InFilePrefix  /cse/faculty/karplus/dna/predict-2nd/testing/
OutFilePrefix /cse/faculty/karplus/dna/predict-2nd/testing/

ReadNeuralNet networks/t99-1984-IDaa13-9-6-11-9-3-8-7-ehl-seeded2-trained.net
NameNet t99-1984-IDaa13-9-6-11-9-3-8-7-ehl-seeded3-trained.net

ReadParams params/17-nov-99

# Note: the following includes read the training set(s),
# and, in doing so, reset the InFilePrefix

ReadToSet train
InFilePrefix  /cse/faculty/karplus/dna/predict-2nd/testing/training-data/
Include t99-1984.t99-read

ReportNetQualityForTrainTo quality-reports/t99-1984-IDaa13-9-6-11-9-3-8-7-ehl-seeded3-t.quality
ReportNetQualityForCrossTrainTo quality-reports/t99-1984-IDaa13-9-6-11-9-3-8-7-ehl-seeded3.quality


unfreeze 0
freeze 1
freeze 2
freeze 3
TrainNet 80

freeze 0
unfreeze 1
freeze 2
freeze 3
TrainNet 80

freeze 0
freeze 1
unfreeze 2
freeze 3
TrainNet 30

freeze 0
freeze 1
freeze 2
unfreeze 3
TrainNet 60

unfreeze 0
freeze 1
freeze 2
freeze 3
TrainNet 80

ReportNeuralNet networks/t99-1984-IDaa13-9-6-11-9-3-8-7-ehl-seeded3-trained.net