This track displays translated alignments of 728 million bases of Tetraodon nigroviridis whole genome shotgun reads vs. the draft $organism genome. Areas painted by this track are quite likely to be coding regions.
The alignments were done with BLAT in translated protein mode requiring 2 nearby 4-mer matches to trigger a detailed alignment. The human genome was masked with RepeatMasker and Tandem Repeat Finder before running BLAT.
Many thanks to Genoscope for providing the Tetraodon sequence.