Description
The $organism
Mammalian Gene Collection
full ORF mRNA track shows alignments between
$organism MGC mRNAs with full-length ORFs and the genome.
Coding exons are displayed
taller than 5' and 3' untranslated regions (UTR). Connecting introns
are one-pixel lines with hatch marks indicating direction of transcription.
Method
Genbank $organism MGC mRNAs identified as having full-length ORFs are
aligned against the genome using the BLAT program. When a single mRNA aligns
in multiple places, the alignment having the highest base identity is found.
Only alignments that have a base identity level within 1% of
the best are kept. Alignments must also have at least 95%
base identity to be kept.
Credits
The $Organism MGC full-length mRNA track is produced at UCSC from mRNA sequence data
submitted to
Genbank
by the
Mammalian Gene Collection project.