T0278 1wiy, Thermus thermophilus
| Description | Link to file | Date |
| Inputs |
| Submitted sequence(s) | T0278.a2m | 2004 Aug 13 12:40:52 |
| README file | README | 2004 Aug 13 16:57:23 |
| Provided documentation | T0278.doc.html | 2004 Aug 13 12:40:52 |
| Multiple alignment |
| SAM_t04 multiple alignment in a2m format | T0278.t04.a2m.gz | 2004 Aug 13 18:34:38 |
| SAM_t04 multiple alignment in pretty html format | T0278.t04.pa.html | 2004 Aug 13 18:35:20 |
| SAM_t04 target hidden Markov model | T0278.t04.w0.5.mod | 2004 Aug 13 18:35:29 |
| SAM_t04 multiple alignment---sequence logo (eps format) (pdf format) | T0278.t04.w0.5-logo | 2004 Aug 13 18:35:50 |
| Script for highlighting in rasmol | conserved_t04 | 2004 Aug 13 18:35:49 |
| SAM_t2k multiple alignment in a2m format | T0278.t2k.a2m.gz | 2004 Aug 13 19:35:18 |
| SAM_t2k multiple alignment in pretty html format | T0278.t2k.pa.html | 2004 Aug 13 19:36:08 |
| SAM_t2k target hidden Markov model | T0278.t2k.w0.5.mod | 2004 Aug 13 19:36:17 |
| SAM_t2k multiple alignment---sequence logo (eps format) (pdf format) | T0278.t2k.w0.5-logo | 2004 Aug 13 19:36:34 |
| Script for highlighting in rasmol | conserved_t2k | 2004 Aug 13 19:36:33 |
| Secondary Structure Prediction (Explanation of secondary-structure predictions) |
| str2 structure prediction (rdb format) (seq format) | T0278.t2k.str2 | 2004 Aug 13 19:36:35 |
| Script for T0278.t2k.str2 coloring in rasmol | T0278.t2k.str2-color.rasmol | 2004 Aug 13 19:36:35 |
| str2---sequence logo (eps format) (pdf format) | T0278.t2k.str2-logo | 2004 Aug 13 19:36:40 |
| stride-ebghtl structure prediction (rdb format) (seq format) | T0278.t2k.stride-ebghtl | 2004 Aug 13 19:36:29 |
| Script for T0278.t2k.stride-ebghtl coloring in rasmol | T0278.t2k.stride-ebghtl-color.rasmol | 2004 Aug 13 19:36:39 |
| stride-ebghtl---sequence logo (eps format) (pdf format) | T0278.t2k.stride-ebghtl-logo | 2004 Aug 13 19:36:44 |
| dssp-ebghstl structure prediction (rdb format) (seq format) | T0278.t2k.dssp-ebghstl | 2004 Aug 13 19:36:44 |
| Script for T0278.t2k.dssp-ebghstl coloring in rasmol | T0278.t2k.dssp-ebghstl-color.rasmol | 2004 Aug 13 19:36:46 |
| dssp-ebghstl---sequence logo (eps format) (pdf format) | T0278.t2k.dssp-ebghstl-logo | 2004 Aug 13 19:36:49 |
| alpha structure prediction (rdb format) (seq format) | T0278.t2k.alpha | 2004 Aug 13 19:36:49 |
| Script for T0278.t2k.alpha coloring in rasmol | T0278.t2k.alpha-color.rasmol | 2004 Aug 13 19:36:50 |
| alpha---sequence logo (eps format) (pdf format) | T0278.t2k.alpha-logo | 2004 Aug 13 19:36:54 |
| bys structure prediction (rdb format) (seq format) | T0278.t2k.bys | 2004 Aug 13 19:37:00 |
| Script for T0278.t2k.bys coloring in rasmol | T0278.t2k.bys-color.rasmol | 2004 Aug 13 19:37:00 |
| bys---sequence logo (eps format) (pdf format) | T0278.t2k.bys-logo | 2004 Aug 13 19:37:05 |
| dssp-ehl2 structure prediction (rdb format) (seq format) | T0278.t2k.dssp-ehl2 | 2004 Aug 13 19:37:04 |
| Script for T0278.t2k.dssp-ehl2 coloring in rasmol | T0278.t2k.dssp-ehl2-color.rasmol | 2004 Aug 13 19:37:04 |
| dssp-ehl2---sequence logo (eps format) (pdf format) | T0278.t2k.dssp-ehl2-logo | 2004 Aug 13 19:37:09 |
| CB_burial_14_7 structure prediction (rdb format) (seq format) | T0278.t2k.CB_burial_14_7 | 2004 Aug 13 19:37:09 |
| Script for T0278.t2k.CB_burial_14_7 coloring in rasmol | T0278.t2k.CB_burial_14_7-color.rasmol | 2004 Aug 13 19:37:09 |
