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  UCSC Genome Browser Project Team
  Center for Biomolecular Science and Engineering (CBSE) Staff:

UCSC Genome Browser Project Staff:

  • Jim Kent: Research Scientist, Co-director of UCSC Genome Browser project. Design and implementation of the Genome Browser and the BLAT sequence search tool. Author of the GigAssembler program and Family Browser. Implementation of many Genome Browser annotation track, including FPC contigs, assembly, gap, coverage, known genes, full mRNA, spliced ESTs, human ESTs, Genscan genes, non-human mRNA and EST, and mouse BLAT.
  • Fan Hsu: Research Scientist, Director of Proteomics. Mouse Genome Browser, proteomics initiative, Known Genes track.
  • Hiram Clawson: Genome Browser engineering, Worm Browser, "wiggle" track for quantitative analysis along chromosomes, mirror and licensing technical support.
  • Mark Diekhans: Graduate student, MGC project lead, mouse homology reference sequence and phylogenetic analysis, incremental updates of cDNA data.
  • Terry Furey: Post-doctoral fellow - Clone map analysis, STS browser tracks and STS analysis (genetic, RH, FISH and YAC maps), BACend, cytogenetic band and GC-content browser tracks.
  • Rachel Harte: Genome Browser engineering.
  • Angie Hinrichs: Genome Browser engineering, Drosophila Browser, Chicken Browser, Table Browser.
  • Donna Karolchik: Documentation, web content, Genome Browser licensing, mailing list support, misc. project/staff management.
  • Robert Kuhn: Genome Browser QA, project outreach.
  • Thomas Pringle: Technical advisor on Proteome Browser project, avid Genome Browser user, constant source of ideas for improving and expanding project functionality.
  • Brian Raney: Graduate student, Ciona Browser, Genome Browser engineering.
  • Kate Rosenbloom: Genome Browser engineering, Fugu Browser, Chimp Browser, NISC project, ENCODE project, multiz/humor alignments.
  • Heather Trumbower: Genome Browser Project Manager, QA manager.

Post-docs and Graduate Students (Browser-related support):

  • Robert Baertsch: Graduate student - Synteny, pseudogenes, orthology; Genome Browser support.
  • Gill Bejerano: Post-doctoral fellow - Genome Browser support, comparative genomics research.
  • Chad Chen: Graduate student - pathway visualization.
  • Yontao Lu: Graduate student - Help with genetic maps.
  • Katie Pollard: Post-doctoral fellow - Chimp genome analysis.
  • Krishna Roskin: Graduate student - Phylogenetic analysis, Genome Browser database support, early Table Browser support.
  • Adam Siepel: Graduate student - General Genome Browser support, multi-species conservation score annotation tracks.
  • Chuck Sugnet: Graduate student - Integration of functional genomics data, annotation lifting from one freeze to another, SAGE/UniGene track, general Genome Browser support.
  • Daryl Thomas: Graduate student - SNP tracks, haplotype tracks in collaboration with Ryan Weber and Chuck Sugnet, alignments for ENCODE project.
  • Ryan Weber: Graduate student - Mouse and Human Conservation tracks, general Genome Browser and map support.

Systems Administration Staff:

  • Jorge Garcia: Co-design of the KiloKluster. Chief hardware bug finder. Web, mail, laptop and general systems support.
  • Patrick Gavin: Hardware, KiloKluster design, general systems support.
  • Paul Tatarsky: Hardware, networking, security, mirror sites, general advice.

We gratefully acknowledge the help of former UCSC genome team members Mathieu Blanchette, Trevor Bruen, Jenny Draper, Maria Guarino, Scot Kennedy, Nick Littlestone, Sanja Rogic, Matt Schwartz, Aaron Tomb, Wei Wu, Matt Xia, Degui Zhi.