Best Alignments for T0216

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1emsA/T0216-1emsA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1emsA/T0216-1emsA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 2.7145e+006.4836e-01 1emsA d.160.1.1
d.13.1.1
1kafA/T0216-1kafA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1kafA/T0216-1kafA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 5.9468e+007.1589e-01 d.199.1.1
1vjzA/T0216-1vjzA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1vjzA/T0216-1vjzA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 1.8420e+012.2994e+00 c.1.8.3
1h4pA/T0216-1h4pA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1h4pA/T0216-1h4pA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 1.8535e+013.0445e+00 c.1.8.3
1hqmA/T0216-1hqmA-t2k-local-adpstyle5.a2m 1hqmA/T0216-1hqmA-t2k-local-adpstyle5.al 2.1249e+011.5907e+01 i.8.1.1
1l9uA/T0216-1l9uA-t2k-local-adpstyle1.a2m 1l9uA/T0216-1l9uA-t2k-local-adpstyle1.al 2.2114e+011.6665e+01 i.8.1.1
1j0dA/T0216-1j0dA-t2k-local-adpstyle5.a2m 1j0dA/T0216-1j0dA-t2k-local-adpstyle5.al 2.3416e+011.7821e+01 c.79.1.1
1danL/1edmB-T0216-fssp-local-adpstyle5.a2m 1danL/1edmB-T0216-fssp-local-adpstyle5.al 2.3658e+018.0123e+00 1edmB g.3.11.1
g.32.1.1
1j0eA/T0216-1j0eA-t2k-local-adpstyle5.a2m 1j0eA/T0216-1j0eA-t2k-local-adpstyle5.al 2.4036e+011.8376e+01 c.79.1.1
1sdmA/T0216-1sdmA-t2k-global-adpstyle1.a2m 1sdmA/T0216-1sdmA-t2k-global-adpstyle1.al 2.6279e+016.7050e+00

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001