T0398.best_hits

Sequence_ID	Length	Evalue	FSSP-rep	SCOP_domain
1pjcA	361	4.2706e-26	1sayA	c.23.12.2
				c.2.1.4
1sayA	361	8.5750e-26	1sayA	c.2.1.4
				c.23.12.2
2eezA	369	2.7608e-25
2vojA	371	3.4169e-24
2vhvA	377	9.8694e-24
2vhxA	377	1.2065e-23
2rirA	300	2.5327e-22
1l7dA	384	4.5415e-21		c.23.12.2
				c.2.1.4
1x13A	401	9.0432e-20
2dbqA	334	6.8641e-19
1d4fA	431	1.0561e-18	1b3rA	c.2.1.4
				c.23.12.3
2fsvA	384	3.5577e-18		c.2.1.4
				c.23.12.2
1b3rA	431	3.7868e-18	1b3rA	c.2.1.4
				c.23.12.3
1ptjA	381	4.2884e-18		c.23.12.2
				c.2.1.4
2frdA	384	4.5137e-18		c.23.12.2
				c.2.1.4
2fr8A	384	4.9082e-18		c.2.1.4
				c.23.12.2
1nm5A	384	6.8245e-18		c.23.12.2
				c.2.1.4
1xwfA	431	6.9723e-18		c.23.12.3
				c.2.1.4
1li4A	432	8.6337e-18		c.2.1.4
				c.23.12.3
2q50A	328	1.6404e-17
1a7aA	432	1.7583e-17	1b3rA	c.23.12.3
				c.2.1.4
1wwkA	307	5.1522e-17
1ygyA	529	9.0669e-17		d.81.2.2
				c.23.12.1
				c.2.1.4
				d.58.18.1
1v8bA	479	1.2309e-16		c.23.12.3
				c.2.1.4
2cukA	311	1.2881e-16
2gcgA	330	3.1801e-16
2g76A	335	3.1635e-15
2pi1A	334	4.7629e-15
1qp8A	303	7.6880e-15	1qp8A	c.23.12.1
				c.2.1.4
1j4aA	333	8.3885e-15		c.23.12.1
				c.2.1.4
2d0iA	333	9.6519e-15
1xdwA	331	1.1781e-14
1gdhA	320	1.2481e-14	1gdhA	c.23.12.1
				c.2.1.4
1dxyA	333	2.2078e-14		c.2.1.4
				c.23.12.1
1mx3A	347	3.0664e-14		c.23.12.1
				c.2.1.4
2fssA	365	9.6490e-14
1hkuA	358	1.1409e-13		c.23.12.1
				c.2.1.4
2j6iA	364	1.2089e-13
2eklA	313	1.4296e-13
2omeA	336	1.8695e-13
1psdA	409	3.9666e-13	1psdA	c.2.1.4
				d.58.18.1
				c.23.12.1
2dldA	337	4.7360e-13	1dxy	c.23.12.1
				c.2.1.4
1j49A	333	7.3237e-13		c.2.1.4
				c.23.12.1
1sc6A	404	1.4898e-12		c.23.12.1
				d.58.18.1
				c.2.1.4
1ybaA	410	1.9505e-12		c.23.12.1
				d.58.18.1
				c.2.1.4
2p9gA	410	2.5234e-12		d.58.18.1
				c.2.1.4
				c.23.12.1
2p9cA	410	2.5234e-12		c.23.12.1
				c.2.1.4
				d.58.18.1
2nacA	393	3.3708e-12	2nadA	c.23.12.1
				c.2.1.4
2nadA	393	3.4109e-12	2nadA	c.23.12.1
				c.2.1.4
2gsdA	402	2.8000e-11
1dxy	331	4.2030e-11	1dxy
2o4cA	380	6.3383e-11
2go1A	401	7.5972e-11
1gpjA	404	1.6081e-10		c.2.1.7
				d.58.39.1
				a.151.1.1
1yqdA	366	6.4109e-08
1np3A	338	1.0835e-07		a.100.1.2
				c.2.1.6
2cf5A	357	1.2141e-07
2f1kA	279	1.7794e-07		c.2.1.6
				a.100.1.12
1uufA	369	2.1841e-07		c.2.1.1

