Please cite the following papers:
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Description | Link to file | Date |
Inputs |
Submitted sequence(s) | T0384.a2m | 2006 Jul 17 14:51:37 |
README file | README | 2006 Jul 18 9:52:00 |
Provided documentation | T0384.doc.html | 2006 Jul 13 17:29:24 |
Quick blastp of non-redundant PDB | T0384.pdb.blast | 2006 Jul 18 9:52:06 |
Multiple alignment |
SAM_t06 multiple alignment in a2m format | T0384.t06.a2m.gz | 2006 Jul 18 10:45:54 |
SAM_t06 multiple alignment in pretty html format | T0384.t06.pa.html | 2006 Jul 18 10:46:03 |
SAM_t06 target hidden Markov model | T0384.t06.w0.5.mod | 2006 Jul 18 10:46:22 |
SAM_t06 multiple alignment---sequence logo (eps format) (pdf format) | T0384.t06.w0.5-logo | 2006 Jul 18 10:46:52 |
Script for highlighting in rasmol | conserved_t06 | 2006 Jul 18 10:46:54 |
SAM_t04 multiple alignment in a2m format | T0384.t04.a2m.gz | 2006 Jul 18 11:23:45 |
SAM_t04 multiple alignment in pretty html format | T0384.t04.pa.html | 2006 Jul 18 11:23:52 |
SAM_t04 target hidden Markov model | T0384.t04.w0.5.mod | 2006 Jul 18 11:24:02 |
SAM_t04 multiple alignment---sequence logo (eps format) (pdf format) | T0384.t04.w0.5-logo | 2006 Jul 18 11:24:19 |
Script for highlighting in rasmol | conserved_t04 | 2006 Jul 18 11:24:20 |
SAM_t2k multiple alignment in a2m format | T0384.t2k.a2m.gz | 2006 Jul 18 11:46:26 |
SAM_t2k multiple alignment in pretty html format | T0384.t2k.pa.html | 2006 Jul 18 11:46:35 |
SAM_t2k target hidden Markov model | T0384.t2k.w0.5.mod | 2006 Jul 18 11:46:41 |
SAM_t2k multiple alignment---sequence logo (eps format) (pdf format) | T0384.t2k.w0.5-logo | 2006 Jul 18 11:46:53 |
Script for highlighting in rasmol | conserved_t2k | 2006 Jul 18 11:46:57 |
Secondary Structure Prediction (Explanation of secondary-structure predictions) |
str2 structure prediction (rdb format) (seq format) | T0384.t06.str2 | 2006 Jul 18 10:46:48 |
Script for T0384.t06.str2 coloring in rasmol | T0384.t06.str2-color.rasmol | 2006 Jul 18 11:46:59 |
str2---sequence logo (eps format) (pdf format) | T0384.t06.str2-logo | 2006 Jul 18 11:47:05 |
str2 structure prediction (rdb format) (seq format) | T0384.t04.str2 | 2006 Jul 18 11:24:14 |
Script for T0384.t04.str2 coloring in rasmol | T0384.t04.str2-color.rasmol | 2006 Jul 18 11:47:06 |
str2---sequence logo (eps format) (pdf format) | T0384.t04.str2-logo | 2006 Jul 18 11:47:11 |
str2 structure prediction (rdb format) (seq format) | T0384.t2k.str2 | 2006 Jul 18 11:46:49 |
Script for T0384.t2k.str2 coloring in rasmol | T0384.t2k.str2-color.rasmol | 2006 Jul 18 11:47:12 |
str2---sequence logo (eps format) (pdf format) | T0384.t2k.str2-logo | 2006 Jul 18 11:47:17 |
stride-ebghtl structure prediction (rdb format) (seq format) | T0384.t06.stride-ebghtl | 2006 Jul 18 11:47:28 |
Script for T0384.t06.stride-ebghtl coloring in rasmol | T0384.t06.stride-ebghtl-color.rasmol | 2006 Jul 18 11:47:28 |
stride-ebghtl---sequence logo (eps format) (pdf format) | T0384.t06.stride-ebghtl-logo | 2006 Jul 18 11:47:33 |
stride-ebghtl structure prediction (rdb format) (seq format) | T0384.t04.stride-ebghtl | 2006 Jul 18 11:47:39 |
