InFilePrefix  /cse/faculty/karplus/dna/predict-2nd/testing/
OutFilePrefix /cse/faculty/karplus/dna/predict-2nd/testing/

ReadNeuralNet networks/aa-7-10-7-aa-empty.net
NameNet test-aa-7-10-7-aa-trained.net

ReadParams params/9-oct-01-fast-nosov
SetOverhang


# Note: the following includes read the training set(s),
# and, in doing so, reset the InFilePrefix

ReadToSet train
InFilePrefix  /cse/faculty/karplus/dna/predict-2nd/testing/training-data/
Include test.guide-guide

ReportNetQualityForCrossTrainTo quality-reports/test-aa-7-10-7-aa.quality

unfreeze 0
unfreeze 1

TrainNet 50
ReportNeuralNet networks/test-aa-7-10-7-aa-trained.net