Sequence_ID	Length	Evalue	FSSP-rep	SCOP_domain
				b.35.1.2
1vpdA	299	3.4150e-07		a.100.1.1
				c.2.1.6
1luaA	287	5.7489e-07		c.2.1.7
				c.58.1.4
2jhfA	374	9.1502e-07		c.2.1.1
				b.35.1.2
1kolA	398	1.0054e-06		b.35.1.2
				c.2.1.1
1bw9A	356	1.2212e-06	1bw9A	c.58.1.1
				c.2.1.7
1c1dA	355	1.7841e-06	1bw9A	c.58.1.1
				c.2.1.7
2eggA	297	1.8810e-06
2hk9A	275	2.0792e-06
1e3jA	352	2.7630e-06	1e3jA	c.2.1.1
				b.35.1.2
1nytA	271	3.2189e-06		c.2.1.7
				c.58.1.5
2g5cA	281	3.4760e-06		c.2.1.6
				a.100.1.12
1ee2A	373	4.3641e-06	2ohxA	b.35.1.2
				c.2.1.1
1u3wA	374	5.1809e-06		c.2.1.1
				b.35.1.2
2ohxA	374	6.6047e-06	2ohxA	b.35.1.2
				c.2.1.1
2d5cA	263	7.4100e-06
2qrlA	394	8.2801e-06
1bg6A	359	8.3510e-06		a.100.1.5
				c.2.1.6
1axeA	374	1.0761e-05	2ohxA	b.35.1.2
				c.2.1.1
1pl8A	356	1.1066e-05		c.2.1.1
				b.35.1.2
1n8kA	374	1.2153e-05		b.35.1.2
				c.2.1.1
2o7sA	523	1.5008e-05
1axgA	374	1.6011e-05	2ohxA	b.35.1.2
				c.2.1.1
1a71A	374	1.6566e-05	2ohxA	c.2.1.1
				b.35.1.2
1lluA	342	1.8466e-05		b.35.1.2
				c.2.1.1
2hcyA	347	2.0167e-05
2gptA	523	2.6242e-05
1bg6	350	3.8182e-05	1bg6
1p0fA	373	3.8461e-05		c.2.1.1
				b.35.1.2
1vj0A	380	4.5285e-05		b.35.1.2
				c.2.1.1
1iz0A	302	4.5787e-05		b.35.1.2
				c.2.1.1
1yb5A	351	5.9454e-05		c.2.1.1
				b.35.1.2
3c24A	286	7.1067e-05
2cdcA	366	7.6916e-05
2ouiA	360	8.0143e-05
2d8aA	348	8.8393e-05
1piwA	360	1.0603e-04		c.2.1.1
				b.35.1.2
2h6eA	344	1.1678e-04
2cvzA	289	1.2096e-04		a.100.1.1
				c.2.1.6
1p77A	272	1.4070e-04		c.2.1.7
				c.58.1.5
1ykfA	352	1.4479e-04	1pedA	b.35.1.2
				c.2.1.1
1h2bA	359	1.5486e-04		c.2.1.1
				b.35.1.2
1y9aA	360	1.6254e-04
1kevA	351	2.2081e-04	1pedA	c.2.1.1
				b.35.1.2
1vl6A	388	2.3320e-04		c.58.1.3
				c.2.1.7
1o89A	345	2.3870e-04		b.35.1.2
				c.2.1.1
1lehA	364	2.5040e-04	1bw9A	c.58.1.1
				c.2.1.7
1lsuA	147	2.6423e-04		c.2.1.9
2hmvA	144	5.2658e-04		c.2.1.9
1jqbA	351	5.2827e-04		c.2.1.1
				b.35.1.2
1d1tA	373	6.4636e-04	2ohxA	c.2.1.1
				b.35.1.2
2haeA	386	6.9426e-04		c.2.1.7
				c.58.1.3
1mc5A	374	6.9482e-04		b.35.1.2
				c.2.1.1
2fzeA	373	6.9482e-04		b.35.1.2
				c.2.1.1
1f8fA	371	7.1372e-04		c.2.1.1
				b.35.1.2
1d1sA	373	7.7065e-04	2ohxA	c.2.1.1
				b.35.1.2
1mv8A	436	8.2319e-04		c.26.3.1
				a.100.1.4
				c.2.1.6
2fzwA	373	9.0533e-04		b.35.1.2
				c.2.1.1

