Description

This track contains alignments of predicted transcripts from the DOE Joint Genome Institute (JGI) to the $organism genome.

Methods

Predicted peptides from JGI were aligned to their predicted transcripts using the Blat program to establish the coding portion of the transcript. The transcripts were then aligned to the $organism genome using Blat. For more information about this assembly and an analysis of the euchromatic regions of the genome, see Dehal et al., The Draft Genome of Ciona intestinalis: Insights into Chordate and Vertebrate Origins. Science. 2002 Dec 13;298(5601):2157-67.

Credits

The $organism predicted transcripts and peptides were provided by JGI. Blat was written by Jim Kent.