Description
This track displays translated BLAT alignments of
non-$organism vertebrate ESTs from Genbank.
Method
To generate this track, the ESTs are aligned against the genome using the BLAT
program. The alignments are passed through a piecewise near-best-in-genome
filter.
Using the Filter
The track filter can be used to change the color or include/exclude a subset of
individual items within a track. This is helpful when many items are shown in the
track display, especially when only some are relevant to the current task. To use the
filter:
- Enter a value in one or more of the text boxes to filter the EST display. For
example, to apply the filter to all ESTs expressed in the liver, type "liver" in the
tissue box. For a list of permissible filter values, consult the non-positional table in
the Table Browser that corresponds to the factor on which you wish to filter. For
example, the non-positional table "tissue" contains all of the types of tissues
that can be entered into the tissue text box. Wildcards can also be used in the
filter.
- If filtering on more than one value, choose the desired combination
logic. If "and" is selected, only ESTs that match all of the filter criteria will
be highlighted. If "or" is selected, ESTs that match any 1 of the filter criteria
will be highlighted.
- Choose the color or display characteristic that should be used to highlight or
include/exclude the filtered items. If "exclude" is chosen, the browser will not
display ESTs that match the filter criteria. If "include" is selected, the browser
will display only those ESTs that match the filter criteria.
- When you have finished configuring the filter, click the Submit button.
Credits
This track is produced at UCSC from EST sequence data submitted to the
international public sequence databases by scientists worldwide.