Script for T0384.t04.stride-ebghtl coloring in rasmol | T0384.t04.stride-ebghtl-color.rasmol | 2006 Jul 18 11:47:40 |
stride-ebghtl---sequence logo (eps format) (pdf format) | T0384.t04.stride-ebghtl-logo | 2006 Jul 18 11:47:45 |
stride-ebghtl structure prediction (rdb format) (seq format) | T0384.t2k.stride-ebghtl | 2006 Jul 18 11:47:48 |
Script for T0384.t2k.stride-ebghtl coloring in rasmol | T0384.t2k.stride-ebghtl-color.rasmol | 2006 Jul 18 11:47:49 |
stride-ebghtl---sequence logo (eps format) (pdf format) | T0384.t2k.stride-ebghtl-logo | 2006 Jul 18 11:47:53 |
dssp-ebghstl structure prediction (rdb format) (seq format) | T0384.t06.dssp-ebghstl | 2006 Jul 18 11:48:04 |
Script for T0384.t06.dssp-ebghstl coloring in rasmol | T0384.t06.dssp-ebghstl-color.rasmol | 2006 Jul 18 11:48:05 |
dssp-ebghstl---sequence logo (eps format) (pdf format) | T0384.t06.dssp-ebghstl-logo | 2006 Jul 18 11:48:09 |
dssp-ebghstl structure prediction (rdb format) (seq format) | T0384.t04.dssp-ebghstl | 2006 Jul 18 11:48:15 |
Script for T0384.t04.dssp-ebghstl coloring in rasmol | T0384.t04.dssp-ebghstl-color.rasmol | 2006 Jul 18 11:48:16 |
dssp-ebghstl---sequence logo (eps format) (pdf format) | T0384.t04.dssp-ebghstl-logo | 2006 Jul 18 11:48:21 |
dssp-ebghstl structure prediction (rdb format) (seq format) | T0384.t2k.dssp-ebghstl | 2006 Jul 18 11:48:24 |
Script for T0384.t2k.dssp-ebghstl coloring in rasmol | T0384.t2k.dssp-ebghstl-color.rasmol | 2006 Jul 18 11:48:25 |
dssp-ebghstl---sequence logo (eps format) (pdf format) | T0384.t2k.dssp-ebghstl-logo | 2006 Jul 18 11:48:30 |
alpha structure prediction (rdb format) (seq format) | T0384.t06.alpha | 2006 Jul 18 11:48:38 |
Script for T0384.t06.alpha coloring in rasmol | T0384.t06.alpha-color.rasmol | 2006 Jul 18 11:48:39 |
alpha---sequence logo (eps format) (pdf format) | T0384.t06.alpha-logo | 2006 Jul 18 11:48:44 |
alpha structure prediction (rdb format) (seq format) | T0384.t04.alpha | 2006 Jul 18 11:48:52 |
Script for T0384.t04.alpha coloring in rasmol | T0384.t04.alpha-color.rasmol | 2006 Jul 18 11:48:53 |
alpha---sequence logo (eps format) (pdf format) | T0384.t04.alpha-logo | 2006 Jul 18 11:48:57 |
alpha structure prediction (rdb format) (seq format) | T0384.t2k.alpha | 2006 Jul 18 11:49:01 |
Script for T0384.t2k.alpha coloring in rasmol | T0384.t2k.alpha-color.rasmol | 2006 Jul 18 11:49:01 |
alpha---sequence logo (eps format) (pdf format) | T0384.t2k.alpha-logo | 2006 Jul 18 11:49:06 |
bys structure prediction (rdb format) (seq format) | T0384.t06.bys | 2006 Jul 18 11:49:18 |
Script for T0384.t06.bys coloring in rasmol | T0384.t06.bys-color.rasmol | 2006 Jul 18 11:49:18 |
bys---sequence logo (eps format) (pdf format) | T0384.t06.bys-logo | 2006 Jul 18 11:49:23 |
bys structure prediction (rdb format) (seq format) | T0384.t04.bys | 2006 Jul 18 11:49:31 |
Script for T0384.t04.bys coloring in rasmol | T0384.t04.bys-color.rasmol | 2006 Jul 18 11:49:32 |
bys---sequence logo (eps format) (pdf format) | T0384.t04.bys-logo | 2006 Jul 18 11:49:37 |
bys structure prediction (rdb format) (seq format) | T0384.t2k.bys | 2006 Jul 18 11:49:43 |
Script for T0384.t2k.bys coloring in rasmol | T0384.t2k.bys-color.rasmol | 2006 Jul 18 11:49:44 |
