InFilePrefix  /cse/faculty/karplus/dna/predict-2nd/testing/
OutFilePrefix /cse/faculty/karplus/dna/predict-2nd/testing/

ReadNeuralNet networks/t99-2877-IDaa13-9-6-11-9-5-8-9-ehl-seeded2.net
NameNet t99-2877-IDaa13-9-6-11-9-5-8-9-ehl-seeded2-trained.net

ReadParams params/21-nov-99
SetOverhang

# Note: the following includes read the training set(s),
# and, in doing so, reset the InFilePrefix

ReadToSet train
InFilePrefix  /cse/faculty/karplus/dna/predict-2nd/testing/training-data/
Include t99-2877.t99-read

ReportNetQualityForTrainTo quality-reports/t99-2877-IDaa13-9-6-11-9-5-8-9-ehl-seeded2-t.quality
ReportNetQualityForCrossTrainTo quality-reports/t99-2877-IDaa13-9-6-11-9-5-8-9-ehl-seeded2.quality


freeze 0
freeze 1
freeze 2
unfreeze 3
TrainNet 20

freeze 0
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freeze 3
TrainNet 5

freeze 0
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TrainNet 5

unfreeze 0
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TrainNet 5

freeze 0
freeze 1
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unfreeze 3
TrainNet 20

freeze 0
freeze 1
unfreeze 2
freeze 3
TrainNet 10

freeze 0
unfreeze 1
freeze 2
freeze 3
TrainNet 10

unfreeze 0
freeze 1
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TrainNet 10


freeze 0
freeze 1
freeze 2
unfreeze 3
TrainNet 20

freeze 0
freeze 1
unfreeze 2
freeze 3
TrainNet 10

freeze 0
unfreeze 1
freeze 2
freeze 3
TrainNet 10

unfreeze 0
freeze 1
freeze 2
freeze 3
TrainNet 10



ReportNeuralNet networks/t99-2877-IDaa13-9-6-11-9-5-8-9-ehl-seeded2-trained.net

ReportTrainByChain quality-reports/t99-2877-IDaa13-9-6-11-9-5-8-9-ehl-seeded2-trained.by-chain

ReportQvsPhatTo quality-reports/t99-2877-IDaa13-9-6-11-9-5-8-9-ehl-seeded2-trained.q-vs-phat

ReportUnitUsageTo quality-reports/t99-2877-IDaa13-9-6-11-9-5-8-9-ehl-seeded2-trained.unit-usage

TestNet