This track displays repeats from phusion.3 mouse aligned to the human sequence. Each block in the alignment is displayed as a colored block on the track with a line connecting all the blocks in an alignment. The color of each alignment indicates the percent identity of aligned residues over all blocks of the alignment. 50% identity and below is lightly colored and the color gets linearly darker as the percent identity approaches 100%.
The sequences were aligned with blastz (discontiguous exact seeds, ungapped extension, local alignments via dynamic programming) and postprocessed for single coverage.