bys---sequence logo (eps format) (pdf format) | T0384.t2k.bys-logo | 2006 Jul 18 11:49:49 |
dssp-ehl2 structure prediction (rdb format) (seq format) | T0384.t06.dssp-ehl2 | 2006 Jul 18 11:49:52 |
Script for T0384.t06.dssp-ehl2 coloring in rasmol | T0384.t06.dssp-ehl2-color.rasmol | 2006 Jul 18 11:49:53 |
dssp-ehl2---sequence logo (eps format) (pdf format) | T0384.t06.dssp-ehl2-logo | 2006 Jul 18 11:50:00 |
dssp-ehl2 structure prediction (rdb format) (seq format) | T0384.t04.dssp-ehl2 | 2006 Jul 18 11:50:01 |
Script for T0384.t04.dssp-ehl2 coloring in rasmol | T0384.t04.dssp-ehl2-color.rasmol | 2006 Jul 18 11:50:02 |
dssp-ehl2---sequence logo (eps format) (pdf format) | T0384.t04.dssp-ehl2-logo | 2006 Jul 18 11:50:07 |
dssp-ehl2 structure prediction (rdb format) (seq format) | T0384.t2k.dssp-ehl2 | 2006 Jul 18 11:50:09 |
Script for T0384.t2k.dssp-ehl2 coloring in rasmol | T0384.t2k.dssp-ehl2-color.rasmol | 2006 Jul 18 11:50:09 |
dssp-ehl2---sequence logo (eps format) (pdf format) | T0384.t2k.dssp-ehl2-logo | 2006 Jul 18 11:50:14 |
n_notor2 structure prediction (rdb format) (seq format) | T0384.t06.n_notor2 | 2006 Jul 18 11:50:25 |
Script for T0384.t06.n_notor2 coloring in rasmol | T0384.t06.n_notor2-color.rasmol | 2006 Jul 18 11:50:26 |
n_notor2---sequence logo (eps format) (pdf format) | T0384.t06.n_notor2-logo | 2006 Jul 18 11:50:32 |
n_notor2 structure prediction (rdb format) (seq format) | T0384.t04.n_notor2 | 2006 Jul 18 11:50:39 |
Script for T0384.t04.n_notor2 coloring in rasmol | T0384.t04.n_notor2-color.rasmol | 2006 Jul 18 11:50:40 |
n_notor2---sequence logo (eps format) (pdf format) | T0384.t04.n_notor2-logo | 2006 Jul 18 11:50:45 |
n_notor2 structure prediction (rdb format) (seq format) | T0384.t2k.n_notor2 | 2006 Jul 18 11:50:51 |
Script for T0384.t2k.n_notor2 coloring in rasmol | T0384.t2k.n_notor2-color.rasmol | 2006 Jul 18 11:50:52 |
n_notor2---sequence logo (eps format) (pdf format) | T0384.t2k.n_notor2-logo | 2006 Jul 18 11:50:57 |
o_notor2 structure prediction (rdb format) (seq format) | T0384.t06.o_notor2 | 2006 Jul 18 11:51:06 |
Script for T0384.t06.o_notor2 coloring in rasmol | T0384.t06.o_notor2-color.rasmol | 2006 Jul 18 11:51:07 |
o_notor2---sequence logo (eps format) (pdf format) | T0384.t06.o_notor2-logo | 2006 Jul 18 11:51:12 |
o_notor2 structure prediction (rdb format) (seq format) | T0384.t04.o_notor2 | 2006 Jul 18 11:51:20 |
Script for T0384.t04.o_notor2 coloring in rasmol | T0384.t04.o_notor2-color.rasmol | 2006 Jul 18 11:51:21 |
o_notor2---sequence logo (eps format) (pdf format) | T0384.t04.o_notor2-logo | 2006 Jul 18 11:51:26 |
o_notor2 structure prediction (rdb format) (seq format) | T0384.t2k.o_notor2 | 2006 Jul 18 11:51:32 |
Script for T0384.t2k.o_notor2 coloring in rasmol | T0384.t2k.o_notor2-color.rasmol | 2006 Jul 18 11:51:33 |
o_notor2---sequence logo (eps format) (pdf format) | T0384.t2k.o_notor2-logo | 2006 Jul 18 11:51:38 |
n_sep structure prediction (rdb format) (seq format) | T0384.t06.n_sep | 2006 Jul 18 11:51:46 |
Script for T0384.t06.n_sep coloring in rasmol | T0384.t06.n_sep-color.rasmol | 2006 Jul 18 11:51:47 |
