Lectures notes (or do I mean figures?)
• 1/13/15:
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• 1/15/15:
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• 1/20/15:
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• 1/22/15:
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• 1/27/15:
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Milo, Shen-Orr, Itzkovitz, Kashtan, Chklovskii, Alon. Network Motifs: Simple Building Blocks of Complex Networks
Kashtan, Itzkovitz, Milo, Alon. Efficient sampling algorithm for estimating
subgraph concentrations and detecting
network motifs
Alon, Dao, Hajirasouliha, Hormozdiari, Cenk Sahinalp. Biomolecular network motif counting and discovery by color coding
• 1/29/15:
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Wernicke. Efficient detection of network motifs
Grochow, Kellis. Network motif discovery using subgraph enumeration and symmetry-breaking
• 2/3/15:
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Chiba, Nishizeki. Arboricity and subgraph listing algorithms
Jha, Seshadhri, Pinar. Path Sampling: A Fast and Provable Method for Estimating 4-Vertex Subgraph Counts
• 2/5/15:
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• 2/10/15:
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• 2/12/15:
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Notes of chordal graphs: IIT Delhi Binghamton
• 2/17/15:
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Rossi, Gleich, Gebremedhin, Patwary. Parallel Maximum Clique Algorithms with Applications to Network Analysis and Storage
Datasets
• SNAP Graphs
• KONECT
• Laboratory for Web Algorithmics
• Wormnet: Protein interaction networks
• Challenge graphs:
coexpression experimental textmining
Code
• My python code: https://github.com/csesha/patterns-in-python.git
• NetworkX: http://networkx.github.io/
Assignments
• Assignment 1:
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