| CB_burial_14_7---sequence logo (eps format) (pdf format) | T0278.t2k.CB_burial_14_7-logo | 2004 Aug 13 19:37:14 |
| near-backbone-11 structure prediction (rdb format) (seq format) | T0278.t2k.near-backbone-11 | 2004 Aug 13 19:37:21 |
| Script for T0278.t2k.near-backbone-11 coloring in rasmol | T0278.t2k.near-backbone-11-color.rasmol | 2004 Aug 13 19:37:20 |
| near-backbone-11---sequence logo (eps format) (pdf format) | T0278.t2k.near-backbone-11-logo | 2004 Aug 13 19:37:25 |
| str2 structure prediction (rdb format) (seq format) | T0278.t04.str2 | 2004 Aug 13 19:37:27 |
| Script for T0278.t04.str2 coloring in rasmol | T0278.t04.str2-color.rasmol | 2004 Aug 13 19:37:27 |
| str2---sequence logo (eps format) (pdf format) | T0278.t04.str2-logo | 2004 Aug 13 19:37:32 |
| stride-ebghtl structure prediction (rdb format) (seq format) | T0278.t04.stride-ebghtl | 2004 Aug 13 18:35:45 |
| Script for T0278.t04.stride-ebghtl coloring in rasmol | T0278.t04.stride-ebghtl-color.rasmol | 2004 Aug 13 19:37:33 |
| stride-ebghtl---sequence logo (eps format) (pdf format) | T0278.t04.stride-ebghtl-logo | 2004 Aug 13 19:37:36 |
| dssp-ebghstl structure prediction (rdb format) (seq format) | T0278.t04.dssp-ebghstl | 2004 Aug 13 19:37:39 |
| Script for T0278.t04.dssp-ebghstl coloring in rasmol | T0278.t04.dssp-ebghstl-color.rasmol | 2004 Aug 13 19:37:39 |
| dssp-ebghstl---sequence logo (eps format) (pdf format) | T0278.t04.dssp-ebghstl-logo | 2004 Aug 13 19:37:44 |
| alpha structure prediction (rdb format) (seq format) | T0278.t04.alpha | 2004 Aug 13 19:37:46 |
| Script for T0278.t04.alpha coloring in rasmol | T0278.t04.alpha-color.rasmol | 2004 Aug 13 19:37:46 |
| alpha---sequence logo (eps format) (pdf format) | T0278.t04.alpha-logo | 2004 Aug 13 19:37:51 |
| bys structure prediction (rdb format) (seq format) | T0278.t04.bys | 2004 Aug 13 19:37:54 |
| Script for T0278.t04.bys coloring in rasmol | T0278.t04.bys-color.rasmol | 2004 Aug 13 19:37:54 |
| bys---sequence logo (eps format) (pdf format) | T0278.t04.bys-logo | 2004 Aug 13 19:37:59 |
| dssp-ehl2 structure prediction (rdb format) (seq format) | T0278.t04.dssp-ehl2 | 2004 Aug 13 19:37:58 |
| Script for T0278.t04.dssp-ehl2 coloring in rasmol | T0278.t04.dssp-ehl2-color.rasmol | 2004 Aug 13 19:37:58 |
| dssp-ehl2---sequence logo (eps format) (pdf format) | T0278.t04.dssp-ehl2-logo | 2004 Aug 13 19:38:03 |
| CB_burial_14_7 structure prediction (rdb format) (seq format) | T0278.t04.CB_burial_14_7 | 2004 Aug 13 19:38:05 |
| Script for T0278.t04.CB_burial_14_7 coloring in rasmol | T0278.t04.CB_burial_14_7-color.rasmol | 2004 Aug 13 19:38:05 |
| CB_burial_14_7---sequence logo (eps format) (pdf format) | T0278.t04.CB_burial_14_7-logo | 2004 Aug 13 19:38:11 |
| near-backbone-11 structure prediction (rdb format) (seq format) | T0278.t04.near-backbone-11 | 2004 Aug 13 19:38:13 |
| Script for T0278.t04.near-backbone-11 coloring in rasmol | T0278.t04.near-backbone-11-color.rasmol | 2004 Aug 13 19:38:13 |
| near-backbone-11---sequence logo (eps format) (pdf format) | T0278.t04.near-backbone-11-logo | 2004 Aug 13 19:38:19 |
| Target model scores |
| amino acid single-track target model scores of PDB | T0278.t2k-w0.5-scores.html | 2004 Aug 13 19:43:56 |
| amino acid single-track target model scores of PDB | T0278.t04-w0.5-scores.html | 2004 Aug 13 19:49:07 |
| amino acid/100-30-str2 two-track target model scores | T0278.t2k-100-30-str2-scores.html | 2004 Aug 13 19:55:50 |
