Index of /~vollmers

Icon  Name                    Last modified      Size  Description
[   ] valid.sorted.bam.bai    2022-09-27 21:42  1.6M  
[CMP] valid.sorted.bam        2022-09-27 21:42   22M  
[   ] test.sorted.bam.bai     2022-08-02 18:04   84K  
[CMP] test.sorted.bam         2022-08-02 18:04   48M  
[   ] swine1toRef.bam.bai     2022-10-10 11:28  1.3M  
[CMP] swine1toRef.bam         2022-10-10 11:28  1.2G  
[   ] soy.sorted.bam.bai      2021-08-13 11:01  947K  
[CMP] soy.sorted.bam          2021-08-13 11:00  218M  
[   ] rhesusGentoRef_noSec..> 2022-08-24 10:47  1.5M  
[CMP] rhesusGentoRef_noSec..> 2022-08-24 10:47  1.5G  
[   ] rhesusGentoRef.paf      2022-08-23 10:40   20M  
[   ] rhesusGentoRef.bam.bai  2022-08-23 16:43  1.5M  
[CMP] rhesusGentoRef.bam      2022-08-23 16:43  1.5G  
[   ] rhe1igM.subsampled.s..> 2022-08-02 15:38  129K  
[CMP] rhe1igM.subsampled.s..> 2022-08-02 15:38  346K  
[   ] rhe1igM.sorted.bam.bai  2022-08-01 16:01  286K  
[CMP] rhe1igM.sorted.bam      2022-08-01 16:01  2.9M  
[   ] rhe1igM.Q25.subsampl..> 2022-08-03 09:24  129K  
[CMP] rhe1igM.Q25.subsampl..> 2022-08-03 09:24  346K  
[   ] rhe1igM.Q25.sorted.b..> 2022-08-03 09:19  286K  
[CMP] rhe1igM.Q25.sorted.bam  2022-08-03 09:19  2.9M  
[   ] ragtag.scaffold.sort..> 2022-08-01 14:36  1.6M  
[CMP] ragtag.scaffold.sort..> 2022-08-01 14:36  1.1G  
[   ] racon.combined.sorte..> 2021-07-28 17:49  1.2M  
[CMP] racon.combined.sorte..> 2021-07-28 17:49  1.0M  
[   ] mmcdnaIGH.bam.bai       2020-07-22 14:12   56K  
[CMP] mmcdnaIGH.bam           2020-07-22 14:12  5.2K  
[   ] mm2Alignments.clean.psl 2022-04-06 20:12  5.4G  
[   ] miniasmsorted.bam.bai   2022-01-22 18:10  1.2M  
[CMP] miniasmsorted.bam       2022-01-22 18:10  8.9M  
[   ] merge_output.vcf.gz     2021-09-16 10:27   81K  
[TXT] merge_output.vcf        2021-09-16 13:02   32K  
[   ] mandalorion.gtf         2020-12-28 17:24   50M  
[   ] invalid.sorted.bam.bai  2022-09-27 21:42  1.5M  
[CMP] invalid.sorted.bam      2022-09-27 21:42  5.2M  
[DIR] hubtest/                2020-07-03 11:48    -   
[   ] hifiasmIGH.bam.bai      2020-07-21 13:53   58K  
[CMP] hifiasmIGH.bam          2020-07-21 13:53  1.9M  
[   ] gencode.sorted.bam.bai  2020-12-28 15:22  1.5M  
[CMP] gencode.sorted.bam      2020-12-28 15:22   13M  
[   ] flye.sorted.bam.bai     2022-01-26 19:11  1.3M  
[CMP] flye.sorted.bam         2022-01-26 19:11   18M  
[   ] filtered_reads.sorte..> 2022-01-31 21:14  1.5M  
[CMP] filtered_reads.sorte..> 2022-01-31 21:14  490M  
[   ] filtered_reads.minia..> 2022-01-30 19:11  720K  
[CMP] filtered_reads.minia..> 2022-01-30 19:11  456K  
[   ] enriched.sorted.bam.bai 2020-02-16 13:21  1.3M  
[CMP] enriched.sorted.bam     2020-02-16 13:21  2.7M  
[   ] dbg.raw.sorted.bam.bai  2022-01-26 16:44  1.2M  
[CMP] dbg.raw.sorted.bam      2022-01-26 16:44  3.4M  
[   ] cow1genometoUCSCRef_..> 2022-06-21 11:12  1.4M  
[CMP] cow1genometoUCSCRef_..> 2022-06-21 11:12  1.1G  
[   ] canualn_sorted.bam.bai  2020-07-20 18:09   56K  
[CMP] canualn_sorted.bam      2020-07-20 18:09  743K  
[DIR] bootcamp_data/          2019-08-23 11:44    -   
[   ] bigPsl.indels.bb        2023-05-20 17:45   22M  
[   ] bigPsl.bb               2023-05-20 16:11   21M  
[   ] assembly.sorted.bam.bai 2022-08-01 14:26  1.5M  
[CMP] assembly.sorted.bam     2022-08-01 14:26  1.4G  
[   ] assembly.secondary.s..> 2022-08-02 16:10  1.5M  
[CMP] assembly.secondary.s..> 2022-08-02 16:10  1.4G  
[DIR] TAMI/                   2023-05-21 06:30    -   
[   ] StarTestAligned.out...> 2022-03-12 20:41  2.4M  
[CMP] StarTestAligned.out...> 2022-03-12 20:41  1.2G  
[   ] Sizeselected.sorted...> 2021-11-30 13:10  2.4M  
