# command:# Prefix for input files set to 
# command:# Prefix for output files set to 
# command:# Seed set to 1147563329
# command:# Read 5 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/two-spot-burial.alphabet
# command:Unrecognized 1th alphabet rel_sa10 for BackgroundProbs  that has no name
Unrecognized 1th alphabet CB_burial_12_7 for BackgroundProbs  that has no name
Unrecognized 1th alphabet CB_burial_14_7 for BackgroundProbs  that has no name
Unrecognized 1th alphabet abs_sa7 for BackgroundProbs  that has no name
Unrecognized 1th alphabet alpha11 for BackgroundProbs  that has no name
Unrecognized 1th alphabet Bystroff for BackgroundProbs  that has no name
Unrecognized 1th alphabet chi1_3 for BackgroundProbs  that has no name
Unrecognized 1th alphabet dry_burial_6.5_7 for BackgroundProbs  that has no name
Unrecognized 1th alphabet dry_burial_8_7 for BackgroundProbs  that has no name
Unrecognized 1th alphabet dry_burial_12_7 for BackgroundProbs  that has no name
Unrecognized 1th alphabet DSSP for BackgroundProbs  that has no name
Unrecognized 1th alphabet EBGHSTL for BackgroundProbs  that has no name
Unrecognized 1th alphabet str for BackgroundProbs  that has no name
Unrecognized 1th alphabet str2 for BackgroundProbs  that has no name
Unrecognized 1th alphabet dssp_ehl2 for BackgroundProbs  that has no name
Unrecognized 1th alphabet STRIDE for BackgroundProbs  that has no name
Unrecognized 1th alphabet EBGHTL for BackgroundProbs  that has no name
Unrecognized 1th alphabet stride_ehl2 for BackgroundProbs  that has no name
Unrecognized 1th alphabet tco for BackgroundProbs  that has no name
Unrecognized 1th alphabet wet_burial_6.5_7 for BackgroundProbs  that has no name
Unrecognized 1th alphabet pb for BackgroundProbs  that has no name
Unrecognized 1th alphabet gamma_2 for BackgroundProbs  that has no name
Unrecognized 1th alphabet n_sep for BackgroundProbs  that has no name
Unrecognized 1th alphabet o_sep for BackgroundProbs  that has no name
Unrecognized 1th alphabet n_notor for BackgroundProbs  that has no name
Unrecognized 1th alphabet o_notor for BackgroundProbs  that has no name
Unrecognized 1th alphabet n_notor2 for BackgroundProbs  that has no name
Unrecognized 1th alphabet o_notor2 for BackgroundProbs  that has no name
# Read 0 alphabets and 3 BackgroundProbs from /projects/compbio/lib/alphabet/dunbrack-in-scop.backgrounds
# command:CPU_time= 0.003999 sec, elapsed time= 0.047444 sec)
# command:# Neural network set to dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t1c2-near-backbone-11-from-empty.net
# command:# command:# Prefix for input files set to /cse/faculty/karplus/dna/predict-2nd/testing/training-data/
# command:# reading script from file dunbrack-in-scop-2005.t04-thin90-near-backbone-11
# Prefix for input files set to 
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/4u/4ubpA/nostruct-align/4ubpA.t04-thin90.a2m.gz
# 4ubpA.t04-thin90.a2m with 80 sequences, total weight= 5.08261 avg weight= 0.0635327 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/4u/4ubpA/info/4ubpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/4u/4ubpA/nostruct-align/4ubpA.t04-thin90.a2m.gz, have 100 columns in 1 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s0aA/nostruct-align/1s0aA.t04-thin90.a2m.gz
# 1s0aA.t04-thin90.a2m with 2258 sequences, total weight= 2258 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00916 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s0aA/info/1s0aA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s0aA/nostruct-align/1s0aA.t04-thin90.a2m.gz, have 528 columns in 2 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jnrA/nostruct-align/1jnrA.t04-thin90.a2m.gz
# 1jnrA.t04-thin90.a2m with 2126 sequences, total weight= 2126 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.93791 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jnrA/info/1jnrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jnrA/nostruct-align/1jnrA.t04-thin90.a2m.gz, have 1170 columns in 3 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jkeA/nostruct-align/1jkeA.t04-thin90.a2m.gz
# 1jkeA.t04-thin90.a2m with 117 sequences, total weight= 9.42106 avg weight= 0.0805219 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jkeA/info/1jkeA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jkeA/nostruct-align/1jkeA.t04-thin90.a2m.gz, have 1315 columns in 4 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iukA/nostruct-align/1iukA.t04-thin90.a2m.gz
# 1iukA.t04-thin90.a2m with 228 sequences, total weight= 99.9371 avg weight= 0.438321 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30157 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iukA/info/1iukA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iukA/nostruct-align/1iukA.t04-thin90.a2m.gz, have 1451 columns in 5 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2g/2gdm/nostruct-align/2gdm.t04-thin90.a2m.gz
# 2gdm.t04-thin90.a2m with 849 sequences, total weight= 849 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16989 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2g/2gdm/info/2gdm.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2g/2gdm/nostruct-align/2gdm.t04-thin90.a2m.gz, have 1604 columns in 6 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1ccwA/nostruct-align/1ccwA.t04-thin90.a2m.gz
# 1ccwA.t04-thin90.a2m with 237 sequences, total weight= 62.4091 avg weight= 0.26333 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30069 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1ccwA/info/1ccwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1ccwA/nostruct-align/1ccwA.t04-thin90.a2m.gz, have 1741 columns in 7 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1senA/nostruct-align/1senA.t04-thin90.a2m.gz
# 1senA.t04-thin90.a2m with 1657 sequences, total weight= 1657 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02539 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1senA/info/1senA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1senA/nostruct-align/1senA.t04-thin90.a2m.gz, have 1875 columns in 8 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mtpA/nostruct-align/1mtpA.t04-thin90.a2m.gz
# 1mtpA.t04-thin90.a2m with 443 sequences, total weight= 432.009 avg weight= 0.97519 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30043 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mtpA/info/1mtpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mtpA/nostruct-align/1mtpA.t04-thin90.a2m.gz, have 2195 columns in 9 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ro0A/nostruct-align/1ro0A.t04-thin90.a2m.gz
# 1ro0A.t04-thin90.a2m with 37 sequences, total weight= 37 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22366 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ro0A/info/1ro0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1ro0A/nostruct-align/1ro0A.t04-thin90.a2m.gz, have 2405 columns in 10 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dlwA/nostruct-align/1dlwA.t04-thin90.a2m.gz
# 1dlwA.t04-thin90.a2m with 82 sequences, total weight= 51.1132 avg weight= 0.623332 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dlwA/info/1dlwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dlwA/nostruct-align/1dlwA.t04-thin90.a2m.gz, have 2521 columns in 11 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o7sA/nostruct-align/1o7sA.t04-thin90.a2m.gz
# 1o7sA.t04-thin90.a2m with 1335 sequences, total weight= 14.8397 avg weight= 0.0111159 37 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o7sA/info/1o7sA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o7sA/nostruct-align/1o7sA.t04-thin90.a2m.gz, have 2633 columns in 12 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ixh/nostruct-align/1ixh.t04-thin90.a2m.gz
# 1ixh.t04-thin90.a2m with 300 sequences, total weight= 300 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26534 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ixh/info/1ixh.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ixh/nostruct-align/1ixh.t04-thin90.a2m.gz, have 2954 columns in 13 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pg4A/nostruct-align/1pg4A.t04-thin90.a2m.gz
# 1pg4A.t04-thin90.a2m with 2777 sequences, total weight= 2777 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14405 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pg4A/info/1pg4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pg4A/nostruct-align/1pg4A.t04-thin90.a2m.gz, have 3587 columns in 14 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kwfA/nostruct-align/1kwfA.t04-thin90.a2m.gz
# 1kwfA.t04-thin90.a2m with 58 sequences, total weight= 58 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14854 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kwfA/info/1kwfA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kwfA/nostruct-align/1kwfA.t04-thin90.a2m.gz, have 3950 columns in 15 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b5eA/nostruct-align/1b5eA.t04-thin90.a2m.gz
# 1b5eA.t04-thin90.a2m with 186 sequences, total weight= 45.8493 avg weight= 0.246502 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b5eA/info/1b5eA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1b5eA/nostruct-align/1b5eA.t04-thin90.a2m.gz, have 4191 columns in 16 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1km4A/nostruct-align/1km4A.t04-thin90.a2m.gz
# 1km4A.t04-thin90.a2m with 596 sequences, total weight= 596 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12991 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1km4A/info/1km4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1km4A/nostruct-align/1km4A.t04-thin90.a2m.gz, have 4403 columns in 17 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gd0A/nostruct-align/1gd0A.t04-thin90.a2m.gz
# 1gd0A.t04-thin90.a2m with 52 sequences, total weight= 32.1888 avg weight= 0.619015 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gd0A/info/1gd0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gd0A/nostruct-align/1gd0A.t04-thin90.a2m.gz, have 4521 columns in 18 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1ft5A/nostruct-align/1ft5A.t04-thin90.a2m.gz
# 1ft5A.t04-thin90.a2m with 148 sequences, total weight= 148 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.767287 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1ft5A/info/1ft5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1ft5A/nostruct-align/1ft5A.t04-thin90.a2m.gz, have 4732 columns in 19 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ro7A/nostruct-align/1ro7A.t04-thin90.a2m.gz
# 1ro7A.t04-thin90.a2m with 6 sequences, total weight= 3.49632 avg weight= 0.58272 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ro7A/info/1ro7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1ro7A/nostruct-align/1ro7A.t04-thin90.a2m.gz, have 4990 columns in 20 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uj2A/nostruct-align/1uj2A.t04-thin90.a2m.gz
# 1uj2A.t04-thin90.a2m with 1916 sequences, total weight= 1916 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.801691 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uj2A/info/1uj2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uj2A/nostruct-align/1uj2A.t04-thin90.a2m.gz, have 5203 columns in 21 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l7aA/nostruct-align/1l7aA.t04-thin90.a2m.gz
# 1l7aA.t04-thin90.a2m with 2319 sequences, total weight= 2319 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.791668 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l7aA/info/1l7aA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l7aA/nostruct-align/1l7aA.t04-thin90.a2m.gz, have 5521 columns in 22 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qgvA/nostruct-align/1qgvA.t04-thin90.a2m.gz
# 1qgvA.t04-thin90.a2m with 21 sequences, total weight= 6.98096 avg weight= 0.332427 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qgvA/info/1qgvA.stride-mixed.near-backbone-11
WARNING: skipping a, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qgvA/nostruct-align/1qgvA.t04-thin90.a2m.gz, have 5651 columns in 23 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o6vA/nostruct-align/1o6vA.t04-thin90.a2m.gz
# 1o6vA.t04-thin90.a2m with 2332 sequences, total weight= 2332 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.956701 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o6vA/info/1o6vA.stride-mixed.near-backbone-11
WARNING: skipping c, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o6vA/nostruct-align/1o6vA.t04-thin90.a2m.gz, have 6113 columns in 24 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fx2A/nostruct-align/1fx2A.t04-thin90.a2m.gz
# 1fx2A.t04-thin90.a2m with 619 sequences, total weight= 619 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12502 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fx2A/info/1fx2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fx2A/nostruct-align/1fx2A.t04-thin90.a2m.gz, have 6348 columns in 25 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gx3A/nostruct-align/1gx3A.t04-thin90.a2m.gz
# 1gx3A.t04-thin90.a2m with 70 sequences, total weight= 70 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23276 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gx3A/info/1gx3A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gx3A/nostruct-align/1gx3A.t04-thin90.a2m.gz, have 6624 columns in 26 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jhjA/nostruct-align/1jhjA.t04-thin90.a2m.gz
# 1jhjA.t04-thin90.a2m with 31 sequences, total weight= 20.2973 avg weight= 0.654751 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jhjA/info/1jhjA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jhjA/nostruct-align/1jhjA.t04-thin90.a2m.gz, have 6785 columns in 27 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1luqA/nostruct-align/1luqA.t04-thin90.a2m.gz
# 1luqA.t04-thin90.a2m with 10 sequences, total weight= 6.78549 avg weight= 0.678549 17 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1luqA/info/1luqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1luqA/nostruct-align/1luqA.t04-thin90.a2m.gz, have 6904 columns in 28 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bupA/nostruct-align/1bupA.t04-thin90.a2m.gz
# 1bupA.t04-thin90.a2m with 1003 sequences, total weight= 1003 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28732 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bupA/info/1bupA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bupA/nostruct-align/1bupA.t04-thin90.a2m.gz, have 7282 columns in 29 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ugpB/nostruct-align/1ugpB.t04-thin90.a2m.gz
# 1ugpB.t04-thin90.a2m with 25 sequences, total weight= 14.3546 avg weight= 0.574184 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ugpB/info/1ugpB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ugpB/nostruct-align/1ugpB.t04-thin90.a2m.gz, have 7508 columns in 30 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p6oA/nostruct-align/1p6oA.t04-thin90.a2m.gz
# 1p6oA.t04-thin90.a2m with 629 sequences, total weight= 629 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11819 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p6oA/info/1p6oA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p6oA/nostruct-align/1p6oA.t04-thin90.a2m.gz, have 7664 columns in 31 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lm4A/nostruct-align/1lm4A.t04-thin90.a2m.gz
# 1lm4A.t04-thin90.a2m with 232 sequences, total weight= 53.3508 avg weight= 0.22996 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30083 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lm4A/info/1lm4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lm4A/nostruct-align/1lm4A.t04-thin90.a2m.gz, have 7854 columns in 32 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i4uA/nostruct-align/1i4uA.t04-thin90.a2m.gz
# 1i4uA.t04-thin90.a2m with 357 sequences, total weight= 357 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.950118 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i4uA/info/1i4uA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i4uA/nostruct-align/1i4uA.t04-thin90.a2m.gz, have 8035 columns in 33 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1on2A/nostruct-align/1on2A.t04-thin90.a2m.gz
# 1on2A.t04-thin90.a2m with 461 sequences, total weight= 461 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.99043 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1on2A/info/1on2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1on2A/nostruct-align/1on2A.t04-thin90.a2m.gz, have 8170 columns in 34 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f3uA/nostruct-align/1f3uA.t04-thin90.a2m.gz
# 1f3uA.t04-thin90.a2m with 16 sequences, total weight= 12.6034 avg weight= 0.787712 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f3uA/info/1f3uA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f3uA/nostruct-align/1f3uA.t04-thin90.a2m.gz, have 8288 columns in 35 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m0wA/nostruct-align/1m0wA.t04-thin90.a2m.gz
# 1m0wA.t04-thin90.a2m with 39 sequences, total weight= 14.8671 avg weight= 0.381207 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m0wA/info/1m0wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m0wA/nostruct-align/1m0wA.t04-thin90.a2m.gz, have 8769 columns in 36 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ubkL/nostruct-align/1ubkL.t04-thin90.a2m.gz
# 1ubkL.t04-thin90.a2m with 361 sequences, total weight= 361 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29493 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ubkL/info/1ubkL.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ubkL/nostruct-align/1ubkL.t04-thin90.a2m.gz, have 9303 columns in 37 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uekA/nostruct-align/1uekA.t04-thin90.a2m.gz
# 1uekA.t04-thin90.a2m with 601 sequences, total weight= 601 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.986992 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uekA/info/1uekA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uekA/nostruct-align/1uekA.t04-thin90.a2m.gz, have 9571 columns in 38 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g2rA/nostruct-align/1g2rA.t04-thin90.a2m.gz
# 1g2rA.t04-thin90.a2m with 71 sequences, total weight= 44.4458 avg weight= 0.625997 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g2rA/info/1g2rA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g2rA/nostruct-align/1g2rA.t04-thin90.a2m.gz, have 9665 columns in 39 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s5dA/nostruct-align/1s5dA.t04-thin90.a2m.gz
# 1s5dA.t04-thin90.a2m with 34 sequences, total weight= 33.56 avg weight= 0.987058 19 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s5dA/info/1s5dA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s5dA/nostruct-align/1s5dA.t04-thin90.a2m.gz, have 9883 columns in 40 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m40A/nostruct-align/1m40A.t04-thin90.a2m.gz
# 1m40A.t04-thin90.a2m with 1080 sequences, total weight= 1080 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.932759 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m40A/info/1m40A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m40A/nostruct-align/1m40A.t04-thin90.a2m.gz, have 10146 columns in 41 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rb9/nostruct-align/1rb9.t04-thin90.a2m.gz
# 1rb9.t04-thin90.a2m with 140 sequences, total weight= 9.73272 avg weight= 0.0695194 42 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rb9/info/1rb9.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rb9/nostruct-align/1rb9.t04-thin90.a2m.gz, have 10198 columns in 42 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t7rA/nostruct-align/1t7rA.t04-thin90.a2m.gz
# 1t7rA.t04-thin90.a2m with 860 sequences, total weight= 860 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.989852 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t7rA/info/1t7rA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t7rA/nostruct-align/1t7rA.t04-thin90.a2m.gz, have 10448 columns in 43 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g5tA/nostruct-align/1g5tA.t04-thin90.a2m.gz
# 1g5tA.t04-thin90.a2m with 114 sequences, total weight= 16.4793 avg weight= 0.144555 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g5tA/info/1g5tA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g5tA/nostruct-align/1g5tA.t04-thin90.a2m.gz, have 10605 columns in 44 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pj5A/nostruct-align/1pj5A.t04-thin90.a2m.gz
# 1pj5A.t04-thin90.a2m with 2145 sequences, total weight= 2145 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.97474 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pj5A/info/1pj5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pj5A/nostruct-align/1pj5A.t04-thin90.a2m.gz, have 11432 columns in 45 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d2vA/nostruct-align/1d2vA.t04-thin90.a2m.gz
# 1d2vA.t04-thin90.a2m with 80 sequences, total weight= 20.9676 avg weight= 0.262095 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d2vA/info/1d2vA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d2vA/nostruct-align/1d2vA.t04-thin90.a2m.gz, have 11536 columns in 46 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1osyA/nostruct-align/1osyA.t04-thin90.a2m.gz
# 1osyA.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18111 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1osyA/info/1osyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1osyA/nostruct-align/1osyA.t04-thin90.a2m.gz, have 11650 columns in 47 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qu9A/nostruct-align/1qu9A.t04-thin90.a2m.gz
# 1qu9A.t04-thin90.a2m with 504 sequences, total weight= 289.877 avg weight= 0.575152 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30742 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qu9A/info/1qu9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qu9A/nostruct-align/1qu9A.t04-thin90.a2m.gz, have 11777 columns in 48 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sbp/nostruct-align/1sbp.t04-thin90.a2m.gz
# 1sbp.t04-thin90.a2m with 1408 sequences, total weight= 1408 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.82784 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sbp/info/1sbp.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sbp/nostruct-align/1sbp.t04-thin90.a2m.gz, have 12086 columns in 49 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rqwA/nostruct-align/1rqwA.t04-thin90.a2m.gz
# 1rqwA.t04-thin90.a2m with 149 sequences, total weight= 16.1557 avg weight= 0.108427 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rqwA/info/1rqwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rqwA/nostruct-align/1rqwA.t04-thin90.a2m.gz, have 12293 columns in 50 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pvgA/nostruct-align/1pvgA.t04-thin90.a2m.gz
# 1pvgA.t04-thin90.a2m with 729 sequences, total weight= 187.701 avg weight= 0.257477 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30808 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pvgA/info/1pvgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pvgA/nostruct-align/1pvgA.t04-thin90.a2m.gz, have 12671 columns in 51 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vkpA/nostruct-align/1vkpA.t04-thin90.a2m.gz
# 1vkpA.t04-thin90.a2m with 68 sequences, total weight= 21.6054 avg weight= 0.317727 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vkpA/info/1vkpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vkpA/nostruct-align/1vkpA.t04-thin90.a2m.gz, have 13036 columns in 52 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hbnC/nostruct-align/1hbnC.t04-thin90.a2m.gz
# 1hbnC.t04-thin90.a2m with 12 sequences, total weight= 2.98036 avg weight= 0.248364 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hbnC/info/1hbnC.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hbnC/nostruct-align/1hbnC.t04-thin90.a2m.gz, have 13283 columns in 53 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bm8/nostruct-align/1bm8.t04-thin90.a2m.gz
# 1bm8.t04-thin90.a2m with 30 sequences, total weight= 10.3741 avg weight= 0.345804 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bm8/info/1bm8.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bm8/nostruct-align/1bm8.t04-thin90.a2m.gz, have 13382 columns in 54 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2s/2spcA/nostruct-align/2spcA.t04-thin90.a2m.gz
# 2spcA.t04-thin90.a2m with 563 sequences, total weight= 563 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08351 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2s/2spcA/info/2spcA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2s/2spcA/nostruct-align/2spcA.t04-thin90.a2m.gz, have 13489 columns in 55 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1id0A/nostruct-align/1id0A.t04-thin90.a2m.gz
# 1id0A.t04-thin90.a2m with 2423 sequences, total weight= 106.16 avg weight= 0.0438136 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.33118 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1id0A/info/1id0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1id0A/nostruct-align/1id0A.t04-thin90.a2m.gz, have 13635 columns in 56 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rreA/nostruct-align/1rreA.t04-thin90.a2m.gz
# 1rreA.t04-thin90.a2m with 413 sequences, total weight= 280.738 avg weight= 0.679753 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30526 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rreA/info/1rreA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rreA/nostruct-align/1rreA.t04-thin90.a2m.gz, have 13817 columns in 57 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a12A/nostruct-align/1a12A.t04-thin90.a2m.gz
# 1a12A.t04-thin90.a2m with 322 sequences, total weight= 322 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.971297 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a12A/info/1a12A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a12A/nostruct-align/1a12A.t04-thin90.a2m.gz, have 14218 columns in 58 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1ht6A/nostruct-align/1ht6A.t04-thin90.a2m.gz
# 1ht6A.t04-thin90.a2m with 1262 sequences, total weight= 1262 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.983472 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1ht6A/info/1ht6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1ht6A/nostruct-align/1ht6A.t04-thin90.a2m.gz, have 14622 columns in 59 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2m/2mcm/nostruct-align/2mcm.t04-thin90.a2m.gz
# 2mcm.t04-thin90.a2m with 5 sequences, total weight= 3.566 avg weight= 0.7132 13 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2m/2mcm/info/2mcm.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2m/2mcm/nostruct-align/2mcm.t04-thin90.a2m.gz, have 14734 columns in 60 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1czpA/nostruct-align/1czpA.t04-thin90.a2m.gz
# 1czpA.t04-thin90.a2m with 683 sequences, total weight= 683 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22998 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1czpA/info/1czpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1czpA/nostruct-align/1czpA.t04-thin90.a2m.gz, have 14832 columns in 61 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ok7A/nostruct-align/1ok7A.t04-thin90.a2m.gz
# 1ok7A.t04-thin90.a2m with 219 sequences, total weight= 88.1028 avg weight= 0.402296 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30188 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ok7A/info/1ok7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ok7A/nostruct-align/1ok7A.t04-thin90.a2m.gz, have 15198 columns in 62 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ojhA/nostruct-align/1ojhA.t04-thin90.a2m.gz
# 1ojhA.t04-thin90.a2m with 3 sequences, total weight= 2.57236 avg weight= 0.857452 7 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ojhA/info/1ojhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ojhA/nostruct-align/1ojhA.t04-thin90.a2m.gz, have 15250 columns in 63 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pe1A/nostruct-align/1pe1A.t04-thin90.a2m.gz
# 1pe1A.t04-thin90.a2m with 291 sequences, total weight= 32.1139 avg weight= 0.110357 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pe1A/info/1pe1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pe1A/nostruct-align/1pe1A.t04-thin90.a2m.gz, have 15508 columns in 64 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2p/2pvbA/nostruct-align/2pvbA.t04-thin90.a2m.gz
# 2pvbA.t04-thin90.a2m with 964 sequences, total weight= 964 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17998 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2p/2pvbA/info/2pvbA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2p/2pvbA/nostruct-align/2pvbA.t04-thin90.a2m.gz, have 15615 columns in 65 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a2pA/nostruct-align/1a2pA.t04-thin90.a2m.gz
# 1a2pA.t04-thin90.a2m with 30 sequences, total weight= 8.26734 avg weight= 0.275578 25 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a2pA/info/1a2pA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a2pA/nostruct-align/1a2pA.t04-thin90.a2m.gz, have 15723 columns in 66 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jcdA/nostruct-align/1jcdA.t04-thin90.a2m.gz
# 1jcdA.t04-thin90.a2m with 6 sequences, total weight= 2.45615 avg weight= 0.409359 7 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jcdA/info/1jcdA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jcdA/nostruct-align/1jcdA.t04-thin90.a2m.gz, have 15773 columns in 67 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nu4A/nostruct-align/1nu4A.t04-thin90.a2m.gz
# 1nu4A.t04-thin90.a2m with 2434 sequences, total weight= 2434 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18044 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nu4A/info/1nu4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nu4A/nostruct-align/1nu4A.t04-thin90.a2m.gz, have 15864 columns in 68 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fn9A/nostruct-align/1fn9A.t04-thin90.a2m.gz
# 1fn9A.t04-thin90.a2m with 9 sequences, total weight= 8.39152 avg weight= 0.932391 13 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fn9A/info/1fn9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fn9A/nostruct-align/1fn9A.t04-thin90.a2m.gz, have 16229 columns in 69 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j77A/nostruct-align/1j77A.t04-thin90.a2m.gz
# 1j77A.t04-thin90.a2m with 91 sequences, total weight= 91 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26267 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j77A/info/1j77A.stride-mixed.near-backbone-11
WARNING: skipping f, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j77A/nostruct-align/1j77A.t04-thin90.a2m.gz, have 16428 columns in 70 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n1jB/nostruct-align/1n1jB.t04-thin90.a2m.gz