| amino acid/100-30-stride-ebghtl two-track target model scores | T0278.t2k-100-30-stride-ebghtl-scores.html | 2004 Aug 13 20:03:32 |
| amino acid/100-30-dssp-ebghstl two-track target model scores | T0278.t2k-100-30-dssp-ebghstl-scores.html | 2004 Aug 13 20:10:01 |
| amino acid/100-30-alpha two-track target model scores | T0278.t2k-100-30-alpha-scores.html | 2004 Aug 13 20:14:29 |
| amino acid/100-30-bys two-track target model scores | T0278.t2k-100-30-bys-scores.html | 2004 Aug 13 20:19:08 |
| amino acid/100-30-dssp-ehl2 two-track target model scores | T0278.t2k-100-30-dssp-ehl2-scores.html | 2004 Aug 13 20:25:00 |
| amino acid/100-30-CB_burial_14_7 two-track target model scores | T0278.t2k-100-30-CB_burial_14_7-scores.html | 2004 Aug 13 20:30:28 |
| amino acid/100-30-near-backbone-11 two-track target model scores | T0278.t2k-100-30-near-backbone-11-scores.html | 2004 Aug 13 20:35:13 |
| amino acid/100-40-40-str2+CB_burial_14_7 two-track target model scores | T0278.t2k-100-40-40-str2+CB_burial_14_7-scores.html | 2004 Aug 13 20:40:22 |
| amino acid/100-30-str2 two-track target model scores | T0278.t04-100-30-str2-scores.html | 2004 Aug 13 20:43:24 |
| amino acid/100-30-stride-ebghtl two-track target model scores | T0278.t04-100-30-stride-ebghtl-scores.html | 2004 Aug 13 20:46:27 |
| amino acid/100-30-dssp-ebghstl two-track target model scores | T0278.t04-100-30-dssp-ebghstl-scores.html | 2004 Aug 13 20:50:23 |
| amino acid/100-30-alpha two-track target model scores | T0278.t04-100-30-alpha-scores.html | 2004 Aug 13 20:56:17 |
| amino acid/100-30-bys two-track target model scores | T0278.t04-100-30-bys-scores.html | 2004 Aug 13 21:00:30 |
| amino acid/100-30-dssp-ehl2 two-track target model scores | T0278.t04-100-30-dssp-ehl2-scores.html | 2004 Aug 13 21:03:30 |
| amino acid/100-30-CB_burial_14_7 two-track target model scores | T0278.t04-100-30-CB_burial_14_7-scores.html | 2004 Aug 13 21:06:33 |
| amino acid/100-30-near-backbone-11 two-track target model scores | T0278.t04-100-30-near-backbone-11-scores.html | 2004 Aug 13 21:09:38 |
| amino acid/100-40-40-str2+CB_burial_14_7 two-track target model scores | T0278.t04-100-40-40-str2+CB_burial_14_7-scores.html | 2004 Aug 13 21:13:02 |
| Template model scores |
| Annotated template model scores | T0278.template-lib-scores.html | 2004 Aug 13 21:17:56 |
| Top Hits |
| Best scoring hits from all models | T0278.t2k.best-scores.html | 2004 Aug 13 21:17:57 |
| Alignments for Top Hits |
| T02 Many Alignments Summary | T0278.t2k.many_alignments.html | 2004 Aug 13 23:18:30 |
| T02 Top Models Summary | T0278.t2k.top_reported_alignments.html | 2004 Aug 13 23:19:06 |
| multiple alignment of templates (a2m.gz format) (pa format) | all-align | 2004 Aug 13 23:19:15 |
| Undertaker (3d) files |
| Multiple alignment for undertaker templates | T0278.t2k-2track-undertaker.a2m | 2004 Aug 13 23:21:31 |
| Undertaker input for top alignments | T0278.t2k.undertaker-align.under | 2004 Aug 13 23:21:31 |
| PDB file with model(s) for top alignments | T0278.t2k.undertaker-align.pdb.gz | 2004 Aug 13 23:25:11 |
| Fragment list for undertaker (from fragfinder) | T0278.t04.many.frag.gz | 2004 Aug 13 23:26:21 |
| Fragment list for undertaker (from fragfinder) | T0278.t2k.many.frag.gz | 2004 Aug 13 23:27:30 |
| First attempted model using undertaker | decoys/T0278.try1-opt2.pdb.gz | 2004 Aug 14 7:10:23 |
| Significant mutual information between column pairs |