# command:# Read 4 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/hbonds.alphabet
# command:# Prefix for input files set to /cse/faculty/karplus/dna/predict-2nd/testing/
# command:# Prefix for output files set to /cse/faculty/karplus/dna/predict-2nd/testing/n_notor/
# command:# Neural network set to IDGaaH13-3-13-5-13-7-13-9-n_notor-empty.net
# command:# Neural network set to t2k-5631-IDGaaH13-3-13-7-13-9-13-11-n_notor-from-empty.net
# command:# Learning params read from params/16-dec-01-anneal
# command:# Initializing Weights for n_notor
# Initializing Bias for n_notor
# Initializing Gain for n_notor
# Initializing Weights for third_layer
# Initializing Bias for third_layer
# Initializing Gain for third_layer
# Initializing Weights for second_layer
# Initializing Bias for second_layer
# Initializing Gain for second_layer
# Initializing Weights for FirstLayer
# Initializing Bias for FirstLayer
# Initializing Gain for FirstLayer
# Network initialization done
# command:CPU_time= 0.014997 sec, elapsed time= 0.373356 sec)
# command:# command:# Prefix for input files set to /cse/faculty/karplus/dna/predict-2nd/testing/training-data/
# command:# reading script from file t2k-5631.t2k-thin90-n_notor
# command:CPU_time= 0.014997 sec, elapsed time= 0.38285 sec)
# command:# ReportNetQualityForCrossTrainTo quality-reports/t2k-5631-IDGaaH13-3-13-7-13-9-13-11-n_notor-from-empty.train ok.
# command:# Training Net with 5 estimation cycles.
# Network initialization done