# 1n1jB.t04-thin90.a2m with 71 sequences, total weight= 16.9165 avg weight= 0.23826 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n1jB/info/1n1jB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n1jB/nostruct-align/1n1jB.t04-thin90.a2m.gz, have 16506 columns in 71 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1btkA/nostruct-align/1btkA.t04-thin90.a2m.gz
# 1btkA.t04-thin90.a2m with 92 sequences, total weight= 92 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18793 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1btkA/info/1btkA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1btkA/nostruct-align/1btkA.t04-thin90.a2m.gz, have 16666 columns in 72 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hxrA/nostruct-align/1hxrA.t04-thin90.a2m.gz
# 1hxrA.t04-thin90.a2m with 11 sequences, total weight= 9.0057 avg weight= 0.8187 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hxrA/info/1hxrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hxrA/nostruct-align/1hxrA.t04-thin90.a2m.gz, have 16773 columns in 73 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j27A/nostruct-align/1j27A.t04-thin90.a2m.gz
# 1j27A.t04-thin90.a2m with 27 sequences, total weight= 16.8656 avg weight= 0.624652 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j27A/info/1j27A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j27A/nostruct-align/1j27A.t04-thin90.a2m.gz, have 16871 columns in 74 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kq1A/nostruct-align/1kq1A.t04-thin90.a2m.gz
# 1kq1A.t04-thin90.a2m with 36 sequences, total weight= 5.15459 avg weight= 0.143183 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kq1A/info/1kq1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kq1A/nostruct-align/1kq1A.t04-thin90.a2m.gz, have 16931 columns in 75 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1ktgA/nostruct-align/1ktgA.t04-thin90.a2m.gz
# 1ktgA.t04-thin90.a2m with 1577 sequences, total weight= 1577 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.8871 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1ktgA/info/1ktgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1ktgA/nostruct-align/1ktgA.t04-thin90.a2m.gz, have 17068 columns in 76 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ockA/nostruct-align/1ockA.t04-thin90.a2m.gz
# 1ockA.t04-thin90.a2m with 619 sequences, total weight= 216.449 avg weight= 0.349675 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31171 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ockA/info/1ockA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ockA/nostruct-align/1ockA.t04-thin90.a2m.gz, have 17480 columns in 77 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g61A/nostruct-align/1g61A.t04-thin90.a2m.gz
# 1g61A.t04-thin90.a2m with 46 sequences, total weight= 12.2374 avg weight= 0.266029 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g61A/info/1g61A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g61A/nostruct-align/1g61A.t04-thin90.a2m.gz, have 17705 columns in 78 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f60B/nostruct-align/1f60B.t04-thin90.a2m.gz
# 1f60B.t04-thin90.a2m with 47 sequences, total weight= 6.47895 avg weight= 0.13785 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f60B/info/1f60B.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f60B/nostruct-align/1f60B.t04-thin90.a2m.gz, have 17795 columns in 79 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vcc/nostruct-align/1vcc.t04-thin90.a2m.gz
# 1vcc.t04-thin90.a2m with 13 sequences, total weight= 4.10853 avg weight= 0.31604 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vcc/info/1vcc.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vcc/nostruct-align/1vcc.t04-thin90.a2m.gz, have 17872 columns in 80 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vc4A/nostruct-align/1vc4A.t04-thin90.a2m.gz
# 1vc4A.t04-thin90.a2m with 439 sequences, total weight= 439 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22047 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vc4A/info/1vc4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vc4A/nostruct-align/1vc4A.t04-thin90.a2m.gz, have 18126 columns in 81 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oxdA/nostruct-align/1oxdA.t04-thin90.a2m.gz
# 1oxdA.t04-thin90.a2m with 60 sequences, total weight= 15.7015 avg weight= 0.261692 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oxdA/info/1oxdA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oxdA/nostruct-align/1oxdA.t04-thin90.a2m.gz, have 18352 columns in 82 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q7zA/nostruct-align/1q7zA.t04-thin90.a2m.gz
# 1q7zA.t04-thin90.a2m with 394 sequences, total weight= 266.407 avg weight= 0.67616 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30207 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q7zA/info/1q7zA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q7zA/nostruct-align/1q7zA.t04-thin90.a2m.gz, have 18911 columns in 83 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l6pA/nostruct-align/1l6pA.t04-thin90.a2m.gz
# 1l6pA.t04-thin90.a2m with 47 sequences, total weight= 18.658 avg weight= 0.39698 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l6pA/info/1l6pA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l6pA/nostruct-align/1l6pA.t04-thin90.a2m.gz, have 19032 columns in 84 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sjwA/nostruct-align/1sjwA.t04-thin90.a2m.gz
# 1sjwA.t04-thin90.a2m with 157 sequences, total weight= 157 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00149 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sjwA/info/1sjwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sjwA/nostruct-align/1sjwA.t04-thin90.a2m.gz, have 19174 columns in 85 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1llmC/nostruct-align/1llmC.t04-thin90.a2m.gz
# 1llmC.t04-thin90.a2m with 5083 sequences, total weight= 177.561 avg weight= 0.0349322 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32008 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1llmC/info/1llmC.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1llmC/nostruct-align/1llmC.t04-thin90.a2m.gz, have 19261 columns in 86 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1su8A/nostruct-align/1su8A.t04-thin90.a2m.gz
# 1su8A.t04-thin90.a2m with 89 sequences, total weight= 42.4872 avg weight= 0.477384 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1su8A/info/1su8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1su8A/nostruct-align/1su8A.t04-thin90.a2m.gz, have 19894 columns in 87 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mba/nostruct-align/1mba.t04-thin90.a2m.gz
# 1mba.t04-thin90.a2m with 742 sequences, total weight= 742 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21836 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mba/info/1mba.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mba/nostruct-align/1mba.t04-thin90.a2m.gz, have 20040 columns in 88 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pbjA/nostruct-align/1pbjA.t04-thin90.a2m.gz
# 1pbjA.t04-thin90.a2m with 1727 sequences, total weight= 1727 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09669 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pbjA/info/1pbjA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pbjA/nostruct-align/1pbjA.t04-thin90.a2m.gz, have 20160 columns in 89 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vm9A/nostruct-align/1vm9A.t04-thin90.a2m.gz
# 1vm9A.t04-thin90.a2m with 936 sequences, total weight= 936 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12769 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vm9A/info/1vm9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vm9A/nostruct-align/1vm9A.t04-thin90.a2m.gz, have 20269 columns in 90 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uscA/nostruct-align/1uscA.t04-thin90.a2m.gz
# 1uscA.t04-thin90.a2m with 358 sequences, total weight= 358 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16375 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uscA/info/1uscA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uscA/nostruct-align/1uscA.t04-thin90.a2m.gz, have 20447 columns in 91 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fg7A/nostruct-align/1fg7A.t04-thin90.a2m.gz
# 1fg7A.t04-thin90.a2m with 2127 sequences, total weight= 2127 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05158 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fg7A/info/1fg7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fg7A/nostruct-align/1fg7A.t04-thin90.a2m.gz, have 20801 columns in 92 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j2rA/nostruct-align/1j2rA.t04-thin90.a2m.gz
# 1j2rA.t04-thin90.a2m with 480 sequences, total weight= 480 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11329 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j2rA/info/1j2rA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j2rA/nostruct-align/1j2rA.t04-thin90.a2m.gz, have 20989 columns in 93 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pbyA/nostruct-align/1pbyA.t04-thin90.a2m.gz
# 1pbyA.t04-thin90.a2m with 4 sequences, total weight= 3.71504 avg weight= 0.92876 11 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pbyA/info/1pbyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pbyA/nostruct-align/1pbyA.t04-thin90.a2m.gz, have 21478 columns in 94 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mun/nostruct-align/1mun.t04-thin90.a2m.gz
# 1mun.t04-thin90.a2m with 556 sequences, total weight= 556 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12999 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mun/info/1mun.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mun/nostruct-align/1mun.t04-thin90.a2m.gz, have 21703 columns in 95 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qopB/nostruct-align/1qopB.t04-thin90.a2m.gz
# 1qopB.t04-thin90.a2m with 1089 sequences, total weight= 1089 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13689 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qopB/info/1qopB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qopB/nostruct-align/1qopB.t04-thin90.a2m.gz, have 22093 columns in 96 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54B/nostruct-align/1v54B.t04-thin90.a2m.gz
# 1v54B.t04-thin90.a2m with 481 sequences, total weight= 4.89322 avg weight= 0.010173 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54B/info/1v54B.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v54B/nostruct-align/1v54B.t04-thin90.a2m.gz, have 22320 columns in 97 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kjwA/nostruct-align/1kjwA.t04-thin90.a2m.gz
# 1kjwA.t04-thin90.a2m with 791 sequences, total weight= 791 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02163 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kjwA/info/1kjwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kjwA/nostruct-align/1kjwA.t04-thin90.a2m.gz, have 22612 columns in 98 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l3lA/nostruct-align/1l3lA.t04-thin90.a2m.gz
# 1l3lA.t04-thin90.a2m with 2264 sequences, total weight= 2264 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.970116 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l3lA/info/1l3lA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l3lA/nostruct-align/1l3lA.t04-thin90.a2m.gz, have 22845 columns in 99 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gwmA/nostruct-align/1gwmA.t04-thin90.a2m.gz
# 1gwmA.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.953406 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gwmA/info/1gwmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gwmA/nostruct-align/1gwmA.t04-thin90.a2m.gz, have 22998 columns in 100 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d0dA/nostruct-align/1d0dA.t04-thin90.a2m.gz
# 1d0dA.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20764 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d0dA/info/1d0dA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d0dA/nostruct-align/1d0dA.t04-thin90.a2m.gz, have 23058 columns in 101 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vjvA/nostruct-align/1vjvA.t04-thin90.a2m.gz
# 1vjvA.t04-thin90.a2m with 733 sequences, total weight= 733 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04734 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vjvA/info/1vjvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vjvA/nostruct-align/1vjvA.t04-thin90.a2m.gz, have 23425 columns in 102 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fvkA/nostruct-align/1fvkA.t04-thin90.a2m.gz
# 1fvkA.t04-thin90.a2m with 480 sequences, total weight= 480 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.92583 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fvkA/info/1fvkA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fvkA/nostruct-align/1fvkA.t04-thin90.a2m.gz, have 23613 columns in 103 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pmi/nostruct-align/1pmi.t04-thin90.a2m.gz
# 1pmi.t04-thin90.a2m with 124 sequences, total weight= 93.0794 avg weight= 0.75064 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pmi/info/1pmi.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pmi/nostruct-align/1pmi.t04-thin90.a2m.gz, have 24053 columns in 104 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ibyA/nostruct-align/1ibyA.t04-thin90.a2m.gz
# 1ibyA.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.602177 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ibyA/info/1ibyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ibyA/nostruct-align/1ibyA.t04-thin90.a2m.gz, have 24165 columns in 105 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o82A/nostruct-align/1o82A.t04-thin90.a2m.gz
# 1o82A.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.634682 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o82A/info/1o82A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o82A/nostruct-align/1o82A.t04-thin90.a2m.gz, have 24235 columns in 106 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uaiA/nostruct-align/1uaiA.t04-thin90.a2m.gz
# 1uaiA.t04-thin90.a2m with 33 sequences, total weight= 29.4297 avg weight= 0.89181 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uaiA/info/1uaiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uaiA/nostruct-align/1uaiA.t04-thin90.a2m.gz, have 24458 columns in 107 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1brt/nostruct-align/1brt.t04-thin90.a2m.gz
# 1brt.t04-thin90.a2m with 2380 sequences, total weight= 2380 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.807996 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1brt/info/1brt.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1brt/nostruct-align/1brt.t04-thin90.a2m.gz, have 24735 columns in 108 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nrjB/nostruct-align/1nrjB.t04-thin90.a2m.gz
# 1nrjB.t04-thin90.a2m with 1437 sequences, total weight= 1437 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28757 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nrjB/info/1nrjB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nrjB/nostruct-align/1nrjB.t04-thin90.a2m.gz, have 24926 columns in 109 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oqqA/nostruct-align/1oqqA.t04-thin90.a2m.gz
# 1oqqA.t04-thin90.a2m with 334 sequences, total weight= 334 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28647 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oqqA/info/1oqqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oqqA/nostruct-align/1oqqA.t04-thin90.a2m.gz, have 25032 columns in 110 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jr8A/nostruct-align/1jr8A.t04-thin90.a2m.gz
# 1jr8A.t04-thin90.a2m with 69 sequences, total weight= 69 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29497 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jr8A/info/1jr8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jr8A/nostruct-align/1jr8A.t04-thin90.a2m.gz, have 25137 columns in 111 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gvjA/nostruct-align/1gvjA.t04-thin90.a2m.gz
# 1gvjA.t04-thin90.a2m with 162 sequences, total weight= 44.5635 avg weight= 0.275084 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30057 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gvjA/info/1gvjA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gvjA/nostruct-align/1gvjA.t04-thin90.a2m.gz, have 25278 columns in 112 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d4tA/nostruct-align/1d4tA.t04-thin90.a2m.gz
# 1d4tA.t04-thin90.a2m with 432 sequences, total weight= 432 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2832 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d4tA/info/1d4tA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d4tA/nostruct-align/1d4tA.t04-thin90.a2m.gz, have 25382 columns in 113 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j1nA/nostruct-align/1j1nA.t04-thin90.a2m.gz
# 1j1nA.t04-thin90.a2m with 1235 sequences, total weight= 1235 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.854801 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j1nA/info/1j1nA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j1nA/nostruct-align/1j1nA.t04-thin90.a2m.gz, have 25874 columns in 114 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tfzA/nostruct-align/1tfzA.t04-thin90.a2m.gz
# 1tfzA.t04-thin90.a2m with 840 sequences, total weight= 840 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08056 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tfzA/info/1tfzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tfzA/nostruct-align/1tfzA.t04-thin90.a2m.gz, have 26238 columns in 115 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eexA/nostruct-align/1eexA.t04-thin90.a2m.gz
# 1eexA.t04-thin90.a2m with 9 sequences, total weight= 2.81732 avg weight= 0.313036 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eexA/info/1eexA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eexA/nostruct-align/1eexA.t04-thin90.a2m.gz, have 26789 columns in 116 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mg7A/nostruct-align/1mg7A.t04-thin90.a2m.gz
# 1mg7A.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.809779 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mg7A/info/1mg7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mg7A/nostruct-align/1mg7A.t04-thin90.a2m.gz, have 27140 columns in 117 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1us5A/nostruct-align/1us5A.t04-thin90.a2m.gz
# 1us5A.t04-thin90.a2m with 2329 sequences, total weight= 2329 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.806009 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1us5A/info/1us5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1us5A/nostruct-align/1us5A.t04-thin90.a2m.gz, have 27437 columns in 118 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1atg/nostruct-align/1atg.t04-thin90.a2m.gz
# 1atg.t04-thin90.a2m with 1533 sequences, total weight= 1533 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.830639 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1atg/info/1atg.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1atg/nostruct-align/1atg.t04-thin90.a2m.gz, have 27668 columns in 119 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f74A/nostruct-align/1f74A.t04-thin90.a2m.gz
# 1f74A.t04-thin90.a2m with 443 sequences, total weight= 443 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28296 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f74A/info/1f74A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f74A/nostruct-align/1f74A.t04-thin90.a2m.gz, have 27961 columns in 120 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mtyG/nostruct-align/1mtyG.t04-thin90.a2m.gz
# 1mtyG.t04-thin90.a2m with 5 sequences, total weight= 3.64262 avg weight= 0.728523 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mtyG/info/1mtyG.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mtyG/nostruct-align/1mtyG.t04-thin90.a2m.gz, have 28123 columns in 121 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n62B/nostruct-align/1n62B.t04-thin90.a2m.gz
# 1n62B.t04-thin90.a2m with 421 sequences, total weight= 339.897 avg weight= 0.807357 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30198 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n62B/info/1n62B.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n62B/nostruct-align/1n62B.t04-thin90.a2m.gz, have 28927 columns in 122 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1ntvA/nostruct-align/1ntvA.t04-thin90.a2m.gz
# 1ntvA.t04-thin90.a2m with 138 sequences, total weight= 138 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09721 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1ntvA/info/1ntvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1ntvA/nostruct-align/1ntvA.t04-thin90.a2m.gz, have 29079 columns in 123 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gxyA/nostruct-align/1gxyA.t04-thin90.a2m.gz
# 1gxyA.t04-thin90.a2m with 39 sequences, total weight= 9.57365 avg weight= 0.245478 25 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gxyA/info/1gxyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gxyA/nostruct-align/1gxyA.t04-thin90.a2m.gz, have 29302 columns in 124 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f2tA/nostruct-align/1f2tA.t04-thin90.a2m.gz
# 1f2tA.t04-thin90.a2m with 2301 sequences, total weight= 2301 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18876 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f2tA/info/1f2tA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f2tA/nostruct-align/1f2tA.t04-thin90.a2m.gz, have 29447 columns in 125 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hh8A/nostruct-align/1hh8A.t04-thin90.a2m.gz
# 1hh8A.t04-thin90.a2m with 3127 sequences, total weight= 3127 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.808496 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hh8A/info/1hh8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hh8A/nostruct-align/1hh8A.t04-thin90.a2m.gz, have 29639 columns in 126 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uylA/nostruct-align/1uylA.t04-thin90.a2m.gz
# 1uylA.t04-thin90.a2m with 297 sequences, total weight= 52.5518 avg weight= 0.176942 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30046 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uylA/info/1uylA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uylA/nostruct-align/1uylA.t04-thin90.a2m.gz, have 29846 columns in 127 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s29A/nostruct-align/1s29A.t04-thin90.a2m.gz
# 1s29A.t04-thin90.a2m with 81 sequences, total weight= 27.2436 avg weight= 0.336341 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s29A/info/1s29A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s29A/nostruct-align/1s29A.t04-thin90.a2m.gz, have 29938 columns in 128 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kyhA/nostruct-align/1kyhA.t04-thin90.a2m.gz
# 1kyhA.t04-thin90.a2m with 1268 sequences, total weight= 1268 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.949749 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kyhA/info/1kyhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kyhA/nostruct-align/1kyhA.t04-thin90.a2m.gz, have 30206 columns in 129 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nu0A/nostruct-align/1nu0A.t04-thin90.a2m.gz
# 1nu0A.t04-thin90.a2m with 158 sequences, total weight= 41.5328 avg weight= 0.262866 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30038 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nu0A/info/1nu0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nu0A/nostruct-align/1nu0A.t04-thin90.a2m.gz, have 30337 columns in 130 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dciA/nostruct-align/1dciA.t04-thin90.a2m.gz
# 1dciA.t04-thin90.a2m with 1292 sequences, total weight= 1292 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16386 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dciA/info/1dciA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dciA/nostruct-align/1dciA.t04-thin90.a2m.gz, have 30612 columns in 131 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k6kA/nostruct-align/1k6kA.t04-thin90.a2m.gz
# 1k6kA.t04-thin90.a2m with 171 sequences, total weight= 142.294 avg weight= 0.832127 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30107 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k6kA/info/1k6kA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k6kA/nostruct-align/1k6kA.t04-thin90.a2m.gz, have 30754 columns in 132 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ezgA/nostruct-align/1ezgA.t04-thin90.a2m.gz
# 1ezgA.t04-thin90.a2m with 15 sequences, total weight= 2.6641 avg weight= 0.177607 13 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ezgA/info/1ezgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ezgA/nostruct-align/1ezgA.t04-thin90.a2m.gz, have 30836 columns in 133 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1woqA/nostruct-align/1woqA.t04-thin90.a2m.gz
# 1woqA.t04-thin90.a2m with 766 sequences, total weight= 766 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12253 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1woqA/info/1woqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1woqA/nostruct-align/1woqA.t04-thin90.a2m.gz, have 31089 columns in 134 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n62C/nostruct-align/1n62C.t04-thin90.a2m.gz
# 1n62C.t04-thin90.a2m with 214 sequences, total weight= 121.313 avg weight= 0.566884 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30222 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n62C/info/1n62C.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n62C/nostruct-align/1n62C.t04-thin90.a2m.gz, have 31375 columns in 135 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lv7A/nostruct-align/1lv7A.t04-thin90.a2m.gz
# 1lv7A.t04-thin90.a2m with 2256 sequences, total weight= 2256 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15125 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lv7A/info/1lv7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lv7A/nostruct-align/1lv7A.t04-thin90.a2m.gz, have 31626 columns in 136 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t3iA/nostruct-align/1t3iA.t04-thin90.a2m.gz
# 1t3iA.t04-thin90.a2m with 2176 sequences, total weight= 2176 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.970128 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t3iA/info/1t3iA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t3iA/nostruct-align/1t3iA.t04-thin90.a2m.gz, have 32032 columns in 137 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s9uA/nostruct-align/1s9uA.t04-thin90.a2m.gz
# 1s9uA.t04-thin90.a2m with 127 sequences, total weight= 127 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07429 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s9uA/info/1s9uA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s9uA/nostruct-align/1s9uA.t04-thin90.a2m.gz, have 32233 columns in 138 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2p/2por/nostruct-align/2por.t04-thin90.a2m.gz
# 2por.t04-thin90.a2m with 445 sequences, total weight= 445 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23874 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2p/2por/info/2por.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2p/2por/nostruct-align/2por.t04-thin90.a2m.gz, have 32534 columns in 139 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eluA/nostruct-align/1eluA.t04-thin90.a2m.gz
# 1eluA.t04-thin90.a2m with 2188 sequences, total weight= 2188 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.973012 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eluA/info/1eluA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eluA/nostruct-align/1eluA.t04-thin90.a2m.gz, have 32915 columns in 140 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tzvA/nostruct-align/1tzvA.t04-thin90.a2m.gz
# 1tzvA.t04-thin90.a2m with 272 sequences, total weight= 272 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24018 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tzvA/info/1tzvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tzvA/nostruct-align/1tzvA.t04-thin90.a2m.gz, have 33056 columns in 141 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j8bA/nostruct-align/1j8bA.t04-thin90.a2m.gz
# 1j8bA.t04-thin90.a2m with 114 sequences, total weight= 25.3339 avg weight= 0.222227 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j8bA/info/1j8bA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j8bA/nostruct-align/1j8bA.t04-thin90.a2m.gz, have 33148 columns in 142 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n2eA/nostruct-align/1n2eA.t04-thin90.a2m.gz
# 1n2eA.t04-thin90.a2m with 130 sequences, total weight= 14.7948 avg weight= 0.113806 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n2eA/info/1n2eA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n2eA/nostruct-align/1n2eA.t04-thin90.a2m.gz, have 33436 columns in 143 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nuyA/nostruct-align/1nuyA.t04-thin90.a2m.gz
# 1nuyA.t04-thin90.a2m with 551 sequences, total weight= 551 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17133 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nuyA/info/1nuyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nuyA/nostruct-align/1nuyA.t04-thin90.a2m.gz, have 33764 columns in 144 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nscA/nostruct-align/1nscA.t04-thin90.a2m.gz
# 1nscA.t04-thin90.a2m with 50 sequences, total weight= 5.6402 avg weight= 0.112804 20 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nscA/info/1nscA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nscA/nostruct-align/1nscA.t04-thin90.a2m.gz, have 34154 columns in 145 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k0mA/nostruct-align/1k0mA.t04-thin90.a2m.gz
# 1k0mA.t04-thin90.a2m with 1682 sequences, total weight= 1682 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.942169 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k0mA/info/1k0mA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k0mA/nostruct-align/1k0mA.t04-thin90.a2m.gz, have 34389 columns in 146 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hx0A/nostruct-align/1hx0A.t04-thin90.a2m.gz
# 1hx0A.t04-thin90.a2m with 1257 sequences, total weight= 1257 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.979977 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hx0A/info/1hx0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hx0A/nostruct-align/1hx0A.t04-thin90.a2m.gz, have 34885 columns in 147 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j2lA/nostruct-align/1j2lA.t04-thin90.a2m.gz
# 1j2lA.t04-thin90.a2m with 173 sequences, total weight= 9.94955 avg weight= 0.0575118 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j2lA/info/1j2lA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j2lA/nostruct-align/1j2lA.t04-thin90.a2m.gz, have 34953 columns in 148 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dfmA/nostruct-align/1dfmA.t04-thin90.a2m.gz
# 1dfmA.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00027 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dfmA/info/1dfmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dfmA/nostruct-align/1dfmA.t04-thin90.a2m.gz, have 35176 columns in 149 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ekgA/nostruct-align/1ekgA.t04-thin90.a2m.gz
# 1ekgA.t04-thin90.a2m with 56 sequences, total weight= 22.8859 avg weight= 0.408677 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ekgA/info/1ekgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ekgA/nostruct-align/1ekgA.t04-thin90.a2m.gz, have 35295 columns in 150 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v33A/nostruct-align/1v33A.t04-thin90.a2m.gz
# 1v33A.t04-thin90.a2m with 74 sequences, total weight= 74 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19461 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v33A/info/1v33A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v33A/nostruct-align/1v33A.t04-thin90.a2m.gz, have 35641 columns in 151 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1es5A/nostruct-align/1es5A.t04-thin90.a2m.gz
# 1es5A.t04-thin90.a2m with 628 sequences, total weight= 628 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03932 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1es5A/info/1es5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1es5A/nostruct-align/1es5A.t04-thin90.a2m.gz, have 35901 columns in 152 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b9mA/nostruct-align/1b9mA.t04-thin90.a2m.gz
# 1b9mA.t04-thin90.a2m with 2252 sequences, total weight= 2252 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05684 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b9mA/info/1b9mA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1b9mA/nostruct-align/1b9mA.t04-thin90.a2m.gz, have 36159 columns in 153 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k55A/nostruct-align/1k55A.t04-thin90.a2m.gz
# 1k55A.t04-thin90.a2m with 947 sequences, total weight= 947 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09901 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k55A/info/1k55A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k55A/nostruct-align/1k55A.t04-thin90.a2m.gz, have 36404 columns in 154 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m7yA/nostruct-align/1m7yA.t04-thin90.a2m.gz
# 1m7yA.t04-thin90.a2m with 2114 sequences, total weight= 2114 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.982592 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m7yA/info/1m7yA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m7yA/nostruct-align/1m7yA.t04-thin90.a2m.gz, have 36828 columns in 155 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uk8A/nostruct-align/1uk8A.t04-thin90.a2m.gz
# 1uk8A.t04-thin90.a2m with 2345 sequences, total weight= 2345 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.846117 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uk8A/info/1uk8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uk8A/nostruct-align/1uk8A.t04-thin90.a2m.gz, have 37099 columns in 156 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hz6A/nostruct-align/1hz6A.t04-thin90.a2m.gz
# 1hz6A.t04-thin90.a2m with 9 sequences, total weight= 3.21774 avg weight= 0.357526 11 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hz6A/info/1hz6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hz6A/nostruct-align/1hz6A.t04-thin90.a2m.gz, have 37166 columns in 157 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qauA/nostruct-align/1qauA.t04-thin90.a2m.gz
# 1qauA.t04-thin90.a2m with 1072 sequences, total weight= 1072 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06897 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qauA/info/1qauA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qauA/nostruct-align/1qauA.t04-thin90.a2m.gz, have 37278 columns in 158 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g8eA/nostruct-align/1g8eA.t04-thin90.a2m.gz
# 1g8eA.t04-thin90.a2m with 18 sequences, total weight= 5.92793 avg weight= 0.329329 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g8eA/info/1g8eA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g8eA/nostruct-align/1g8eA.t04-thin90.a2m.gz, have 37376 columns in 159 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1ne2A/nostruct-align/1ne2A.t04-thin90.a2m.gz
# 1ne2A.t04-thin90.a2m with 2357 sequences, total weight= 2357 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.844163 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1ne2A/info/1ne2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1ne2A/nostruct-align/1ne2A.t04-thin90.a2m.gz, have 37552 columns in 160 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uv7A/nostruct-align/1uv7A.t04-thin90.a2m.gz
# 1uv7A.t04-thin90.a2m with 14 sequences, total weight= 7.80233 avg weight= 0.55731 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uv7A/info/1uv7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uv7A/nostruct-align/1uv7A.t04-thin90.a2m.gz, have 37628 columns in 161 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e6cA/nostruct-align/1e6cA.t04-thin90.a2m.gz
# 1e6cA.t04-thin90.a2m with 2001 sequences, total weight= 2001 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.925812 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e6cA/info/1e6cA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e6cA/nostruct-align/1e6cA.t04-thin90.a2m.gz, have 37798 columns in 162 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sluA/nostruct-align/1sluA.t04-thin90.a2m.gz
# 1sluA.t04-thin90.a2m with 12 sequences, total weight= 5.14326 avg weight= 0.428605 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sluA/info/1sluA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sluA/nostruct-align/1sluA.t04-thin90.a2m.gz, have 37929 columns in 163 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ooyA/nostruct-align/1ooyA.t04-thin90.a2m.gz
# 1ooyA.t04-thin90.a2m with 401 sequences, total weight= 401 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26245 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ooyA/info/1ooyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ooyA/nostruct-align/1ooyA.t04-thin90.a2m.gz, have 38392 columns in 164 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ojrA/nostruct-align/1ojrA.t04-thin90.a2m.gz
# 1ojrA.t04-thin90.a2m with 324 sequences, total weight= 324 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09479 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ojrA/info/1ojrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ojrA/nostruct-align/1ojrA.t04-thin90.a2m.gz, have 38666 columns in 165 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bs0A/nostruct-align/1bs0A.t04-thin90.a2m.gz
# 1bs0A.t04-thin90.a2m with 2158 sequences, total weight= 2158 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07649 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bs0A/info/1bs0A.stride-mixed.near-backbone-11
WARNING: skipping e, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bs0A/nostruct-align/1bs0A.t04-thin90.a2m.gz, have 39048 columns in 166 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vh5A/nostruct-align/1vh5A.t04-thin90.a2m.gz
# 1vh5A.t04-thin90.a2m with 587 sequences, total weight= 587 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.927908 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vh5A/info/1vh5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vh5A/nostruct-align/1vh5A.t04-thin90.a2m.gz, have 39186 columns in 167 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sbxA/nostruct-align/1sbxA.t04-thin90.a2m.gz
# 1sbxA.t04-thin90.a2m with 33 sequences, total weight= 8.33539 avg weight= 0.252588 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sbxA/info/1sbxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sbxA/nostruct-align/1sbxA.t04-thin90.a2m.gz, have 39292 columns in 168 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vljA/nostruct-align/1vljA.t04-thin90.a2m.gz
# 1vljA.t04-thin90.a2m with 714 sequences, total weight= 714 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16826 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vljA/info/1vljA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vljA/nostruct-align/1vljA.t04-thin90.a2m.gz, have 39690 columns in 169 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3s/3sil/nostruct-align/3sil.t04-thin90.a2m.gz
# 3sil.t04-thin90.a2m with 320 sequences, total weight= 320 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.842284 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3s/3sil/info/3sil.stride-mixed.near-backbone-11
WARNING: skipping b, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/3s/3sil/nostruct-align/3sil.t04-thin90.a2m.gz, have 40068 columns in 170 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cv8/nostruct-align/1cv8.t04-thin90.a2m.gz
