track IAMA superTrack on show shortLabel IAMA data longLabel A super-track of: Isoforms, Gene Expression, Smart-seq2, and R2C2 reads priority 10000 track Mandalorion_Isoforms parent IAMA bigDataUrl Mandalorion_isoforms/Isoform_corrected_hq_expression.sorted.bam shortLabel Mandalorion isoforms longLabel Isoforms determined by Mandalorion from R2C2 reads showNames off type bam priority 101 visibility full track NoStim_Rep1_R2C2 parent IAMA bigDataUrl R2C2_reads/NoStim_Rep3.sorted.bam shortLabel NoStim Rep1 R2C2 longLabel NoStim Rep1 R2C2 read alignment type bam visibility squish bamColorMode gray priority 104 track NoStim_Rep2_R2C2 parent IAMA bigDataUrl R2C2_reads/NoStim_Rep5.sorted.bam shortLabel NoStim Rep2 R2C2 longLabel NoStim Rep2 R2C2 read alignment type bam priority 106 visibility squish bamColorMode gray track LPS_Rep1_R2C2 parent IAMA bigDataUrl R2C2_reads/LPS_Rep3.sorted.bam shortLabel LPS Rep1 R2C2 longLabel LPS Rep1 R2C2 read alignment type bam priority 108 visibility squish bamColorMode gray track LPS_Rep2_R2C2 parent IAMA bigDataUrl R2C2_reads/LPS_Rep5.sorted.bam shortLabel LPS Rep2 R2C2 longLabel LPS Rep2 R2C2 read alignment type bam priority 110 visibility squish bamColorMode gray track PAM_Rep1_R2C2 parent IAMA bigDataUrl R2C2_reads/PAM_Rep3.sorted.bam shortLabel PAM Rep1 R2C2 longLabel PAM Rep1 R2C2 read alignment type bam priority 112 visibility squish bamColorMode gray track PAM_Rep2_R2C2 parent IAMA bigDataUrl R2C2_reads/PAM_Rep5.sorted.bam shortLabel PAM Rep2 R2C2 longLabel PAM Rep2 R2C2 read alignment type bam priority 114 visibility squish bamColorMode gray track R848_Rep1_R2C2 parent IAMA bigDataUrl R2C2_reads/R_Rep3.sorted.bam shortLabel R848 Rep1 R2C2 longLabel R848 Rep1 R2C2 read alignment type bam priority 116 visibility squish bamColorMode gray track R848_Rep2_R2C2 parent IAMA bigDataUrl R2C2_reads/R_Rep5.sorted.bam shortLabel R848 Rep2 R2C2 longLabel R848 Rep2 R2C2 read alignment type bam priority 118 visibility squish bamColorMode gray track PolyI:C_Rep1_R2C2 parent IAMA bigDataUrl R2C2_reads/PolyI_Rep3.sorted.bam shortLabel PolyI:C Rep1 R2C2 longLabel PolyI:C Rep1 R2C2 read alignment type bam priority 120 visibility squish bamColorMode gray track PolyI:C_Rep2_R2C2 parent IAMA bigDataUrl R2C2_reads/PolyI_Rep5.sorted.bam shortLabel PolyI:C Rep2 R2C2 longLabel PolyI:C Rep2 R2C2 read alignment type bam priority 122 visibility squish bamColorMode gray track Gene_expression parent IAMA bigDataUrl Gene_expression/Gene_Expression_bar_chart.sorted.bb shortLabel Gene expression longLabel Gene expression type bigBarChart barChartBars NoStim_Rep1 NoStim_Rep2 LPS_Rep1 LPS_Rep2 PAM_Rep1 PAM_Rep2 R848_Rep1 R848_Rep2 PolyI:C_Rep1 PolyI:C_Rep2 barChartColors #000000 #000000 #145abe #145abe #f4b054 #f4b054 #808080 #808080 #198c78 #198c78 visibility pack priority 102 track NoStim_Rep1_SS2 parent IAMA bigDataUrl Illumina_reads/NoStim_Rep3.bam shortLabel NoStim Rep1 SS2 longLabel NoStim Rep1 Illumina Smart-seq2 read alignment type bam doWiggle on visibility full priority 103 bamColorMode gray track NoStim_Rep2_SS2 parent IAMA bigDataUrl Illumina_reads/NoStim_Rep5.bam shortLabel NoStim Rep2 SS2 longLabel NoStim Rep2 Illumina Smart-seq2 read alignment type bam doWiggle on visibility full priority 105 bamColorMode gray track LPS_Rep1_SS2 parent IAMA bigDataUrl Illumina_reads/LPS_Rep3.bam shortLabel LPS Rep1 SS2 longLabel LPS Rep1 Illumina Smart-seq2 read alignment type bam doWiggle on visibility full priority 107 bamColorMode gray track LPS_Rep2_SS2 parent IAMA bigDataUrl Illumina_reads/LPS_Rep5.bam shortLabel LPS Rep2 SS2 longLabel LPS Rep2 Illumina Smart-seq2 read alignment type bam doWiggle on visibility full priority 109 bamColorMode gray track PAM_Rep1_SS2 parent IAMA bigDataUrl Illumina_reads/PAM_Rep3.bam shortLabel PAM Rep1 SS2 longLabel PAM Rep1 Illumina Smart-seq2 read alignment type bam doWiggle on visibility full priority 111 bamColorMode gray track PAM_Rep2_SS2 parent IAMA bigDataUrl Illumina_reads/PAM_Rep5.bam shortLabel PAM Rep2 SS2 longLabel PAM Rep2 Illumina Smart-seq2 read alignment type bam doWiggle on visibility full priority 113 bamColorMode gray track R848_Rep1_SS2 parent IAMA bigDataUrl Illumina_reads/R_Rep3.bam shortLabel R848 Rep1 SS2 longLabel R848 Rep1 Illumina Smart-seq2 read alignment type bam doWiggle on visibility full priority 115 bamColorMode gray track R848_Rep2_SS2 parent IAMA bigDataUrl Illumina_reads/R_Rep5.bam shortLabel R848 Rep2 SS2 longLabel R848 Rep2 Illumina Smart-seq2 read alignment type bam doWiggle on visibility full priority 117 bamColorMode gray track PolyI:C_Rep1_SS2 parent IAMA bigDataUrl Illumina_reads/PolyI_Rep3.bam shortLabel PolyI:C Rep1 SS2 longLabel PolyI:C Rep1 Illumina Smart-seq2 read alignment type bam doWiggle on visibility full priority 119 bamColorMode gray track PolyI:C_Rep2_SS2 parent IAMA bigDataUrl Illumina_reads/PolyI_Rep5.bam shortLabel PolyI:C Rep2 SS2 longLabel PolyI:C Rep2 Illumina Smart-seq2 read alignment type bam doWiggle on visibility full priority 121 bamColorMode gray