Lectures notes (or do I mean figures?)

• 1/13/15: Board1 Board2 Board3 Board4 Board5 Board6 Board7
• 1/15/15: Board1 Board2 Board3 Board4 Board5
• 1/20/15: Board1 Board2 Board3 Board4 Board5
• 1/22/15: Board1 Board2 Board3 Board4 Board5 Board6
• 1/27/15: Board1 Board2 Board3 Board4
   Milo, Shen-Orr, Itzkovitz, Kashtan, Chklovskii, Alon. Network Motifs: Simple Building Blocks of Complex Networks
   Kashtan, Itzkovitz, Milo, Alon. Efficient sampling algorithm for estimating subgraph concentrations and detecting network motifs
   Alon, Dao, Hajirasouliha, Hormozdiari, Cenk Sahinalp. Biomolecular network motif counting and discovery by color coding

• 1/29/15: Board1 Board2 Board3
   Wernicke. Efficient detection of network motifs
  Grochow, Kellis. Network motif discovery using subgraph enumeration and symmetry-breaking

• 2/3/15: Board1 Board2 Board3 Board4 Board5 Board6 Board7 Board8
   Chiba, Nishizeki. Arboricity and subgraph listing algorithms
   Jha, Seshadhri, Pinar. Path Sampling: A Fast and Provable Method for Estimating 4-Vertex Subgraph Counts

• 2/5/15: Board1 Board2 Board3
• 2/10/15: Board1 Board2 Board3 Board4
• 2/12/15: Board1 Board2 Board3 Board4
   Notes of chordal graphs: IIT Delhi     Binghamton
• 2/17/15: Board1 Board2 Board3 Board4
   Rossi, Gleich, Gebremedhin, Patwary. Parallel Maximum Clique Algorithms with Applications to Network Analysis and Storage


SNAP Graphs
Laboratory for Web Algorithmics
Wormnet: Protein interaction networks
• Challenge graphs:
    coexpression experimental textmining


• My python code: https://github.com/csesha/patterns-in-python.git
• NetworkX: http://networkx.github.io/


• Assignment 1: Page1 Page2 Page3