# 1cv8.t04-thin90.a2m with 5 sequences, total weight= 2.72305 avg weight= 0.54461 10 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cv8/info/1cv8.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cv8/nostruct-align/1cv8.t04-thin90.a2m.gz, have 40241 columns in 171 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h4pA/nostruct-align/1h4pA.t04-thin90.a2m.gz
# 1h4pA.t04-thin90.a2m with 1347 sequences, total weight= 1347 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.912 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h4pA/info/1h4pA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h4pA/nostruct-align/1h4pA.t04-thin90.a2m.gz, have 40649 columns in 172 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j3wA/nostruct-align/1j3wA.t04-thin90.a2m.gz
# 1j3wA.t04-thin90.a2m with 7 sequences, total weight= 6.61148 avg weight= 0.944497 14 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j3wA/info/1j3wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j3wA/nostruct-align/1j3wA.t04-thin90.a2m.gz, have 40783 columns in 173 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hbnB/nostruct-align/1hbnB.t04-thin90.a2m.gz
# 1hbnB.t04-thin90.a2m with 15 sequences, total weight= 3.30814 avg weight= 0.220543 14 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hbnB/info/1hbnB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hbnB/nostruct-align/1hbnB.t04-thin90.a2m.gz, have 41225 columns in 174 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dmhA/nostruct-align/1dmhA.t04-thin90.a2m.gz
# 1dmhA.t04-thin90.a2m with 231 sequences, total weight= 147.903 avg weight= 0.640274 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30083 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dmhA/info/1dmhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dmhA/nostruct-align/1dmhA.t04-thin90.a2m.gz, have 41534 columns in 175 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qy1A/nostruct-align/1qy1A.t04-thin90.a2m.gz
# 1qy1A.t04-thin90.a2m with 304 sequences, total weight= 304 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.982737 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qy1A/info/1qy1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qy1A/nostruct-align/1qy1A.t04-thin90.a2m.gz, have 41691 columns in 176 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xffA/nostruct-align/1xffA.t04-thin90.a2m.gz
# 1xffA.t04-thin90.a2m with 935 sequences, total weight= 935 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1751 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xffA/info/1xffA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xffA/nostruct-align/1xffA.t04-thin90.a2m.gz, have 41929 columns in 177 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1el5A/nostruct-align/1el5A.t04-thin90.a2m.gz
# 1el5A.t04-thin90.a2m with 2283 sequences, total weight= 2283 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.783125 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1el5A/info/1el5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1el5A/nostruct-align/1el5A.t04-thin90.a2m.gz, have 42314 columns in 178 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gv9A/nostruct-align/1gv9A.t04-thin90.a2m.gz
# 1gv9A.t04-thin90.a2m with 311 sequences, total weight= 311 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27441 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gv9A/info/1gv9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gv9A/nostruct-align/1gv9A.t04-thin90.a2m.gz, have 42537 columns in 179 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1koe/nostruct-align/1koe.t04-thin90.a2m.gz
# 1koe.t04-thin90.a2m with 29 sequences, total weight= 17.4512 avg weight= 0.601764 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1koe/info/1koe.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1koe/nostruct-align/1koe.t04-thin90.a2m.gz, have 42709 columns in 180 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mfgA/nostruct-align/1mfgA.t04-thin90.a2m.gz
# 1mfgA.t04-thin90.a2m with 948 sequences, total weight= 948 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20197 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mfgA/info/1mfgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mfgA/nostruct-align/1mfgA.t04-thin90.a2m.gz, have 42804 columns in 181 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pv5A/nostruct-align/1pv5A.t04-thin90.a2m.gz
# 1pv5A.t04-thin90.a2m with 24 sequences, total weight= 24 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27995 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pv5A/info/1pv5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pv5A/nostruct-align/1pv5A.t04-thin90.a2m.gz, have 43065 columns in 182 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1svsA/nostruct-align/1svsA.t04-thin90.a2m.gz
# 1svsA.t04-thin90.a2m with 593 sequences, total weight= 155.102 avg weight= 0.261554 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30321 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1svsA/info/1svsA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1svsA/nostruct-align/1svsA.t04-thin90.a2m.gz, have 43381 columns in 183 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dfuP/nostruct-align/1dfuP.t04-thin90.a2m.gz
# 1dfuP.t04-thin90.a2m with 114 sequences, total weight= 31.0506 avg weight= 0.272373 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dfuP/info/1dfuP.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dfuP/nostruct-align/1dfuP.t04-thin90.a2m.gz, have 43475 columns in 184 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gnuA/nostruct-align/1gnuA.t04-thin90.a2m.gz
# 1gnuA.t04-thin90.a2m with 48 sequences, total weight= 8.56654 avg weight= 0.17847 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gnuA/info/1gnuA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gnuA/nostruct-align/1gnuA.t04-thin90.a2m.gz, have 43592 columns in 185 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tjyA/nostruct-align/1tjyA.t04-thin90.a2m.gz
# 1tjyA.t04-thin90.a2m with 1558 sequences, total weight= 1558 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.967593 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tjyA/info/1tjyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tjyA/nostruct-align/1tjyA.t04-thin90.a2m.gz, have 43908 columns in 186 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vj2A/nostruct-align/1vj2A.t04-thin90.a2m.gz
# 1vj2A.t04-thin90.a2m with 1315 sequences, total weight= 1315 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.776597 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vj2A/info/1vj2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vj2A/nostruct-align/1vj2A.t04-thin90.a2m.gz, have 44022 columns in 187 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qwrA/nostruct-align/1qwrA.t04-thin90.a2m.gz
# 1qwrA.t04-thin90.a2m with 126 sequences, total weight= 126 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29805 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qwrA/info/1qwrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qwrA/nostruct-align/1qwrA.t04-thin90.a2m.gz, have 44337 columns in 188 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1smoA/nostruct-align/1smoA.t04-thin90.a2m.gz
# 1smoA.t04-thin90.a2m with 1747 sequences, total weight= 9.07749 avg weight= 0.00519605 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1smoA/info/1smoA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1smoA/nostruct-align/1smoA.t04-thin90.a2m.gz, have 44450 columns in 189 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gcqC/nostruct-align/1gcqC.t04-thin90.a2m.gz
# 1gcqC.t04-thin90.a2m with 71 sequences, total weight= 26.0495 avg weight= 0.366895 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gcqC/info/1gcqC.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gcqC/nostruct-align/1gcqC.t04-thin90.a2m.gz, have 44519 columns in 190 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uwkA/nostruct-align/1uwkA.t04-thin90.a2m.gz
# 1uwkA.t04-thin90.a2m with 61 sequences, total weight= 6.32777 avg weight= 0.103734 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uwkA/info/1uwkA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uwkA/nostruct-align/1uwkA.t04-thin90.a2m.gz, have 45073 columns in 191 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nr0A/nostruct-align/1nr0A.t04-thin90.a2m.gz
# 1nr0A.t04-thin90.a2m with 1837 sequences, total weight= 1837 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.896795 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nr0A/info/1nr0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nr0A/nostruct-align/1nr0A.t04-thin90.a2m.gz, have 45683 columns in 192 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vyrA/nostruct-align/1vyrA.t04-thin90.a2m.gz
# 1vyrA.t04-thin90.a2m with 573 sequences, total weight= 284.033 avg weight= 0.495694 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30737 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vyrA/info/1vyrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vyrA/nostruct-align/1vyrA.t04-thin90.a2m.gz, have 46046 columns in 193 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nlnA/nostruct-align/1nlnA.t04-thin90.a2m.gz
# 1nlnA.t04-thin90.a2m with 27 sequences, total weight= 5.20789 avg weight= 0.192885 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nlnA/info/1nlnA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nlnA/nostruct-align/1nlnA.t04-thin90.a2m.gz, have 46249 columns in 194 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oi7A/nostruct-align/1oi7A.t04-thin90.a2m.gz
# 1oi7A.t04-thin90.a2m with 335 sequences, total weight= 124.169 avg weight= 0.370655 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3027 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oi7A/info/1oi7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oi7A/nostruct-align/1oi7A.t04-thin90.a2m.gz, have 46519 columns in 195 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hdhA/nostruct-align/1hdhA.t04-thin90.a2m.gz
# 1hdhA.t04-thin90.a2m with 980 sequences, total weight= 980 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.857543 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hdhA/info/1hdhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hdhA/nostruct-align/1hdhA.t04-thin90.a2m.gz, have 47044 columns in 196 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l7lA/nostruct-align/1l7lA.t04-thin90.a2m.gz
# 1l7lA.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0258 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l7lA/info/1l7lA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l7lA/nostruct-align/1l7lA.t04-thin90.a2m.gz, have 47165 columns in 197 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v77A/nostruct-align/1v77A.t04-thin90.a2m.gz
# 1v77A.t04-thin90.a2m with 62 sequences, total weight= 62 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.146 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v77A/info/1v77A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v77A/nostruct-align/1v77A.t04-thin90.a2m.gz, have 47367 columns in 198 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sdsA/nostruct-align/1sdsA.t04-thin90.a2m.gz
# 1sdsA.t04-thin90.a2m with 327 sequences, total weight= 310.194 avg weight= 0.948605 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30057 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sdsA/info/1sdsA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sdsA/nostruct-align/1sdsA.t04-thin90.a2m.gz, have 47482 columns in 199 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kolA/nostruct-align/1kolA.t04-thin90.a2m.gz
# 1kolA.t04-thin90.a2m with 1855 sequences, total weight= 1855 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19194 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kolA/info/1kolA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kolA/nostruct-align/1kolA.t04-thin90.a2m.gz, have 47878 columns in 200 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r9dA/nostruct-align/1r9dA.t04-thin90.a2m.gz
# 1r9dA.t04-thin90.a2m with 98 sequences, total weight= 48.5117 avg weight= 0.495017 43 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r9dA/info/1r9dA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r9dA/nostruct-align/1r9dA.t04-thin90.a2m.gz, have 48664 columns in 201 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dusA/nostruct-align/1dusA.t04-thin90.a2m.gz
# 1dusA.t04-thin90.a2m with 2306 sequences, total weight= 2306 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.818444 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dusA/info/1dusA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dusA/nostruct-align/1dusA.t04-thin90.a2m.gz, have 48858 columns in 202 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1viaA/nostruct-align/1viaA.t04-thin90.a2m.gz
# 1viaA.t04-thin90.a2m with 2166 sequences, total weight= 2166 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.889423 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1viaA/info/1viaA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1viaA/nostruct-align/1viaA.t04-thin90.a2m.gz, have 49019 columns in 203 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l9lA/nostruct-align/1l9lA.t04-thin90.a2m.gz
# 1l9lA.t04-thin90.a2m with 6 sequences, total weight= 3.70245 avg weight= 0.617076 14 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l9lA/info/1l9lA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l9lA/nostruct-align/1l9lA.t04-thin90.a2m.gz, have 49093 columns in 204 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c3pA/nostruct-align/1c3pA.t04-thin90.a2m.gz
# 1c3pA.t04-thin90.a2m with 292 sequences, total weight= 207.529 avg weight= 0.710716 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30282 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c3pA/info/1c3pA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1c3pA/nostruct-align/1c3pA.t04-thin90.a2m.gz, have 49465 columns in 205 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vlpA/nostruct-align/1vlpA.t04-thin90.a2m.gz
# 1vlpA.t04-thin90.a2m with 205 sequences, total weight= 114.561 avg weight= 0.558832 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30056 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vlpA/info/1vlpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vlpA/nostruct-align/1vlpA.t04-thin90.a2m.gz, have 49883 columns in 206 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hfeS/nostruct-align/1hfeS.t04-thin90.a2m.gz
# 1hfeS.t04-thin90.a2m with 13 sequences, total weight= 7.44781 avg weight= 0.572909 20 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hfeS/info/1hfeS.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hfeS/nostruct-align/1hfeS.t04-thin90.a2m.gz, have 49971 columns in 207 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h03P/nostruct-align/1h03P.t04-thin90.a2m.gz
# 1h03P.t04-thin90.a2m with 920 sequences, total weight= 920 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12507 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h03P/info/1h03P.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h03P/nostruct-align/1h03P.t04-thin90.a2m.gz, have 50096 columns in 208 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vjpA/nostruct-align/1vjpA.t04-thin90.a2m.gz
# 1vjpA.t04-thin90.a2m with 74 sequences, total weight= 23.082 avg weight= 0.311919 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vjpA/info/1vjpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vjpA/nostruct-align/1vjpA.t04-thin90.a2m.gz, have 50478 columns in 209 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w4xA/nostruct-align/1w4xA.t04-thin90.a2m.gz
# 1w4xA.t04-thin90.a2m with 2089 sequences, total weight= 2089 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02263 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w4xA/info/1w4xA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w4xA/nostruct-align/1w4xA.t04-thin90.a2m.gz, have 51011 columns in 210 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o66A/nostruct-align/1o66A.t04-thin90.a2m.gz
# 1o66A.t04-thin90.a2m with 139 sequences, total weight= 11.9227 avg weight= 0.0857751 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o66A/info/1o66A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o66A/nostruct-align/1o66A.t04-thin90.a2m.gz, have 51260 columns in 211 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h6lA/nostruct-align/1h6lA.t04-thin90.a2m.gz
# 1h6lA.t04-thin90.a2m with 27 sequences, total weight= 20.2707 avg weight= 0.750768 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h6lA/info/1h6lA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h6lA/nostruct-align/1h6lA.t04-thin90.a2m.gz, have 51613 columns in 212 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vicA/nostruct-align/1vicA.t04-thin90.a2m.gz
# 1vicA.t04-thin90.a2m with 1752 sequences, total weight= 1752 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.968533 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vicA/info/1vicA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vicA/nostruct-align/1vicA.t04-thin90.a2m.gz, have 51868 columns in 213 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bbkL/nostruct-align/2bbkL.t04-thin90.a2m.gz
# 2bbkL.t04-thin90.a2m with 10 sequences, total weight= 2.89195 avg weight= 0.289195 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bbkL/info/2bbkL.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2b/2bbkL/nostruct-align/2bbkL.t04-thin90.a2m.gz, have 51993 columns in 214 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3c/3chbD/nostruct-align/3chbD.t04-thin90.a2m.gz
# 3chbD.t04-thin90.a2m with 4 sequences, total weight= 2.26217 avg weight= 0.565544 10 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3c/3chbD/info/3chbD.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/3c/3chbD/nostruct-align/3chbD.t04-thin90.a2m.gz, have 52096 columns in 215 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1my7A/nostruct-align/1my7A.t04-thin90.a2m.gz
# 1my7A.t04-thin90.a2m with 35 sequences, total weight= 12.7891 avg weight= 0.365404 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1my7A/info/1my7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1my7A/nostruct-align/1my7A.t04-thin90.a2m.gz, have 52203 columns in 216 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nbcA/nostruct-align/1nbcA.t04-thin90.a2m.gz
# 1nbcA.t04-thin90.a2m with 69 sequences, total weight= 44.2397 avg weight= 0.641155 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nbcA/info/1nbcA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nbcA/nostruct-align/1nbcA.t04-thin90.a2m.gz, have 52358 columns in 217 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t6t1/nostruct-align/1t6t1.t04-thin90.a2m.gz
# 1t6t1.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.5933 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t6t1/info/1t6t1.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t6t1/nostruct-align/1t6t1.t04-thin90.a2m.gz, have 52466 columns in 218 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ek6A/nostruct-align/1ek6A.t04-thin90.a2m.gz
# 1ek6A.t04-thin90.a2m with 2138 sequences, total weight= 2138 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08763 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ek6A/info/1ek6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ek6A/nostruct-align/1ek6A.t04-thin90.a2m.gz, have 52812 columns in 219 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gz8A/nostruct-align/1gz8A.t04-thin90.a2m.gz
# 1gz8A.t04-thin90.a2m with 1158 sequences, total weight= 65.5212 avg weight= 0.0565813 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30734 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gz8A/info/1gz8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gz8A/nostruct-align/1gz8A.t04-thin90.a2m.gz, have 53103 columns in 220 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fjhA/nostruct-align/1fjhA.t04-thin90.a2m.gz
# 1fjhA.t04-thin90.a2m with 2313 sequences, total weight= 144.481 avg weight= 0.0624646 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31529 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fjhA/info/1fjhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fjhA/nostruct-align/1fjhA.t04-thin90.a2m.gz, have 53339 columns in 221 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cb0A/nostruct-align/1cb0A.t04-thin90.a2m.gz
# 1cb0A.t04-thin90.a2m with 501 sequences, total weight= 501 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02241 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cb0A/info/1cb0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cb0A/nostruct-align/1cb0A.t04-thin90.a2m.gz, have 53607 columns in 222 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1obfO/nostruct-align/1obfO.t04-thin90.a2m.gz
# 1obfO.t04-thin90.a2m with 854 sequences, total weight= 32.5776 avg weight= 0.0381471 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1obfO/info/1obfO.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1obfO/nostruct-align/1obfO.t04-thin90.a2m.gz, have 53942 columns in 223 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1evlA/nostruct-align/1evlA.t04-thin90.a2m.gz
# 1evlA.t04-thin90.a2m with 1269 sequences, total weight= 1269 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08745 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1evlA/info/1evlA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1evlA/nostruct-align/1evlA.t04-thin90.a2m.gz, have 54343 columns in 224 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hyoA/nostruct-align/1hyoA.t04-thin90.a2m.gz
# 1hyoA.t04-thin90.a2m with 399 sequences, total weight= 220.579 avg weight= 0.552829 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30143 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hyoA/info/1hyoA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hyoA/nostruct-align/1hyoA.t04-thin90.a2m.gz, have 54759 columns in 225 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nytA/nostruct-align/1nytA.t04-thin90.a2m.gz
# 1nytA.t04-thin90.a2m with 610 sequences, total weight= 610 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13571 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nytA/info/1nytA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nytA/nostruct-align/1nytA.t04-thin90.a2m.gz, have 55030 columns in 226 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pu6A/nostruct-align/1pu6A.t04-thin90.a2m.gz
# 1pu6A.t04-thin90.a2m with 559 sequences, total weight= 559 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11199 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pu6A/info/1pu6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pu6A/nostruct-align/1pu6A.t04-thin90.a2m.gz, have 55247 columns in 227 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qw9A/nostruct-align/1qw9A.t04-thin90.a2m.gz
# 1qw9A.t04-thin90.a2m with 176 sequences, total weight= 176 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.923544 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qw9A/info/1qw9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qw9A/nostruct-align/1qw9A.t04-thin90.a2m.gz, have 55744 columns in 228 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kqpA/nostruct-align/1kqpA.t04-thin90.a2m.gz
# 1kqpA.t04-thin90.a2m with 1429 sequences, total weight= 1429 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.883025 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kqpA/info/1kqpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kqpA/nostruct-align/1kqpA.t04-thin90.a2m.gz, have 56015 columns in 229 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mb3A/nostruct-align/1mb3A.t04-thin90.a2m.gz
# 1mb3A.t04-thin90.a2m with 2432 sequences, total weight= 103.546 avg weight= 0.0425764 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32808 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mb3A/info/1mb3A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mb3A/nostruct-align/1mb3A.t04-thin90.a2m.gz, have 56132 columns in 230 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oalA/nostruct-align/1oalA.t04-thin90.a2m.gz
# 1oalA.t04-thin90.a2m with 301 sequences, total weight= 39.0519 avg weight= 0.129741 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oalA/info/1oalA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oalA/nostruct-align/1oalA.t04-thin90.a2m.gz, have 56283 columns in 231 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mixA/nostruct-align/1mixA.t04-thin90.a2m.gz
# 1mixA.t04-thin90.a2m with 219 sequences, total weight= 219 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09645 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mixA/info/1mixA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mixA/nostruct-align/1mixA.t04-thin90.a2m.gz, have 56489 columns in 232 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p1jA/nostruct-align/1p1jA.t04-thin90.a2m.gz
# 1p1jA.t04-thin90.a2m with 65 sequences, total weight= 24.6339 avg weight= 0.378984 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p1jA/info/1p1jA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p1jA/nostruct-align/1p1jA.t04-thin90.a2m.gz, have 57014 columns in 233 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oh0A/nostruct-align/1oh0A.t04-thin90.a2m.gz
# 1oh0A.t04-thin90.a2m with 410 sequences, total weight= 410 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.84971 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oh0A/info/1oh0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oh0A/nostruct-align/1oh0A.t04-thin90.a2m.gz, have 57139 columns in 234 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1byi/nostruct-align/1byi.t04-thin90.a2m.gz
# 1byi.t04-thin90.a2m with 2049 sequences, total weight= 2049 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.926397 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1byi/info/1byi.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1byi/nostruct-align/1byi.t04-thin90.a2m.gz, have 57363 columns in 235 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/4u/4ubpB/nostruct-align/4ubpB.t04-thin90.a2m.gz
# 4ubpB.t04-thin90.a2m with 97 sequences, total weight= 7.12457 avg weight= 0.0734492 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/4u/4ubpB/info/4ubpB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/4u/4ubpB/nostruct-align/4ubpB.t04-thin90.a2m.gz, have 57485 columns in 236 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fnlA/nostruct-align/1fnlA.t04-thin90.a2m.gz
# 1fnlA.t04-thin90.a2m with 2967 sequences, total weight= 2967 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.933235 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fnlA/info/1fnlA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fnlA/nostruct-align/1fnlA.t04-thin90.a2m.gz, have 57658 columns in 237 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t0tV/nostruct-align/1t0tV.t04-thin90.a2m.gz
# 1t0tV.t04-thin90.a2m with 37 sequences, total weight= 28.5194 avg weight= 0.770794 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t0tV/info/1t0tV.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t0tV/nostruct-align/1t0tV.t04-thin90.a2m.gz, have 57901 columns in 238 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e6uA/nostruct-align/1e6uA.t04-thin90.a2m.gz
# 1e6uA.t04-thin90.a2m with 2126 sequences, total weight= 2126 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09643 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e6uA/info/1e6uA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e6uA/nostruct-align/1e6uA.t04-thin90.a2m.gz, have 58216 columns in 239 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q5yA/nostruct-align/1q5yA.t04-thin90.a2m.gz
# 1q5yA.t04-thin90.a2m with 38 sequences, total weight= 11.5421 avg weight= 0.303739 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q5yA/info/1q5yA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q5yA/nostruct-align/1q5yA.t04-thin90.a2m.gz, have 58300 columns in 240 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fk5A/nostruct-align/1fk5A.t04-thin90.a2m.gz
# 1fk5A.t04-thin90.a2m with 189 sequences, total weight= 66.6315 avg weight= 0.352548 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.301 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fk5A/info/1fk5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fk5A/nostruct-align/1fk5A.t04-thin90.a2m.gz, have 58393 columns in 241 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r0rI/nostruct-align/1r0rI.t04-thin90.a2m.gz
# 1r0rI.t04-thin90.a2m with 144 sequences, total weight= 22.8897 avg weight= 0.158956 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r0rI/info/1r0rI.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r0rI/nostruct-align/1r0rI.t04-thin90.a2m.gz, have 58444 columns in 242 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k4iA/nostruct-align/1k4iA.t04-thin90.a2m.gz
# 1k4iA.t04-thin90.a2m with 177 sequences, total weight= 12.9949 avg weight= 0.0734177 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k4iA/info/1k4iA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k4iA/nostruct-align/1k4iA.t04-thin90.a2m.gz, have 58660 columns in 243 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lopA/nostruct-align/1lopA.t04-thin90.a2m.gz
# 1lopA.t04-thin90.a2m with 688 sequences, total weight= 74.9318 avg weight= 0.108912 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30136 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lopA/info/1lopA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lopA/nostruct-align/1lopA.t04-thin90.a2m.gz, have 58824 columns in 244 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e7wA/nostruct-align/1e7wA.t04-thin90.a2m.gz
# 1e7wA.t04-thin90.a2m with 2346 sequences, total weight= 122.255 avg weight= 0.0521123 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30791 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e7wA/info/1e7wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e7wA/nostruct-align/1e7wA.t04-thin90.a2m.gz, have 59091 columns in 245 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t61A/nostruct-align/1t61A.t04-thin90.a2m.gz
# 1t61A.t04-thin90.a2m with 48 sequences, total weight= 4.5849 avg weight= 0.0955188 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t61A/info/1t61A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t61A/nostruct-align/1t61A.t04-thin90.a2m.gz, have 59314 columns in 246 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a8d/nostruct-align/1a8d.t04-thin90.a2m.gz
# 1a8d.t04-thin90.a2m with 48 sequences, total weight= 41.0792 avg weight= 0.855817 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a8d/info/1a8d.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a8d/nostruct-align/1a8d.t04-thin90.a2m.gz, have 59766 columns in 247 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nthA/nostruct-align/1nthA.t04-thin90.a2m.gz
# 1nthA.t04-thin90.a2m with 4 sequences, total weight= 3.84705 avg weight= 0.961761 6 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nthA/info/1nthA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nthA/nostruct-align/1nthA.t04-thin90.a2m.gz, have 60223 columns in 248 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kgdA/nostruct-align/1kgdA.t04-thin90.a2m.gz
# 1kgdA.t04-thin90.a2m with 724 sequences, total weight= 724 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13765 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kgdA/info/1kgdA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kgdA/nostruct-align/1kgdA.t04-thin90.a2m.gz, have 60398 columns in 249 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n0qA/nostruct-align/1n0qA.t04-thin90.a2m.gz
# 1n0qA.t04-thin90.a2m with 3885 sequences, total weight= 3885 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19398 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n0qA/info/1n0qA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n0qA/nostruct-align/1n0qA.t04-thin90.a2m.gz, have 60489 columns in 250 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1px5A/nostruct-align/1px5A.t04-thin90.a2m.gz
# 1px5A.t04-thin90.a2m with 53 sequences, total weight= 16.2333 avg weight= 0.306289 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1px5A/info/1px5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1px5A/nostruct-align/1px5A.t04-thin90.a2m.gz, have 60818 columns in 251 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jzgA/nostruct-align/1jzgA.t04-thin90.a2m.gz
# 1jzgA.t04-thin90.a2m with 28 sequences, total weight= 6.48222 avg weight= 0.231508 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jzgA/info/1jzgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jzgA/nostruct-align/1jzgA.t04-thin90.a2m.gz, have 60946 columns in 252 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i1jA/nostruct-align/1i1jA.t04-thin90.a2m.gz
# 1i1jA.t04-thin90.a2m with 12 sequences, total weight= 4.95312 avg weight= 0.41276 20 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i1jA/info/1i1jA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i1jA/nostruct-align/1i1jA.t04-thin90.a2m.gz, have 61052 columns in 253 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h0hB/nostruct-align/1h0hB.t04-thin90.a2m.gz
# 1h0hB.t04-thin90.a2m with 978 sequences, total weight= 978 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.99917 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h0hB/info/1h0hB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h0hB/nostruct-align/1h0hB.t04-thin90.a2m.gz, have 61266 columns in 254 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jm1A/nostruct-align/1jm1A.t04-thin90.a2m.gz
# 1jm1A.t04-thin90.a2m with 577 sequences, total weight= 577 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.997885 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jm1A/info/1jm1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jm1A/nostruct-align/1jm1A.t04-thin90.a2m.gz, have 61468 columns in 255 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fna/nostruct-align/1fna.t04-thin90.a2m.gz
# 1fna.t04-thin90.a2m with 2083 sequences, total weight= 2083 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03017 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fna/info/1fna.