Sequence_ID	Length	Evalue	FSSP-rep	SCOP_domain
1pedA	351	9.6916e-04	1pedA	b.35.1.2
				c.2.1.1
1hdyA	374	9.7751e-04	2ohxA	c.2.1.1
				b.35.1.2
1u3uA	374	9.7751e-04		b.35.1.2
				c.2.1.1
1htbA	374	9.7751e-04	2ohxA	b.35.1.2
				c.2.1.1
1hdzA	374	9.8694e-04	2ohxA	c.2.1.1
				b.35.1.2
1u3tA	374	9.9163e-04		c.2.1.1
				b.35.1.2
1hwxA	501	1.0124e-03	1hwyA	c.2.1.7
				c.58.1.1
2dphA	398	1.1189e-03
2eihA	343	1.1224e-03
1nhsA	447	1.2335e-03		c.3.1.5
				d.87.1.1
				c.3.1.5
2a9fA	398	1.2375e-03
1nhpA	447	1.3333e-03		d.87.1.1
				c.3.1.5
				c.3.1.5
1gtmA	419	1.4460e-03	1hwyA	c.2.1.7
				c.58.1.1
2r9zA	463	1.4490e-03
3cosA	381	1.4797e-03
1rjwA	339	1.6731e-03		b.35.1.2
				c.2.1.1
1zcjA	463	2.2195e-03
2vdcG	456	2.4214e-03
1ju9A	374	2.5429e-03		c.2.1.1
				b.35.1.2
1qv6A	374	2.5487e-03		c.2.1.1
				b.35.1.2
1mgoA	374	2.5982e-03		c.2.1.1
				b.35.1.2
1qlhA	374	2.8831e-03	2ohxA	b.35.1.2
				c.2.1.1
1cdoA	374	3.0351e-03	2ohxA	b.35.1.2
				c.2.1.1
1z82A	335	4.0248e-03
2hdhA	293	4.7883e-03	2hdhA	a.100.1.3
				c.2.1.6
2dvmA	439	5.3943e-03
1nhp	448	5.7057e-03	1nhp
2dm6A	333	7.6219e-03		b.35.1.2
				c.2.1.1
2d1yA	256	9.6523e-03		c.2.1.2
1xhlA	297	9.7617e-03		c.2.1.2
1ydeA	270	1.0938e-02		c.2.1.2
1x1eA	239	1.1814e-02
1b0aA	288	1.3215e-02	1a4iA	c.2.1.7
				c.58.1.2
1ae1A	273	2.0830e-02	1bdb	c.2.1.2
2ekpA	239	2.5268e-02
1crwG	333	9.6536e-02	1dssG	d.81.1.1
				c.2.1.3
2dwcA	433	2.5214e-01

Please cite the following papers:

Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001
Karplus, K. and Karchin, R. and Draper, J. and Casper, J. and Mandel-Gutfreund, Y. and Diekhans, M. and Hughey, R. ``Combining local-structure, fold-recognition, and new-fold methods for protein structure prediction'' Proteins: Structure Function and Genetics53(S6):491-496,15 Oct 2003
Rachel Karchin, Melissa Cline, Yael Mandel-Gutfreund, and Kevin Karplus. ``Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry.'' Proteins: Structure, Function, and Genetics, 51(4):504--514, June 2003.