# command:# Prefix for input files set to 
# command:# Prefix for output files set to 
# command:# Seed set to 1147043388
# command:# Read 2 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/str.alphabet
# command:Unrecognized 1th alphabet way-back-11 for BackgroundProbs  that has no name
Unrecognized 1th alphabet near-backbone-11 for BackgroundProbs  that has no name
Unrecognized 1th alphabet rel_sa10 for BackgroundProbs  that has no name
Unrecognized 1th alphabet CB_burial_12_7 for BackgroundProbs  that has no name
Unrecognized 1th alphabet CB_burial_14_7 for BackgroundProbs  that has no name
Unrecognized 1th alphabet abs_sa7 for BackgroundProbs  that has no name
Unrecognized 1th alphabet alpha11 for BackgroundProbs  that has no name
Unrecognized 1th alphabet Bystroff for BackgroundProbs  that has no name
Unrecognized 1th alphabet chi1_3 for BackgroundProbs  that has no name
Unrecognized 1th alphabet dry_burial_6.5_7 for BackgroundProbs  that has no name
Unrecognized 1th alphabet dry_burial_8_7 for BackgroundProbs  that has no name
Unrecognized 1th alphabet dry_burial_12_7 for BackgroundProbs  that has no name
Unrecognized 1th alphabet DSSP for BackgroundProbs  that has no name
Unrecognized 1th alphabet EBGHSTL for BackgroundProbs  that has no name
Unrecognized 1th alphabet dssp_ehl2 for BackgroundProbs  that has no name
Unrecognized 1th alphabet STRIDE for BackgroundProbs  that has no name
Unrecognized 1th alphabet EBGHTL for BackgroundProbs  that has no name
Unrecognized 1th alphabet stride_ehl2 for BackgroundProbs  that has no name
Unrecognized 1th alphabet tco for BackgroundProbs  that has no name
Unrecognized 1th alphabet wet_burial_6.5_7 for BackgroundProbs  that has no name
Unrecognized 1th alphabet pb for BackgroundProbs  that has no name
Unrecognized 1th alphabet gamma_2 for BackgroundProbs  that has no name
Unrecognized 1th alphabet n_sep for BackgroundProbs  that has no name
Unrecognized 1th alphabet o_sep for BackgroundProbs  that has no name
Unrecognized 1th alphabet n_notor for BackgroundProbs  that has no name
Unrecognized 1th alphabet o_notor for BackgroundProbs  that has no name
Unrecognized 1th alphabet n_notor2 for BackgroundProbs  that has no name
Unrecognized 1th alphabet o_notor2 for BackgroundProbs  that has no name
# Read 0 alphabets and 3 BackgroundProbs from /projects/compbio/lib/alphabet/dunbrack-in-scop.backgrounds
# command:CPU_time= 0.002 sec, elapsed time= 0.047517 sec)
# command:Warning: Couldn't open file /networks/dunbrack-30pc-1763-t05-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-str2-from-empty.net or /networks/dunbrack-30pc-1763-t05-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-str2-from-empty.net.gz for input
Trying /networks/dunbrack-30pc-1763-t05-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-str2-from-empty.net
Error: Couldn't open file /networks/dunbrack-30pc-1763-t05-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-str2-from-empty.net or /networks/dunbrack-30pc-1763-t05-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-str2-from-empty.net.gz for input