rasmol | 2004 Jul 21 13:24:55 |
| alpha---sequence logo (eps format) | T0216.t04.alpha-logo | 2004 Jul 21 13:24:56 |
| bys structure prediction (rdb format) (seq format) | T0216.t04.bys | 2004 Jul 21 13:25:05 |
| Script for T0216.t04.bys coloring in rasmol | T0216.t04.bys-color.rasmol | 2004 Jul 21 13:25:05 |
| bys---sequence logo (eps format) | T0216.t04.bys-logo | 2004 Jul 21 13:25:06 |
| dssp-ehl2 structure prediction (rdb format) (seq format) | T0216.t04.dssp-ehl2 | 2004 Jul 21 13:25:14 |
| Script for T0216.t04.dssp-ehl2 coloring in rasmol | T0216.t04.dssp-ehl2-color.rasmol | 2004 Jul 21 13:25:15 |
| dssp-ehl2---sequence logo (eps format) (pdf format) | T0216.t04.dssp-ehl2-logo | 2004 Jul 21 13:25:22 |
| CB_burial_14_7 structure prediction (rdb format) (seq format) | T0216.t04.CB_burial_14_7 | 2004 Jul 21 13:25:24 |
| Script for T0216.t04.CB_burial_14_7 coloring in rasmol | T0216.t04.CB_burial_14_7-color.rasmol | 2004 Jul 21 13:25:24 |
| CB_burial_14_7---sequence logo (eps format) (pdf format) | T0216.t04.CB_burial_14_7-logo | 2004 Jul 21 13:25:33 |
| near-backbone-11 structure prediction (rdb format) (seq format) | T0216.t04.near-backbone-11 | 2004 Jul 21 13:25:35 |
| Script for T0216.t04.near-backbone-11 coloring in rasmol | T0216.t04.near-backbone-11-color.rasmol | 2004 Jul 21 13:25:35 |
| Target model scores |
| amino acid single-track target model scores of PDB | T0216.t2k-w0.5-scores.html | 2004 Jul 21 13:27:55 |
| amino acid single-track target model scores of PDB | T0216.t04-w0.5-scores.html | 2004 Jul 21 13:29:50 |
| amino acid/100-30-str2 two-track target model scores | T0216.t2k-100-30-str2-scores.html | 2004 Jul 21 13:32:21 |
| amino acid/100-30-stride-ebghtl two-track target model scores | T0216.t2k-100-30-stride-ebghtl-scores.html | 2004 Jul 21 13:34:39 |
| amino acid/100-30-dssp-ebghstl two-track target model scores | T0216.t2k-100-30-dssp-ebghstl-scores.html | 2004 Jul 21 13:37:05 |
| amino acid/100-30-alpha two-track target model scores | T0216.t2k-100-30-alpha-scores.html | 2004 Jul 21 13:39:23 |
| amino acid/100-30-bys two-track target model scores | T0216.t2k-100-30-bys-scores.html | 2004 Jul 21 13:41:38 |
| amino acid/100-30-dssp-ehl2 two-track target model scores | T0216.t2k-100-30-dssp-ehl2-scores.html | 2004 Jul 21 13:43:54 |
| amino acid/100-30-CB_burial_14_7 two-track target model scores | T0216.t2k-100-30-CB_burial_14_7-scores.html | 2004 Jul 21 13:46:14 |
| amino acid/100-40-40-str2+CB_burial_14_7 two-track target model scores | T0216.t2k-100-40-40-str2+CB_burial_14_7-scores.html | 2004 Jul 21 13:48:53 |
| amino acid/100-30-str2 two-track target model scores | T0216.t04-100-30-str2-scores.html | 2004 Jul 21 13:50:21 |
| amino acid/100-30-stride-ebghtl two-track target model scores | T0216.t04-100-30-stride-ebghtl-scores.html | 2004 Jul 21 13:51:47 |
| amino acid/100-30-dssp-ebghstl two-track target model scores | T0216.t04-100-30-dssp-ebghstl-scores.html | 2004 Jul 21 13:53:12 |
| amino acid/100-30-alpha two-track target model scores | T0216.t04-100-30-alpha-scores.html | 2004 Jul 21 13:54:40 |
| amino acid/100-30-bys two-track target model scores | T0216.t04-100-30-bys-scores.html | 2004 Jul 21 13:56:12 |
| amino acid/100-30-dssp-ehl2 two-track target model scores | T0216.t04-100-30-dssp-ehl2-scores.html | 2004 Jul 21 13:57:37 |
| amino acid/100-30-CB_burial_14_7 two-track target model scores | T0216.t04-100-30-CB_burial_14_7-scores.html | 2004 Jul 21 13:59:00 |
| amino acid/100-40-40-str2+CB_burial_14_7 two-track target model scores | T0216.t04-100-40-40-str2+CB_burial_14_7-scores.html | 2004 Jul 21 14:00:34 |
| Template model scores |
| Annotated template model scores | T0216.template-lib-scores.html | 2004 Jul 21 14:08:32 |
| Top Hits |
| Best scoring hits from all models | T0216.t2k.best-scores.html | 2004 Jul 21 14:08:33 |
| Alignments for Top Hits |
| T02 Many Alignments Summary | T0216.t2k.many_alignments.html | 2004 Jul 21 14:11:09 |
| T02 Top Models Summary | T0216.t2k.top_reported_alignments.html | 2004 Jul 21 14:11:28 |
| multiple alignment of templates (a2m.gz format) (pa format) | all-align | 2004 Jul 21 14:11:30 |
| Undertaker (3d) files |
| Multiple alignment for undertaker templates | T0216.t2k-2track-undertaker.a2m | 2004 Jul 21 14:12:40 |
| Undertaker input for top alignments | T0216.t2k.undertaker-align.under | 2004 Jul 21 14:12:40 |
| Undertaker scores for decoys | decoys/score-all.try1.rdb | 2004 Aug 8 22:33:19 |