n_sep---sequence logo (eps format) (pdf format) | T0384.t06.n_sep-logo | 2006 Jul 18 11:51:52 |
n_sep structure prediction (rdb format) (seq format) | T0384.t04.n_sep | 2006 Jul 18 11:52:00 |
Script for T0384.t04.n_sep coloring in rasmol | T0384.t04.n_sep-color.rasmol | 2006 Jul 18 11:52:01 |
n_sep---sequence logo (eps format) (pdf format) | T0384.t04.n_sep-logo | 2006 Jul 18 11:52:06 |
n_sep structure prediction (rdb format) (seq format) | T0384.t2k.n_sep | 2006 Jul 18 11:52:12 |
Script for T0384.t2k.n_sep coloring in rasmol | T0384.t2k.n_sep-color.rasmol | 2006 Jul 18 11:52:13 |
n_sep---sequence logo (eps format) (pdf format) | T0384.t2k.n_sep-logo | 2006 Jul 18 11:52:18 |
o_sep structure prediction (rdb format) (seq format) | T0384.t06.o_sep | 2006 Jul 18 11:52:27 |
Script for T0384.t06.o_sep coloring in rasmol | T0384.t06.o_sep-color.rasmol | 2006 Jul 18 11:52:28 |
o_sep---sequence logo (eps format) (pdf format) | T0384.t06.o_sep-logo | 2006 Jul 18 11:52:33 |
o_sep structure prediction (rdb format) (seq format) | T0384.t04.o_sep | 2006 Jul 18 11:52:39 |
Script for T0384.t04.o_sep coloring in rasmol | T0384.t04.o_sep-color.rasmol | 2006 Jul 18 11:52:40 |
o_sep---sequence logo (eps format) (pdf format) | T0384.t04.o_sep-logo | 2006 Jul 18 11:52:45 |
o_sep structure prediction (rdb format) (seq format) | T0384.t2k.o_sep | 2006 Jul 18 11:52:51 |
Script for T0384.t2k.o_sep coloring in rasmol | T0384.t2k.o_sep-color.rasmol | 2006 Jul 18 11:52:52 |
o_sep---sequence logo (eps format) (pdf format) | T0384.t2k.o_sep-logo | 2006 Jul 18 11:52:58 |
dssp-ehl2 structure prediction (rdb format) (seq format) | T0384.dssp-ehl2 | 2006 Jul 18 11:53:01 |
Script for T0384.dssp-ehl2 coloring in rasmol | T0384.dssp-ehl2-color.rasmol | 2006 Jul 18 11:53:01 |
dssp-ehl2---sequence logo (eps format) (pdf format) | T0384.dssp-ehl2-logo | 2006 Jul 18 11:53:06 |
CB_burial_14_7 structure prediction (rdb format) (seq format) | T0384.t06.CB_burial_14_7 | 2006 Jul 18 11:53:17 |
Script for T0384.t06.CB_burial_14_7 coloring in rasmol | T0384.t06.CB_burial_14_7-color.rasmol | 2006 Jul 18 11:53:18 |
CB_burial_14_7---sequence logo (eps format) (pdf format) | T0384.t06.CB_burial_14_7-logo | 2006 Jul 18 11:53:23 |
CB_burial_14_7 structure prediction (rdb format) (seq format) | T0384.t04.CB_burial_14_7 | 2006 Jul 18 11:53:29 |
Script for T0384.t04.CB_burial_14_7 coloring in rasmol | T0384.t04.CB_burial_14_7-color.rasmol | 2006 Jul 18 11:53:30 |
CB_burial_14_7---sequence logo (eps format) (pdf format) | T0384.t04.CB_burial_14_7-logo | 2006 Jul 18 11:53:35 |
CB_burial_14_7 structure prediction (rdb format) (seq format) | T0384.t2k.CB_burial_14_7 | 2006 Jul 18 11:53:38 |
Script for T0384.t2k.CB_burial_14_7 coloring in rasmol | T0384.t2k.CB_burial_14_7-color.rasmol | 2006 Jul 18 11:53:39 |
CB_burial_14_7---sequence logo (eps format) (pdf format) | T0384.t2k.CB_burial_14_7-logo | 2006 Jul 18 11:53:45 |
near-backbone-11 structure prediction (rdb format) (seq format) | T0384.t06.near-backbone-11 | 2006 Jul 18 11:53:56 |
Script for T0384.t06.near-backbone-11 coloring in rasmol | T0384.t06.near-backbone-11-color.rasmol | 2006 Jul 18 11:53:57 |