[CMP] Sizeselected.sorted.bam 2021-11-30 13:10  856M  
[   ] Sample3.sorted.bam.bai  2022-03-04 22:37  2.2M  
[CMP] Sample3.sorted.bam      2022-03-04 22:37  6.5M  
[   ] Sample2.trimmed.noSo..> 2021-09-20 16:02  4.0M  
[CMP] Sample2.trimmed.noSo..> 2021-09-20 16:02  138M  
[   ] Sample2.sorted.bam.bai  2022-03-04 22:37  3.0M  
[CMP] Sample2.sorted.bam      2022-03-04 22:37   13M  
[TXT] Sample2.clair3.vcf      2021-09-17 16:19   38K  
[TXT] Sample1_clair3.vcf      2021-09-17 16:18   32K  
[CMP] Sample1.trimmed.q.so..> 2021-09-19 12:47  343M  
[   ] Sample1.trimmed.q.no..> 2021-09-19 18:20  3.2M  
[CMP] Sample1.trimmed.q.no..> 2021-09-19 18:20  285M  
[   ] Sample1.trimmed.noSo..> 2021-09-20 16:02  3.2M  
[CMP] Sample1.trimmed.noSo..> 2021-09-20 16:02  285M  
[   ] Sample1.sorted.bam.bai  2022-03-04 22:37  2.8M  
[CMP] Sample1.sorted.bam      2022-03-04 22:37   13M  
[CMP] Sample.sorted.bam       2022-03-04 20:07  3.9M  
[   ] SS.bed                  2022-04-06 20:07   16M  
[   ] R2C2_full_length_con..> 2022-01-12 15:43  794K  
[CMP] R2C2_full_length_con..> 2022-01-12 15:43  575M  
[   ] R2C2_full_length_con..> 2022-07-29 13:16  2.5M  
[CMP] R2C2_full_length_con..> 2022-07-29 13:16  1.7G  
[   ] R2C2_full_length_con..> 2022-01-14 15:08  124K  
[CMP] R2C2_full_length_con..> 2022-01-14 15:08  803K  
[   ] R2C2_full_length_con..> 2022-11-10 20:04  1.5M  
[CMP] R2C2_full_length_con..> 2022-11-10 20:04   16M  
[   ] R2C2_full_length_con..> 2022-03-14 17:25  1.5M  
[CMP] R2C2_full_length_con..> 2022-03-14 17:25   11M  
[   ] R2C2_A549Aligned.out..> 2021-09-13 18:56  2.2M  
[CMP] R2C2_A549Aligned.out..> 2021-09-13 18:56  865M  
[DIR] PBMC_data/              2019-12-14 14:46    -   
[   ] PB.bam.bai              2020-04-19 14:00  1.5M  
[CMP] PB.bam                  2020-04-19 14:00   35M  
[DIR] MPs/                    2020-02-24 12:55    -   
[DIR] MAIA/                   2020-07-02 17:16    -   
[DIR] Jolene/                 2020-04-25 23:17    -   
[   ] Isoforms.filtered.cl..> 2022-04-06 20:05   32M  
[   ] Isoforms.aligned.out..> 2021-11-18 15:14   41M  
[   ] Illumina_rep2_reads...> 2021-11-06 10:20  583M  
[   ] Illumina_rep1_reads...> 2021-11-06 10:18  561M  
[   ] IBWN_Vollmers.pdf       2021-10-28 20:33  1.8M  
[TXT] DESeq2_script.R         2020-04-25 23:10  1.8K  
[   ] COPD_subsampled1.bam..> 2020-07-23 14:29  1.4M  
[CMP] COPD_subsampled1.bam    2020-07-23 14:29  3.9M  
[   ] COPD_subsampled.bam.bai 2020-07-23 14:10  1.4M  
[CMP] COPD_subsampled.bam     2020-07-23 14:10  4.0M  
[   ] COPD_R2C2_reads.sort..> 2020-07-23 14:08  1.4M  
[CMP] COPD_R2C2_reads.sort..> 2020-07-23 14:08  4.0M  
[   ] COPD_R2C2_Data.tar.gz   2020-07-02 11:05  335M  
[DIR] Apple_MA_R2C2_tracks/   2020-07-02 17:00    -   
[DIR] Apple_MA_Illumina_tr..> 2020-07-02 17:00    -   
[   ] Allele2.bam.bai         2019-08-21 10:48  631K  
[CMP] Allele2.bam             2019-08-21 10:57   31K  
[   ] Allele1.bam.bai         2019-08-21 10:48  754K  
[CMP] Allele1.bam             2019-08-21 10:48   37K  
[   ] 21.sorted.bam.bai       2022-01-27 18:20  279K  
[CMP] 21.sorted.bam           2022-01-27 18:20  708K  
[   ] 1D_combined.sorted.b..> 2022-03-06 11:53  2.6M  
[CMP] 1D_combined.sorted.bam  2022-03-06 11:53  4.3G  
[   ] 11181.sorted.bam.bai    2022-01-31 20:44  123K  
[CMP] 11181.sorted.bam        2022-01-31 20:44   38K  
[   ] 11169.sorted.bam.bai    2022-01-30 20:57   30K  
[CMP] 11169.sorted.bam        2022-01-30 20:57   15K  
[DIR] 10XR2C2/                2020-01-08 17:51    -   
[   ] 1.sorted.bam.bai        2022-01-27 16:32  274K  
[CMP] 1.sorted.bam            2022-01-27 16:32  131K
Apache/2.4.6 (CentOS) Server at users.soe.ucsc.edu Port 443