The 13 Nov. 2003 chimpanzee (Pan troglodytes) Arachne assembly -- NCBI Build 1 Version 1 -- was produced by the Chimpanzee Genome Sequencing Consortium.
A genome position can be specified by the HUGO gene name of a human RefSeq, the accession number of a mRNA or EST, a chromosomal coordinate range, a scaffold (supercontig) coordinate range, or keywords from the GenBank description of an mRNA. The following list shows examples of valid position queries for the chimpanzee genome. See the User's Guide for more information.
Request: |
Genome Browser Response: |
|
chr23 | Displays all of chromosome 23 | |
chr6:118,000,000-119,000,000 | Displays a million bases of chromosome 6, beginning at 118 million bases offset from p arm telomere | |
scaffold_1:1-1000000 | Displays first million bases of genome positioned at scaffold 1 of the assembly | |
BRCA1 | Displays region of genome where human RefSeq gene BRCA1 aligns | |
AF115459 | Displays region of genome with mRNA with GenBank accession number AF115459 | |
348 | Displays the region of genome with LocusLink identifier 348 | |
pseudogene mRNA | Lists transcribed pseudogenes, but not cDNAs | |
sialic acid | Lists mRNAs and RefSeqs with sialic acid in the GenBank keywords | |
huntington | Lists mRNAs associated with Huntington's disease | |
Paabo,S. | Lists mRNAs deposited by co-author S. Paabo | |
Use this last format for author queries. Although GenBank requires the search format Paabo S, internally it uses the format Paabo,S.. |
Background information on the chimp genome sequencing project and the initial news release about the chimp assembly can be found on the NHGRI website. For more information about the assembly process used for this draft genome, see the Genome Browser Assembly track details page. To view a chromosome correspondence table between chimp and human chromosomes, click here.
Bulk downloads of the sequence and annotation data are available via the Genome Browser FTP server or the Downloads page. The complete set of sequence reads is available at the NCBI trace archive. The chimpanzee browser annotation tracks were generated by UCSC and collaborators worldwide. See the Credits page for a detailed list of the organizations and individuals who contributed to the success of this release and conditions for use of the data.
Blat searches on chrUn_random are not supported at the current time, but will be available soon.