near-backbone-11---sequence logo (eps format) (pdf format) | T0384.t06.near-backbone-11-logo | 2006 Jul 18 11:54:02 |
near-backbone-11 structure prediction (rdb format) (seq format) | T0384.t04.near-backbone-11 | 2006 Jul 18 11:54:09 |
Script for T0384.t04.near-backbone-11 coloring in rasmol | T0384.t04.near-backbone-11-color.rasmol | 2006 Jul 18 11:54:10 |
near-backbone-11---sequence logo (eps format) (pdf format) | T0384.t04.near-backbone-11-logo | 2006 Jul 18 11:54:15 |
near-backbone-11 structure prediction (rdb format) (seq format) | T0384.t2k.near-backbone-11 | 2006 Jul 18 11:54:20 |
Script for T0384.t2k.near-backbone-11 coloring in rasmol | T0384.t2k.near-backbone-11-color.rasmol | 2006 Jul 18 11:54:21 |
near-backbone-11---sequence logo (eps format) (pdf format) | T0384.t2k.near-backbone-11-logo | 2006 Jul 18 11:54:26 |
Target model scores |
amino acid single-track target model scores of PDB | T0384.t06-w0.5-scores.html | 2006 Jul 18 12:00:54 |
amino acid single-track target model scores of PDB | T0384.t04-w0.5-scores.html | 2006 Jul 18 12:07:14 |
amino acid single-track target model scores of PDB | T0384.t2k-w0.5-scores.html | 2006 Jul 18 12:13:36 |
amino acid/100-30-str2 multi-track target model scores | T0384.t06-100-30-str2-scores.html | 2006 Jul 18 12:15:22 |
amino acid/100-30-stride-ebghtl multi-track target model scores | T0384.t06-100-30-stride-ebghtl-scores.html | 2006 Jul 18 12:17:09 |
amino acid/100-30-dssp-ebghstl multi-track target model scores | T0384.t06-100-30-dssp-ebghstl-scores.html | 2006 Jul 18 12:18:56 |
amino acid/100-30-alpha multi-track target model scores | T0384.t06-100-30-alpha-scores.html | 2006 Jul 18 12:20:41 |
amino acid/100-30-bys multi-track target model scores | T0384.t06-100-30-bys-scores.html | 2006 Jul 18 12:22:26 |
amino acid/100-30-dssp-ehl2 multi-track target model scores | T0384.t06-100-30-dssp-ehl2-scores.html | 2006 Jul 18 12:24:11 |
amino acid/100-30-n_notor2 multi-track target model scores | T0384.t06-100-30-n_notor2-scores.html | 2006 Jul 18 12:25:57 |
amino acid/100-30-o_notor2 multi-track target model scores | T0384.t06-100-30-o_notor2-scores.html | 2006 Jul 18 12:27:42 |
amino acid/100-30-n_sep multi-track target model scores | T0384.t06-100-30-n_sep-scores.html | 2006 Jul 18 12:29:29 |
amino acid/100-30-o_sep multi-track target model scores | T0384.t06-100-30-o_sep-scores.html | 2006 Jul 18 12:31:17 |
amino acid/100-30-CB_burial_14_7 multi-track target model scores | T0384.t06-100-30-CB_burial_14_7-scores.html | 2006 Jul 18 12:33:02 |
amino acid/100-30-near-backbone-11 multi-track target model scores | T0384.t06-100-30-near-backbone-11-scores.html | 2006 Jul 18 12:34:45 |
amino acid/100-40-40-str2+CB_burial_14_7 multi-track target model scores | T0384.t06-100-40-40-str2+CB_burial_14_7-scores.html | 2006 Jul 18 12:36:40 |
amino acid/80-60-80-str2+near-backbone-11 multi-track target model scores | T0384.t06-80-60-80-str2+near-backbone-11-scores.html | 2006 Jul 18 12:38:59 |
amino acid/100-30-str2 multi-track target model scores | T0384.t04-100-30-str2-scores.html | 2006 Jul 18 12:41:23 |