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fna/nostruct-align/1fna.t04-thin90.a2m.gz, have 61559 columns in 256 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lniA/nostruct-align/1lniA.t04-thin90.a2m.gz
# 1lniA.t04-thin90.a2m with 29 sequences, total weight= 9.21263 avg weight= 0.317677 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lniA/info/1lniA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lniA/nostruct-align/1lniA.t04-thin90.a2m.gz, have 61655 columns in 257 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b9wA/nostruct-align/1b9wA.t04-thin90.a2m.gz
# 1b9wA.t04-thin90.a2m with 22 sequences, total weight= 4.61592 avg weight= 0.209814 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b9wA/info/1b9wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1b9wA/nostruct-align/1b9wA.t04-thin90.a2m.gz, have 61744 columns in 258 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eu3A/nostruct-align/1eu3A.t04-thin90.a2m.gz
# 1eu3A.t04-thin90.a2m with 66 sequences, total weight= 46.0359 avg weight= 0.697513 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eu3A/info/1eu3A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eu3A/nostruct-align/1eu3A.t04-thin90.a2m.gz, have 61954 columns in 259 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k7cA/nostruct-align/1k7cA.t04-thin90.a2m.gz
# 1k7cA.t04-thin90.a2m with 558 sequences, total weight= 558 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.827173 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k7cA/info/1k7cA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k7cA/nostruct-align/1k7cA.t04-thin90.a2m.gz, have 62187 columns in 260 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t8kA/nostruct-align/1t8kA.t04-thin90.a2m.gz
# 1t8kA.t04-thin90.a2m with 285 sequences, total weight= 34.2033 avg weight= 0.120012 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t8kA/info/1t8kA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t8kA/nostruct-align/1t8kA.t04-thin90.a2m.gz, have 62264 columns in 261 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1ml4A/nostruct-align/1ml4A.t04-thin90.a2m.gz
# 1ml4A.t04-thin90.a2m with 388 sequences, total weight= 38.6989 avg weight= 0.0997394 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1ml4A/info/1ml4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1ml4A/nostruct-align/1ml4A.t04-thin90.a2m.gz, have 62571 columns in 262 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m1fA/nostruct-align/1m1fA.t04-thin90.a2m.gz
# 1m1fA.t04-thin90.a2m with 118 sequences, total weight= 90.1937 avg weight= 0.764353 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30053 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m1fA/info/1m1fA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m1fA/nostruct-align/1m1fA.t04-thin90.a2m.gz, have 62678 columns in 263 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n40A/nostruct-align/1n40A.t04-thin90.a2m.gz
# 1n40A.t04-thin90.a2m with 1897 sequences, total weight= 1897 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14732 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n40A/info/1n40A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n40A/nostruct-align/1n40A.t04-thin90.a2m.gz, have 63072 columns in 264 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qhoA/nostruct-align/1qhoA.t04-thin90.a2m.gz
# 1qhoA.t04-thin90.a2m with 1307 sequences, total weight= 1307 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13897 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qhoA/info/1qhoA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qhoA/nostruct-align/1qhoA.t04-thin90.a2m.gz, have 63758 columns in 265 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o7qA/nostruct-align/1o7qA.t04-thin90.a2m.gz
# 1o7qA.t04-thin90.a2m with 41 sequences, total weight= 8.51309 avg weight= 0.207636 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o7qA/info/1o7qA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o7qA/nostruct-align/1o7qA.t04-thin90.a2m.gz, have 64045 columns in 266 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p3cA/nostruct-align/1p3cA.t04-thin90.a2m.gz
# 1p3cA.t04-thin90.a2m with 1917 sequences, total weight= 1917 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29358 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p3cA/info/1p3cA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p3cA/nostruct-align/1p3cA.t04-thin90.a2m.gz, have 64260 columns in 267 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yacA/nostruct-align/1yacA.t04-thin90.a2m.gz
# 1yacA.t04-thin90.a2m with 467 sequences, total weight= 467 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11919 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yacA/info/1yacA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1y/1yacA/nostruct-align/1yacA.t04-thin90.a2m.gz, have 64464 columns in 268 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mgqA/nostruct-align/1mgqA.t04-thin90.a2m.gz
# 1mgqA.t04-thin90.a2m with 249 sequences, total weight= 115.072 avg weight= 0.462137 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30289 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mgqA/info/1mgqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mgqA/nostruct-align/1mgqA.t04-thin90.a2m.gz, have 64538 columns in 269 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e58A/nostruct-align/1e58A.t04-thin90.a2m.gz
# 1e58A.t04-thin90.a2m with 835 sequences, total weight= 835 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.991614 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e58A/info/1e58A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e58A/nostruct-align/1e58A.t04-thin90.a2m.gz, have 64785 columns in 270 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kq3A/nostruct-align/1kq3A.t04-thin90.a2m.gz
# 1kq3A.t04-thin90.a2m with 608 sequences, total weight= 608 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13274 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kq3A/info/1kq3A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kq3A/nostruct-align/1kq3A.t04-thin90.a2m.gz, have 65149 columns in 271 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w3iA/nostruct-align/1w3iA.t04-thin90.a2m.gz
# 1w3iA.t04-thin90.a2m with 487 sequences, total weight= 487 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25723 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w3iA/info/1w3iA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w3iA/nostruct-align/1w3iA.t04-thin90.a2m.gz, have 65442 columns in 272 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uxzA/nostruct-align/1uxzA.t04-thin90.a2m.gz
# 1uxzA.t04-thin90.a2m with 134 sequences, total weight= 94.5219 avg weight= 0.705388 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30051 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uxzA/info/1uxzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uxzA/nostruct-align/1uxzA.t04-thin90.a2m.gz, have 65573 columns in 273 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kugA/nostruct-align/1kugA.t04-thin90.a2m.gz
# 1kugA.t04-thin90.a2m with 362 sequences, total weight= 362 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17121 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kugA/info/1kugA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kugA/nostruct-align/1kugA.t04-thin90.a2m.gz, have 65774 columns in 274 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vfyA/nostruct-align/1vfyA.t04-thin90.a2m.gz
# 1vfyA.t04-thin90.a2m with 184 sequences, total weight= 40.9269 avg weight= 0.222429 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3015 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vfyA/info/1vfyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vfyA/nostruct-align/1vfyA.t04-thin90.a2m.gz, have 65841 columns in 275 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r12A/nostruct-align/1r12A.t04-thin90.a2m.gz
# 1r12A.t04-thin90.a2m with 12 sequences, total weight= 6.32465 avg weight= 0.527054 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r12A/info/1r12A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r12A/nostruct-align/1r12A.t04-thin90.a2m.gz, have 66092 columns in 276 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h72C/nostruct-align/1h72C.t04-thin90.a2m.gz
# 1h72C.t04-thin90.a2m with 654 sequences, total weight= 654 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.995409 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h72C/info/1h72C.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h72C/nostruct-align/1h72C.t04-thin90.a2m.gz, have 66388 columns in 277 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1olrA/nostruct-align/1olrA.t04-thin90.a2m.gz
# 1olrA.t04-thin90.a2m with 55 sequences, total weight= 28.9999 avg weight= 0.527271 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1olrA/info/1olrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1olrA/nostruct-align/1olrA.t04-thin90.a2m.gz, have 66612 columns in 278 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nycA/nostruct-align/1nycA.t04-thin90.a2m.gz
# 1nycA.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04307 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nycA/info/1nycA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nycA/nostruct-align/1nycA.t04-thin90.a2m.gz, have 66723 columns in 279 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dqgA/nostruct-align/1dqgA.t04-thin90.a2m.gz
# 1dqgA.t04-thin90.a2m with 16 sequences, total weight= 8.86823 avg weight= 0.554264 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dqgA/info/1dqgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dqgA/nostruct-align/1dqgA.t04-thin90.a2m.gz, have 66857 columns in 280 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gs5A/nostruct-align/1gs5A.t04-thin90.a2m.gz
# 1gs5A.t04-thin90.a2m with 823 sequences, total weight= 823 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16762 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gs5A/info/1gs5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gs5A/nostruct-align/1gs5A.t04-thin90.a2m.gz, have 67115 columns in 281 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lfwA/nostruct-align/1lfwA.t04-thin90.a2m.gz
# 1lfwA.t04-thin90.a2m with 1283 sequences, total weight= 1283 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.97039 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lfwA/info/1lfwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lfwA/nostruct-align/1lfwA.t04-thin90.a2m.gz, have 67583 columns in 282 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lwbA/nostruct-align/1lwbA.t04-thin90.a2m.gz
# 1lwbA.t04-thin90.a2m with 13 sequences, total weight= 5.66616 avg weight= 0.435859 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lwbA/info/1lwbA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lwbA/nostruct-align/1lwbA.t04-thin90.a2m.gz, have 67705 columns in 283 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/7o/7odcA/nostruct-align/7odcA.t04-thin90.a2m.gz
# 7odcA.t04-thin90.a2m with 646 sequences, total weight= 646 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06376 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/7o/7odcA/info/7odcA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/7o/7odcA/nostruct-align/7odcA.t04-thin90.a2m.gz, have 68092 columns in 284 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nls/nostruct-align/1nls.t04-thin90.a2m.gz
# 1nls.t04-thin90.a2m with 449 sequences, total weight= 158.454 avg weight= 0.352904 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30235 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nls/info/1nls.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nls/nostruct-align/1nls.t04-thin90.a2m.gz, have 68329 columns in 285 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pq7A/nostruct-align/1pq7A.t04-thin90.a2m.gz
# 1pq7A.t04-thin90.a2m with 1915 sequences, total weight= 494.387 avg weight= 0.258165 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.33113 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pq7A/info/1pq7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pq7A/nostruct-align/1pq7A.t04-thin90.a2m.gz, have 68553 columns in 286 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d8wA/nostruct-align/1d8wA.t04-thin90.a2m.gz
# 1d8wA.t04-thin90.a2m with 89 sequences, total weight= 48.379 avg weight= 0.543584 42 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d8wA/info/1d8wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d8wA/nostruct-align/1d8wA.t04-thin90.a2m.gz, have 68955 columns in 287 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mtzA/nostruct-align/1mtzA.t04-thin90.a2m.gz
# 1mtzA.t04-thin90.a2m with 2339 sequences, total weight= 2339 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.784828 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mtzA/info/1mtzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mtzA/nostruct-align/1mtzA.t04-thin90.a2m.gz, have 69245 columns in 288 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lam/nostruct-align/1lam.t04-thin90.a2m.gz
# 1lam.t04-thin90.a2m with 227 sequences, total weight= 47.4053 avg weight= 0.208834 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30055 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lam/info/1lam.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lam/nostruct-align/1lam.t04-thin90.a2m.gz, have 69729 columns in 289 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1ltzA/nostruct-align/1ltzA.t04-thin90.a2m.gz
# 1ltzA.t04-thin90.a2m with 61 sequences, total weight= 16.9704 avg weight= 0.278203 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1ltzA/info/1ltzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1ltzA/nostruct-align/1ltzA.t04-thin90.a2m.gz, have 70003 columns in 290 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nar/nostruct-align/1nar.t04-thin90.a2m.gz
# 1nar.t04-thin90.a2m with 651 sequences, total weight= 651 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07809 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nar/info/1nar.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nar/nostruct-align/1nar.t04-thin90.a2m.gz, have 70292 columns in 291 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mof/nostruct-align/1mof.t04-thin90.a2m.gz
# 1mof.t04-thin90.a2m with 38 sequences, total weight= 6.77211 avg weight= 0.178213 20 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mof/info/1mof.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mof/nostruct-align/1mof.t04-thin90.a2m.gz, have 70345 columns in 292 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kyfA/nostruct-align/1kyfA.t04-thin90.a2m.gz
# 1kyfA.t04-thin90.a2m with 26 sequences, total weight= 22.9897 avg weight= 0.88422 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kyfA/info/1kyfA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kyfA/nostruct-align/1kyfA.t04-thin90.a2m.gz, have 70592 columns in 293 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dozA/nostruct-align/1dozA.t04-thin90.a2m.gz
# 1dozA.t04-thin90.a2m with 169 sequences, total weight= 51.0605 avg weight= 0.302133 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30031 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dozA/info/1dozA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dozA/nostruct-align/1dozA.t04-thin90.a2m.gz, have 70901 columns in 294 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lfpA/nostruct-align/1lfpA.t04-thin90.a2m.gz
# 1lfpA.t04-thin90.a2m with 157 sequences, total weight= 21.0483 avg weight= 0.134066 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lfpA/info/1lfpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lfpA/nostruct-align/1lfpA.t04-thin90.a2m.gz, have 71144 columns in 295 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3h/3htsB/nostruct-align/3htsB.t04-thin90.a2m.gz
# 3htsB.t04-thin90.a2m with 106 sequences, total weight= 17.5227 avg weight= 0.165308 37 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3h/3htsB/info/3htsB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/3h/3htsB/nostruct-align/3htsB.t04-thin90.a2m.gz, have 71226 columns in 296 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hnjA/nostruct-align/1hnjA.t04-thin90.a2m.gz
# 1hnjA.t04-thin90.a2m with 2267 sequences, total weight= 2267 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13028 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hnjA/info/1hnjA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hnjA/nostruct-align/1hnjA.t04-thin90.a2m.gz, have 71543 columns in 297 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m55A/nostruct-align/1m55A.t04-thin90.a2m.gz
# 1m55A.t04-thin90.a2m with 10 sequences, total weight= 10 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27935 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m55A/info/1m55A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m55A/nostruct-align/1m55A.t04-thin90.a2m.gz, have 71736 columns in 298 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jfbA/nostruct-align/1jfbA.t04-thin90.a2m.gz
# 1jfbA.t04-thin90.a2m with 1855 sequences, total weight= 1855 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14906 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jfbA/info/1jfbA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jfbA/nostruct-align/1jfbA.t04-thin90.a2m.gz, have 72135 columns in 299 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o7iA/nostruct-align/1o7iA.t04-thin90.a2m.gz
# 1o7iA.t04-thin90.a2m with 98 sequences, total weight= 98 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22929 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o7iA/info/1o7iA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o7iA/nostruct-align/1o7iA.t04-thin90.a2m.gz, have 72250 columns in 300 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n93X/nostruct-align/1n93X.t04-thin90.a2m.gz
# 1n93X.t04-thin90.a2m with 11 sequences, total weight= 5.24515 avg weight= 0.476832 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n93X/info/1n93X.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n93X/nostruct-align/1n93X.t04-thin90.a2m.gz, have 72585 columns in 301 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qq5A/nostruct-align/1qq5A.t04-thin90.a2m.gz
# 1qq5A.t04-thin90.a2m with 1896 sequences, total weight= 1896 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.793937 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qq5A/info/1qq5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qq5A/nostruct-align/1qq5A.t04-thin90.a2m.gz, have 72830 columns in 302 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f8eA/nostruct-align/1f8eA.t04-thin90.a2m.gz
# 1f8eA.t04-thin90.a2m with 22 sequences, total weight= 4.68042 avg weight= 0.212746 19 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f8eA/info/1f8eA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f8eA/nostruct-align/1f8eA.t04-thin90.a2m.gz, have 73218 columns in 303 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f9zA/nostruct-align/1f9zA.t04-thin90.a2m.gz
# 1f9zA.t04-thin90.a2m with 1734 sequences, total weight= 1734 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.888533 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f9zA/info/1f9zA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f9zA/nostruct-align/1f9zA.t04-thin90.a2m.gz, have 73346 columns in 304 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r5rA/nostruct-align/1r5rA.t04-thin90.a2m.gz
# 1r5rA.t04-thin90.a2m with 208 sequences, total weight= 208 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.966659 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r5rA/info/1r5rA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r5rA/nostruct-align/1r5rA.t04-thin90.a2m.gz, have 73463 columns in 305 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uoyA/nostruct-align/1uoyA.t04-thin90.a2m.gz
# 1uoyA.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.691603 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uoyA/info/1uoyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uoyA/nostruct-align/1uoyA.t04-thin90.a2m.gz, have 73527 columns in 306 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kzqA/nostruct-align/1kzqA.t04-thin90.a2m.gz
# 1kzqA.t04-thin90.a2m with 31 sequences, total weight= 28.7835 avg weight= 0.928501 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kzqA/info/1kzqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kzqA/nostruct-align/1kzqA.t04-thin90.a2m.gz, have 73780 columns in 307 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ow1A/nostruct-align/1ow1A.t04-thin90.a2m.gz
# 1ow1A.t04-thin90.a2m with 10 sequences, total weight= 6.79296 avg weight= 0.679296 19 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ow1A/info/1ow1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ow1A/nostruct-align/1ow1A.t04-thin90.a2m.gz, have 73947 columns in 308 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m1nB/nostruct-align/1m1nB.t04-thin90.a2m.gz
# 1m1nB.t04-thin90.a2m with 396 sequences, total weight= 396 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22813 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m1nB/info/1m1nB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m1nB/nostruct-align/1m1nB.t04-thin90.a2m.gz, have 74469 columns in 309 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iirA/nostruct-align/1iirA.t04-thin90.a2m.gz
# 1iirA.t04-thin90.a2m with 2262 sequences, total weight= 2262 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.808245 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iirA/info/1iirA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iirA/nostruct-align/1iirA.t04-thin90.a2m.gz, have 74851 columns in 310 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j54A/nostruct-align/1j54A.t04-thin90.a2m.gz
# 1j54A.t04-thin90.a2m with 650 sequences, total weight= 650 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06023 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j54A/info/1j54A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j54A/nostruct-align/1j54A.t04-thin90.a2m.gz, have 75025 columns in 311 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qw2A/nostruct-align/1qw2A.t04-thin90.a2m.gz
# 1qw2A.t04-thin90.a2m with 13 sequences, total weight= 6.40463 avg weight= 0.492664 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qw2A/info/1qw2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qw2A/nostruct-align/1qw2A.t04-thin90.a2m.gz, have 75127 columns in 312 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vkfA/nostruct-align/1vkfA.t04-thin90.a2m.gz
# 1vkfA.t04-thin90.a2m with 23 sequences, total weight= 8.91801 avg weight= 0.38774 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vkfA/info/1vkfA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vkfA/nostruct-align/1vkfA.t04-thin90.a2m.gz, have 75299 columns in 313 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v4vA/nostruct-align/1v4vA.t04-thin90.a2m.gz
# 1v4vA.t04-thin90.a2m with 2438 sequences, total weight= 2438 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.811693 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v4vA/info/1v4vA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v4vA/nostruct-align/1v4vA.t04-thin90.a2m.gz, have 75672 columns in 314 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wd3A/nostruct-align/1wd3A.t04-thin90.a2m.gz
# 1wd3A.t04-thin90.a2m with 43 sequences, total weight= 25.7977 avg weight= 0.599948 25 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wd3A/info/1wd3A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wd3A/nostruct-align/1wd3A.t04-thin90.a2m.gz, have 76154 columns in 315 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iuaA/nostruct-align/1iuaA.t04-thin90.a2m.gz
# 1iuaA.t04-thin90.a2m with 31 sequences, total weight= 13.9618 avg weight= 0.45038 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iuaA/info/1iuaA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iuaA/nostruct-align/1iuaA.t04-thin90.a2m.gz, have 76237 columns in 316 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r7aA/nostruct-align/1r7aA.t04-thin90.a2m.gz
# 1r7aA.t04-thin90.a2m with 1275 sequences, total weight= 1275 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01837 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r7aA/info/1r7aA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r7aA/nostruct-align/1r7aA.t04-thin90.a2m.gz, have 76741 columns in 317 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lqtA/nostruct-align/1lqtA.t04-thin90.a2m.gz
# 1lqtA.t04-thin90.a2m with 2181 sequences, total weight= 2181 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.911331 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lqtA/info/1lqtA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lqtA/nostruct-align/1lqtA.t04-thin90.a2m.gz, have 77193 columns in 318 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qsgA/nostruct-align/1qsgA.t04-thin90.a2m.gz
# 1qsgA.t04-thin90.a2m with 2356 sequences, total weight= 109.347 avg weight= 0.0464123 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32238 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qsgA/info/1qsgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qsgA/nostruct-align/1qsgA.t04-thin90.a2m.gz, have 77451 columns in 319 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1amf/nostruct-align/1amf.t04-thin90.a2m.gz
# 1amf.t04-thin90.a2m with 1427 sequences, total weight= 1427 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.873387 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1amf/info/1amf.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1amf/nostruct-align/1amf.t04-thin90.a2m.gz, have 77682 columns in 320 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1llnA/nostruct-align/1llnA.t04-thin90.a2m.gz
# 1llnA.t04-thin90.a2m with 104 sequences, total weight= 104 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25432 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1llnA/info/1llnA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1llnA/nostruct-align/1llnA.t04-thin90.a2m.gz, have 77944 columns in 321 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jyhA/nostruct-align/1jyhA.t04-thin90.a2m.gz
# 1jyhA.t04-thin90.a2m with 159 sequences, total weight= 159 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01758 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jyhA/info/1jyhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jyhA/nostruct-align/1jyhA.t04-thin90.a2m.gz, have 78099 columns in 322 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hdoA/nostruct-align/1hdoA.t04-thin90.a2m.gz
# 1hdoA.t04-thin90.a2m with 2215 sequences, total weight= 2215 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15617 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hdoA/info/1hdoA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hdoA/nostruct-align/1hdoA.t04-thin90.a2m.gz, have 78304 columns in 323 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1udzA/nostruct-align/1udzA.t04-thin90.a2m.gz
# 1udzA.t04-thin90.a2m with 620 sequences, total weight= 267.171 avg weight= 0.430921 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31091 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1udzA/info/1udzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1udzA/nostruct-align/1udzA.t04-thin90.a2m.gz, have 78483 columns in 324 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1luzA/nostruct-align/1luzA.t04-thin90.a2m.gz
# 1luzA.t04-thin90.a2m with 9 sequences, total weight= 5.99834 avg weight= 0.666482 19 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1luzA/info/1luzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1luzA/nostruct-align/1luzA.t04-thin90.a2m.gz, have 78568 columns in 325 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rdqE/nostruct-align/1rdqE.t04-thin90.a2m.gz
# 1rdqE.t04-thin90.a2m with 1435 sequences, total weight= 364.327 avg weight= 0.253886 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32932 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rdqE/info/1rdqE.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rdqE/nostruct-align/1rdqE.t04-thin90.a2m.gz, have 78910 columns in 326 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dosA/nostruct-align/1dosA.t04-thin90.a2m.gz
# 1dosA.t04-thin90.a2m with 221 sequences, total weight= 43.0398 avg weight= 0.19475 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dosA/info/1dosA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dosA/nostruct-align/1dosA.t04-thin90.a2m.gz, have 79268 columns in 327 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iqzA/nostruct-align/1iqzA.t04-thin90.a2m.gz
# 1iqzA.t04-thin90.a2m with 168 sequences, total weight= 168 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2383 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iqzA/info/1iqzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iqzA/nostruct-align/1iqzA.t04-thin90.a2m.gz, have 79349 columns in 328 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iomA/nostruct-align/1iomA.t04-thin90.a2m.gz
# 1iomA.t04-thin90.a2m with 295 sequences, total weight= 77.7611 avg weight= 0.263597 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30103 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iomA/info/1iomA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iomA/nostruct-align/1iomA.t04-thin90.a2m.gz, have 79723 columns in 329 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n4wA/nostruct-align/1n4wA.t04-thin90.a2m.gz
# 1n4wA.t04-thin90.a2m with 2119 sequences, total weight= 2119 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.870371 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n4wA/info/1n4wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n4wA/nostruct-align/1n4wA.t04-thin90.a2m.gz, have 80221 columns in 330 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d7pM/nostruct-align/1d7pM.t04-thin90.a2m.gz
# 1d7pM.t04-thin90.a2m with 154 sequences, total weight= 45.9551 avg weight= 0.29841 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d7pM/info/1d7pM.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d7pM/nostruct-align/1d7pM.t04-thin90.a2m.gz, have 80380 columns in 331 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1ja9A/nostruct-align/1ja9A.t04-thin90.a2m.gz
# 1ja9A.t04-thin90.a2m with 2368 sequences, total weight= 98.8118 avg weight= 0.041728 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31765 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1ja9A/info/1ja9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1ja9A/nostruct-align/1ja9A.t04-thin90.a2m.gz, have 80639 columns in 332 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hdkA/nostruct-align/1hdkA.t04-thin90.a2m.gz
# 1hdkA.t04-thin90.a2m with 218 sequences, total weight= 218 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22248 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hdkA/info/1hdkA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hdkA/nostruct-align/1hdkA.t04-thin90.a2m.gz, have 80778 columns in 333 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ii5A/nostruct-align/1ii5A.t04-thin90.a2m.gz
# 1ii5A.t04-thin90.a2m with 1576 sequences, total weight= 1576 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.915862 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ii5A/info/1ii5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ii5A/nostruct-align/1ii5A.t04-thin90.a2m.gz, have 80999 columns in 334 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bkf/nostruct-align/1bkf.t04-thin90.a2m.gz
# 1bkf.t04-thin90.a2m with 548 sequences, total weight= 96.3021 avg weight= 0.175734 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30401 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bkf/info/1bkf.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bkf/nostruct-align/1bkf.t04-thin90.a2m.gz, have 81106 columns in 335 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bebA/nostruct-align/1bebA.t04-thin90.a2m.gz
# 1bebA.t04-thin90.a2m with 263 sequences, total weight= 263 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.992111 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bebA/info/1bebA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bebA/nostruct-align/1bebA.t04-thin90.a2m.gz, have 81262 columns in 336 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m22A/nostruct-align/1m22A.t04-thin90.a2m.gz
# 1m22A.t04-thin90.a2m with 597 sequences, total weight= 597 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2883 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m22A/info/1m22A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m22A/nostruct-align/1m22A.t04-thin90.a2m.gz, have 81749 columns in 337 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oafA/nostruct-align/1oafA.t04-thin90.a2m.gz
# 1oafA.t04-thin90.a2m with 580 sequences, total weight= 59.4054 avg weight= 0.102423 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30139 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oafA/info/1oafA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oafA/nostruct-align/1oafA.t04-thin90.a2m.gz, have 81999 columns in 338 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vd5A/nostruct-align/1vd5A.t04-thin90.a2m.gz
# 1vd5A.t04-thin90.a2m with 179 sequences, total weight= 179 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.974322 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vd5A/info/1vd5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vd5A/nostruct-align/1vd5A.t04-thin90.a2m.gz, have 82376 columns in 339 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dp7P/nostruct-align/1dp7P.t04-thin90.a2m.gz
# 1dp7P.t04-thin90.a2m with 25 sequences, total weight= 6.37922 avg weight= 0.255169 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dp7P/info/1dp7P.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dp7P/nostruct-align/1dp7P.t04-thin90.a2m.gz, have 82452 columns in 340 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v2bA/nostruct-align/1v2bA.t04-thin90.a2m.gz
# 1v2bA.t04-thin90.a2m with 51 sequences, total weight= 30.6924 avg weight= 0.601811 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v2bA/info/1v2bA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v2bA/nostruct-align/1v2bA.t04-thin90.a2m.gz, have 82600 columns in 341 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d02A/nostruct-align/1d02A.t04-thin90.a2m.gz
# 1d02A.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.615068 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d02A/info/1d02A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d02A/nostruct-align/1d02A.t04-thin90.a2m.gz, have 82797 columns in 342 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gp6A/nostruct-align/1gp6A.t04-thin90.a2m.gz
# 1gp6A.t04-thin90.a2m with 545 sequences, total weight= 545 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21974 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gp6A/info/1gp6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gp6A/nostruct-align/1gp6A.t04-thin90.a2m.gz, have 83146 columns in 343 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rz2A/nostruct-align/1rz2A.t04-thin90.a2m.gz
# 1rz2A.t04-thin90.a2m with 11 sequences, total weight= 9.42696 avg weight= 0.856996 19 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rz2A/info/1rz2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rz2A/nostruct-align/1rz2A.t04-thin90.a2m.gz, have 83360 columns in 344 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1io7A/nostruct-align/1io7A.t04-thin90.a2m.gz
# 1io7A.t04-thin90.a2m with 1876 sequences, total weight= 1876 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14075 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1io7A/info/1io7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1io7A/nostruct-align/1io7A.t04-thin90.a2m.gz, have 83726 columns in 345 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uwwA/nostruct-align/1uwwA.t04-thin90.a2m.gz
# 1uwwA.t04-thin90.a2m with 14 sequences, total weight= 6.58951 avg weight= 0.470679 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uwwA/info/1uwwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uwwA/nostruct-align/1uwwA.t04-thin90.a2m.gz, have 83910 columns in 346 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pinA/nostruct-align/1pinA.t04-thin90.a2m.gz
# 1pinA.t04-thin90.a2m with 346 sequences, total weight= 346 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21184 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pinA/info/1pinA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pinA/nostruct-align/1pinA.t04-thin90.a2m.gz, have 84063 columns in 347 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h75A/nostruct-align/1h75A.t04-thin90.a2m.gz
# 1h75A.t04-thin90.a2m with 912 sequences, total weight= 912 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17729 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h75A/info/1h75A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h75A/nostruct-align/1h75A.t04-thin90.a2m.gz, have 84139 columns in 348 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ispA/nostruct-align/1ispA.t04-thin90.a2m.gz
# 1ispA.t04-thin90.a2m with 2309 sequences, total weight= 2309 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.745048 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ispA/info/1ispA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ispA/nostruct-align/1ispA.t04-thin90.a2m.gz, have 84318 columns in 349 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qh5A/nostruct-align/1qh5A.t04-thin90.a2m.gz
# 1qh5A.t04-thin90.a2m with 2039 sequences, total weight= 2039 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.839767 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qh5A/info/1qh5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qh5A/nostruct-align/1qh5A.t04-thin90.a2m.gz, have 84578 columns in 350 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cs1A/nostruct-align/1cs1A.t04-thin90.a2m.gz
# 1cs1A.t04-thin90.a2m with 2215 sequences, total weight= 2215 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01974 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cs1A/info/1cs1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cs1A/nostruct-align/1cs1A.t04-thin90.a2m.gz, have 84962 columns in 351 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v0wA/nostruct-align/1v0wA.t04-thin90.a2m.gz
# 1v0wA.t04-thin90.a2m with 591 sequences, total weight= 591 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.930589 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v0wA/info/1v0wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v0wA/nostruct-align/1v0wA.t04-thin90.a2m.gz, have 85458 columns in 352 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n08A/nostruct-align/1n08A.t04-thin90.a2m.gz
# 1n08A.t04-thin90.a2m with 170 sequences, total weight= 44.127 avg weight= 0.259571 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30047 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n08A/info/1n08A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n08A/nostruct-align/1n08A.t04-thin90.a2m.gz, have 85612 columns in 353 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lc5A/nostruct-align/1lc5A.t04-thin90.a2m.gz
# 1lc5A.t04-thin90.a2m with 2120 sequences, total weight= 2120 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0322 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lc5A/info/1lc5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lc5A/nostruct-align/1lc5A.t04-thin90.a2m.gz, have 85967 columns in 354 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r5yA/nostruct-align/1r5yA.t04-thin90.a2m.gz
# 1r5yA.t04-thin90.a2m with 203 sequences, total weight= 53.7721 avg weight= 0.264887 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r5yA/info/1r5yA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r5yA/nostruct-align/1r5yA.t04-thin90.a2m.gz, have 86328 columns in 355 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cl8A/nostruct-align/1cl8A.t04-thin90.a2m.gz
# 1cl8A.