InFilePrefix  /cse/faculty/karplus/dna/predict-2nd/testing/
OutFilePrefix /cse/faculty/karplus/dna/predict-2nd/testing/

ReadNeuralNet networks/t99-2877-IDaa13-5-8-7-10-5-9-11-ehl-seeded6-trained.net
NameNet t99-2877-IDaa13-5-8-7-10-5-9-11-ehl-seeded7-trained.net

ReadParams params/8-jan-00

# Note: the following includes read the training set(s),
# and, in doing so, reset the InFilePrefix

ReadToSet train
InFilePrefix  /cse/faculty/karplus/dna/predict-2nd/testing/training-data/
Include t99-2877.t99-read

SetOverhang

ReportNetQualityForTrainTo quality-reports/t99-2877-IDaa13-5-8-7-10-5-9-11-ehl-seeded7-t.quality
ReportNetQualityForCrossTrainTo quality-reports/t99-2877-IDaa13-5-8-7-10-5-9-11-ehl-seeded7.quality



unfreeze 0
unfreeze 1
unfreeze 2
unfreeze 3

TrainNet 50
ReportNeuralNet networks/t99-2877-IDaa13-5-8-7-10-5-9-11-ehl-seeded7-trained.net


TrainNet 50
ReportNeuralNet networks/t99-2877-IDaa13-5-8-7-10-5-9-11-ehl-seeded7-trained.net

TrainNet 50
ReportNeuralNet networks/t99-2877-IDaa13-5-8-7-10-5-9-11-ehl-seeded7-trained.net

TrainNet 50
ReportNeuralNet networks/t99-2877-IDaa13-5-8-7-10-5-9-11-ehl-seeded7-trained.net

TrainNet 50
ReportNeuralNet networks/t99-2877-IDaa13-5-8-7-10-5-9-11-ehl-seeded7-trained.net

TrainNet 50
ReportNeuralNet networks/t99-2877-IDaa13-5-8-7-10-5-9-11-ehl-seeded7-trained.net

TrainNet 50
ReportNeuralNet networks/t99-2877-IDaa13-5-8-7-10-5-9-11-ehl-seeded7-trained.net


ReportTrainByChain quality-reports/t99-2877-IDaa13-5-8-7-10-5-9-11-ehl-seeded7-trained.by-chain

ReportQvsPhatTo quality-reports/t99-2877-IDaa13-5-8-7-10-5-9-11-ehl-seeded7-trained.q-vs-phat

ReportUnitUsageTo quality-reports/t99-2877-IDaa13-5-8-7-10-5-9-11-ehl-seeded7-trained.unit-usage

TestNet