InFilePrefix /cse/faculty/karplus/dna/predict-2nd/testing/ OutFilePrefix /cse/faculty/karplus/dna/predict-2nd/testing/ ReadNeuralNet networks/t99-2877-IDaa13-5-8-7-10-5-9-7-ehl3-3-ehl-seeded-trained.net NameNet t99-2877-IDaa13-5-8-7-10-5-9-7-ehl3-3-ehl-seeded2-trained.net ReadParams params/3-jan-00 # Note: the following includes read the training set(s), # and, in doing so, reset the InFilePrefix ReadToSet train InFilePrefix /cse/faculty/karplus/dna/predict-2nd/testing/training-data/ Include t99-2877.t99-read-read SetOverhang ReportNetQualityForTrainTo quality-reports/t99-2877-IDaa13-5-8-7-10-5-9-7-ehl3-3-ehl-seeded2-t.quality ReportNetQualityForCrossTrainTo quality-reports/t99-2877-IDaa13-5-8-7-10-5-9-7-ehl3-3-ehl-seeded2.quality unfreeze 0 unfreeze 1 unfreeze 2 unfreeze 3 unfreeze 4 TrainNet 50 ReportNeuralNet networks/t99-2877-IDaa13-5-8-7-10-5-9-7-ehl3-3-ehl-seeded2-trained.net TrainNet 50 ReportNeuralNet networks/t99-2877-IDaa13-5-8-7-10-5-9-7-ehl3-3-ehl-seeded2-trained.net TrainNet 50 ReportNeuralNet networks/t99-2877-IDaa13-5-8-7-10-5-9-7-ehl3-3-ehl-seeded2-trained.net TrainNet 50 ReportNeuralNet networks/t99-2877-IDaa13-5-8-7-10-5-9-7-ehl3-3-ehl-seeded2-trained.net TrainNet 50 ReportNeuralNet networks/t99-2877-IDaa13-5-8-7-10-5-9-7-ehl3-3-ehl-seeded2-trained.net freeze 0 freeze 1 freeze 2 unfreeze 3 unfreeze 4 TrainNet 20 ReportNeuralNet networks/t99-2877-IDaa13-5-8-7-10-5-9-7-ehl3-3-ehl-seeded2-trained.net ReportTrainByChain quality-reports/t99-2877-IDaa13-5-8-7-10-5-9-7-ehl3-3-ehl-seeded2-trained.by-chain ReportQvsPhatTo quality-reports/t99-2877-IDaa13-5-8-7-10-5-9-7-ehl3-3-ehl-seeded2-trained.q-vs-phat ReportUnitUsageTo quality-reports/t99-2877-IDaa13-5-8-7-10-5-9-7-ehl3-3-ehl-seeded2-trained.unit-usage TestNet