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05946 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cl8A/info/1cl8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cl8A/nostruct-align/1cl8A.t04-thin90.a2m.gz, have 86589 columns in 356 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1je0A/nostruct-align/1je0A.t04-thin90.a2m.gz
# 1je0A.t04-thin90.a2m with 541 sequences, total weight= 541 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00467 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1je0A/info/1je0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1je0A/nostruct-align/1je0A.t04-thin90.a2m.gz, have 86815 columns in 357 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gnyA/nostruct-align/1gnyA.t04-thin90.a2m.gz
# 1gnyA.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13668 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gnyA/info/1gnyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gnyA/nostruct-align/1gnyA.t04-thin90.a2m.gz, have 86968 columns in 358 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uwcA/nostruct-align/1uwcA.t04-thin90.a2m.gz
# 1uwcA.t04-thin90.a2m with 635 sequences, total weight= 635 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.770714 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uwcA/info/1uwcA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uwcA/nostruct-align/1uwcA.t04-thin90.a2m.gz, have 87229 columns in 359 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ooeA/nostruct-align/1ooeA.t04-thin90.a2m.gz
# 1ooeA.t04-thin90.a2m with 2339 sequences, total weight= 91.3282 avg weight= 0.0390458 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31377 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ooeA/info/1ooeA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ooeA/nostruct-align/1ooeA.t04-thin90.a2m.gz, have 87464 columns in 360 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o7jA/nostruct-align/1o7jA.t04-thin90.a2m.gz
# 1o7jA.t04-thin90.a2m with 163 sequences, total weight= 54.0565 avg weight= 0.331635 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30045 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o7jA/info/1o7jA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o7jA/nostruct-align/1o7jA.t04-thin90.a2m.gz, have 87789 columns in 361 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uvqA/nostruct-align/1uvqA.t04-thin90.a2m.gz
# 1uvqA.t04-thin90.a2m with 690 sequences, total weight= 56.4882 avg weight= 0.081867 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30106 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uvqA/info/1uvqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uvqA/nostruct-align/1uvqA.t04-thin90.a2m.gz, have 87971 columns in 362 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m6sA/nostruct-align/1m6sA.t04-thin90.a2m.gz
# 1m6sA.t04-thin90.a2m with 2107 sequences, total weight= 2107 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03208 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m6sA/info/1m6sA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m6sA/nostruct-align/1m6sA.t04-thin90.a2m.gz, have 88314 columns in 363 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vm0A/nostruct-align/1vm0A.t04-thin90.a2m.gz
# 1vm0A.t04-thin90.a2m with 5 sequences, total weight= 2.95056 avg weight= 0.590112 10 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vm0A/info/1vm0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vm0A/nostruct-align/1vm0A.t04-thin90.a2m.gz, have 88407 columns in 364 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e0cA/nostruct-align/1e0cA.t04-thin90.a2m.gz
# 1e0cA.t04-thin90.a2m with 1017 sequences, total weight= 1017 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.953446 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e0cA/info/1e0cA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e0cA/nostruct-align/1e0cA.t04-thin90.a2m.gz, have 88678 columns in 365 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1usgA/nostruct-align/1usgA.t04-thin90.a2m.gz
# 1usgA.t04-thin90.a2m with 1100 sequences, total weight= 1100 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.877159 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1usgA/info/1usgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1usgA/nostruct-align/1usgA.t04-thin90.a2m.gz, have 89023 columns in 366 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1ga6A/nostruct-align/1ga6A.t04-thin90.a2m.gz
# 1ga6A.t04-thin90.a2m with 911 sequences, total weight= 911 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05971 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1ga6A/info/1ga6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1ga6A/nostruct-align/1ga6A.t04-thin90.a2m.gz, have 89392 columns in 367 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1agjA/nostruct-align/1agjA.t04-thin90.a2m.gz
# 1agjA.t04-thin90.a2m with 1981 sequences, total weight= 1981 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23126 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1agjA/info/1agjA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1agjA/nostruct-align/1agjA.t04-thin90.a2m.gz, have 89634 columns in 368 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1se8A/nostruct-align/1se8A.t04-thin90.a2m.gz
# 1se8A.t04-thin90.a2m with 229 sequences, total weight= 41.2159 avg weight= 0.179982 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1se8A/info/1se8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1se8A/nostruct-align/1se8A.t04-thin90.a2m.gz, have 89847 columns in 369 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pot/nostruct-align/1pot.t04-thin90.a2m.gz
# 1pot.t04-thin90.a2m with 1412 sequences, total weight= 1412 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.851061 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pot/info/1pot.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pot/nostruct-align/1pot.t04-thin90.a2m.gz, have 90169 columns in 370 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vie/nostruct-align/1vie.t04-thin90.a2m.gz
# 1vie.t04-thin90.a2m with 3 sequences, total weight= 1.86785 avg weight= 0.622616 10 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vie/info/1vie.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vie/nostruct-align/1vie.t04-thin90.a2m.gz, have 90229 columns in 371 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dk0A/nostruct-align/1dk0A.t04-thin90.a2m.gz
# 1dk0A.t04-thin90.a2m with 4 sequences, total weight= 3.5436 avg weight= 0.885899 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dk0A/info/1dk0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dk0A/nostruct-align/1dk0A.t04-thin90.a2m.gz, have 90402 columns in 372 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r6jA/nostruct-align/1r6jA.t04-thin90.a2m.gz
# 1r6jA.t04-thin90.a2m with 349 sequences, total weight= 76.7403 avg weight= 0.219886 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30404 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r6jA/info/1r6jA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r6jA/nostruct-align/1r6jA.t04-thin90.a2m.gz, have 90484 columns in 373 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h7cA/nostruct-align/1h7cA.t04-thin90.a2m.gz
# 1h7cA.t04-thin90.a2m with 21 sequences, total weight= 15.7733 avg weight= 0.751108 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h7cA/info/1h7cA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h7cA/nostruct-align/1h7cA.t04-thin90.a2m.gz, have 90587 columns in 374 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1elwA/nostruct-align/1elwA.t04-thin90.a2m.gz
# 1elwA.t04-thin90.a2m with 3762 sequences, total weight= 3762 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.885916 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1elwA/info/1elwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1elwA/nostruct-align/1elwA.t04-thin90.a2m.gz, have 90704 columns in 375 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1aho/nostruct-align/1aho.t04-thin90.a2m.gz
# 1aho.t04-thin90.a2m with 108 sequences, total weight= 10.7827 avg weight= 0.0998395 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1aho/info/1aho.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1aho/nostruct-align/1aho.t04-thin90.a2m.gz, have 90768 columns in 376 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oewA/nostruct-align/1oewA.t04-thin90.a2m.gz
# 1oewA.t04-thin90.a2m with 617 sequences, total weight= 617 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24682 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oewA/info/1oewA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oewA/nostruct-align/1oewA.t04-thin90.a2m.gz, have 91096 columns in 377 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rk6A/nostruct-align/1rk6A.t04-thin90.a2m.gz
# 1rk6A.t04-thin90.a2m with 1333 sequences, total weight= 1333 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.85959 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rk6A/info/1rk6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rk6A/nostruct-align/1rk6A.t04-thin90.a2m.gz, have 91570 columns in 378 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o9iA/nostruct-align/1o9iA.t04-thin90.a2m.gz
# 1o9iA.t04-thin90.a2m with 47 sequences, total weight= 15.8392 avg weight= 0.337005 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o9iA/info/1o9iA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o9iA/nostruct-align/1o9iA.t04-thin90.a2m.gz, have 91836 columns in 379 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jboA/nostruct-align/1jboA.t04-thin90.a2m.gz
# 1jboA.t04-thin90.a2m with 250 sequences, total weight= 33.1709 avg weight= 0.132684 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jboA/info/1jboA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jboA/nostruct-align/1jboA.t04-thin90.a2m.gz, have 91998 columns in 380 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1ne9A/nostruct-align/1ne9A.t04-thin90.a2m.gz
# 1ne9A.t04-thin90.a2m with 250 sequences, total weight= 250 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.908445 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1ne9A/info/1ne9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1ne9A/nostruct-align/1ne9A.t04-thin90.a2m.gz, have 92333 columns in 381 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nwaA/nostruct-align/1nwaA.t04-thin90.a2m.gz
# 1nwaA.t04-thin90.a2m with 253 sequences, total weight= 18.6301 avg weight= 0.0736368 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nwaA/info/1nwaA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nwaA/nostruct-align/1nwaA.t04-thin90.a2m.gz, have 92501 columns in 382 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j83A/nostruct-align/1j83A.t04-thin90.a2m.gz
# 1j83A.t04-thin90.a2m with 14 sequences, total weight= 6.15068 avg weight= 0.439334 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j83A/info/1j83A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j83A/nostruct-align/1j83A.t04-thin90.a2m.gz, have 92681 columns in 383 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kqfA/nostruct-align/1kqfA.t04-thin90.a2m.gz
# 1kqfA.t04-thin90.a2m with 758 sequences, total weight= 758 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10969 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kqfA/info/1kqfA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kqfA/nostruct-align/1kqfA.t04-thin90.a2m.gz, have 93663 columns in 384 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3p/3proC/nostruct-align/3proC.t04-thin90.a2m.gz
# 3proC.t04-thin90.a2m with 22 sequences, total weight= 15.5295 avg weight= 0.705888 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3p/3proC/info/3proC.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/3p/3proC/nostruct-align/3proC.t04-thin90.a2m.gz, have 93813 columns in 385 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mtyB/nostruct-align/1mtyB.t04-thin90.a2m.gz
# 1mtyB.t04-thin90.a2m with 97 sequences, total weight= 73.0116 avg weight= 0.752697 45 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mtyB/info/1mtyB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mtyB/nostruct-align/1mtyB.t04-thin90.a2m.gz, have 94197 columns in 386 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v7rA/nostruct-align/1v7rA.t04-thin90.a2m.gz
# 1v7rA.t04-thin90.a2m with 187 sequences, total weight= 28.0688 avg weight= 0.150101 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v7rA/info/1v7rA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v7rA/nostruct-align/1v7rA.t04-thin90.a2m.gz, have 94383 columns in 387 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54E/nostruct-align/1v54E.t04-thin90.a2m.gz
# 1v54E.t04-thin90.a2m with 17 sequences, total weight= 5.272 avg weight= 0.310117 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54E/info/1v54E.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v54E/nostruct-align/1v54E.t04-thin90.a2m.gz, have 94488 columns in 388 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ujpA/nostruct-align/1ujpA.t04-thin90.a2m.gz
# 1ujpA.t04-thin90.a2m with 313 sequences, total weight= 313 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15904 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ujpA/info/1ujpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ujpA/nostruct-align/1ujpA.t04-thin90.a2m.gz, have 94731 columns in 389 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q4uA/nostruct-align/1q4uA.t04-thin90.a2m.gz
# 1q4uA.t04-thin90.a2m with 593 sequences, total weight= 593 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.916304 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q4uA/info/1q4uA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q4uA/nostruct-align/1q4uA.t04-thin90.a2m.gz, have 94871 columns in 390 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1odzA/nostruct-align/1odzA.t04-thin90.a2m.gz
# 1odzA.t04-thin90.a2m with 51 sequences, total weight= 51 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00273 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1odzA/info/1odzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1odzA/nostruct-align/1odzA.t04-thin90.a2m.gz, have 95250 columns in 391 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h70A/nostruct-align/1h70A.t04-thin90.a2m.gz
# 1h70A.t04-thin90.a2m with 225 sequences, total weight= 225 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11874 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h70A/info/1h70A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h70A/nostruct-align/1h70A.t04-thin90.a2m.gz, have 95505 columns in 392 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nkd/nostruct-align/1nkd.t04-thin90.a2m.gz
# 1nkd.t04-thin90.a2m with 14 sequences, total weight= 4.06887 avg weight= 0.290634 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nkd/info/1nkd.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nkd/nostruct-align/1nkd.t04-thin90.a2m.gz, have 95564 columns in 393 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jatB/nostruct-align/1jatB.t04-thin90.a2m.gz
# 1jatB.t04-thin90.a2m with 472 sequences, total weight= 239.198 avg weight= 0.506775 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30774 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jatB/info/1jatB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jatB/nostruct-align/1jatB.t04-thin90.a2m.gz, have 95696 columns in 394 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ug6A/nostruct-align/1ug6A.t04-thin90.a2m.gz
# 1ug6A.t04-thin90.a2m with 439 sequences, total weight= 83.2479 avg weight= 0.189631 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30179 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ug6A/info/1ug6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ug6A/nostruct-align/1ug6A.t04-thin90.a2m.gz, have 96122 columns in 395 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xfiA/nostruct-align/1xfiA.t04-thin90.a2m.gz
# 1xfiA.t04-thin90.a2m with 80 sequences, total weight= 80 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19479 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xfiA/info/1xfiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xfiA/nostruct-align/1xfiA.t04-thin90.a2m.gz, have 96465 columns in 396 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p4oA/nostruct-align/1p4oA.t04-thin90.a2m.gz
# 1p4oA.t04-thin90.a2m with 1311 sequences, total weight= 86.6128 avg weight= 0.0660662 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32013 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p4oA/info/1p4oA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p4oA/nostruct-align/1p4oA.t04-thin90.a2m.gz, have 96773 columns in 397 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1plc/nostruct-align/1plc.t04-thin90.a2m.gz
# 1plc.t04-thin90.a2m with 185 sequences, total weight= 185 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29488 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1plc/info/1plc.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1plc/nostruct-align/1plc.t04-thin90.a2m.gz, have 96872 columns in 398 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1ajsA/nostruct-align/1ajsA.t04-thin90.a2m.gz
# 1ajsA.t04-thin90.a2m with 2183 sequences, total weight= 2183 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.964115 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1ajsA/info/1ajsA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1ajsA/nostruct-align/1ajsA.t04-thin90.a2m.gz, have 97284 columns in 399 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c3cA/nostruct-align/1c3cA.t04-thin90.a2m.gz
# 1c3cA.t04-thin90.a2m with 587 sequences, total weight= 412.608 avg weight= 0.70291 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30579 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c3cA/info/1c3cA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1c3cA/nostruct-align/1c3cA.t04-thin90.a2m.gz, have 97708 columns in 400 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mzbA/nostruct-align/1mzbA.t04-thin90.a2m.gz
# 1mzbA.t04-thin90.a2m with 325 sequences, total weight= 325 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28614 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mzbA/info/1mzbA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mzbA/nostruct-align/1mzbA.t04-thin90.a2m.gz, have 97841 columns in 401 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1odmA/nostruct-align/1odmA.t04-thin90.a2m.gz
# 1odmA.t04-thin90.a2m with 551 sequences, total weight= 551 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22434 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1odmA/info/1odmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1odmA/nostruct-align/1odmA.t04-thin90.a2m.gz, have 98170 columns in 402 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cmcA/nostruct-align/1cmcA.t04-thin90.a2m.gz
# 1cmcA.t04-thin90.a2m with 9 sequences, total weight= 2.24642 avg weight= 0.249602 9 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cmcA/info/1cmcA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cmcA/nostruct-align/1cmcA.t04-thin90.a2m.gz, have 98274 columns in 403 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c1kA/nostruct-align/1c1kA.t04-thin90.a2m.gz
# 1c1kA.t04-thin90.a2m with 8 sequences, total weight= 4.3472 avg weight= 0.5434 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c1kA/info/1c1kA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1c1kA/nostruct-align/1c1kA.t04-thin90.a2m.gz, have 98491 columns in 404 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o54A/nostruct-align/1o54A.t04-thin90.a2m.gz
# 1o54A.t04-thin90.a2m with 2320 sequences, total weight= 2320 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.805146 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o54A/info/1o54A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o54A/nostruct-align/1o54A.t04-thin90.a2m.gz, have 98756 columns in 405 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oruA/nostruct-align/1oruA.t04-thin90.a2m.gz
# 1oruA.t04-thin90.a2m with 81 sequences, total weight= 67.5794 avg weight= 0.834314 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oruA/info/1oruA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oruA/nostruct-align/1oruA.t04-thin90.a2m.gz, have 98938 columns in 406 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gutA/nostruct-align/1gutA.t04-thin90.a2m.gz
# 1gutA.t04-thin90.a2m with 132 sequences, total weight= 21.701 avg weight= 0.164402 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gutA/info/1gutA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gutA/nostruct-align/1gutA.t04-thin90.a2m.gz, have 99005 columns in 407 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gxmA/nostruct-align/1gxmA.t04-thin90.a2m.gz
# 1gxmA.t04-thin90.a2m with 157 sequences, total weight= 157 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12267 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gxmA/info/1gxmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gxmA/nostruct-align/1gxmA.t04-thin90.a2m.gz, have 99329 columns in 408 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g55A/nostruct-align/1g55A.t04-thin90.a2m.gz
# 1g55A.t04-thin90.a2m with 372 sequences, total weight= 372 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07141 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g55A/info/1g55A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g55A/nostruct-align/1g55A.t04-thin90.a2m.gz, have 99642 columns in 409 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cqxA/nostruct-align/1cqxA.t04-thin90.a2m.gz
# 1cqxA.t04-thin90.a2m with 1237 sequences, total weight= 1237 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.941295 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cqxA/info/1cqxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cqxA/nostruct-align/1cqxA.t04-thin90.a2m.gz, have 100045 columns in 410 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1txlA/nostruct-align/1txlA.t04-thin90.a2m.gz
# 1txlA.t04-thin90.a2m with 23 sequences, total weight= 9.46192 avg weight= 0.411388 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1txlA/info/1txlA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1txlA/nostruct-align/1txlA.t04-thin90.a2m.gz, have 100233 columns in 411 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ud9A/nostruct-align/1ud9A.t04-thin90.a2m.gz
# 1ud9A.t04-thin90.a2m with 144 sequences, total weight= 144 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16051 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ud9A/info/1ud9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ud9A/nostruct-align/1ud9A.t04-thin90.a2m.gz, have 100475 columns in 412 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qjpA/nostruct-align/1qjpA.t04-thin90.a2m.gz
# 1qjpA.t04-thin90.a2m with 207 sequences, total weight= 207 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26935 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qjpA/info/1qjpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qjpA/nostruct-align/1qjpA.t04-thin90.a2m.gz, have 100612 columns in 413 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1of8A/nostruct-align/1of8A.t04-thin90.a2m.gz
# 1of8A.t04-thin90.a2m with 292 sequences, total weight= 36.0109 avg weight= 0.123325 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1of8A/info/1of8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1of8A/nostruct-align/1of8A.t04-thin90.a2m.gz, have 100951 columns in 414 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ufyA/nostruct-align/1ufyA.t04-thin90.a2m.gz
# 1ufyA.t04-thin90.a2m with 31 sequences, total weight= 7.26257 avg weight= 0.234276 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ufyA/info/1ufyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ufyA/nostruct-align/1ufyA.t04-thin90.a2m.gz, have 101072 columns in 415 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qz5A/nostruct-align/1qz5A.t04-thin90.a2m.gz
# 1qz5A.t04-thin90.a2m with 627 sequences, total weight= 285.758 avg weight= 0.455755 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30894 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qz5A/info/1qz5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qz5A/nostruct-align/1qz5A.t04-thin90.a2m.gz, have 101431 columns in 416 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v7wA/nostruct-align/1v7wA.t04-thin90.a2m.gz
# 1v7wA.t04-thin90.a2m with 709 sequences, total weight= 709 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.761675 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v7wA/info/1v7wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v7wA/nostruct-align/1v7wA.t04-thin90.a2m.gz, have 102210 columns in 417 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mk0A/nostruct-align/1mk0A.t04-thin90.a2m.gz
# 1mk0A.t04-thin90.a2m with 4 sequences, total weight= 3.95112 avg weight= 0.98778 9 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mk0A/info/1mk0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mk0A/nostruct-align/1mk0A.t04-thin90.a2m.gz, have 102307 columns in 418 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1euwA/nostruct-align/1euwA.t04-thin90.a2m.gz
# 1euwA.t04-thin90.a2m with 418 sequences, total weight= 418 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22333 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1euwA/info/1euwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1euwA/nostruct-align/1euwA.t04-thin90.a2m.gz, have 102443 columns in 419 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nnfA/nostruct-align/1nnfA.t04-thin90.a2m.gz
# 1nnfA.t04-thin90.a2m with 1432 sequences, total weight= 1432 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.853583 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nnfA/info/1nnfA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nnfA/nostruct-align/1nnfA.t04-thin90.a2m.gz, have 102751 columns in 420 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1ah7/nostruct-align/1ah7.t04-thin90.a2m.gz
# 1ah7.t04-thin90.a2m with 78 sequences, total weight= 78 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15905 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1ah7/info/1ah7.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1ah7/nostruct-align/1ah7.t04-thin90.a2m.gz, have 102996 columns in 421 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i88A/nostruct-align/1i88A.t04-thin90.a2m.gz
# 1i88A.t04-thin90.a2m with 2145 sequences, total weight= 2145 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10346 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i88A/info/1i88A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i88A/nostruct-align/1i88A.t04-thin90.a2m.gz, have 103385 columns in 422 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iyhA/nostruct-align/1iyhA.t04-thin90.a2m.gz
# 1iyhA.t04-thin90.a2m with 1799 sequences, total weight= 1799 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01219 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iyhA/info/1iyhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iyhA/nostruct-align/1iyhA.t04-thin90.a2m.gz, have 103583 columns in 423 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qksA/nostruct-align/1qksA.t04-thin90.a2m.gz
# 1qksA.t04-thin90.a2m with 2093 sequences, total weight= 2093 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.948686 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qksA/info/1qksA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qksA/nostruct-align/1qksA.t04-thin90.a2m.gz, have 104142 columns in 424 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3c/3cla/nostruct-align/3cla.t04-thin90.a2m.gz
# 3cla.t04-thin90.a2m with 381 sequences, total weight= 136.881 avg weight= 0.359268 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30417 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3c/3cla/info/3cla.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/3c/3cla/nostruct-align/3cla.t04-thin90.a2m.gz, have 104355 columns in 425 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rzhH/nostruct-align/1rzhH.t04-thin90.a2m.gz
# 1rzhH.t04-thin90.a2m with 10 sequences, total weight= 4.39573 avg weight= 0.439573 17 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rzhH/info/1rzhH.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rzhH/nostruct-align/1rzhH.t04-thin90.a2m.gz, have 104593 columns in 426 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p1mA/nostruct-align/1p1mA.t04-thin90.a2m.gz
# 1p1mA.t04-thin90.a2m with 1369 sequences, total weight= 1369 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.884409 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p1mA/info/1p1mA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p1mA/nostruct-align/1p1mA.t04-thin90.a2m.gz, have 104997 columns in 427 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n9pA/nostruct-align/1n9pA.t04-thin90.a2m.gz
# 1n9pA.t04-thin90.a2m with 50 sequences, total weight= 19.7875 avg weight= 0.39575 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n9pA/info/1n9pA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n9pA/nostruct-align/1n9pA.t04-thin90.a2m.gz, have 105194 columns in 428 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kqwA/nostruct-align/1kqwA.t04-thin90.a2m.gz
# 1kqwA.t04-thin90.a2m with 200 sequences, total weight= 36.296 avg weight= 0.18148 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kqwA/info/1kqwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kqwA/nostruct-align/1kqwA.t04-thin90.a2m.gz, have 105328 columns in 429 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tp6A/nostruct-align/1tp6A.t04-thin90.a2m.gz
# 1tp6A.t04-thin90.a2m with 11 sequences, total weight= 6.36856 avg weight= 0.57896 20 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tp6A/info/1tp6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tp6A/nostruct-align/1tp6A.t04-thin90.a2m.gz, have 105454 columns in 430 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1erw/nostruct-align/1erw.t04-thin90.a2m.gz
# 1erw.t04-thin90.a2m with 2323 sequences, total weight= 2323 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09503 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1erw/info/1erw.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1erw/nostruct-align/1erw.t04-thin90.a2m.gz, have 105559 columns in 431 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q0pA/nostruct-align/1q0pA.t04-thin90.a2m.gz
# 1q0pA.t04-thin90.a2m with 949 sequences, total weight= 949 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05612 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q0pA/info/1q0pA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q0pA/nostruct-align/1q0pA.t04-thin90.a2m.gz, have 105751 columns in 432 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dszA/nostruct-align/1dszA.t04-thin90.a2m.gz
# 1dszA.t04-thin90.a2m with 596 sequences, total weight= 39.7632 avg weight= 0.0667167 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30112 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dszA/info/1dszA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dszA/nostruct-align/1dszA.t04-thin90.a2m.gz, have 105826 columns in 433 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vziA/nostruct-align/1vziA.t04-thin90.a2m.gz
# 1vziA.t04-thin90.a2m with 29 sequences, total weight= 13.0497 avg weight= 0.449989 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vziA/info/1vziA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vziA/nostruct-align/1vziA.t04-thin90.a2m.gz, have 105951 columns in 434 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fxlA/nostruct-align/1fxlA.t04-thin90.a2m.gz
# 1fxlA.t04-thin90.a2m with 1839 sequences, total weight= 1839 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13649 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fxlA/info/1fxlA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fxlA/nostruct-align/1fxlA.t04-thin90.a2m.gz, have 106118 columns in 435 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gmxA/nostruct-align/1gmxA.t04-thin90.a2m.gz
# 1gmxA.t04-thin90.a2m with 1239 sequences, total weight= 1239 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06504 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gmxA/info/1gmxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gmxA/nostruct-align/1gmxA.t04-thin90.a2m.gz, have 106226 columns in 436 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vybA/nostruct-align/1vybA.t04-thin90.a2m.gz
# 1vybA.t04-thin90.a2m with 1140 sequences, total weight= 1140 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.848252 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vybA/info/1vybA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vybA/nostruct-align/1vybA.t04-thin90.a2m.gz, have 106462 columns in 437 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jetA/nostruct-align/1jetA.t04-thin90.a2m.gz
# 1jetA.t04-thin90.a2m with 1054 sequences, total weight= 1054 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04289 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jetA/info/1jetA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jetA/nostruct-align/1jetA.t04-thin90.a2m.gz, have 106979 columns in 438 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gbs/nostruct-align/1gbs.t04-thin90.a2m.gz
# 1gbs.t04-thin90.a2m with 39 sequences, total weight= 29.7602 avg weight= 0.763083 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gbs/info/1gbs.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gbs/nostruct-align/1gbs.t04-thin90.a2m.gz, have 107164 columns in 439 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oohA/nostruct-align/1oohA.t04-thin90.a2m.gz
# 1oohA.t04-thin90.a2m with 191 sequences, total weight= 191 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.947103 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oohA/info/1oohA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oohA/nostruct-align/1oohA.t04-thin90.a2m.gz, have 107290 columns in 440 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pz4A/nostruct-align/1pz4A.t04-thin90.a2m.gz
# 1pz4A.t04-thin90.a2m with 86 sequences, total weight= 75.6615 avg weight= 0.879785 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pz4A/info/1pz4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pz4A/nostruct-align/1pz4A.t04-thin90.a2m.gz, have 107403 columns in 441 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d4oA/nostruct-align/1d4oA.t04-thin90.a2m.gz
# 1d4oA.t04-thin90.a2m with 73 sequences, total weight= 4.75161 avg weight= 0.0650905 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d4oA/info/1d4oA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d4oA/nostruct-align/1d4oA.t04-thin90.a2m.gz, have 107580 columns in 442 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qmvA/nostruct-align/1qmvA.t04-thin90.a2m.gz
# 1qmvA.t04-thin90.a2m with 1636 sequences, total weight= 1636 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0899 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qmvA/info/1qmvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qmvA/nostruct-align/1qmvA.t04-thin90.a2m.gz, have 107777 columns in 443 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qgiA/nostruct-align/1qgiA.t04-thin90.a2m.gz
# 1qgiA.t04-thin90.a2m with 19 sequences, total weight= 13.6698 avg weight= 0.719462 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qgiA/info/1qgiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qgiA/nostruct-align/1qgiA.t04-thin90.a2m.gz, have 108036 columns in 444 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gk9A/nostruct-align/1gk9A.t04-thin90.a2m.gz
# 1gk9A.t04-thin90.a2m with 78 sequences, total weight= 78 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24908 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gk9A/info/1gk9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gk9A/nostruct-align/1gk9A.t04-thin90.a2m.gz, have 108244 columns in 445 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dy5A/nostruct-align/1dy5A.t04-thin90.a2m.gz
# 1dy5A.t04-thin90.a2m with 174 sequences, total weight= 28.7343 avg weight= 0.165139 45 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dy5A/info/1dy5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dy5A/nostruct-align/1dy5A.t04-thin90.a2m.gz, have 108368 columns in 446 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mdc/nostruct-align/1mdc.t04-thin90.a2m.gz
# 1mdc.t04-thin90.a2m with 144 sequences, total weight= 30.8006 avg weight= 0.213893 42 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mdc/info/1mdc.stride-mixed.near-backbone-11
WARNING: skipping h, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mdc/nostruct-align/1mdc.t04-thin90.a2m.gz, have 108499 columns in 447 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sfsA/nostruct-align/1sfsA.t04-thin90.a2m.gz
