This track displays multiz multiple alignments of seven species of the genus Saccharomyces. The graphic display shows the alignment projected onto S. cerevisiae. Click on the alignment to see the full alignment including sequence not in S. cerevisiae.
The genomes were downloaded from:
A C G T A 91 -114 -31 -123 C -114 100 -125 -31 G -31 -125 100 -114 T -123 -31 -114 91 O = 400, E = 30, K = 3000, L = 3000, M = 50The overall score is the sum of the score over all pairs.
The multiz program was created by Webb Miller of the Penn State Bioinformatics Group. Jim Kent at UCSC wrote axtBest and the scripts to run multiz genome-wide and to display the alignments in this browser. Sequence data were provided by Washington University and the Eli & Edythe L. Broad Institute at MIT/Harvard.
Aligning Multiple Genomic Sequences with the Threaded Blockset Aligner. Blanchette M, Kent WJ, Riemer C, Elnitski L, Smit AFA, Roskin KM, Baertsch R, Rosenbloom K, Clawson H, Green ED, Haussler D, Miller W. Submitted for publication.
Human-Mouse Alignments with BLASTZ. Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison R, Haussler H, and Miller W. Genome Research 2003 Jan;13(1):103-7.
Scoring pairwise genomic sequence alignments. Chiaromonte F, Yap VB, Miller W. Pac Symp Biocomput 2002;:115-26.