# command:# Prefix for input files set to 
# command:# Prefix for output files set to 
# command:# Read 13 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/hbonds.alphabet
# command:# Neural network set to dunbrack-30pc-1763-t06-thin90-IDGaaH13-3-13-7-13-9-13-11-tr12-str2uc-from-empty.net
# command:# Neural network set to dunbrack-40pc-1763-t06-IDGaaH13-3-13-7-13-9-13-11-str2uc-seeded.net
# command:# Learning params read from /projects/compbio/experiments/protein-predict/predict-2nd/testing/params/7-jul-05.params
# command:# Initializing Gain for str2uc
WARNING: BackgroundProbs for str2uc not read in before initializing network.
# Initializing Gain for third_layer
# Initializing Gain for second_layer
# Initializing Gain for FirstLayer
# Network initialization done
# command:CPU_time= 0.010999 sec, elapsed time= 0.128717 sec)
# command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/predict-2nd/testing/training-data/
# command:Warning: Couldn't open file /projects/compbio/experiments/protein-predict/predict-2nd/testing/training-data/dunbrack-40pc-1763.t06-str2uc or /projects/compbio/experiments/protein-predict/predict-2nd/testing/training-data/dunbrack-40pc-1763.t06-str2uc.gz for input
Trying dunbrack-40pc-1763.t06-str2uc
Error: Couldn't open file dunbrack-40pc-1763.t06-str2uc or dunbrack-40pc-1763.t06-str2uc.gz for input