PFRMAT SS
TARGET 2tscA_1:529
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded6-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    9	    6
METHOD	   11	    9
METHOD	    3	    8
METHOD	    7	    3 (1 EHL )
METHOD The input amino acid frequencies were determined from
METHOD alignment /projects/compbio/experiments/models.97/pdb/2t/2tscA/nostruct-align/2tscA.target98.a2m
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 13.5988
METHOD
MODEL 1
M C 0.65
K H 0.72
Q H 0.80
Y H 0.94
L H 0.98
E H 0.99
L H 0.99
M H 0.99
Q H 0.99
K H 0.97
V H 0.93
L H 0.82
D H 0.61
E C 0.54
G C 0.86
T C 0.81
Q C 0.68
K C 0.74
N C 0.83
D C 0.82
R C 0.73
T C 0.70
G C 0.68
T C 0.75
G C 0.68
T E 0.46
L E 0.61
S E 0.67
I E 0.61
F C 0.57
G C 0.78
H C 0.67
Q C 0.55
M E 0.45
R E 0.56
F E 0.50
N C 0.50
L C 0.56
Q C 0.74
D C 0.74
G C 0.83
F C 0.91
P C 0.87
L C 0.56
V E 0.53
T C 0.48
T C 0.72
K C 0.62
R E 0.47
C C 0.46
H E 0.43
L H 0.43
R H 0.68
S H 0.73
I H 0.80
I H 0.90
H H 0.93
E H 0.92
L H 0.91
L H 0.88
W H 0.82
F H 0.71
L H 0.56
Q C 0.76
G C 0.88
D C 0.83
T C 0.84
N C 0.77
I H 0.51
A H 0.60
Y H 0.57
L H 0.64
H H 0.63
E C 0.48
N C 0.76
N C 0.72
V C 0.76
T C 0.74
I C 0.60
W C 0.49
D H 0.66
E H 0.72
W H 0.71
A H 0.71
D H 0.72
E H 0.70
N H 0.50
G C 0.65
D C 0.69
L C 0.76
G C 0.87
P C 0.77
V C 0.66
Y C 0.66
G C 0.69
K C 0.62
Q C 0.57
W C 0.56
R C 0.54
A C 0.63
W C 0.72
P C 0.77
T C 0.85
P C 0.91
D C 0.84
G C 0.71
R C 0.76
H C 0.77
I C 0.72
D C 0.70
Q H 0.51
I H 0.78
T H 0.85
T H 0.87
V H 0.82
L H 0.78
N H 0.72
Q H 0.68
L H 0.50
K C 0.66
N C 0.79
D C 0.87
P C 0.55
D H 0.71
S H 0.80
R H 0.89
R H 0.90
I H 0.84
I H 0.75
V H 0.73
S H 0.72
A H 0.71
W H 0.57
N C 0.44
V C 0.49
G C 0.56
E C 0.60
L C 0.52
D C 0.54
K C 0.55
M C 0.58
A C 0.57
L C 0.59
A C 0.68
P C 0.73
C C 0.68
H C 0.63
A C 0.57
F C 0.57
F C 0.57
Q C 0.53
F C 0.51
Y C 0.55
V C 0.56
A C 0.59
D C 0.70
G C 0.68
K C 0.65
L C 0.61
S C 0.61
C C 0.58
Q C 0.55
L C 0.52
Y C 0.53
Q C 0.59
R C 0.73
S C 0.74
C C 0.73
D C 0.72
V C 0.56
F C 0.52
L C 0.50
G C 0.51
L C 0.55
P C 0.55
F C 0.55
N C 0.62
I C 0.66
A C 0.63
S C 0.58
Y C 0.47
A H 0.50
L H 0.64
L H 0.71
V H 0.70
H H 0.63
M H 0.57
M H 0.47
A C 0.52
Q C 0.50
Q C 0.54
C C 0.50
D C 0.50
L C 0.55
E C 0.65
V C 0.75
G C 0.86
D C 0.79
F C 0.57
V E 0.51
W E 0.47
T C 0.66
G C 0.85
G C 0.87
D C 0.70
T C 0.63
H C 0.64
L C 0.64
Y C 0.67
S C 0.60
N C 0.47
H C 0.48
M C 0.57
D C 0.61
Q C 0.67
T C 0.77
H C 0.80
L C 0.78
Q C 0.78
L C 0.71
S C 0.62
R C 0.62
E C 0.64
P C 0.69
R C 0.80
P C 0.82
L C 0.80
P C 0.73
K C 0.50
L H 0.51
I H 0.49
I H 0.52
K H 0.52
R C 0.53
A C 0.61
P C 0.63
E C 0.74
S C 0.68
I C 0.69
F C 0.72