# 1sfsA.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.993228 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sfsA/info/1sfsA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sfsA/nostruct-align/1sfsA.t04-thin90.a2m.gz, have 108712 columns in 448 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oi0A/nostruct-align/1oi0A.t04-thin90.a2m.gz
# 1oi0A.t04-thin90.a2m with 68 sequences, total weight= 68 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22193 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oi0A/info/1oi0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oi0A/nostruct-align/1oi0A.t04-thin90.a2m.gz, have 108820 columns in 449 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhvA/nostruct-align/1vhvA.t04-thin90.a2m.gz
# 1vhvA.t04-thin90.a2m with 779 sequences, total weight= 779 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11469 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhvA/info/1vhvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vhvA/nostruct-align/1vhvA.t04-thin90.a2m.gz, have 109071 columns in 450 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jf3A/nostruct-align/1jf3A.t04-thin90.a2m.gz
# 1jf3A.t04-thin90.a2m with 801 sequences, total weight= 801 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26216 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jf3A/info/1jf3A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jf3A/nostruct-align/1jf3A.t04-thin90.a2m.gz, have 109218 columns in 451 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mkkA/nostruct-align/1mkkA.t04-thin90.a2m.gz
# 1mkkA.t04-thin90.a2m with 42 sequences, total weight= 16.9754 avg weight= 0.404175 37 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mkkA/info/1mkkA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mkkA/nostruct-align/1mkkA.t04-thin90.a2m.gz, have 109311 columns in 452 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pyfA/nostruct-align/1pyfA.t04-thin90.a2m.gz
# 1pyfA.t04-thin90.a2m with 1307 sequences, total weight= 1307 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26138 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pyfA/info/1pyfA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pyfA/nostruct-align/1pyfA.t04-thin90.a2m.gz, have 109622 columns in 453 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n55A/nostruct-align/1n55A.t04-thin90.a2m.gz
# 1n55A.t04-thin90.a2m with 322 sequences, total weight= 27.2392 avg weight= 0.0845937 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n55A/info/1n55A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n55A/nostruct-align/1n55A.t04-thin90.a2m.gz, have 109871 columns in 454 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1aba/nostruct-align/1aba.t04-thin90.a2m.gz
# 1aba.t04-thin90.a2m with 370 sequences, total weight= 177.284 avg weight= 0.479147 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30433 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1aba/info/1aba.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1aba/nostruct-align/1aba.t04-thin90.a2m.gz, have 109958 columns in 455 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1ql0A/nostruct-align/1ql0A.t04-thin90.a2m.gz
# 1ql0A.t04-thin90.a2m with 115 sequences, total weight= 115 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14097 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1ql0A/info/1ql0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1ql0A/nostruct-align/1ql0A.t04-thin90.a2m.gz, have 110199 columns in 456 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gttA/nostruct-align/1gttA.t04-thin90.a2m.gz
# 1gttA.t04-thin90.a2m with 528 sequences, total weight= 35.6398 avg weight= 0.0674997 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gttA/info/1gttA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gttA/nostruct-align/1gttA.t04-thin90.a2m.gz, have 110620 columns in 457 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q9uA/nostruct-align/1q9uA.t04-thin90.a2m.gz
# 1q9uA.t04-thin90.a2m with 58 sequences, total weight= 58 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1295 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q9uA/info/1q9uA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q9uA/nostruct-align/1q9uA.t04-thin90.a2m.gz, have 110748 columns in 458 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j71A/nostruct-align/1j71A.t04-thin90.a2m.gz
# 1j71A.t04-thin90.a2m with 670 sequences, total weight= 670 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23242 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j71A/info/1j71A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j71A/nostruct-align/1j71A.t04-thin90.a2m.gz, have 111082 columns in 459 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h32A/nostruct-align/1h32A.t04-thin90.a2m.gz
# 1h32A.t04-thin90.a2m with 445 sequences, total weight= 445 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00901 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h32A/info/1h32A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h32A/nostruct-align/1h32A.t04-thin90.a2m.gz, have 111343 columns in 460 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gwuA/nostruct-align/1gwuA.t04-thin90.a2m.gz
# 1gwuA.t04-thin90.a2m with 599 sequences, total weight= 97.5615 avg weight= 0.162874 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30351 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gwuA/info/1gwuA.stride-mixed.near-backbone-11
WARNING: skipping e, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gwuA/nostruct-align/1gwuA.t04-thin90.a2m.gz, have 111649 columns in 461 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q8fA/nostruct-align/1q8fA.t04-thin90.a2m.gz
# 1q8fA.t04-thin90.a2m with 179 sequences, total weight= 175.383 avg weight= 0.979796 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q8fA/info/1q8fA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q8fA/nostruct-align/1q8fA.t04-thin90.a2m.gz, have 111957 columns in 462 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3l/3lzt/nostruct-align/3lzt.t04-thin90.a2m.gz
# 3lzt.t04-thin90.a2m with 133 sequences, total weight= 15.0391 avg weight= 0.113076 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3l/3lzt/info/3lzt.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/3l/3lzt/nostruct-align/3lzt.t04-thin90.a2m.gz, have 112086 columns in 463 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kmvA/nostruct-align/1kmvA.t04-thin90.a2m.gz
# 1kmvA.t04-thin90.a2m with 367 sequences, total weight= 367 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1435 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kmvA/info/1kmvA.stride-mixed.near-backbone-11
WARNING: skipping b, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kmvA/nostruct-align/1kmvA.t04-thin90.a2m.gz, have 112271 columns in 464 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nrjA/nostruct-align/1nrjA.t04-thin90.a2m.gz
# 1nrjA.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.893292 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nrjA/info/1nrjA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nrjA/nostruct-align/1nrjA.t04-thin90.a2m.gz, have 112418 columns in 465 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oi6A/nostruct-align/1oi6A.t04-thin90.a2m.gz
# 1oi6A.t04-thin90.a2m with 245 sequences, total weight= 55.7743 avg weight= 0.22765 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oi6A/info/1oi6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oi6A/nostruct-align/1oi6A.t04-thin90.a2m.gz, have 112620 columns in 466 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oq1A/nostruct-align/1oq1A.t04-thin90.a2m.gz
# 1oq1A.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.61905 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oq1A/info/1oq1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oq1A/nostruct-align/1oq1A.t04-thin90.a2m.gz, have 112843 columns in 467 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qstA/nostruct-align/1qstA.t04-thin90.a2m.gz
# 1qstA.t04-thin90.a2m with 2412 sequences, total weight= 2412 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.828861 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qstA/info/1qstA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qstA/nostruct-align/1qstA.t04-thin90.a2m.gz, have 113003 columns in 468 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nxmA/nostruct-align/1nxmA.t04-thin90.a2m.gz
# 1nxmA.t04-thin90.a2m with 246 sequences, total weight= 58.5524 avg weight= 0.238018 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nxmA/info/1nxmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nxmA/nostruct-align/1nxmA.t04-thin90.a2m.gz, have 113197 columns in 469 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s9rA/nostruct-align/1s9rA.t04-thin90.a2m.gz
# 1s9rA.t04-thin90.a2m with 215 sequences, total weight= 215 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13177 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s9rA/info/1s9rA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s9rA/nostruct-align/1s9rA.t04-thin90.a2m.gz, have 113606 columns in 470 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k5nB/nostruct-align/1k5nB.t04-thin90.a2m.gz
# 1k5nB.t04-thin90.a2m with 394 sequences, total weight= 23.722 avg weight= 0.0602082 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k5nB/info/1k5nB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k5nB/nostruct-align/1k5nB.t04-thin90.a2m.gz, have 113706 columns in 471 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eaqA/nostruct-align/1eaqA.t04-thin90.a2m.gz
# 1eaqA.t04-thin90.a2m with 19 sequences, total weight= 3.9227 avg weight= 0.206458 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eaqA/info/1eaqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eaqA/nostruct-align/1eaqA.t04-thin90.a2m.gz, have 113830 columns in 472 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1ls1A/nostruct-align/1ls1A.t04-thin90.a2m.gz
# 1ls1A.t04-thin90.a2m with 1909 sequences, total weight= 1909 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.905865 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1ls1A/info/1ls1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1ls1A/nostruct-align/1ls1A.t04-thin90.a2m.gz, have 114119 columns in 473 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hp1A/nostruct-align/1hp1A.t04-thin90.a2m.gz
# 1hp1A.t04-thin90.a2m with 1038 sequences, total weight= 1038 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.897857 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hp1A/info/1hp1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hp1A/nostruct-align/1hp1A.t04-thin90.a2m.gz, have 114635 columns in 474 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3s/3seb/nostruct-align/3seb.t04-thin90.a2m.gz
# 3seb.t04-thin90.a2m with 88 sequences, total weight= 46.3777 avg weight= 0.52702 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3s/3seb/info/3seb.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/3s/3seb/nostruct-align/3seb.t04-thin90.a2m.gz, have 114873 columns in 475 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p5vB/nostruct-align/1p5vB.t04-thin90.a2m.gz
# 1p5vB.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.614906 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p5vB/info/1p5vB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p5vB/nostruct-align/1p5vB.t04-thin90.a2m.gz, have 115009 columns in 476 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nq7A/nostruct-align/1nq7A.t04-thin90.a2m.gz
# 1nq7A.t04-thin90.a2m with 912 sequences, total weight= 912 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.860266 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nq7A/info/1nq7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nq7A/nostruct-align/1nq7A.t04-thin90.a2m.gz, have 115253 columns in 477 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1is3A/nostruct-align/1is3A.t04-thin90.a2m.gz
# 1is3A.t04-thin90.a2m with 212 sequences, total weight= 212 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24272 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1is3A/info/1is3A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1is3A/nostruct-align/1is3A.t04-thin90.a2m.gz, have 115387 columns in 478 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nkr/nostruct-align/1nkr.t04-thin90.a2m.gz
# 1nkr.t04-thin90.a2m with 2939 sequences, total weight= 2939 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.934044 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nkr/info/1nkr.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nkr/nostruct-align/1nkr.t04-thin90.a2m.gz, have 115582 columns in 479 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vh4A/nostruct-align/1vh4A.t04-thin90.a2m.gz
# 1vh4A.t04-thin90.a2m with 231 sequences, total weight= 231 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23958 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vh4A/info/1vh4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vh4A/nostruct-align/1vh4A.t04-thin90.a2m.gz, have 115992 columns in 480 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o97C/nostruct-align/1o97C.t04-thin90.a2m.gz
# 1o97C.t04-thin90.a2m with 222 sequences, total weight= 68.4772 avg weight= 0.308456 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30056 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o97C/info/1o97C.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o97C/nostruct-align/1o97C.t04-thin90.a2m.gz, have 116243 columns in 481 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qreA/nostruct-align/1qreA.t04-thin90.a2m.gz
# 1qreA.t04-thin90.a2m with 1340 sequences, total weight= 1340 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04593 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qreA/info/1qreA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qreA/nostruct-align/1qreA.t04-thin90.a2m.gz, have 116453 columns in 482 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ow4A/nostruct-align/1ow4A.t04-thin90.a2m.gz
# 1ow4A.t04-thin90.a2m with 12 sequences, total weight= 12 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15571 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ow4A/info/1ow4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ow4A/nostruct-align/1ow4A.t04-thin90.a2m.gz, have 116573 columns in 483 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gqiA/nostruct-align/1gqiA.t04-thin90.a2m.gz
# 1gqiA.t04-thin90.a2m with 23 sequences, total weight= 7.00063 avg weight= 0.304375 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gqiA/info/1gqiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gqiA/nostruct-align/1gqiA.t04-thin90.a2m.gz, have 117281 columns in 484 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mw9X/nostruct-align/1mw9X.t04-thin90.a2m.gz
# 1mw9X.t04-thin90.a2m with 371 sequences, total weight= 69.4842 avg weight= 0.187289 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30183 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mw9X/info/1mw9X.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mw9X/nostruct-align/1mw9X.t04-thin90.a2m.gz, have 117837 columns in 485 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rwzA/nostruct-align/1rwzA.t04-thin90.a2m.gz
# 1rwzA.t04-thin90.a2m with 129 sequences, total weight= 129 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18245 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rwzA/info/1rwzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rwzA/nostruct-align/1rwzA.t04-thin90.a2m.gz, have 118081 columns in 486 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gmiA/nostruct-align/1gmiA.t04-thin90.a2m.gz
# 1gmiA.t04-thin90.a2m with 938 sequences, total weight= 938 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01112 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gmiA/info/1gmiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gmiA/nostruct-align/1gmiA.t04-thin90.a2m.gz, have 118216 columns in 487 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n57A/nostruct-align/1n57A.t04-thin90.a2m.gz
# 1n57A.t04-thin90.a2m with 565 sequences, total weight= 565 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11023 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n57A/info/1n57A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n57A/nostruct-align/1n57A.t04-thin90.a2m.gz, have 118495 columns in 488 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h12A/nostruct-align/1h12A.t04-thin90.a2m.gz
# 1h12A.t04-thin90.a2m with 55 sequences, total weight= 55 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12838 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h12A/info/1h12A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h12A/nostruct-align/1h12A.t04-thin90.a2m.gz, have 118899 columns in 489 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kqfC/nostruct-align/1kqfC.t04-thin90.a2m.gz
# 1kqfC.t04-thin90.a2m with 202 sequences, total weight= 202 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08525 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kqfC/info/1kqfC.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kqfC/nostruct-align/1kqfC.t04-thin90.a2m.gz, have 119115 columns in 490 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nykA/nostruct-align/1nykA.t04-thin90.a2m.gz
# 1nykA.t04-thin90.a2m with 831 sequences, total weight= 831 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.976998 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nykA/info/1nykA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nykA/nostruct-align/1nykA.t04-thin90.a2m.gz, have 119271 columns in 491 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t4bA/nostruct-align/1t4bA.t04-thin90.a2m.gz
# 1t4bA.t04-thin90.a2m with 1450 sequences, total weight= 1450 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2475 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t4bA/info/1t4bA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t4bA/nostruct-align/1t4bA.t04-thin90.a2m.gz, have 119638 columns in 492 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mj5A/nostruct-align/1mj5A.t04-thin90.a2m.gz
# 1mj5A.t04-thin90.a2m with 2350 sequences, total weight= 2350 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.753523 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mj5A/info/1mj5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mj5A/nostruct-align/1mj5A.t04-thin90.a2m.gz, have 119935 columns in 493 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fsgA/nostruct-align/1fsgA.t04-thin90.a2m.gz
# 1fsgA.t04-thin90.a2m with 1392 sequences, total weight= 1392 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.978132 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fsgA/info/1fsgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fsgA/nostruct-align/1fsgA.t04-thin90.a2m.gz, have 120168 columns in 494 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uuqA/nostruct-align/1uuqA.t04-thin90.a2m.gz
# 1uuqA.t04-thin90.a2m with 1379 sequences, total weight= 1379 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.820665 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uuqA/info/1uuqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uuqA/nostruct-align/1uuqA.t04-thin90.a2m.gz, have 120578 columns in 495 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kshB/nostruct-align/1kshB.t04-thin90.a2m.gz
# 1kshB.t04-thin90.a2m with 17 sequences, total weight= 8.08343 avg weight= 0.475496 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kshB/info/1kshB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kshB/nostruct-align/1kshB.t04-thin90.a2m.gz, have 120720 columns in 496 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1od6A/nostruct-align/1od6A.t04-thin90.a2m.gz
# 1od6A.t04-thin90.a2m with 758 sequences, total weight= 758 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01599 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1od6A/info/1od6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1od6A/nostruct-align/1od6A.t04-thin90.a2m.gz, have 120875 columns in 497 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hxiA/nostruct-align/1hxiA.t04-thin90.a2m.gz
# 1hxiA.t04-thin90.a2m with 2811 sequences, total weight= 2811 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.970145 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hxiA/info/1hxiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hxiA/nostruct-align/1hxiA.t04-thin90.a2m.gz, have 120987 columns in 498 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a4iA/nostruct-align/1a4iA.t04-thin90.a2m.gz
# 1a4iA.t04-thin90.a2m with 474 sequences, total weight= 337.66 avg weight= 0.712363 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30393 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a4iA/info/1a4iA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a4iA/nostruct-align/1a4iA.t04-thin90.a2m.gz, have 121272 columns in 499 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hq1A/nostruct-align/1hq1A.t04-thin90.a2m.gz
# 1hq1A.t04-thin90.a2m with 172 sequences, total weight= 12.9391 avg weight= 0.0752271 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hq1A/info/1hq1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hq1A/nostruct-align/1hq1A.t04-thin90.a2m.gz, have 121348 columns in 500 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j31A/nostruct-align/1j31A.t04-thin90.a2m.gz
# 1j31A.t04-thin90.a2m with 687 sequences, total weight= 687 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09146 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j31A/info/1j31A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j31A/nostruct-align/1j31A.t04-thin90.a2m.gz, have 121610 columns in 501 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c5eA/nostruct-align/1c5eA.t04-thin90.a2m.gz
# 1c5eA.t04-thin90.a2m with 7 sequences, total weight= 3.87668 avg weight= 0.553811 14 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c5eA/info/1c5eA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1c5eA/nostruct-align/1c5eA.t04-thin90.a2m.gz, have 121705 columns in 502 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r6dA/nostruct-align/1r6dA.t04-thin90.a2m.gz
# 1r6dA.t04-thin90.a2m with 2236 sequences, total weight= 2236 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07634 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r6dA/info/1r6dA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r6dA/nostruct-align/1r6dA.t04-thin90.a2m.gz, have 122027 columns in 503 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p3dA/nostruct-align/1p3dA.t04-thin90.a2m.gz
# 1p3dA.t04-thin90.a2m with 913 sequences, total weight= 913 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08338 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p3dA/info/1p3dA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p3dA/nostruct-align/1p3dA.t04-thin90.a2m.gz, have 122490 columns in 504 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d0qA/nostruct-align/1d0qA.t04-thin90.a2m.gz
# 1d0qA.t04-thin90.a2m with 151 sequences, total weight= 23.4987 avg weight= 0.15562 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d0qA/info/1d0qA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d0qA/nostruct-align/1d0qA.t04-thin90.a2m.gz, have 122592 columns in 505 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2s/2sak/nostruct-align/2sak.t04-thin90.a2m.gz
# 2sak.t04-thin90.a2m with 5 sequences, total weight= 5 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.238 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2s/2sak/info/2sak.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2s/2sak/nostruct-align/2sak.t04-thin90.a2m.gz, have 122713 columns in 506 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1msk/nostruct-align/1msk.t04-thin90.a2m.gz
# 1msk.t04-thin90.a2m with 90 sequences, total weight= 22.4791 avg weight= 0.249768 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1msk/info/1msk.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1msk/nostruct-align/1msk.t04-thin90.a2m.gz, have 123040 columns in 507 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1npyA/nostruct-align/1npyA.t04-thin90.a2m.gz
# 1npyA.t04-thin90.a2m with 470 sequences, total weight= 470 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16348 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1npyA/info/1npyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1npyA/nostruct-align/1npyA.t04-thin90.a2m.gz, have 123309 columns in 508 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dkiA/nostruct-align/1dkiA.t04-thin90.a2m.gz
# 1dkiA.t04-thin90.a2m with 8 sequences, total weight= 8 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22506 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dkiA/info/1dkiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dkiA/nostruct-align/1dkiA.t04-thin90.a2m.gz, have 123612 columns in 509 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fs7A/nostruct-align/1fs7A.t04-thin90.a2m.gz
# 1fs7A.t04-thin90.a2m with 297 sequences, total weight= 297 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.882959 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fs7A/info/1fs7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fs7A/nostruct-align/1fs7A.t04-thin90.a2m.gz, have 124083 columns in 510 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eazA/nostruct-align/1eazA.t04-thin90.a2m.gz
# 1eazA.t04-thin90.a2m with 724 sequences, total weight= 724 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.930424 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eazA/info/1eazA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eazA/nostruct-align/1eazA.t04-thin90.a2m.gz, have 124186 columns in 511 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1ds1A/nostruct-align/1ds1A.t04-thin90.a2m.gz
# 1ds1A.t04-thin90.a2m with 287 sequences, total weight= 287 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.973365 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1ds1A/info/1ds1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1ds1A/nostruct-align/1ds1A.t04-thin90.a2m.gz, have 124509 columns in 512 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g8qA/nostruct-align/1g8qA.t04-thin90.a2m.gz
# 1g8qA.t04-thin90.a2m with 23 sequences, total weight= 11.4998 avg weight= 0.49999 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g8qA/info/1g8qA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g8qA/nostruct-align/1g8qA.t04-thin90.a2m.gz, have 124599 columns in 513 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c7kA/nostruct-align/1c7kA.t04-thin90.a2m.gz
# 1c7kA.t04-thin90.a2m with 239 sequences, total weight= 151.623 avg weight= 0.634408 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30228 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c7kA/info/1c7kA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1c7kA/nostruct-align/1c7kA.t04-thin90.a2m.gz, have 124731 columns in 514 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mwpA/nostruct-align/1mwpA.t04-thin90.a2m.gz
# 1mwpA.t04-thin90.a2m with 16 sequences, total weight= 4.87683 avg weight= 0.304802 19 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mwpA/info/1mwpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mwpA/nostruct-align/1mwpA.t04-thin90.a2m.gz, have 124827 columns in 515 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pjxA/nostruct-align/1pjxA.t04-thin90.a2m.gz
# 1pjxA.t04-thin90.a2m with 2434 sequences, total weight= 2434 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.795667 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pjxA/info/1pjxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pjxA/nostruct-align/1pjxA.t04-thin90.a2m.gz, have 125141 columns in 516 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kicA/nostruct-align/1kicA.t04-thin90.a2m.gz
# 1kicA.t04-thin90.a2m with 172 sequences, total weight= 172 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27869 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kicA/info/1kicA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kicA/nostruct-align/1kicA.t04-thin90.a2m.gz, have 125458 columns in 517 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1npsA/nostruct-align/1npsA.t04-thin90.a2m.gz
# 1npsA.t04-thin90.a2m with 5 sequences, total weight= 3.43886 avg weight= 0.687772 11 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1npsA/info/1npsA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1npsA/nostruct-align/1npsA.t04-thin90.a2m.gz, have 125546 columns in 518 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p1xA/nostruct-align/1p1xA.t04-thin90.a2m.gz
# 1p1xA.t04-thin90.a2m with 135 sequences, total weight= 37.9191 avg weight= 0.280882 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p1xA/info/1p1xA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p1xA/nostruct-align/1p1xA.t04-thin90.a2m.gz, have 125796 columns in 519 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jndA/nostruct-align/1jndA.t04-thin90.a2m.gz
# 1jndA.t04-thin90.a2m with 673 sequences, total weight= 673 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05285 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jndA/info/1jndA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jndA/nostruct-align/1jndA.t04-thin90.a2m.gz, have 126196 columns in 520 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kw4A/nostruct-align/1kw4A.t04-thin90.a2m.gz
# 1kw4A.t04-thin90.a2m with 53 sequences, total weight= 10.5515 avg weight= 0.199085 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kw4A/info/1kw4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kw4A/nostruct-align/1kw4A.t04-thin90.a2m.gz, have 126266 columns in 521 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mj4A/nostruct-align/1mj4A.t04-thin90.a2m.gz
# 1mj4A.t04-thin90.a2m with 293 sequences, total weight= 44.1862 avg weight= 0.150806 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30095 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mj4A/info/1mj4A.stride-mixed.near-backbone-11
WARNING: skipping a, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mj4A/nostruct-align/1mj4A.t04-thin90.a2m.gz, have 126345 columns in 522 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m4jA/nostruct-align/1m4jA.t04-thin90.a2m.gz
