List of Tables

• Comparison of Ribosomal RNA Modifications: Species from Three Phylogenetic Domains
• Overall Detection Rates of tRNA Search Programs
• tRNA Prediction within Annotated Database Subsets
• tRNAs identified in genomic databases by various search methods
• False positive rates for actual & simulated genomes
• Analysis time for various genomes and search algorithms
• Original and Revised Wobble Rules
• Genome Distribution of tRNAs
• Four-box tRNA Families in C. elegans
• Other tRNA Families in C. elegans
• C. elegans tRNA Gene Copy vs. Codon Frequency
• Summary of states within snoRNA probabilistic model
• C/D Box snoRNAs in S. cerevisiae that function as methylation guides
• Predicted Target Ribose Methylation Sites for S. acidocaldarius sRNAs
• Predicted Target Ribose Methylation Sites for S. solfataricus sRNAs