amino acid/100-30-stride-ebghtl multi-track target model scores | T0384.t04-100-30-stride-ebghtl-scores.html | 2006 Jul 18 12:43:47 |
amino acid/100-30-dssp-ebghstl multi-track target model scores | T0384.t04-100-30-dssp-ebghstl-scores.html | 2006 Jul 18 12:46:11 |
amino acid/100-30-alpha multi-track target model scores | T0384.t04-100-30-alpha-scores.html | 2006 Jul 18 12:48:33 |
amino acid/100-30-bys multi-track target model scores | T0384.t04-100-30-bys-scores.html | 2006 Jul 18 12:50:55 |
amino acid/100-30-dssp-ehl2 multi-track target model scores | T0384.t04-100-30-dssp-ehl2-scores.html | 2006 Jul 18 12:53:17 |
amino acid/100-30-n_notor2 multi-track target model scores | T0384.t04-100-30-n_notor2-scores.html | 2006 Jul 18 12:55:37 |
amino acid/100-30-o_notor2 multi-track target model scores | T0384.t04-100-30-o_notor2-scores.html | 2006 Jul 18 12:57:57 |
amino acid/100-30-n_sep multi-track target model scores | T0384.t04-100-30-n_sep-scores.html | 2006 Jul 18 13:00:19 |
amino acid/100-30-o_sep multi-track target model scores | T0384.t04-100-30-o_sep-scores.html | 2006 Jul 18 13:02:40 |
amino acid/100-30-CB_burial_14_7 multi-track target model scores | T0384.t04-100-30-CB_burial_14_7-scores.html | 2006 Jul 18 13:05:00 |
amino acid/100-30-near-backbone-11 multi-track target model scores | T0384.t04-100-30-near-backbone-11-scores.html | 2006 Jul 18 13:07:20 |
amino acid/100-40-40-str2+CB_burial_14_7 multi-track target model scores | T0384.t04-100-40-40-str2+CB_burial_14_7-scores.html | 2006 Jul 18 13:09:56 |
amino acid/80-60-80-str2+near-backbone-11 multi-track target model scores | T0384.t04-80-60-80-str2+near-backbone-11-scores.html | 2006 Jul 18 13:12:40 |
amino acid/100-30-str2 multi-track target model scores | T0384.t2k-100-30-str2-scores.html | 2006 Jul 18 13:15:48 |
amino acid/100-30-stride-ebghtl multi-track target model scores | T0384.t2k-100-30-stride-ebghtl-scores.html | 2006 Jul 18 13:18:55 |
amino acid/100-30-dssp-ebghstl multi-track target model scores | T0384.t2k-100-30-dssp-ebghstl-scores.html | 2006 Jul 18 13:22:00 |
amino acid/100-30-alpha multi-track target model scores | T0384.t2k-100-30-alpha-scores.html | 2006 Jul 18 13:25:01 |
amino acid/100-30-bys multi-track target model scores | T0384.t2k-100-30-bys-scores.html | 2006 Jul 18 13:28:03 |
amino acid/100-30-dssp-ehl2 multi-track target model scores | T0384.t2k-100-30-dssp-ehl2-scores.html | 2006 Jul 18 13:31:08 |
amino acid/100-30-n_notor2 multi-track target model scores | T0384.t2k-100-30-n_notor2-scores.html | 2006 Jul 18 13:34:19 |
amino acid/100-30-o_notor2 multi-track target model scores | T0384.t2k-100-30-o_notor2-scores.html | 2006 Jul 18 13:37:51 |
amino acid/100-30-n_sep multi-track target model scores | T0384.t2k-100-30-n_sep-scores.html | 2006 Jul 18 13:41:13 |
amino acid/100-30-o_sep multi-track target model scores | T0384.t2k-100-30-o_sep-scores.html | 2006 Jul 18 13:44:21 |
amino acid/100-30-CB_burial_14_7 multi-track target model scores | T0384.t2k-100-30-CB_burial_14_7-scores.html | 2006 Jul 18 13:47:27 |
amino acid/100-30-near-backbone-11 multi-track target model scores | T0384.t2k-100-30-near-backbone-11-scores.html | 2006 Jul 18 13:50:29 |