# 1m4jA.t04-thin90.a2m with 137 sequences, total weight= 137 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.274 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m4jA/info/1m4jA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m4jA/nostruct-align/1m4jA.t04-thin90.a2m.gz, have 126478 columns in 523 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rwhA/nostruct-align/1rwhA.t04-thin90.a2m.gz
# 1rwhA.t04-thin90.a2m with 59 sequences, total weight= 59 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13439 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rwhA/info/1rwhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rwhA/nostruct-align/1rwhA.t04-thin90.a2m.gz, have 127232 columns in 524 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j7xA/nostruct-align/1j7xA.t04-thin90.a2m.gz
# 1j7xA.t04-thin90.a2m with 405 sequences, total weight= 405 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19148 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j7xA/info/1j7xA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j7xA/nostruct-align/1j7xA.t04-thin90.a2m.gz, have 127534 columns in 525 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mnnA/nostruct-align/1mnnA.t04-thin90.a2m.gz
# 1mnnA.t04-thin90.a2m with 20 sequences, total weight= 20 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26056 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mnnA/info/1mnnA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mnnA/nostruct-align/1mnnA.t04-thin90.a2m.gz, have 127824 columns in 526 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mdoA/nostruct-align/1mdoA.t04-thin90.a2m.gz
# 1mdoA.t04-thin90.a2m with 2150 sequences, total weight= 2150 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03063 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mdoA/info/1mdoA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mdoA/nostruct-align/1mdoA.t04-thin90.a2m.gz, have 128189 columns in 527 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r9lA/nostruct-align/1r9lA.t04-thin90.a2m.gz
# 1r9lA.t04-thin90.a2m with 690 sequences, total weight= 690 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.968083 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r9lA/info/1r9lA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r9lA/nostruct-align/1r9lA.t04-thin90.a2m.gz, have 128498 columns in 528 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f1mA/nostruct-align/1f1mA.t04-thin90.a2m.gz
# 1f1mA.t04-thin90.a2m with 119 sequences, total weight= 5.94903 avg weight= 0.0499919 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f1mA/info/1f1mA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f1mA/nostruct-align/1f1mA.t04-thin90.a2m.gz, have 128660 columns in 529 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vkkA/nostruct-align/1vkkA.t04-thin90.a2m.gz
# 1vkkA.t04-thin90.a2m with 199 sequences, total weight= 160.158 avg weight= 0.804814 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30124 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vkkA/info/1vkkA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vkkA/nostruct-align/1vkkA.t04-thin90.a2m.gz, have 128797 columns in 530 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pp0A/nostruct-align/1pp0A.t04-thin90.a2m.gz
# 1pp0A.t04-thin90.a2m with 11 sequences, total weight= 6.73682 avg weight= 0.612438 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pp0A/info/1pp0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pp0A/nostruct-align/1pp0A.t04-thin90.a2m.gz, have 128988 columns in 531 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r2qA/nostruct-align/1r2qA.t04-thin90.a2m.gz
# 1r2qA.t04-thin90.a2m with 1441 sequences, total weight= 1441 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27411 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r2qA/info/1r2qA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r2qA/nostruct-align/1r2qA.t04-thin90.a2m.gz, have 129158 columns in 532 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h5qA/nostruct-align/1h5qA.t04-thin90.a2m.gz
# 1h5qA.t04-thin90.a2m with 2367 sequences, total weight= 111.207 avg weight= 0.0469824 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32094 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h5qA/info/1h5qA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h5qA/nostruct-align/1h5qA.t04-thin90.a2m.gz, have 129418 columns in 533 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kgsA/nostruct-align/1kgsA.t04-thin90.a2m.gz
# 1kgsA.t04-thin90.a2m with 2329 sequences, total weight= 2329 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29862 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kgsA/info/1kgsA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kgsA/nostruct-align/1kgsA.t04-thin90.a2m.gz, have 129637 columns in 534 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rwiA/nostruct-align/1rwiA.t04-thin90.a2m.gz
# 1rwiA.t04-thin90.a2m with 2392 sequences, total weight= 2392 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.894719 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rwiA/info/1rwiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rwiA/nostruct-align/1rwiA.t04-thin90.a2m.gz, have 129893 columns in 535 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tyv/nostruct-align/1tyv.t04-thin90.a2m.gz
# 1tyv.t04-thin90.a2m with 4 sequences, total weight= 3.40661 avg weight= 0.851654 8 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tyv/info/1tyv.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tyv/nostruct-align/1tyv.t04-thin90.a2m.gz, have 130435 columns in 536 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tqhA/nostruct-align/1tqhA.t04-thin90.a2m.gz
# 1tqhA.t04-thin90.a2m with 2345 sequences, total weight= 2345 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.863516 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tqhA/info/1tqhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tqhA/nostruct-align/1tqhA.t04-thin90.a2m.gz, have 130677 columns in 537 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54H/nostruct-align/1v54H.t04-thin90.a2m.gz
# 1v54H.t04-thin90.a2m with 27 sequences, total weight= 6.61315 avg weight= 0.244931 25 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54H/info/1v54H.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v54H/nostruct-align/1v54H.t04-thin90.a2m.gz, have 130756 columns in 538 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u14A/nostruct-align/1u14A.t04-thin90.a2m.gz
# 1u14A.t04-thin90.a2m with 30 sequences, total weight= 13.005 avg weight= 0.4335 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u14A/info/1u14A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1u14A/nostruct-align/1u14A.t04-thin90.a2m.gz, have 130925 columns in 539 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1chd/nostruct-align/1chd.t04-thin90.a2m.gz
# 1chd.t04-thin90.a2m with 184 sequences, total weight= 28.2402 avg weight= 0.15348 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1chd/info/1chd.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1chd/nostruct-align/1chd.t04-thin90.a2m.gz, have 131123 columns in 540 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fdr/nostruct-align/1fdr.t04-thin90.a2m.gz
# 1fdr.t04-thin90.a2m with 1182 sequences, total weight= 1182 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02547 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fdr/info/1fdr.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fdr/nostruct-align/1fdr.t04-thin90.a2m.gz, have 131367 columns in 541 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a3c/nostruct-align/1a3c.t04-thin90.a2m.gz
# 1a3c.t04-thin90.a2m with 648 sequences, total weight= 648 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06536 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a3c/info/1a3c.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a3c/nostruct-align/1a3c.t04-thin90.a2m.gz, have 131533 columns in 542 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ox0A/nostruct-align/1ox0A.t04-thin90.a2m.gz
# 1ox0A.t04-thin90.a2m with 2013 sequences, total weight= 2013 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26824 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ox0A/info/1ox0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ox0A/nostruct-align/1ox0A.t04-thin90.a2m.gz, have 131947 columns in 543 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bx4A/nostruct-align/1bx4A.t04-thin90.a2m.gz
# 1bx4A.t04-thin90.a2m with 1195 sequences, total weight= 1195 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.997253 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bx4A/info/1bx4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bx4A/nostruct-align/1bx4A.t04-thin90.a2m.gz, have 132289 columns in 544 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2t/2tpsA/nostruct-align/2tpsA.t04-thin90.a2m.gz
# 2tpsA.t04-thin90.a2m with 2077 sequences, total weight= 2077 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.866402 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2t/2tpsA/info/2tpsA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2t/2tpsA/nostruct-align/2tpsA.t04-thin90.a2m.gz, have 132515 columns in 545 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dbwA/nostruct-align/1dbwA.t04-thin90.a2m.gz
# 1dbwA.t04-thin90.a2m with 2371 sequences, total weight= 126.688 avg weight= 0.0534323 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.33098 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dbwA/info/1dbwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dbwA/nostruct-align/1dbwA.t04-thin90.a2m.gz, have 132638 columns in 546 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jkxA/nostruct-align/1jkxA.t04-thin90.a2m.gz
# 1jkxA.t04-thin90.a2m with 505 sequences, total weight= 505 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.288 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jkxA/info/1jkxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jkxA/nostruct-align/1jkxA.t04-thin90.a2m.gz, have 132847 columns in 547 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ia8A/nostruct-align/1ia8A.t04-thin90.a2m.gz
# 1ia8A.t04-thin90.a2m with 1146 sequences, total weight= 52.2939 avg weight= 0.0456317 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30439 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ia8A/info/1ia8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ia8A/nostruct-align/1ia8A.t04-thin90.a2m.gz, have 133119 columns in 548 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1opd/nostruct-align/1opd.t04-thin90.a2m.gz
# 1opd.t04-thin90.a2m with 180 sequences, total weight= 22.5311 avg weight= 0.125173 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1opd/info/1opd.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1opd/nostruct-align/1opd.t04-thin90.a2m.gz, have 133204 columns in 549 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vl7A/nostruct-align/1vl7A.t04-thin90.a2m.gz
# 1vl7A.t04-thin90.a2m with 246 sequences, total weight= 246 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0323 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vl7A/info/1vl7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vl7A/nostruct-align/1vl7A.t04-thin90.a2m.gz, have 133339 columns in 550 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qkrA/nostruct-align/1qkrA.t04-thin90.a2m.gz
# 1qkrA.t04-thin90.a2m with 24 sequences, total weight= 13.6275 avg weight= 0.567814 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qkrA/info/1qkrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qkrA/nostruct-align/1qkrA.t04-thin90.a2m.gz, have 133520 columns in 551 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ui0A/nostruct-align/1ui0A.t04-thin90.a2m.gz
# 1ui0A.t04-thin90.a2m with 182 sequences, total weight= 170.595 avg weight= 0.937335 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30035 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ui0A/info/1ui0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ui0A/nostruct-align/1ui0A.t04-thin90.a2m.gz, have 133712 columns in 552 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m45A/nostruct-align/1m45A.t04-thin90.a2m.gz
# 1m45A.t04-thin90.a2m with 1294 sequences, total weight= 1294 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04466 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m45A/info/1m45A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m45A/nostruct-align/1m45A.t04-thin90.a2m.gz, have 133854 columns in 553 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mqoA/nostruct-align/1mqoA.t04-thin90.a2m.gz
# 1mqoA.t04-thin90.a2m with 2103 sequences, total weight= 2103 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.814018 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mqoA/info/1mqoA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mqoA/nostruct-align/1mqoA.t04-thin90.a2m.gz, have 134075 columns in 554 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k5nA/nostruct-align/1k5nA.t04-thin90.a2m.gz
# 1k5nA.t04-thin90.a2m with 580 sequences, total weight= 14.5884 avg weight= 0.0251525 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k5nA/info/1k5nA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k5nA/nostruct-align/1k5nA.t04-thin90.a2m.gz, have 134351 columns in 555 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nxuA/nostruct-align/1nxuA.t04-thin90.a2m.gz
# 1nxuA.t04-thin90.a2m with 88 sequences, total weight= 28.4289 avg weight= 0.323056 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nxuA/info/1nxuA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nxuA/nostruct-align/1nxuA.t04-thin90.a2m.gz, have 134683 columns in 556 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ew0A/nostruct-align/1ew0A.t04-thin90.a2m.gz
# 1ew0A.t04-thin90.a2m with 4026 sequences, total weight= 4026 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.83584 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ew0A/info/1ew0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ew0A/nostruct-align/1ew0A.t04-thin90.a2m.gz, have 134813 columns in 557 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lf7A/nostruct-align/1lf7A.t04-thin90.a2m.gz
# 1lf7A.t04-thin90.a2m with 301 sequences, total weight= 301 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.917974 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lf7A/info/1lf7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lf7A/nostruct-align/1lf7A.t04-thin90.a2m.gz, have 134977 columns in 558 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e30A/nostruct-align/1e30A.t04-thin90.a2m.gz
# 1e30A.t04-thin90.a2m with 256 sequences, total weight= 256 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01681 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e30A/info/1e30A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e30A/nostruct-align/1e30A.t04-thin90.a2m.gz, have 135130 columns in 559 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rttA/nostruct-align/1rttA.t04-thin90.a2m.gz
# 1rttA.t04-thin90.a2m with 904 sequences, total weight= 904 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.948233 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rttA/info/1rttA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rttA/nostruct-align/1rttA.t04-thin90.a2m.gz, have 135304 columns in 560 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cnv/nostruct-align/1cnv.t04-thin90.a2m.gz
# 1cnv.t04-thin90.a2m with 675 sequences, total weight= 675 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04248 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cnv/info/1cnv.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cnv/nostruct-align/1cnv.t04-thin90.a2m.gz, have 135587 columns in 561 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tovA/nostruct-align/1tovA.t04-thin90.a2m.gz
# 1tovA.t04-thin90.a2m with 174 sequences, total weight= 59.9644 avg weight= 0.344623 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30135 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tovA/info/1tovA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tovA/nostruct-align/1tovA.t04-thin90.a2m.gz, have 135684 columns in 562 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dqeA/nostruct-align/1dqeA.t04-thin90.a2m.gz
# 1dqeA.t04-thin90.a2m with 77 sequences, total weight= 77 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28795 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dqeA/info/1dqeA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dqeA/nostruct-align/1dqeA.t04-thin90.a2m.gz, have 135821 columns in 563 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s7iA/nostruct-align/1s7iA.t04-thin90.a2m.gz
# 1s7iA.t04-thin90.a2m with 69 sequences, total weight= 34.3676 avg weight= 0.498081 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s7iA/info/1s7iA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s7iA/nostruct-align/1s7iA.t04-thin90.a2m.gz, have 135945 columns in 564 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dypA/nostruct-align/1dypA.t04-thin90.a2m.gz
# 1dypA.t04-thin90.a2m with 351 sequences, total weight= 351 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04314 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dypA/info/1dypA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dypA/nostruct-align/1dypA.t04-thin90.a2m.gz, have 136216 columns in 565 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fcyA/nostruct-align/1fcyA.t04-thin90.a2m.gz
# 1fcyA.t04-thin90.a2m with 960 sequences, total weight= 960 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.847299 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fcyA/info/1fcyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fcyA/nostruct-align/1fcyA.t04-thin90.a2m.gz, have 136452 columns in 566 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t5bA/nostruct-align/1t5bA.t04-thin90.a2m.gz
# 1t5bA.t04-thin90.a2m with 842 sequences, total weight= 842 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.972111 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t5bA/info/1t5bA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t5bA/nostruct-align/1t5bA.t04-thin90.a2m.gz, have 136651 columns in 567 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ej0A/nostruct-align/1ej0A.t04-thin90.a2m.gz
# 1ej0A.t04-thin90.a2m with 1002 sequences, total weight= 1002 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.986687 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ej0A/info/1ej0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ej0A/nostruct-align/1ej0A.t04-thin90.a2m.gz, have 136831 columns in 568 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ifrA/nostruct-align/1ifrA.t04-thin90.a2m.gz
# 1ifrA.t04-thin90.a2m with 77 sequences, total weight= 29.4555 avg weight= 0.382538 43 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ifrA/info/1ifrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ifrA/nostruct-align/1ifrA.t04-thin90.a2m.gz, have 136944 columns in 569 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u55A/nostruct-align/1u55A.t04-thin90.a2m.gz
# 1u55A.t04-thin90.a2m with 62 sequences, total weight= 62 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25972 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u55A/info/1u55A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1u55A/nostruct-align/1u55A.t04-thin90.a2m.gz, have 137132 columns in 570 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gheA/nostruct-align/1gheA.t04-thin90.a2m.gz
# 1gheA.t04-thin90.a2m with 2392 sequences, total weight= 2392 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.773968 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gheA/info/1gheA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gheA/nostruct-align/1gheA.t04-thin90.a2m.gz, have 137302 columns in 571 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kq6A/nostruct-align/1kq6A.t04-thin90.a2m.gz
# 1kq6A.t04-thin90.a2m with 164 sequences, total weight= 164 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08916 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kq6A/info/1kq6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kq6A/nostruct-align/1kq6A.t04-thin90.a2m.gz, have 137442 columns in 572 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r6xA/nostruct-align/1r6xA.t04-thin90.a2m.gz
# 1r6xA.t04-thin90.a2m with 95 sequences, total weight= 19.9826 avg weight= 0.210343 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r6xA/info/1r6xA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r6xA/nostruct-align/1r6xA.t04-thin90.a2m.gz, have 137828 columns in 573 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l6rA/nostruct-align/1l6rA.t04-thin90.a2m.gz
# 1l6rA.t04-thin90.a2m with 2052 sequences, total weight= 2052 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.975022 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l6rA/info/1l6rA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l6rA/nostruct-align/1l6rA.t04-thin90.a2m.gz, have 138053 columns in 574 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qtnA/nostruct-align/1qtnA.t04-thin90.a2m.gz
# 1qtnA.t04-thin90.a2m with 104 sequences, total weight= 36.1491 avg weight= 0.347588 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qtnA/info/1qtnA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qtnA/nostruct-align/1qtnA.t04-thin90.a2m.gz, have 138205 columns in 575 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3s/3sdhA/nostruct-align/3sdhA.t04-thin90.a2m.gz
# 3sdhA.t04-thin90.a2m with 747 sequences, total weight= 747 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19507 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3s/3sdhA/info/3sdhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/3s/3sdhA/nostruct-align/3sdhA.t04-thin90.a2m.gz, have 138350 columns in 576 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e1hA/nostruct-align/1e1hA.t04-thin90.a2m.gz
# 1e1hA.t04-thin90.a2m with 18 sequences, total weight= 7.57723 avg weight= 0.420957 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e1hA/info/1e1hA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e1hA/nostruct-align/1e1hA.t04-thin90.a2m.gz, have 138585 columns in 577 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nepA/nostruct-align/1nepA.t04-thin90.a2m.gz
# 1nepA.t04-thin90.a2m with 60 sequences, total weight= 60 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26609 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nepA/info/1nepA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nepA/nostruct-align/1nepA.t04-thin90.a2m.gz, have 138715 columns in 578 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s2wA/nostruct-align/1s2wA.t04-thin90.a2m.gz
# 1s2wA.t04-thin90.a2m with 368 sequences, total weight= 196.778 avg weight= 0.534724 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30523 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s2wA/info/1s2wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s2wA/nostruct-align/1s2wA.t04-thin90.a2m.gz, have 138973 columns in 579 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u60A/nostruct-align/1u60A.t04-thin90.a2m.gz
# 1u60A.t04-thin90.a2m with 94 sequences, total weight= 22.4168 avg weight= 0.238476 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u60A/info/1u60A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1u60A/nostruct-align/1u60A.t04-thin90.a2m.gz, have 139282 columns in 580 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jg1A/nostruct-align/1jg1A.t04-thin90.a2m.gz
# 1jg1A.t04-thin90.a2m with 2314 sequences, total weight= 2314 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.78876 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jg1A/info/1jg1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jg1A/nostruct-align/1jg1A.t04-thin90.a2m.gz, have 139497 columns in 581 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f3uB/nostruct-align/1f3uB.t04-thin90.a2m.gz
# 1f3uB.t04-thin90.a2m with 8 sequences, total weight= 4.72303 avg weight= 0.590379 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f3uB/info/1f3uB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f3uB/nostruct-align/1f3uB.t04-thin90.a2m.gz, have 139636 columns in 582 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mxiA/nostruct-align/1mxiA.t04-thin90.a2m.gz
# 1mxiA.t04-thin90.a2m with 584 sequences, total weight= 584 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27087 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mxiA/info/1mxiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mxiA/nostruct-align/1mxiA.t04-thin90.a2m.gz, have 139792 columns in 583 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tbfA/nostruct-align/1tbfA.t04-thin90.a2m.gz
# 1tbfA.t04-thin90.a2m with 177 sequences, total weight= 60.8649 avg weight= 0.34387 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30043 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tbfA/info/1tbfA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tbfA/nostruct-align/1tbfA.t04-thin90.a2m.gz, have 140118 columns in 584 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rh6A/nostruct-align/1rh6A.t04-thin90.a2m.gz
# 1rh6A.t04-thin90.a2m with 5 sequences, total weight= 4.48537 avg weight= 0.897074 14 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rh6A/info/1rh6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rh6A/nostruct-align/1rh6A.t04-thin90.a2m.gz, have 140173 columns in 585 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oboA/nostruct-align/1oboA.t04-thin90.a2m.gz
# 1oboA.t04-thin90.a2m with 692 sequences, total weight= 692 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00477 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oboA/info/1oboA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oboA/nostruct-align/1oboA.t04-thin90.a2m.gz, have 140342 columns in 586 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jfxA/nostruct-align/1jfxA.t04-thin90.a2m.gz
# 1jfxA.t04-thin90.a2m with 133 sequences, total weight= 133 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20338 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jfxA/info/1jfxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jfxA/nostruct-align/1jfxA.t04-thin90.a2m.gz, have 140559 columns in 587 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f86A/nostruct-align/1f86A.t04-thin90.a2m.gz
# 1f86A.t04-thin90.a2m with 67 sequences, total weight= 11.9831 avg weight= 0.178852 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f86A/info/1f86A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f86A/nostruct-align/1f86A.t04-thin90.a2m.gz, have 140674 columns in 588 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m4iA/nostruct-align/1m4iA.t04-thin90.a2m.gz
# 1m4iA.t04-thin90.a2m with 2432 sequences, total weight= 2432 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.836973 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m4iA/info/1m4iA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m4iA/nostruct-align/1m4iA.t04-thin90.a2m.gz, have 140855 columns in 589 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qwnA/nostruct-align/1qwnA.t04-thin90.a2m.gz
# 1qwnA.t04-thin90.a2m with 149 sequences, total weight= 149 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09448 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qwnA/info/1qwnA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qwnA/nostruct-align/1qwnA.t04-thin90.a2m.gz, have 141869 columns in 590 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iuqA/nostruct-align/1iuqA.t04-thin90.a2m.gz
# 1iuqA.t04-thin90.a2m with 508 sequences, total weight= 508 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.954337 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iuqA/info/1iuqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iuqA/nostruct-align/1iuqA.t04-thin90.a2m.gz, have 142226 columns in 591 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v2zA/nostruct-align/1v2zA.t04-thin90.a2m.gz
# 1v2zA.t04-thin90.a2m with 11 sequences, total weight= 3.60899 avg weight= 0.32809 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v2zA/info/1v2zA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v2zA/nostruct-align/1v2zA.t04-thin90.a2m.gz, have 142332 columns in 592 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nqzA/nostruct-align/1nqzA.t04-thin90.a2m.gz
# 1nqzA.t04-thin90.a2m with 1559 sequences, total weight= 1559 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.791813 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nqzA/info/1nqzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nqzA/nostruct-align/1nqzA.t04-thin90.a2m.gz, have 142503 columns in 593 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kafA/nostruct-align/1kafA.t04-thin90.a2m.gz
# 1kafA.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.964603 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kafA/info/1kafA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kafA/nostruct-align/1kafA.t04-thin90.a2m.gz, have 142611 columns in 594 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2e/2eng/nostruct-align/2eng.t04-thin90.a2m.gz
# 2eng.t04-thin90.a2m with 22 sequences, total weight= 5.24969 avg weight= 0.238622 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2e/2eng/info/2eng.stride-mixed.near-backbone-11
WARNING: skipping f, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/2e/2eng/nostruct-align/2eng.t04-thin90.a2m.gz, have 142816 columns in 595 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ogoX/nostruct-align/1ogoX.t04-thin90.a2m.gz
# 1ogoX.t04-thin90.a2m with 5 sequences, total weight= 3.71963 avg weight= 0.743926 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ogoX/info/1ogoX.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ogoX/nostruct-align/1ogoX.t04-thin90.a2m.gz, have 143388 columns in 596 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o9wA/nostruct-align/1o9wA.t04-thin90.a2m.gz
# 1o9wA.t04-thin90.a2m with 2 sequences, total weight= 1.88352 avg weight= 0.94176 6 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o9wA/info/1o9wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o9wA/nostruct-align/1o9wA.t04-thin90.a2m.gz, have 143557 columns in 597 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1ku3A/nostruct-align/1ku3A.t04-thin90.a2m.gz
# 1ku3A.t04-thin90.a2m with 200 sequences, total weight= 11.802 avg weight= 0.0590102 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1ku3A/info/1ku3A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1ku3A/nostruct-align/1ku3A.t04-thin90.a2m.gz, have 143618 columns in 598 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q0rA/nostruct-align/1q0rA.t04-thin90.a2m.gz
# 1q0rA.t04-thin90.a2m with 2367 sequences, total weight= 2367 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.762128 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q0rA/info/1q0rA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q0rA/nostruct-align/1q0rA.t04-thin90.a2m.gz, have 143915 columns in 599 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fr2A/nostruct-align/1fr2A.t04-thin90.a2m.gz
# 1fr2A.t04-thin90.a2m with 18 sequences, total weight= 4.76567 avg weight= 0.26476 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fr2A/info/1fr2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fr2A/nostruct-align/1fr2A.t04-thin90.a2m.gz, have 143998 columns in 600 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m70A/nostruct-align/1m70A.t04-thin90.a2m.gz
# 1m70A.t04-thin90.a2m with 834 sequences, total weight= 834 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.971826 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m70A/info/1m70A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m70A/nostruct-align/1m70A.t04-thin90.a2m.gz, have 144188 columns in 601 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qg8A/nostruct-align/1qg8A.t04-thin90.a2m.gz
# 1qg8A.t04-thin90.a2m with 2343 sequences, total weight= 2343 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.877543 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qg8A/info/1qg8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qg8A/nostruct-align/1qg8A.t04-thin90.a2m.gz, have 144426 columns in 602 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gveA/nostruct-align/1gveA.t04-thin90.a2m.gz
# 1gveA.t04-thin90.a2m with 1250 sequences, total weight= 1250 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24029 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gveA/info/1gveA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gveA/nostruct-align/1gveA.t04-thin90.a2m.gz, have 144750 columns in 603 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lm5A/nostruct-align/1lm5A.t04-thin90.a2m.gz
# 1lm5A.t04-thin90.a2m with 93 sequences, total weight= 93 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16546 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lm5A/info/1lm5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lm5A/nostruct-align/1lm5A.t04-thin90.a2m.gz, have 144939 columns in 604 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p90A/nostruct-align/1p90A.t04-thin90.a2m.gz
# 1p90A.t04-thin90.a2m with 158 sequences, total weight= 158 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1653 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p90A/info/1p90A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p90A/nostruct-align/1p90A.t04-thin90.a2m.gz, have 145062 columns in 605 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lq9A/nostruct-align/1lq9A.t04-thin90.a2m.gz
# 1lq9A.t04-thin90.a2m with 45 sequences, total weight= 45 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15143 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lq9A/info/1lq9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lq9A/nostruct-align/1lq9A.t04-thin90.a2m.gz, have 145174 columns in 606 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uuyA/nostruct-align/1uuyA.t04-thin90.a2m.gz
# 1uuyA.t04-thin90.a2m with 490 sequences, total weight= 490 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25109 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uuyA/info/1uuyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uuyA/nostruct-align/1uuyA.t04-thin90.a2m.gz, have 145335 columns in 607 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1z/1zin/nostruct-align/1zin.t04-thin90.a2m.gz
# 1zin.t04-thin90.a2m with 1938 sequences, total weight= 1938 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.853582 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1z/1zin/info/1zin.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1z/1zin/nostruct-align/1zin.t04-thin90.a2m.gz, have 145552 columns in 608 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pz7A/nostruct-align/1pz7A.t04-thin90.a2m.gz
# 1pz7A.t04-thin90.a2m with 616 sequences, total weight= 616 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.894127 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pz7A/info/1pz7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pz7A/nostruct-align/1pz7A.t04-thin90.a2m.gz, have 145740 columns in 609 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l5oA/nostruct-align/1l5oA.t04-thin90.a2m.gz
# 1l5oA.t04-thin90.a2m with 108 sequences, total weight= 39.7763 avg weight= 0.368299 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l5oA/info/1l5oA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l5oA/nostruct-align/1l5oA.t04-thin90.a2m.gz, have 146086 columns in 610 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d4aA/nostruct-align/1d4aA.t04-thin90.a2m.gz
# 1d4aA.t04-thin90.a2m with 755 sequences, total weight= 755 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07429 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d4aA/info/1d4aA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d4aA/nostruct-align/1d4aA.t04-thin90.a2m.gz, have 146359 columns in 611 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s3eA/nostruct-align/1s3eA.t04-thin90.a2m.gz
# 1s3eA.t04-thin90.a2m with 2104 sequences, total weight= 2104 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.926129 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s3eA/info/1s3eA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s3eA/nostruct-align/1s3eA.t04-thin90.a2m.gz, have 146858 columns in 612 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jhfA/nostruct-align/1jhfA.t04-thin90.a2m.gz
# 1jhfA.t04-thin90.a2m with 335 sequences, total weight= 335 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04928 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jhfA/info/1jhfA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jhfA/nostruct-align/1jhfA.t04-thin90.a2m.gz, have 147055 columns in 613 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rgzA/nostruct-align/1rgzA.t04-thin90.a2m.gz
# 1rgzA.t04-thin90.a2m with 572 sequences, total weight= 572 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.994278 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rgzA/info/1rgzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rgzA/nostruct-align/1rgzA.t04-thin90.a2m.gz, have 147418 columns in 614 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mla/nostruct-align/1mla.t04-thin90.a2m.gz
# 1mla.t04-thin90.a2m with 1033 sequences, total weight= 1033 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24846 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mla/info/1mla.