make TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 dirs make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev' mkdir logs mkdir: cannot create directory `logs': File exists make[1]: [dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[1]: [dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[1]: [dirs] Error 1 (ignored) mkdir networks mkdir: cannot create directory `networks': File exists make[1]: [dirs] Error 1 (ignored) /projects/compbio/experiments/models.97/scripts/serial-make -makefile /projects/compbio/experiments/protein-predict/predict-2nd/testing/Make.para -nouse_subdir -modelsdir /projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev -targets 'TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs' < ../training-data/fullset.nets & make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev' make TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 trAB-mult50.scripts make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev' /projects/compbio/experiments/models.97/scripts/serial-make -makefile /projects/compbio/experiments/protein-predict/predict-2nd/testing/Make.para -nouse_subdir -modelsdir /projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev -targets 'TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts' < ../training-data/fullset.nets # Mon Nov 22 16:00:33 2010 # net001: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs # Mon Nov 22 16:00:33 2010 # net001: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net001' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net001/" \ > run-scripts/tmp.THIRDStrAB.script make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net001' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net001' # Mon Nov 22 16:00:33 2010 # net002: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net002' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net002' # Mon Nov 22 16:00:33 2010 # net003: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net003' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net003' # Mon Nov 22 16:00:33 2010 # net004: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net004' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net004' # Mon Nov 22 16:00:33 2010 # net005: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net005' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net005' # Mon Nov 22 16:00:33 2010 # net006: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net006' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net006' # Mon Nov 22 16:00:33 2010 # net007: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net007' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net007' # Mon Nov 22 16:00:33 2010 # net008: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net008' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net008' # Mon Nov 22 16:00:34 2010 # net009: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net009' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net009' # Mon Nov 22 16:00:34 2010 # net010: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net010' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net010' # Mon Nov 22 16:00:34 2010 # net011: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net011' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports rm -f run-scripts/tmp.THIRDStrAB.script mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net011' # Mon Nov 22 16:00:34 2010 # net012: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net001' # Mon Nov 22 16:00:34 2010 # net002: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net002' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net002/" \ > run-scripts/tmp.THIRDStrAB.script make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net012' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net012' # Mon Nov 22 16:00:34 2010 # net013: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net013' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net013' # Mon Nov 22 16:00:34 2010 # net014: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net014' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net014' # Mon Nov 22 16:00:34 2010 # net015: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net015' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net015' # Mon Nov 22 16:00:34 2010 # net016: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net016' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net016' # Mon Nov 22 16:00:34 2010 # net017: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net017' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net017' # Mon Nov 22 16:00:34 2010 # net018: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net018' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net018' # Mon Nov 22 16:00:34 2010 # net019: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net019' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net019' # Mon Nov 22 16:00:34 2010 # net020: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net020' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net020' # Mon Nov 22 16:00:34 2010 # net021: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net021' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net021' # Mon Nov 22 16:00:34 2010 # net022: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net022' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net022' # Mon Nov 22 16:00:34 2010 # net023: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net023' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net023' # Mon Nov 22 16:00:34 2010 # net024: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net024' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net024' # Mon Nov 22 16:00:34 2010 # net025: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net025' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net025' # Mon Nov 22 16:00:34 2010 # net026: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net026' mkdir networks cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts rm -f run-scripts/tmp.THIRDStrAB.script mkdir: cannot create directory `run-scripts': File exists make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net002' make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs # Mon Nov 22 16:00:34 2010 # net003: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net026' # Mon Nov 22 16:00:34 2010 # net027: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net003' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net003/" \ > run-scripts/tmp.THIRDStrAB.script make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net027' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net027' # Mon Nov 22 16:00:34 2010 # net028: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net028' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net028' # Mon Nov 22 16:00:34 2010 # net029: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net029' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net029' # Mon Nov 22 16:00:34 2010 # net030: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net030' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net030' # Mon Nov 22 16:00:34 2010 # net031: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net031' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net031' # Mon Nov 22 16:00:34 2010 # net032: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net032' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net032' # Mon Nov 22 16:00:34 2010 # net033: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net033' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net033' # Mon Nov 22 16:00:34 2010 # net034: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net034' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net034' # Mon Nov 22 16:00:34 2010 # net035: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net035' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net035' # Mon Nov 22 16:00:34 2010 # net036: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net036' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net036' # Mon Nov 22 16:00:34 2010 # net037: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net037' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net003' mkdir: cannot create directory `logs': File exists # Mon Nov 22 16:00:34 2010 # net004: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net037' # Mon Nov 22 16:00:34 2010 # net038: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net004' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net004/" \ > run-scripts/tmp.THIRDStrAB.script make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net038' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net038' # Mon Nov 22 16:00:34 2010 # net039: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net039' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net039' # Mon Nov 22 16:00:34 2010 # net040: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net040' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net040' # Mon Nov 22 16:00:34 2010 # net041: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net041' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net041' # Mon Nov 22 16:00:34 2010 # net042: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net042' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net042' # Mon Nov 22 16:00:34 2010 # net043: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net043' mkdir networks cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net043' # Mon Nov 22 16:00:34 2010 # net044: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net004' make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net044' mkdir networks # Mon Nov 22 16:00:34 2010 # net005: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net044' # Mon Nov 22 16:00:34 2010 # net045: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net005' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net005/" \ > run-scripts/tmp.THIRDStrAB.script make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net045' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net045' # Mon Nov 22 16:00:34 2010 # net046: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net046' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net046' # Mon Nov 22 16:00:34 2010 # net047: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net047' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net047' # Mon Nov 22 16:00:34 2010 # net048: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net048' mkdir networks cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net048' # Mon Nov 22 16:00:34 2010 # net049: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net049' mkdir networks cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net049' # Mon Nov 22 16:00:34 2010 # net050: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net005' # Mon Nov 22 16:00:34 2010 # net006: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIRmkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net006' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net006/" \ > run-scripts/tmp.THIRDStrAB.script mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net050' # Mon Nov 22 16:00:34 2010 # net051: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net051' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net051' # Mon Nov 22 16:00:34 2010 # net052: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net052' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net052' # Mon Nov 22 16:00:34 2010 # net053: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net053' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net053' # Mon Nov 22 16:00:34 2010 # net054: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net054' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net054' # Mon Nov 22 16:00:34 2010 # net055: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net055' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net055' # Mon Nov 22 16:00:34 2010 # net056: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net056' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net056' cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script # Mon Nov 22 16:00:34 2010 # net057: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net057' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net057' # Mon Nov 22 16:00:34 2010 # net058: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net058' mkdir networks make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net006' # Mon Nov 22 16:00:34 2010 # net007: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net007' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net007/" \ > run-scripts/tmp.THIRDStrAB.script mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net058' # Mon Nov 22 16:00:34 2010 # net059: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net059' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net059' # Mon Nov 22 16:00:34 2010 # net060: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net060' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net060' # Mon Nov 22 16:00:34 2010 # net061: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net061' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net061' # Mon Nov 22 16:00:34 2010 # net062: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net062' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net062' # Mon Nov 22 16:00:34 2010 # net063: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net063' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net063' # Mon Nov 22 16:00:34 2010 # net064: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net064' mkdir networks rm -f run-scripts/tmp.THIRDStrAB.script mkdir: cannot create directory `networks': File exists make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net007' make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts # Mon Nov 22 16:00:34 2010 # net008: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File existsmake[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net008' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net008/" \ > run-scripts/tmp.THIRDStrAB.script make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net064' # Mon Nov 22 16:00:34 2010 # net065: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net065' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net065' # Mon Nov 22 16:00:34 2010 # net066: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net066' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net066' # Mon Nov 22 16:00:34 2010 # net067: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net067' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net067' # Mon Nov 22 16:00:34 2010 # net068: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net068' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net068' # Mon Nov 22 16:00:34 2010 # net069: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net008' # Mon Nov 22 16:00:34 2010 # net009: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net069' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net009' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net009/" \ > run-scripts/tmp.THIRDStrAB.script make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net069' # Mon Nov 22 16:00:34 2010 # net070: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net070' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net070' # Mon Nov 22 16:00:34 2010 # net071: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net071' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net071' # Mon Nov 22 16:00:34 2010 # net072: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net072' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net072' # Mon Nov 22 16:00:34 2010 # net073: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net073' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net073' # Mon Nov 22 16:00:34 2010 # net074: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net074' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net074' # Mon Nov 22 16:00:34 2010 # net075: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net075' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net075' # Mon Nov 22 16:00:34 2010 # net076: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net076' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net076' # Mon Nov 22 16:00:34 2010 # net077: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net077' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net077' # Mon Nov 22 16:00:34 2010 # net078: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net078' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net078' # Mon Nov 22 16:00:34 2010 # net079: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net079' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net079' # Mon Nov 22 16:00:34 2010 # net080: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net080' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net080' # Mon Nov 22 16:00:34 2010 # net081: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net081' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net081' # Mon Nov 22 16:00:34 2010 # net082: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net082' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net082' # Mon Nov 22 16:00:35 2010 # net083: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net083' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net083' # Mon Nov 22 16:00:35 2010 # net084: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net084' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net084' # Mon Nov 22 16:00:35 2010 # net085: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net085' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net085' # Mon Nov 22 16:00:35 2010 # net086: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net009' # Mon Nov 22 16:00:35 2010 # net010: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net086' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net010' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net010/" \ > run-scripts/tmp.THIRDStrAB.script mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net086' # Mon Nov 22 16:00:35 2010 # net087: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net087' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net087' # Mon Nov 22 16:00:35 2010 # net088: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net088' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net088' # Mon Nov 22 16:00:35 2010 # net089: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net089' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net089' # Mon Nov 22 16:00:35 2010 # net090: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net090' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net090' # Mon Nov 22 16:00:35 2010 # net091: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net091' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net091' # Mon Nov 22 16:00:35 2010 # net092: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net092' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net092' # Mon Nov 22 16:00:35 2010 # net093: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net093' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net093' # Mon Nov 22 16:00:35 2010 # net094: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net094' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net094' # Mon Nov 22 16:00:35 2010 # net095: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net095' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net095' cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script # Mon Nov 22 16:00:35 2010 # net096: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net010' # Mon Nov 22 16:00:35 2010 # net011: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net096' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs make[2]: Entering directory `/project: File exists riments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net011' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net011/" \ > run-scripts/tmp.THIRDStrAB.script make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net096' # Mon Nov 22 16:00:35 2010 # net097: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net097' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net097' # Mon Nov 22 16:00:35 2010 # net098: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net098' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net098' # Mon Nov 22 16:00:35 2010 # net099: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net099' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net099' # Mon Nov 22 16:00:35 2010 # net100: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.dirs make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net100' mkdir networks mkdir: cannot create directory `networks': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir run-scripts mkdir: cannot create directory `run-scripts': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir logs mkdir: cannot create directory `logs': File exists make[2]: [mult50.dirs] Error 1 (ignored) mkdir quality-reports mkdir: cannot create directory `quality-reports': File exists make[2]: [mult50.dirs] Error 1 (ignored) make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net100' cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net011' # Mon Nov 22 16:00:35 2010 # net012: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net012' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net012/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net012' # Mon Nov 22 16:00:35 2010 # net013: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net013' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net013/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net013' # Mon Nov 22 16:00:35 2010 # net014: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net014' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net014/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net014' # Mon Nov 22 16:00:35 2010 # net015: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net015' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net015/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net015' # Mon Nov 22 16:00:35 2010 # net016: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net016' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net016/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net016' # Mon Nov 22 16:00:35 2010 # net017: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net017' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net017/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net017' # Mon Nov 22 16:00:35 2010 # net018: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net018' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net018/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net018' # Mon Nov 22 16:00:35 2010 # net019: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net019' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net019/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net019' # Mon Nov 22 16:00:36 2010 # net020: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net020' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net020/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net020' # Mon Nov 22 16:00:36 2010 # net021: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net021' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net021/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net021' # Mon Nov 22 16:00:36 2010 # net022: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net022' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net022/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net022' # Mon Nov 22 16:00:36 2010 # net023: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net023' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net023/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net023' # Mon Nov 22 16:00:36 2010 # net024: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net024' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net024/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net024' # Mon Nov 22 16:00:36 2010 # net025: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net025' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net025/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net025' # Mon Nov 22 16:00:36 2010 # net026: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net026' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net026/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net026' # Mon Nov 22 16:00:36 2010 # net027: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net027' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net027/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net027' # Mon Nov 22 16:00:36 2010 # net028: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net028' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net028/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net028' # Mon Nov 22 16:00:36 2010 # net029: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net029' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net029/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net029' # Mon Nov 22 16:00:41 2010 # net030: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net030' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net030/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net030' # Mon Nov 22 16:00:41 2010 # net031: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net031' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net031/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net031' # Mon Nov 22 16:00:41 2010 # net032: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net032' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net032/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net032' # Mon Nov 22 16:00:41 2010 # net033: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net033' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net033/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net033' # Mon Nov 22 16:00:41 2010 # net034: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net034' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net034/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net034' # Mon Nov 22 16:00:41 2010 # net035: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net035' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net035/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net035' # Mon Nov 22 16:00:41 2010 # net036: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net036' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net036/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net036' # Mon Nov 22 16:00:41 2010 # net037: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net037' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net037/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net037' # Mon Nov 22 16:00:42 2010 # net038: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net038' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net038/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net038' # Mon Nov 22 16:00:42 2010 # net039: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net039' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net039/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net039' # Mon Nov 22 16:00:42 2010 # net040: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net040' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net040/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net040' # Mon Nov 22 16:00:42 2010 # net041: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net041' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net041/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net041' # Mon Nov 22 16:00:42 2010 # net042: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net042' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net042/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net042' # Mon Nov 22 16:00:42 2010 # net043: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net043' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net043/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net043' # Mon Nov 22 16:00:42 2010 # net044: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net044' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net044/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net044' # Mon Nov 22 16:00:42 2010 # net045: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net045' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net045/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net045' # Mon Nov 22 16:00:43 2010 # net046: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net046' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net046/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net046' # Mon Nov 22 16:00:43 2010 # net047: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net047' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net047/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net047' # Mon Nov 22 16:00:43 2010 # net048: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net048' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net048/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net048' # Mon Nov 22 16:00:43 2010 # net049: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net049' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net049/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net049' # Mon Nov 22 16:00:43 2010 # net050: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net050' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net050/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net050' # Mon Nov 22 16:00:43 2010 # net051: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net051' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net051/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net051' # Mon Nov 22 16:00:43 2010 # net052: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net052' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net052/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net052' # Mon Nov 22 16:00:43 2010 # net053: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net053' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net053/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net053' # Mon Nov 22 16:00:43 2010 # net054: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net054' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net054/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net054' # Mon Nov 22 16:00:43 2010 # net055: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net055' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net055/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net055' # Mon Nov 22 16:00:44 2010 # net056: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net056' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net056/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net056' # Mon Nov 22 16:00:44 2010 # net057: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net057' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net057/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net057' # Mon Nov 22 16:00:44 2010 # net058: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net058' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net058/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net058' # Mon Nov 22 16:00:44 2010 # net059: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net059' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net059/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net059' # Mon Nov 22 16:00:44 2010 # net060: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net060' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net060/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net060' # Mon Nov 22 16:00:44 2010 # net061: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net061' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net061/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net061' # Mon Nov 22 16:00:44 2010 # net062: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net062' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net062/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net062' # Mon Nov 22 16:00:45 2010 # net063: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net063' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net063/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net063' # Mon Nov 22 16:00:45 2010 # net064: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net064' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net064/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net064' # Mon Nov 22 16:00:45 2010 # net065: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net065' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net065/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net065' # Mon Nov 22 16:00:45 2010 # net066: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net066' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net066/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net066' # Mon Nov 22 16:00:45 2010 # net067: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net067' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net067/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net067' # Mon Nov 22 16:00:45 2010 # net068: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net068' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net068/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net068' # Mon Nov 22 16:00:45 2010 # net069: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net069' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net069/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net069' # Mon Nov 22 16:00:45 2010 # net070: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net070' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net070/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net070' # Mon Nov 22 16:00:45 2010 # net071: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net071' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net071/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net071' # Mon Nov 22 16:00:46 2010 # net072: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net072' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net072/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net072' # Mon Nov 22 16:00:46 2010 # net073: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net073' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net073/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net073' # Mon Nov 22 16:00:46 2010 # net074: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net074' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net074/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net074' # Mon Nov 22 16:00:46 2010 # net075: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net075' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net075/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net075' # Mon Nov 22 16:00:46 2010 # net076: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net076' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net076/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net076' # Mon Nov 22 16:00:46 2010 # net077: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net077' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net077/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net077' # Mon Nov 22 16:00:49 2010 # net078: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net078' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net078/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net078' # Mon Nov 22 16:00:49 2010 # net079: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net079' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net079/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net079' # Mon Nov 22 16:00:49 2010 # net080: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net080' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net080/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net080' # Mon Nov 22 16:00:49 2010 # net081: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net081' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net081/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net081' # Mon Nov 22 16:00:49 2010 # net082: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net082' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net082/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net082' # Mon Nov 22 16:00:49 2010 # net083: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net083' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net083/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net083' # Mon Nov 22 16:00:50 2010 # net084: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net084' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net084/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net084' # Mon Nov 22 16:00:50 2010 # net085: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net085' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net085/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net085' # Mon Nov 22 16:00:50 2010 # net086: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net086' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net086/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net086' # Mon Nov 22 16:00:50 2010 # net087: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net087' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net087/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net087' # Mon Nov 22 16:00:50 2010 # net088: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net088' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net088/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net088' # Mon Nov 22 16:00:50 2010 # net089: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net089' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net089/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net089' # Mon Nov 22 16:00:50 2010 # net090: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net090' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net090/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net090' # Mon Nov 22 16:00:50 2010 # net091: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net091' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net091/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net091' # Mon Nov 22 16:00:50 2010 # net092: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net092' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net092/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net092' # Mon Nov 22 16:00:50 2010 # net093: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net093' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net093/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net093' # Mon Nov 22 16:00:50 2010 # net094: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net094' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net094/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net094' # Mon Nov 22 16:00:51 2010 # net095: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net095' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net095/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net095' # Mon Nov 22 16:00:51 2010 # net096: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net096' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net096/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net096' # Mon Nov 22 16:00:51 2010 # net097: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net097' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net097/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net097' # Mon Nov 22 16:00:51 2010 # net098: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net098' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net098/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net098' # Mon Nov 22 16:00:51 2010 # net099: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net099' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net099/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net099' # Mon Nov 22 16:00:51 2010 # net100: TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50.scripts make[2]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net100' cat ../../run-scripts/DATASET-TXXALIGN-ARCHITECTURE-THIRDSNAME-ALPHANAME-MULT50-from-empty.template.script \ | sed -e "s/ALPHANAME/aa/" \ | sed -e "s/ALPHALIBFILE/combined-relabel.alphabet/" \ | sed -e "s/PARAMFILE/7-jul-05.params/" \ | sed -e "s/DATASET/dunbrack-30pc-1763/" \ | sed -e "s/TXXALIGN/str2uc-near-backbone-11-20/" \ | sed -e "s/ARCHITECTURE/Gstr2uc_near_backbone_11_20-9-17-5-20-3/" \ | sed -e "s/NETNUM/net100/" \ > run-scripts/tmp.THIRDStrAB.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr12/" \ | sed -e "s/THIRDSA/1/" \ | sed -e "s/THIRDSB/2/" \ | sed -e "s/THIRDSC/3/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr12-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr23/" \ | sed -e "s/THIRDSA/2/" \ | sed -e "s/THIRDSB/3/" \ | sed -e "s/THIRDSC/1/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr23-aa-mult50-from-empty.script cat run-scripts/tmp.THIRDStrAB.script \ | sed -e "s/THIRDSNAME/tr31/" \ | sed -e "s/THIRDSA/3/" \ | sed -e "s/THIRDSB/1/" \ | sed -e "s/THIRDSC/2/" \ > run-scripts/dunbrack-30pc-1763-str2uc-near-backbone-11-20-Gstr2uc_near_backbone_11_20-9-17-5-20-3-tr31-aa-mult50-from-empty.script rm -f run-scripts/tmp.THIRDStrAB.script make[2]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev/net100' make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev' make TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 trAB-mult50.run make[1]: Entering directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev' /projects/compbio/experiments/models.97/scripts/para-trickle-make -se2log -cluster bmecluster -manyids -max_jobs 10 -rmvdir -makefile /projects/compbio/experiments/protein-predict/predict-2nd/testing/Make.para -nouse_subdir -modelsdir /projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev -targets 'TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50-tr12.run' < ../training-data/fullset.nets para-trickle-make: -terse option suppresses most messages. para-trickle-make: -verbose option generates more messages. para-trickle-make: -help option gives the full usage menu. para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-bmecluster-karplus-4666-6528755/README for more info. /projects/compbio/experiments/models.97/scripts/para-trickle-make -se2log -cluster bmecluster -manyids -max_jobs 10 -rmvdir -makefile /projects/compbio/experiments/protein-predict/predict-2nd/testing/Make.para -nouse_subdir -modelsdir /projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev -targets 'TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50-tr23.run' < ../training-data/fullset.nets para-trickle-make: -terse option suppresses most messages. para-trickle-make: -verbose option generates more messages. para-trickle-make: -help option gives the full usage menu. para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-bmecluster-karplus-4692-15973836/README for more info. /projects/compbio/experiments/models.97/scripts/para-trickle-make -se2log -cluster bmecluster -manyids -max_jobs 10 -rmvdir -makefile /projects/compbio/experiments/protein-predict/predict-2nd/testing/Make.para -nouse_subdir -modelsdir /projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev -targets 'TXXALIGN=str2uc-near-backbone-11-20 ALPHANAME=aa ALPHALIBFILE=combined-relabel.alphabet ALPHADIR=str2uc-near-backbone-11-20_rev ARCHITECTURE=Gstr2uc_near_backbone_11_20-9-17-5-20-3 DATASET=dunbrack-30pc-1763 mult50-tr31.run' < ../training-data/fullset.nets para-trickle-make: -terse option suppresses most messages. para-trickle-make: -verbose option generates more messages. para-trickle-make: -help option gives the full usage menu. para-trickle-make: Created joblist. See /projects/compbio/tmp/para-trickle-make-bmecluster-karplus-4758-51490985/README for more info. make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/predict-2nd/testing/str2uc-near-backbone-11-20_rev'