This track displays alignments of $o_organism to $organism using the Wobble Aware Bulk Aligner (WABA), an alignment tool developed by Jim Kent for doing large-scale alignments between genomic DNA of different species.
The symbols shown below the base alignments on the details page indicate the hidden Markov model states for those bases:
The WABA alignment algorithm is described in Kent, WJ and Zahler, AM (2000). "Conservation, Regulation, Synteny, and Introns in a Large-scale C. briggsae-C. elegans Genomic Alignment", Genome Res 10(8):1115-1125.
WABA was developed by Jim Kent and Alan M. Zahler.
$O_organism version cb25.agp8 (11 July 2002) and $organism version WS100 (02 May 2003) were used in creating this annotation. Thanks to WormBase and Lincoln Stein.
The data for the $organism browser display were collected by Hiram Clawson). Please contact him with questions or comments about this annotation.