InFilePrefix  /cse/faculty/karplus/dna/predict-2nd/testing/
OutFilePrefix /cse/faculty/karplus/dna/predict-2nd/testing/

ReadNeuralNet networks/overrep-2260-guide-aa13-5-8-7-10-5-9-11-ehl-seeded-trained.net

ReadParams params/2-feb-00-fast

# Note: the following includes read the training set(s),
# and, in doing so, reset the InFilePrefix

ReadToSet test
InFilePrefix  /cse/faculty/karplus/dna/predict-2nd/testing/training-data/
Include overrep-2260.t99-read

ReportNetQualityForTestTo quality-reports/overrep-2260-guide-aa13-5-8-7-10-5-9-11-ehl-seeded-trained-t99.quality

ReportTestByChain quality-reports/overrep-2260-guide-aa13-5-8-7-10-5-9-11-ehl-seeded-trained-t99.by-chain

ReportQvsPhatTo quality-reports/overrep-2260-guide-aa13-5-8-7-10-5-9-11-ehl-seeded-trained-t99.q-vs-phat

ReportUnitUsageTo quality-reports/overrep-2260-guide-aa13-5-8-7-10-5-9-11-ehl-seeded-trained-t99.unit-usage

TestNet