Best Alignments for T0278

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1tqnA/T0278-1tqnA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1tqnA/T0278-1tqnA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 7.8422e-451.4474e-69
1nr6A/T0278-1nr6A-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1nr6A/T0278-1nr6A-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 6.2191e-425.0150e-66 a.104.1.1
1po5A/T0278-1po5A-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1po5A/T0278-1po5A-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 5.5246e-414.3296e-63 a.104.1.1
1bu7A/T0278-1bu7A-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1bu7A/T0278-1bu7A-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 1.2582e-398.1140e-61 1bu7A a.104.1.1
1jpzA/T0278-1jpzA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1jpzA/T0278-1jpzA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 2.0579e-392.4176e-60 a.104.1.1
1w0fA/T0278-1w0fA-t04-global-adpstyle1.a2m 1w0fA/T0278-1w0fA-t04-global-adpstyle1.al 3.5578e-392.1282e-53
1n97A/T0278-1n97A-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1n97A/T0278-1n97A-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 6.1713e-392.8100e-58 a.104.1.1
1dt6A/T0278-1dt6A-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1dt6A/T0278-1dt6A-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 6.3554e-396.8206e-63 1dt6A a.104.1.1
1jmeA/T0278-1jmeA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1jmeA/T0278-1jmeA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 1.9017e-381.8535e-59 a.104.1.1
1n6bA/T0278-1n6bA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1n6bA/T0278-1n6bA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 4.9900e-382.0145e-62 a.104.1.1
1eupA/T0278-1eupA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1eupA/T0278-1eupA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 1.2367e-362.2708e-55 1rom a.104.1.1
1u13A/T0278-1u13A-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1u13A/T0278-1u13A-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 4.7693e-364.4317e-54
1h5zA/T0278-1h5zA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1h5zA/T0278-1h5zA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 5.9458e-368.7307e-54 a.104.1.1
1jipA/T0278-1jipA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1jipA/T0278-1jipA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 8.1623e-365.0393e-55 a.104.1.1
1gwiA/T0278-1gwiA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1gwiA/T0278-1gwiA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 8.6438e-361.6281e-53 a.104.1.1
1odoA/T0278-1odoA-t2k-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.a2m 1odoA/T0278-1odoA-t2k-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.al 3.7045e-359.9367e-102 a.104.1.1
1oxa/T0278-1oxa-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1oxa/T0278-1oxa-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 5.5229e-341.3741e-53 1f4tA a.104.1.1
1uedA/T0278-1uedA-t2k-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.a2m 1uedA/T0278-1uedA-t2k-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.al 1.9303e-332.0537e-80 a.104.1.1
1cpt/T0278-1cpt-t2k-local-str2+CB_burial_14_7-2.2+1.8-adpstyle5.a2m 1cpt/T0278-1cpt-t2k-local-str2+CB_burial_14_7-2.2+1.8-adpstyle5.al 2.0088e-332.7696e-100 1cpt a.104.1.1
1jfbA/T0278-1jfbA-t2k-local-str2+CB_burial_14_7-2.2+1.8-adpstyle5.a2m 1jfbA/T0278-1jfbA-t2k-local-str2+CB_burial_14_7-2.2+1.8-adpstyle5.al 2.8070e-333.6602e-100 a.104.1.1
1e9xA/T0278-1e9xA-t2k-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.a2m 1e9xA/T0278-1e9xA-t2k-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.al 3.1464e-331.6231e-81 1ea1A a.104.1.1
1q5dA/T0278-1q5dA-t2k-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.a2m 1q5dA/T0278-1q5dA-t2k-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.al 4.4155e-331.7086e-81 a.104.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001