/projects/compbio/experiments/models.97/scripts/serial-make -makefile /projects/compbio/experiments/protein-predict/predict-2nd/testing/Make.para -nouse_subdir -modelsdir /projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev -targets 'TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts' < ../training-data/fullset.nets # Mon Nov 15 23:46:34 2010 # net1: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net1' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net1/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net1' # Mon Nov 15 23:46:34 2010 # net10: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net10' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net10/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net10' # Mon Nov 15 23:46:34 2010 # net100: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net100' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net100/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net100' # Mon Nov 15 23:46:34 2010 # net11: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net11' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net11/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net11' # Mon Nov 15 23:46:34 2010 # net12: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net12' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net12/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net12' # Mon Nov 15 23:46:35 2010 # net13: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net13' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net13/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net13' # Mon Nov 15 23:46:35 2010 # net14: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net14' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net14/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net14' # Mon Nov 15 23:46:35 2010 # net15: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net15' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net15/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net15' # Mon Nov 15 23:46:35 2010 # net16: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net16' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net16/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net16' # Mon Nov 15 23:46:35 2010 # net17: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net17' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net17/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net17' # Mon Nov 15 23:46:35 2010 # net18: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net18' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net18/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net18' # Mon Nov 15 23:46:35 2010 # net19: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net19' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net19/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net19' # Mon Nov 15 23:46:35 2010 # net2: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net2' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net2/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net2' # Mon Nov 15 23:46:35 2010 # net20: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net20' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net20/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net20' # Mon Nov 15 23:46:35 2010 # net21: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net21' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net21/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net21' # Mon Nov 15 23:46:35 2010 # net22: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net22' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net22/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net22' # Mon Nov 15 23:46:35 2010 # net23: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net23' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net23/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net23' # Mon Nov 15 23:46:35 2010 # net24: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net24' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net24/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net24' # Mon Nov 15 23:46:35 2010 # net25: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net25' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net25/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net25' # Mon Nov 15 23:46:35 2010 # net26: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net26' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net26/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net26' # Mon Nov 15 23:46:35 2010 # net27: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net27' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net27/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net27' # Mon Nov 15 23:46:35 2010 # net28: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net28' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net28/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net28' # Mon Nov 15 23:46:35 2010 # net29: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net29' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net29/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net29' # Mon Nov 15 23:46:35 2010 # net3: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net3' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net3/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net3' # Mon Nov 15 23:46:35 2010 # net30: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net30' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net30/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net30' # Mon Nov 15 23:46:35 2010 # net31: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net31' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net31/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net31' # Mon Nov 15 23:46:35 2010 # net32: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net32' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net32/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net32' # Mon Nov 15 23:46:35 2010 # net33: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net33' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net33/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net33' # Mon Nov 15 23:46:35 2010 # net34: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net34' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net34/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net34' # Mon Nov 15 23:46:35 2010 # net35: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net35' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net35/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net35' # Mon Nov 15 23:46:35 2010 # net36: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net36' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net36/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net36' # Mon Nov 15 23:46:35 2010 # net37: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net37' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net37/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net37' # Mon Nov 15 23:46:35 2010 # net38: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net38' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net38/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net38' # Mon Nov 15 23:46:35 2010 # net39: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net39' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net39/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net39' # Mon Nov 15 23:46:36 2010 # net4: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net4' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net4/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net4' # Mon Nov 15 23:46:36 2010 # net40: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net40' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net40/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net40' # Mon Nov 15 23:46:36 2010 # net41: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net41' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net41/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net41' # Mon Nov 15 23:46:36 2010 # net42: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net42' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net42/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net42' # Mon Nov 15 23:46:36 2010 # net43: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net43' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net43/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net43' # Mon Nov 15 23:46:36 2010 # net44: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net44' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net44/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net44' # Mon Nov 15 23:46:36 2010 # net45: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net45' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net45/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net45' # Mon Nov 15 23:46:36 2010 # net46: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net46' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net46/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net46' # Mon Nov 15 23:46:36 2010 # net47: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net47' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net47/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net47' # Mon Nov 15 23:46:36 2010 # net48: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net48' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net48/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net48' # Mon Nov 15 23:46:36 2010 # net49: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net49' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net49/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net49' # Mon Nov 15 23:46:36 2010 # net5: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net5' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net5/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net5' # Mon Nov 15 23:46:36 2010 # net50: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net50' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net50/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net50' # Mon Nov 15 23:46:36 2010 # net51: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net51' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net51/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net51' # Mon Nov 15 23:46:36 2010 # net52: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net52' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net52/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net52' # Mon Nov 15 23:46:36 2010 # net53: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net53' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net53/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net53' # Mon Nov 15 23:46:36 2010 # net54: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net54' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net54/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net54' # Mon Nov 15 23:46:36 2010 # net55: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net55' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net55/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net55' # Mon Nov 15 23:46:36 2010 # net56: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net56' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net56/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net56' # Mon Nov 15 23:46:36 2010 # net57: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net57' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net57/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net57' # Mon Nov 15 23:46:36 2010 # net58: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net58' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net58/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net58' # Mon Nov 15 23:46:36 2010 # net59: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net59' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net59/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net59' # Mon Nov 15 23:46:36 2010 # net6: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net6' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net6/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net6' # Mon Nov 15 23:46:36 2010 # net60: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net60' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net60/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net60' # Mon Nov 15 23:46:36 2010 # net61: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net61' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net61/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net61' # Mon Nov 15 23:46:36 2010 # net62: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net62' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net62/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net62' # Mon Nov 15 23:46:36 2010 # net63: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net63' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net63/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net63' # Mon Nov 15 23:46:36 2010 # net64: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net64' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net64/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net64' # Mon Nov 15 23:46:36 2010 # net65: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net65' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net65/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net65' # Mon Nov 15 23:46:37 2010 # net66: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net66' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net66/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net66' # Mon Nov 15 23:46:37 2010 # net67: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net67' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net67/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net67' # Mon Nov 15 23:46:37 2010 # net68: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net68' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net68/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net68' # Mon Nov 15 23:46:37 2010 # net69: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net69' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net69/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net69' # Mon Nov 15 23:46:37 2010 # net7: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net7' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net7/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net7' # Mon Nov 15 23:46:37 2010 # net70: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net70' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net70/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net70' # Mon Nov 15 23:46:37 2010 # net71: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net71' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net71/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net71' # Mon Nov 15 23:46:37 2010 # net72: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net72' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net72/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net72' # Mon Nov 15 23:46:37 2010 # net73: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net73' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net73/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net73' # Mon Nov 15 23:46:37 2010 # net74: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net74' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net74/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net74' # Mon Nov 15 23:46:37 2010 # net75: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net75' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net75/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net75' # Mon Nov 15 23:46:37 2010 # net76: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net76' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net76/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net76' # Mon Nov 15 23:46:37 2010 # net77: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net77' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net77/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net77' # Mon Nov 15 23:46:40 2010 # net78: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net78' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net78/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net78' # Mon Nov 15 23:46:40 2010 # net79: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net79' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net79/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net79' # Mon Nov 15 23:46:41 2010 # net8: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net8' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net8/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net8' # Mon Nov 15 23:46:41 2010 # net80: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net80' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net80/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net80' # Mon Nov 15 23:46:41 2010 # net81: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net81' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net81/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net81' # Mon Nov 15 23:46:41 2010 # net82: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net82' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net82/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net82' # Mon Nov 15 23:46:41 2010 # net83: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net83' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net83/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net83' # Mon Nov 15 23:46:41 2010 # net84: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net84' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net84/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net84' # Mon Nov 15 23:46:41 2010 # net85: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net85' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net85/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net85' # Mon Nov 15 23:46:41 2010 # net86: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net86' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net86/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net86' # Mon Nov 15 23:46:41 2010 # net87: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net87' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net87/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net87' # Mon Nov 15 23:46:41 2010 # net88: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net88' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net88/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net88' # Mon Nov 15 23:46:41 2010 # net89: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net89' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net89/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net89' # Mon Nov 15 23:46:41 2010 # net9: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net9' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net9/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net9' # Mon Nov 15 23:46:41 2010 # net90: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net90' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net90/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net90' # Mon Nov 15 23:46:41 2010 # net91: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net91' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net91/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net91' # Mon Nov 15 23:46:41 2010 # net92: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net92' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net92/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net92' # Mon Nov 15 23:46:41 2010 # net93: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net93' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net93/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net93' # Mon Nov 15 23:46:41 2010 # net94: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net94' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net94/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net94' # Mon Nov 15 23:46:41 2010 # net95: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net95' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net95/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net95' # Mon Nov 15 23:46:41 2010 # net96: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net96' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net96/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net96' # Mon Nov 15 23:46:41 2010 # net97: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net97' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net97/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net97' # Mon Nov 15 23:46:41 2010 # net98: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net98' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net98/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net98' # Mon Nov 15 23:46:41 2010 # net99: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net99' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5/" \ | sed -e "s/NETNUM/net99/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net99' /projects/compbio/experiments/models.97/scripts/para-trickle-make -se2log -cluster bmecluster -manyids -max_jobs 10 -rmvdir -makefile /projects/compbio/experiments/protein-predict/predict-2nd/testing/Make.para -nouse_subdir -modelsdir /projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev -targets 'TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50-tr12.run' < ../training-data/fullset.nets para-trickle-make: -terse option suppresses most messages. para-trickle-make: -verbose option generates more messages. para-trickle-make: -help option gives the full usage menu. para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-bmecluster-karplus-9333-65008491/README for more info. /projects/compbio/experiments/models.97/scripts/para-trickle-make -se2log -cluster bmecluster -manyids -max_jobs 10 -rmvdir -makefile /projects/compbio/experiments/protein-predict/predict-2nd/testing/Make.para -nouse_subdir -modelsdir /projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev -targets 'TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50-tr23.run' < ../training-data/fullset.nets para-trickle-make: -terse option suppresses most messages. para-trickle-make: -verbose option generates more messages. para-trickle-make: -help option gives the full usage menu. para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-bmecluster-karplus-9343-46918771/README for more info. /projects/compbio/experiments/models.97/scripts/para-trickle-make -se2log -cluster bmecluster -manyids -max_jobs 10 -rmvdir -makefile /projects/compbio/experiments/protein-predict/predict-2nd/testing/Make.para -nouse_subdir -modelsdir /projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev -targets 'TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-5-15-7-13-7-15-5 DATASET=dunbrack-30pc-1763 mult50-tr31.run' < ../training-data/fullset.nets para-trickle-make: -terse option suppresses most messages. para-trickle-make: -verbose option generates more messages. para-trickle-make: -help option gives the full usage menu. para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-bmecluster-karplus-9358-36238213/README for more info.