SAM_T02 Results for T0398
Please cite the following papers:
- Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R.
``What is the value added by human intervention in protein structure prediction?''
Proteins: Structure Function and Genetics 45(S5):86-91,2001
- Karplus, K. and Karchin, R. and Draper, J. and Casper, J. and Mandel-Gutfreund, Y. and Diekhans, M. and Hughey, R.
``Combining local-structure, fold-recognition, and new-fold methods for protein structure prediction''
Proteins: Structure Function and Genetics53(S6):491-496,15 Oct 2003
- Rachel Karchin, Melissa Cline, Yael Mandel-Gutfreund, and Kevin Karplus.
``Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry.''
Proteins: Structure, Function, and Genetics, 51(4):504--514, June 2003.
When SAM_T02 finishes, you should see links to
- Inputs and Multiple Alignments
- Secondary Structure Prediction
- Target model scores with annotation
- Template model scores with annotation
- Top Hits -- best scoring templates from all models
- Alignments for Top Hits
| Description |
Link to file |
Date |
|
Inputs and Multiple Alignments
|
| Submitted sequence(s) |
T0398.a2m |
2008 May 12 9:20:17 |
| SAM_T02 multiple alignment in pretty html format |
T0398.t2k.pa.html |
2008 May 12 9:31:26 |
| DSSP 3-value prediction (rdb format) |
T0398.t2k.dssp-ehl2 |
2008 May 12 9:32:53 |
Please cite the following papers:
- Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R.
``What is the value added by human intervention in protein structure prediction?''
Proteins: Structure Function and Genetics 45(S5):86-91,2001
- Karplus, K. and Karchin, R. and Draper, J. and Casper, J. and Mandel-Gutfreund, Y. and Diekhans, M. and Hughey, R.
``Combining local-structure, fold-recognition, and new-fold methods for protein structure prediction''
Proteins: Structure Function and Genetics53(S6):491-496,15 Oct 2003
- Rachel Karchin, Melissa Cline, Yael Mandel-Gutfreund, and Kevin Karplus.
``Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry.''
Proteins: Structure, Function, and Genetics, 51(4):504--514, June 2003.
SAM_T02 web system designed by Rachel Karchin and Kevin Karplus
Maintained by Kevin Karplus:
karplus@soe.ucsc.edu