D C 0.72
Y C 0.77
R C 0.74
F C 0.66
E C 0.62
D C 0.56
F C 0.61
E C 0.60
I C 0.55
E C 0.63
G C 0.68
Y C 0.61
D C 0.65
P C 0.62
H C 0.58
P C 0.55
G C 0.55
I C 0.50
K C 0.52
A C 0.63
P C 0.74
V C 0.78
A C 0.68
I H 0.58
X H 0.78
M H 0.93
K H 0.96
Q H 0.98
Y H 0.98
L H 0.99
E H 0.99
L H 0.98
M H 0.99
Q H 0.99
K H 0.98
V H 0.95
L H 0.85
D H 0.59
E C 0.59
G C 0.88
T C 0.87
Q C 0.68
K C 0.70
N C 0.88
D C 0.87
R C 0.78
T C 0.82
G C 0.76
T C 0.65
G C 0.49
T E 0.60
L E 0.59
S E 0.60
I E 0.60
F E 0.46
G C 0.64
H C 0.54
Q E 0.55
M E 0.68
R E 0.77
F E 0.61
N C 0.67
L C 0.67
Q C 0.69
D C 0.58
G C 0.71
F C 0.85
P C 0.85
L C 0.53
V E 0.44
T C 0.52
T C 0.65
K C 0.48
R E 0.47
C H 0.44
H H 0.56
L H 0.80
R H 0.91
S H 0.94
I H 0.92
I H 0.98
H H 0.99
E H 0.99
L H 0.98
L H 0.97
W H 0.95
F H 0.91
L H 0.77
Q C 0.67
G C 0.84
D C 0.83
T C 0.86
N C 0.72
I H 0.54
A H 0.58
Y H 0.56
L H 0.50
H C 0.47
E C 0.68
N C 0.91
N C 0.91
V C 0.61
T E 0.76
I E 0.85
W E 0.77
D E 0.55
E C 0.57
W C 0.79
A C 0.83
D C 0.87
E C 0.77
N C 0.78
G C 0.89
D C 0.82
L C 0.75
G C 0.86
P C 0.56
V H 0.55
Y H 0.52
G C 0.55
K C 0.50
Q H 0.44
W E 0.40
R E 0.49
A E 0.40
W C 0.70
P C 0.78
T C 0.74
P C 0.87
D C 0.88
G C 0.84
R C 0.88
H C 0.75
I H 0.62
D H 0.89
Q H 0.90
I H 0.97
T H 0.99
T H 0.99
V H 0.99
L H 0.99
N H 0.98
Q H 0.98
L H 0.93
K H 0.73
N C 0.64
D C 0.90
P C 0.88
D C 0.86
S C 0.83
R C 0.56
R E 0.70
I E 0.88
I E 0.92
V E 0.87
S E 0.76
A E 0.52
W C 0.81
N C 0.93
V C 0.77
G H 0.70
E H 0.59
L H 0.56
D H 0.72
K H 0.81
M H 0.63
A C 0.57
L C 0.74
A C 0.88
P C 0.89
C C 0.67
H C 0.45
A E 0.67
F E 0.81
F E 0.85
Q E 0.91
F E 0.94
Y E 0.93
V E 0.86
A E 0.60
D C 0.79
G C 0.87
K C 0.65
L C 0.49
S E 0.57
C E 0.75
Q E 0.83
L E 0.81
Y E 0.71
Q E 0.58
R C 0.55
S C 0.76
C C 0.77
D C 0.60
V C 0.48
F C 0.54
L C 0.54
G C 0.81
L C 0.92
P C 0.63
F H 0.74
N H 0.91
I H 0.98
A H 0.99
S H 0.99
Y H 0.99
A H 1.00
L H 1.00
L H 0.99
V H 0.99
H H 0.99
M H 0.98
M H 0.98
A H 0.97
Q H 0.94
Q H 0.78
C C 0.72
D C 0.84
L C 0.66
E C 0.56
V C 0.54
G C 0.53
D E 0.67
F E 0.87
V E 0.90
W E 0.89
T E 0.81
G E 0.51
G C 0.79
D C 0.66
T E 0.61
H E 0.69
L E 0.71
Y E 0.49
S H 0.74
N H 0.84
H H 0.86
M H 0.96
D H 0.98
Q H 0.97
T H 0.98
H H 0.97
L H 0.96
Q H 0.91
L H 0.76
S C 0.48
R C 0.58
E C 0.84
P C 0.92
R C 0.94
P C 0.88
L C 0.89
P C 0.83
K E 0.46
L E 0.69
I E 0.79
I E 0.64
K C 0.70
R C 0.87
A C 0.81
P C 0.60
E C 0.62
S C 0.55
I C 0.45
F H 0.44
D C 0.52
Y C 0.60
R C 0.57
F C 0.66
E C 0.75
D C 0.51
F E 0.74
E E 0.90
I E 0.91
E E 0.80
G E 0.60
Y C 0.69
D C 0.91
P C 0.89
H C 0.88
P C 0.76
G C 0.55
I E 0.49
K E 0.63
A E 0.70
P E 0.82
V E 0.90
A E 0.90
I E 0.82
- E 0.50
END