# This file contains the worst disagreements between stride and dssp
# (based on summing log P(i,j)/P(i)P(j) for the two alphabets.
# The set checked was the t2k.ids set on 11 April 2002.
#
# I selected those where the bits_pre-residue was <= 0.75
# (107 out of 5844 sequences).
# Many of the problems are cross-chain beta sheets (CCB), which STRIDE
# misses. 
# Another common problem is alpha helices identified as extended turns
# mixed with 3-10 helix (AET).
# ID	length	score	bits_per_residue	
  1lenB	    47	-110.73	  -2.36		CCB
  2ltnB	    47	-108.26	  -2.30		CCB
  1aw8A	    24	 -52.93	  -2.21		CCB
  1a1rC	    16	 -23.40	  -1.46		CCB
  1jacB	    15	 -12.09	  -0.81		CCB
  1hymB	    24	 -19.05	  -0.79		CCB
  1dgwY	    92	 -42.76	  -0.46		CCB
  1kkoA	   411	-185.30	  -0.45	AET
  1dgwX	    76	 -34.32	  -0.45		CCB
  1ihrA	    73	 -30.63	  -0.42		CCB
  1dgrV	    76	 -31.15	  -0.41		CCB
  1jotB	    16	  -6.52	  -0.41		CCB
  1htmA	     5	  -1.95	  -0.39		CCB
  1dgrM	    92	 -32.72	  -0.36		CCB
  1dgrN	    76	 -25.94	  -0.34		CCB
  1dgrW	    93	 -30.49	  -0.33		CCB
  1axcB	    18	  -4.82	  -0.27		CCB
  1dwnA	   127	 -30.68	  -0.24 AET + broken bulged beta
  1g65K	   211	 -34.09	  -0.16 AET
   1bei	    35	  -5.36	  -0.15 unclear structure (1roo is cleaner homolog)
  1rypK	   198	 -27.02	  -0.14	AET
  1rypI	   222	 -19.73	  -0.09 AET
  1rypL	   212	 -16.80	  -0.08	AET
  1qjkA	    36	  -2.68	  -0.07	AET
  1rypH	   205	  -2.79	  -0.01	AET
  1rypJ	   204	  -1.28	  -0.01	AET
  1kveA	    63	  -0.88	  -0.01		CCB
  1fh1A	    37	  -0.03	  -0.00	disagreement seems mild, bulge in helix, and 3-10 vs alpha
# below this line I have not yet checked what the STRIDE/DSSP
# discrepancy is.  
   1bgk	    37	   2.24	   0.06
  1f58P	    10	   0.70	   0.07
  1kvdA	    63	   4.72	   0.07
  1fglB	    12	   1.49	   0.12
  1pyaA	    81	  12.30	   0.15
   1bh1	    26	   4.39	   0.17
  1e9kA	    38	   8.40	   0.22
  1ryp1	   222	  49.72	   0.22
   1hth	    34	   8.03	   0.24
  1bomB	    28	   8.09	   0.29
   1aty	    46	  13.66	   0.30
   1ehs	    48	  14.58	   0.30
  1ryp2	   233	  74.52	   0.32
  1cqzA	   487	 155.66	   0.32
   1ont	    21	   7.21	   0.34
  1mykA	    47	  16.46	   0.35
   1zfo	    30	  10.78	   0.36
  2cpgA	    43	  16.12	   0.37
  1ltsC	    41	  17.40	   0.42
  1ek1A	   490	 214.40	   0.44
  1hr8O	    13	   6.08	   0.47
  1aonO	    97	  45.64	   0.47
  1vppX	    20	   9.81	   0.49
   1bah	    37	  18.27	   0.49
  6rlxA	    24	  12.25	   0.51
   1bal	    51	  26.70	   0.52
  1as4B	    33	  17.51	   0.53
  1olgA	    42	  22.66	   0.54
   1bzg	    34	  18.54	   0.55
  3monB	    50	  27.72	   0.55
  1g2cA	    50	  27.76	   0.56
   1kal	    29	  16.41	   0.57
   1gw4	    46	  26.35	   0.57
  1bomA	    20	  11.63	   0.58
  1tahB	   318	 183.39	   0.58
  1edxA	    40	  23.73	   0.59
  1bzkA	    42	  24.76	   0.59
  1tbaA	    67	  40.20	   0.60
   1acp	    77	  46.53	   0.60
  1egpB	    22	  13.71	   0.62
   1mtx	    39	  24.12	   0.62
  1fs1A	    41	  25.41	   0.62
  1rypF	   233	 144.44	   0.62
  1irqA	    48	  30.13	   0.63
   2sxl	    88	  55.97	   0.64
  1qgeE	    97	  62.24	   0.64
  1rfbA	   119	  77.59	   0.65
  1h7dA	    49	  32.53	   0.66
   1bds	    43	  28.76	   0.67
   1cmr	    31	  21.08	   0.68
  1jjsA	    42	  28.58	   0.68
  1bvsB	   183	 123.66	   0.68
  1jmuA	    33	  22.63	   0.69
  1egpA	    39	  26.89	   0.69
  1hymA	    44	  30.18	   0.69
   1hsq	    71	  48.87	   0.69
  1dv0A	    45	  31.57	   0.70
  1jeiA	    53	  37.35	   0.70
   1opp	    38	  27.13	   0.71
   1brv	    19	  13.60	   0.72
  1ckwA	    25	  18.01	   0.72
  1htrP	    43	  30.80	   0.72
  1ewwA	    90	  64.82	   0.72
  1ceeB	    59	  43.03	   0.73
  1hloA	    80	  58.49	   0.73
  1c8pA	   102	  74.96	   0.73
  1cq4B	    23	  17.06	   0.74
  1jy2P	    44	  32.38	   0.74
  2kinB	   100	  74.37	   0.74
   1lyp	    32	  23.98	   0.75
   1ldr	    41	  30.94	   0.75
  1bazA	    49	  36.96	   0.75