amino acid/100-40-40-str2+CB_burial_14_7 multi-track target model scores | T0384.t2k-100-40-40-str2+CB_burial_14_7-scores.html | 2006 Jul 18 13:54:01 |
amino acid/80-60-80-str2+near-backbone-11 multi-track target model scores | T0384.t2k-80-60-80-str2+near-backbone-11-scores.html | 2006 Jul 18 13:57:39 |
Template model scores |
Annotated t06 template model scores | T0384.t06-template-lib-scores.html | 2006 Jul 18 14:51:05 |
Annotated t04 template model scores | T0384.t04-template-lib-scores.html | 2006 Jul 18 15:58:27 |
Annotated t2k template model scores | T0384.t2k-template-lib-scores.html | 2006 Jul 18 17:18:08 |
Top Hits |
Best scoring hits from t06 HMMs | T0384.t06.best-scores.html | 2006 Jul 18 17:18:16 |
Best scoring hits from t04 HMMs | T0384.t04.best-scores.html | 2006 Jul 18 17:18:19 |
Best scoring hits from t2k HMMs | T0384.t2k.best-scores.html | 2006 Jul 18 17:18:22 |
Best scoring hits from combining t06 t04 t2k | T0384.best-scores.html | 2006 Jul 18 17:18:27 |
Alignments for Top Hits |
Top alignments from t06 hits | T0384.t06.top_reported_alignments.html | 2006 Jul 18 20:20:30 |
Top alignments from t04 hits | T0384.t04.top_reported_alignments.html | 2006 Jul 18 20:20:50 |
Top alignments from t2k hits | T0384.t2k.top_reported_alignments.html | 2006 Jul 18 20:21:24 |
Top alignments from combined hits | T0384.top_reported_alignments.html | 2006 Jul 18 20:21:46 |
multiple alignment of templates (a2m.gz format) (pa format) | all-align | 2006 Jul 18 20:23:04 |
Undertaker (3d) files |
Undertaker input for top t06 alignments | T0384.t06.undertaker-align.under | 2006 Jul 18 20:23:05 |
Undertaker input for top t04 alignments | T0384.t04.undertaker-align.under | 2006 Jul 18 20:23:05 |
Undertaker input for top t2k alignments | T0384.t2k.undertaker-align.under | 2006 Jul 18 20:23:06 |
Undertaker input for top combined alignments | T0384.undertaker-align.under | 2006 Jul 18 20:23:06 |
PDB file with model(s) for top alignments | T0384.undertaker-align.pdb.gz | 2006 Jul 18 20:24:29 |
Images of an (incomplete) model created by sidechain replacement on the backbone of the highest scoring template.
Coloring is defined by the dssp rasmol script, to show predicted secondary structure (red for helix, yellow for strand, blue for turn, grey for other).
Front | Top | Side |
500x500 | 500x500 | 500x500 |
Fragment list for undertaker (from fragfinder) | T0384.t06.many.frag.gz | 2006 Jul 18 20:27:31 |
Fragment list for undertaker (from fragfinder) | T0384.t04.many.frag.gz | 2006 Jul 18 20:28:45 |
Fragment list for undertaker (from fragfinder) | T0384.t2k.many.frag.gz | 2006 Jul 18 20:29:57 |
Contact predictions, based on |
contact predictions (rr format) (rr.constraints format) | T0384.449a_45 | 2006 Jul 18 20:45:29 |
First attempted model using undertaker | decoys/T0384.try1-opt2.pdb.gz | 2006 Jul 19 2:05:59 |
Images of complete model in decoys/T0384.try1-opt2.pdb.gz
Coloring is defined by the dssp rasmol script, to show predicted secondary structure (red for helix, yellow for strand, blue for turn, grey for other).
Front | Top | Side |
500x500 | 500x500 | 500x500 |
Please cite the following papers:
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