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mla/nostruct-align/1mla.t04-thin90.a2m.gz, have 147723 columns in 615 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f9vA/nostruct-align/1f9vA.t04-thin90.a2m.gz
# 1f9vA.t04-thin90.a2m with 494 sequences, total weight= 50.5816 avg weight= 0.102392 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30122 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f9vA/info/1f9vA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f9vA/nostruct-align/1f9vA.t04-thin90.a2m.gz, have 148036 columns in 616 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n8kA/nostruct-align/1n8kA.t04-thin90.a2m.gz
# 1n8kA.t04-thin90.a2m with 1912 sequences, total weight= 1912 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25806 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n8kA/info/1n8kA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n8kA/nostruct-align/1n8kA.t04-thin90.a2m.gz, have 148410 columns in 617 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jx4A/nostruct-align/1jx4A.t04-thin90.a2m.gz
# 1jx4A.t04-thin90.a2m with 303 sequences, total weight= 303 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29522 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jx4A/info/1jx4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jx4A/nostruct-align/1jx4A.t04-thin90.a2m.gz, have 148751 columns in 618 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n97A/nostruct-align/1n97A.t04-thin90.a2m.gz
# 1n97A.t04-thin90.a2m with 1813 sequences, total weight= 1813 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18967 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n97A/info/1n97A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n97A/nostruct-align/1n97A.t04-thin90.a2m.gz, have 149136 columns in 619 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k92A/nostruct-align/1k92A.t04-thin90.a2m.gz
# 1k92A.t04-thin90.a2m with 1104 sequences, total weight= 1104 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1029 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k92A/info/1k92A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k92A/nostruct-align/1k92A.t04-thin90.a2m.gz, have 149580 columns in 620 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pkhA/nostruct-align/1pkhA.t04-thin90.a2m.gz
# 1pkhA.t04-thin90.a2m with 396 sequences, total weight= 396 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19731 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pkhA/info/1pkhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pkhA/nostruct-align/1pkhA.t04-thin90.a2m.gz, have 149762 columns in 621 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q3oA/nostruct-align/1q3oA.t04-thin90.a2m.gz
# 1q3oA.t04-thin90.a2m with 744 sequences, total weight= 744 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13657 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q3oA/info/1q3oA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q3oA/nostruct-align/1q3oA.t04-thin90.a2m.gz, have 149866 columns in 622 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kqrA/nostruct-align/1kqrA.t04-thin90.a2m.gz
# 1kqrA.t04-thin90.a2m with 43 sequences, total weight= 6.77192 avg weight= 0.157486 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kqrA/info/1kqrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kqrA/nostruct-align/1kqrA.t04-thin90.a2m.gz, have 150026 columns in 623 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1euvA/nostruct-align/1euvA.t04-thin90.a2m.gz
# 1euvA.t04-thin90.a2m with 348 sequences, total weight= 348 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.911685 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1euvA/info/1euvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1euvA/nostruct-align/1euvA.t04-thin90.a2m.gz, have 150247 columns in 624 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d3gA/nostruct-align/1d3gA.t04-thin90.a2m.gz
# 1d3gA.t04-thin90.a2m with 1859 sequences, total weight= 1859 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.947624 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d3gA/info/1d3gA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d3gA/nostruct-align/1d3gA.t04-thin90.a2m.gz, have 150607 columns in 625 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uufA/nostruct-align/1uufA.t04-thin90.a2m.gz
# 1uufA.t04-thin90.a2m with 1945 sequences, total weight= 1945 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27767 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uufA/info/1uufA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uufA/nostruct-align/1uufA.t04-thin90.a2m.gz, have 150946 columns in 626 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1it2A/nostruct-align/1it2A.t04-thin90.a2m.gz
# 1it2A.t04-thin90.a2m with 736 sequences, total weight= 736 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23256 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1it2A/info/1it2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1it2A/nostruct-align/1it2A.t04-thin90.a2m.gz, have 151092 columns in 627 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qb7A/nostruct-align/1qb7A.t04-thin90.a2m.gz
# 1qb7A.t04-thin90.a2m with 1474 sequences, total weight= 1474 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.977115 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qb7A/info/1qb7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qb7A/nostruct-align/1qb7A.t04-thin90.a2m.gz, have 151328 columns in 628 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nn5A/nostruct-align/1nn5A.t04-thin90.a2m.gz
# 1nn5A.t04-thin90.a2m with 2219 sequences, total weight= 2219 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2373 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nn5A/info/1nn5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nn5A/nostruct-align/1nn5A.t04-thin90.a2m.gz, have 151532 columns in 629 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ucrA/nostruct-align/1ucrA.t04-thin90.a2m.gz
# 1ucrA.t04-thin90.a2m with 11 sequences, total weight= 5.67841 avg weight= 0.516219 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ucrA/info/1ucrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ucrA/nostruct-align/1ucrA.t04-thin90.a2m.gz, have 151606 columns in 630 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s95A/nostruct-align/1s95A.t04-thin90.a2m.gz
# 1s95A.t04-thin90.a2m with 770 sequences, total weight= 770 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05906 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s95A/info/1s95A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s95A/nostruct-align/1s95A.t04-thin90.a2m.gz, have 151930 columns in 631 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jykA/nostruct-align/1jykA.t04-thin90.a2m.gz
# 1jykA.t04-thin90.a2m with 1636 sequences, total weight= 1636 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00899 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jykA/info/1jykA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jykA/nostruct-align/1jykA.t04-thin90.a2m.gz, have 152159 columns in 632 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qazA/nostruct-align/1qazA.t04-thin90.a2m.gz
# 1qazA.t04-thin90.a2m with 31 sequences, total weight= 31 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11446 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qazA/info/1qazA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qazA/nostruct-align/1qazA.t04-thin90.a2m.gz, have 152510 columns in 633 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pkoA/nostruct-align/1pkoA.t04-thin90.a2m.gz
# 1pkoA.t04-thin90.a2m with 1138 sequences, total weight= 24.5524 avg weight= 0.021575 45 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pkoA/info/1pkoA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pkoA/nostruct-align/1pkoA.t04-thin90.a2m.gz, have 152634 columns in 634 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n9eA/nostruct-align/1n9eA.t04-thin90.a2m.gz
# 1n9eA.t04-thin90.a2m with 102 sequences, total weight= 70.5683 avg weight= 0.691846 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n9eA/info/1n9eA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n9eA/nostruct-align/1n9eA.t04-thin90.a2m.gz, have 153369 columns in 635 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l8bA/nostruct-align/1l8bA.t04-thin90.a2m.gz
# 1l8bA.t04-thin90.a2m with 86 sequences, total weight= 43.6085 avg weight= 0.507076 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l8bA/info/1l8bA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l8bA/nostruct-align/1l8bA.t04-thin90.a2m.gz, have 153546 columns in 636 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1go3F/nostruct-align/1go3F.t04-thin90.a2m.gz
# 1go3F.t04-thin90.a2m with 21 sequences, total weight= 17.1443 avg weight= 0.816396 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1go3F/info/1go3F.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1go3F/nostruct-align/1go3F.t04-thin90.a2m.gz, have 153653 columns in 637 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rcqA/nostruct-align/1rcqA.t04-thin90.a2m.gz
# 1rcqA.t04-thin90.a2m with 783 sequences, total weight= 783 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08471 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rcqA/info/1rcqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rcqA/nostruct-align/1rcqA.t04-thin90.a2m.gz, have 154010 columns in 638 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vkeA/nostruct-align/1vkeA.t04-thin90.a2m.gz
# 1vkeA.t04-thin90.a2m with 311 sequences, total weight= 311 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26489 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vkeA/info/1vkeA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vkeA/nostruct-align/1vkeA.t04-thin90.a2m.gz, have 154127 columns in 639 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kp6A/nostruct-align/1kp6A.t04-thin90.a2m.gz
# 1kp6A.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.617161 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kp6A/info/1kp6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kp6A/nostruct-align/1kp6A.t04-thin90.a2m.gz, have 154206 columns in 640 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e5kA/nostruct-align/1e5kA.t04-thin90.a2m.gz
# 1e5kA.t04-thin90.a2m with 1677 sequences, total weight= 1677 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.995197 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e5kA/info/1e5kA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e5kA/nostruct-align/1e5kA.t04-thin90.a2m.gz, have 154394 columns in 641 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kveA/nostruct-align/1kveA.t04-thin90.a2m.gz
# 1kveA.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.697962 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kveA/info/1kveA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kveA/nostruct-align/1kveA.t04-thin90.a2m.gz, have 154457 columns in 642 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eajA/nostruct-align/1eajA.t04-thin90.a2m.gz
# 1eajA.t04-thin90.a2m with 1026 sequences, total weight= 15.4064 avg weight= 0.015016 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eajA/info/1eajA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eajA/nostruct-align/1eajA.t04-thin90.a2m.gz, have 154581 columns in 643 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pgs/nostruct-align/1pgs.t04-thin90.a2m.gz
# 1pgs.t04-thin90.a2m with 3 sequences, total weight= 3 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03867 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pgs/info/1pgs.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pgs/nostruct-align/1pgs.t04-thin90.a2m.gz, have 154892 columns in 644 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pe9A/nostruct-align/1pe9A.t04-thin90.a2m.gz
# 1pe9A.t04-thin90.a2m with 175 sequences, total weight= 147.883 avg weight= 0.845048 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30039 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pe9A/info/1pe9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pe9A/nostruct-align/1pe9A.t04-thin90.a2m.gz, have 155253 columns in 645 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2a/2ayh/nostruct-align/2ayh.t04-thin90.a2m.gz
# 2ayh.t04-thin90.a2m with 381 sequences, total weight= 381 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10455 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2a/2ayh/info/2ayh.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2a/2ayh/nostruct-align/2ayh.t04-thin90.a2m.gz, have 155467 columns in 646 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qqqA/nostruct-align/1qqqA.t04-thin90.a2m.gz
# 1qqqA.t04-thin90.a2m with 192 sequences, total weight= 34.7386 avg weight= 0.18093 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qqqA/info/1qqqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qqqA/nostruct-align/1qqqA.t04-thin90.a2m.gz, have 155731 columns in 647 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ucdA/nostruct-align/1ucdA.t04-thin90.a2m.gz
# 1ucdA.t04-thin90.a2m with 454 sequences, total weight= 112.92 avg weight= 0.248722 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30467 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ucdA/info/1ucdA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ucdA/nostruct-align/1ucdA.t04-thin90.a2m.gz, have 155921 columns in 648 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uxy/nostruct-align/1uxy.t04-thin90.a2m.gz
# 1uxy.t04-thin90.a2m with 953 sequences, total weight= 953 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.998088 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uxy/info/1uxy.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uxy/nostruct-align/1uxy.t04-thin90.a2m.gz, have 156261 columns in 649 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1avwB/nostruct-align/1avwB.t04-thin90.a2m.gz
# 1avwB.t04-thin90.a2m with 104 sequences, total weight= 42.7012 avg weight= 0.410588 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1avwB/info/1avwB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1avwB/nostruct-align/1avwB.t04-thin90.a2m.gz, have 156432 columns in 650 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k07A/nostruct-align/1k07A.t04-thin90.a2m.gz
# 1k07A.t04-thin90.a2m with 2125 sequences, total weight= 2125 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.765608 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k07A/info/1k07A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k07A/nostruct-align/1k07A.t04-thin90.a2m.gz, have 156694 columns in 651 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q52A/nostruct-align/1q52A.t04-thin90.a2m.gz
# 1q52A.t04-thin90.a2m with 1425 sequences, total weight= 1425 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1089 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q52A/info/1q52A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q52A/nostruct-align/1q52A.t04-thin90.a2m.gz, have 156963 columns in 652 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fxoA/nostruct-align/1fxoA.t04-thin90.a2m.gz
# 1fxoA.t04-thin90.a2m with 1623 sequences, total weight= 1623 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00798 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fxoA/info/1fxoA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fxoA/nostruct-align/1fxoA.t04-thin90.a2m.gz, have 157255 columns in 653 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1od3A/nostruct-align/1od3A.t04-thin90.a2m.gz
# 1od3A.t04-thin90.a2m with 119 sequences, total weight= 90.0074 avg weight= 0.756364 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30037 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1od3A/info/1od3A.stride-mixed.near-backbone-11
WARNING: skipping e, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1o/1od3A/nostruct-align/1od3A.t04-thin90.a2m.gz, have 157386 columns in 654 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qwyA/nostruct-align/1qwyA.t04-thin90.a2m.gz
# 1qwyA.t04-thin90.a2m with 790 sequences, total weight= 790 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.987551 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qwyA/info/1qwyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qwyA/nostruct-align/1qwyA.t04-thin90.a2m.gz, have 157620 columns in 655 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jigA/nostruct-align/1jigA.t04-thin90.a2m.gz
# 1jigA.t04-thin90.a2m with 247 sequences, total weight= 247 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25343 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jigA/info/1jigA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jigA/nostruct-align/1jigA.t04-thin90.a2m.gz, have 157766 columns in 656 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iibA/nostruct-align/1iibA.t04-thin90.a2m.gz
# 1iibA.t04-thin90.a2m with 75 sequences, total weight= 20.754 avg weight= 0.27672 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iibA/info/1iibA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iibA/nostruct-align/1iibA.t04-thin90.a2m.gz, have 157869 columns in 657 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dcs/nostruct-align/1dcs.t04-thin90.a2m.gz
# 1dcs.t04-thin90.a2m with 553 sequences, total weight= 475.336 avg weight= 0.859559 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30258 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dcs/info/1dcs.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dcs/nostruct-align/1dcs.t04-thin90.a2m.gz, have 158148 columns in 658 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mnaA/nostruct-align/1mnaA.t04-thin90.a2m.gz
# 1mnaA.t04-thin90.a2m with 2380 sequences, total weight= 2380 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.885447 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mnaA/info/1mnaA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mnaA/nostruct-align/1mnaA.t04-thin90.a2m.gz, have 158424 columns in 659 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1suuA/nostruct-align/1suuA.t04-thin90.a2m.gz
# 1suuA.t04-thin90.a2m with 258 sequences, total weight= 88.8651 avg weight= 0.344438 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30163 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1suuA/info/1suuA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1suuA/nostruct-align/1suuA.t04-thin90.a2m.gz, have 158717 columns in 660 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sfdA/nostruct-align/1sfdA.t04-thin90.a2m.gz
# 1sfdA.t04-thin90.a2m with 433 sequences, total weight= 433 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0409 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sfdA/info/1sfdA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sfdA/nostruct-align/1sfdA.t04-thin90.a2m.gz, have 158822 columns in 661 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i0vA/nostruct-align/1i0vA.t04-thin90.a2m.gz
# 1i0vA.t04-thin90.a2m with 24 sequences, total weight= 8.36806 avg weight= 0.348669 25 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i0vA/info/1i0vA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i0vA/nostruct-align/1i0vA.t04-thin90.a2m.gz, have 158926 columns in 662 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3b/3bamA/nostruct-align/3bamA.t04-thin90.a2m.gz
# 3bamA.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.92117 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3b/3bamA/info/3bamA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/3b/3bamA/nostruct-align/3bamA.t04-thin90.a2m.gz, have 159132 columns in 663 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iq4A/nostruct-align/1iq4A.t04-thin90.a2m.gz
# 1iq4A.t04-thin90.a2m with 241 sequences, total weight= 36.8987 avg weight= 0.153107 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iq4A/info/1iq4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iq4A/nostruct-align/1iq4A.t04-thin90.a2m.gz, have 159311 columns in 664 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o9rA/nostruct-align/1o9rA.t04-thin90.a2m.gz
# 1o9rA.t04-thin90.a2m with 257 sequences, total weight= 257 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18633 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o9rA/info/1o9rA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o9rA/nostruct-align/1o9rA.t04-thin90.a2m.gz, have 159473 columns in 665 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gyxA/nostruct-align/1gyxA.t04-thin90.a2m.gz
# 1gyxA.t04-thin90.a2m with 4 sequences, total weight= 4 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23741 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gyxA/info/1gyxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gyxA/nostruct-align/1gyxA.t04-thin90.a2m.gz, have 159549 columns in 666 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vk1A/nostruct-align/1vk1A.t04-thin90.a2m.gz
# 1vk1A.t04-thin90.a2m with 412 sequences, total weight= 412 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1321 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vk1A/info/1vk1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vk1A/nostruct-align/1vk1A.t04-thin90.a2m.gz, have 159781 columns in 667 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t1dA/nostruct-align/1t1dA.t04-thin90.a2m.gz
# 1t1dA.t04-thin90.a2m with 194 sequences, total weight= 51.6183 avg weight= 0.266074 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30148 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t1dA/info/1t1dA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t1dA/nostruct-align/1t1dA.t04-thin90.a2m.gz, have 159881 columns in 668 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2t/2trxA/nostruct-align/2trxA.t04-thin90.a2m.gz
# 2trxA.t04-thin90.a2m with 2018 sequences, total weight= 2018 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.966911 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2t/2trxA/info/2trxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2t/2trxA/nostruct-align/2trxA.t04-thin90.a2m.gz, have 159989 columns in 669 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s1dA/nostruct-align/1s1dA.t04-thin90.a2m.gz
# 1s1dA.t04-thin90.a2m with 18 sequences, total weight= 6.19174 avg weight= 0.343986 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s1dA/info/1s1dA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s1dA/nostruct-align/1s1dA.t04-thin90.a2m.gz, have 160306 columns in 670 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gca/nostruct-align/1gca.t04-thin90.a2m.gz
# 1gca.t04-thin90.a2m with 1326 sequences, total weight= 1326 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.971843 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gca/info/1gca.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gca/nostruct-align/1gca.t04-thin90.a2m.gz, have 160615 columns in 671 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d3vA/nostruct-align/1d3vA.t04-thin90.a2m.gz
# 1d3vA.t04-thin90.a2m with 245 sequences, total weight= 245 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25998 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d3vA/info/1d3vA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d3vA/nostruct-align/1d3vA.t04-thin90.a2m.gz, have 160923 columns in 672 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eyhA/nostruct-align/1eyhA.t04-thin90.a2m.gz
# 1eyhA.t04-thin90.a2m with 59 sequences, total weight= 21.5515 avg weight= 0.36528 37 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eyhA/info/1eyhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eyhA/nostruct-align/1eyhA.t04-thin90.a2m.gz, have 161067 columns in 673 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1aqzA/nostruct-align/1aqzA.t04-thin90.a2m.gz
# 1aqzA.t04-thin90.a2m with 3 sequences, total weight= 1.85637 avg weight= 0.618791 7 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1aqzA/info/1aqzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1aqzA/nostruct-align/1aqzA.t04-thin90.a2m.gz, have 161209 columns in 674 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vlaA/nostruct-align/1vlaA.t04-thin90.a2m.gz
# 1vlaA.t04-thin90.a2m with 291 sequences, total weight= 291 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16968 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vlaA/info/1vlaA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vlaA/nostruct-align/1vlaA.t04-thin90.a2m.gz, have 161353 columns in 675 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vclA/nostruct-align/1vclA.t04-thin90.a2m.gz
# 1vclA.t04-thin90.a2m with 252 sequences, total weight= 25.1359 avg weight= 0.0997458 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vclA/info/1vclA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vclA/nostruct-align/1vclA.t04-thin90.a2m.gz, have 161785 columns in 676 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mfmA/nostruct-align/1mfmA.t04-thin90.a2m.gz
# 1mfmA.t04-thin90.a2m with 321 sequences, total weight= 47.6149 avg weight= 0.148333 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mfmA/info/1mfmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mfmA/nostruct-align/1mfmA.t04-thin90.a2m.gz, have 161938 columns in 677 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1whi/nostruct-align/1whi.t04-thin90.a2m.gz
# 1whi.t04-thin90.a2m with 213 sequences, total weight= 17.1383 avg weight= 0.0804614 37 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1whi/info/1whi.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1whi/nostruct-align/1whi.t04-thin90.a2m.gz, have 162060 columns in 678 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1ks9A/nostruct-align/1ks9A.t04-thin90.a2m.gz
# 1ks9A.t04-thin90.a2m with 2104 sequences, total weight= 2104 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.868252 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1ks9A/info/1ks9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1ks9A/nostruct-align/1ks9A.t04-thin90.a2m.gz, have 162351 columns in 679 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vns/nostruct-align/1vns.t04-thin90.a2m.gz
# 1vns.t04-thin90.a2m with 21 sequences, total weight= 21 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17149 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vns/info/1vns.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vns/nostruct-align/1vns.t04-thin90.a2m.gz, have 162925 columns in 680 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1ayl/nostruct-align/1ayl.t04-thin90.a2m.gz
# 1ayl.t04-thin90.a2m with 164 sequences, total weight= 36.4248 avg weight= 0.222102 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1ayl/info/1ayl.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1ayl/nostruct-align/1ayl.t04-thin90.a2m.gz, have 163457 columns in 681 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhuA/nostruct-align/1vhuA.t04-thin90.a2m.gz
# 1vhuA.t04-thin90.a2m with 184 sequences, total weight= 184 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23014 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhuA/info/1vhuA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vhuA/nostruct-align/1vhuA.t04-thin90.a2m.gz, have 163649 columns in 682 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h2cA/nostruct-align/1h2cA.t04-thin90.a2m.gz
# 1h2cA.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00753 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h2cA/info/1h2cA.stride-mixed.near-backbone-11
WARNING: skipping b, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h2cA/nostruct-align/1h2cA.t04-thin90.a2m.gz, have 163773 columns in 683 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/5n/5nul/nostruct-align/5nul.t04-thin90.a2m.gz
# 5nul.t04-thin90.a2m with 771 sequences, total weight= 771 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00326 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/5n/5nul/info/5nul.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/5n/5nul/nostruct-align/5nul.t04-thin90.a2m.gz, have 163911 columns in 684 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k7jA/nostruct-align/1k7jA.t04-thin90.a2m.gz
# 1k7jA.t04-thin90.a2m with 306 sequences, total weight= 135.099 avg weight= 0.4415 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30472 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k7jA/info/1k7jA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k7jA/nostruct-align/1k7jA.t04-thin90.a2m.gz, have 164117 columns in 685 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gqzA/nostruct-align/1gqzA.t04-thin90.a2m.gz
# 1gqzA.t04-thin90.a2m with 327 sequences, total weight= 327 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16274 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gqzA/info/1gqzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gqzA/nostruct-align/1gqzA.t04-thin90.a2m.gz, have 164391 columns in 686 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gxuA/nostruct-align/1gxuA.t04-thin90.a2m.gz
# 1gxuA.t04-thin90.a2m with 175 sequences, total weight= 42.3456 avg weight= 0.241975 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30061 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gxuA/info/1gxuA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gxuA/nostruct-align/1gxuA.t04-thin90.a2m.gz, have 164479 columns in 687 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fiuA/nostruct-align/1fiuA.t04-thin90.a2m.gz
# 1fiuA.t04-thin90.a2m with 3 sequences, total weight= 2.36271 avg weight= 0.787571 9 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fiuA/info/1fiuA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fiuA/nostruct-align/1fiuA.t04-thin90.a2m.gz, have 164765 columns in 688 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pfvA/nostruct-align/1pfvA.t04-thin90.a2m.gz
# 1pfvA.t04-thin90.a2m with 1736 sequences, total weight= 1736 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.023 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pfvA/info/1pfvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pfvA/nostruct-align/1pfvA.t04-thin90.a2m.gz, have 165312 columns in 689 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1csh/nostruct-align/1csh.t04-thin90.a2m.gz
# 1csh.t04-thin90.a2m with 331 sequences, total weight= 116.413 avg weight= 0.3517 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30207 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1csh/info/1csh.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1csh/nostruct-align/1csh.t04-thin90.a2m.gz, have 165747 columns in 690 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t1jA/nostruct-align/1t1jA.t04-thin90.a2m.gz
# 1t1jA.t04-thin90.a2m with 2 sequences, total weight= 1.93044 avg weight= 0.965221 7 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t1jA/info/1t1jA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t1jA/nostruct-align/1t1jA.t04-thin90.a2m.gz, have 165866 columns in 691 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oh4A/nostruct-align/1oh4A.t04-thin90.a2m.gz
# 1oh4A.t04-thin90.a2m with 6 sequences, total weight= 6 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2544 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oh4A/info/1oh4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oh4A/nostruct-align/1oh4A.t04-thin90.a2m.gz, have 166040 columns in 692 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1thfD/nostruct-align/1thfD.t04-thin90.a2m.gz
# 1thfD.t04-thin90.a2m with 709 sequences, total weight= 709 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07821 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1thfD/info/1thfD.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1thfD/nostruct-align/1thfD.t04-thin90.a2m.gz, have 166293 columns in 693 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/7a/7a3hA/nostruct-align/7a3hA.t04-thin90.a2m.gz
# 7a3hA.t04-thin90.a2m with 1406 sequences, total weight= 1406 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.80732 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/7a/7a3hA/info/7a3hA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/7a/7a3hA/nostruct-align/7a3hA.t04-thin90.a2m.gz, have 166593 columns in 694 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lbu/nostruct-align/1lbu.t04-thin90.a2m.gz
# 1lbu.t04-thin90.a2m with 222 sequences, total weight= 222 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06939 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lbu/info/1lbu.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lbu/nostruct-align/1lbu.t04-thin90.a2m.gz, have 166806 columns in 695 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ejxC/nostruct-align/1ejxC.t04-thin90.a2m.gz
# 1ejxC.t04-thin90.a2m with 1398 sequences, total weight= 1398 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18336 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ejxC/info/1ejxC.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ejxC/nostruct-align/1ejxC.t04-thin90.a2m.gz, have 167362 columns in 696 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tfe/nostruct-align/1tfe.t04-thin90.a2m.gz
# 1tfe.t04-thin90.a2m with 274 sequences, total weight= 50.0589 avg weight= 0.182697 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tfe/info/1tfe.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tfe/nostruct-align/1tfe.t04-thin90.a2m.gz, have 167504 columns in 697 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d2nA/nostruct-align/1d2nA.t04-thin90.a2m.gz
# 1d2nA.t04-thin90.a2m with 2291 sequences, total weight= 2291 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14787 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d2nA/info/1d2nA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d2nA/nostruct-align/1d2nA.t04-thin90.a2m.gz, have 167750 columns in 698 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qd1A/nostruct-align/1qd1A.t04-thin90.a2m.gz
# 1qd1A.t04-thin90.a2m with 24 sequences, total weight= 8.12839 avg weight= 0.338683 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qd1A/info/1qd1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qd1A/nostruct-align/1qd1A.t04-thin90.a2m.gz, have 168069 columns in 699 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ogqA/nostruct-align/1ogqA.t04-thin90.a2m.gz
# 1ogqA.t04-thin90.a2m with 2752 sequences, total weight= 2752 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00533 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ogqA/info/1ogqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ogqA/nostruct-align/1ogqA.t04-thin90.a2m.gz, have 168382 columns in 700 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v6sA/nostruct-align/1v6sA.t04-thin90.a2m.gz
# 1v6sA.t04-thin90.a2m with 288 sequences, total weight= 14.0287 avg weight= 0.0487106 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v6sA/info/1v6sA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v6sA/nostruct-align/1v6sA.t04-thin90.a2m.gz, have 168772 columns in 701 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t6uA/nostruct-align/1t6uA.t04-thin90.a2m.gz
# 1t6uA.t04-thin90.a2m with 8 sequences, total weight= 3.00502 avg weight= 0.375627 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t6uA/info/1t6uA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t6uA/nostruct-align/1t6uA.t04-thin90.a2m.gz, have 168889 columns in 702 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ekqA/nostruct-align/1ekqA.t04-thin90.a2m.gz
# 1ekqA.t04-thin90.a2m with 1093 sequences, total weight= 1093 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.93587 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ekqA/info/1ekqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ekqA/nostruct-align/1ekqA.t04-thin90.a2m.gz, have 169143 columns in 703 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1njhA/nostruct-align/1njhA.t04-thin90.a2m.gz
# 1njhA.t04-thin90.a2m with 7 sequences, total weight= 3.2216 avg weight= 0.460228 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1njhA/info/1njhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1njhA/nostruct-align/1njhA.t04-thin90.a2m.gz, have 169251 columns in 704 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xfsA/nostruct-align/1xfsA.t04-thin90.a2m.gz
# 1xfsA.t04-thin90.a2m with 371 sequences, total weight= 371 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.865264 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xfsA/info/1xfsA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xfsA/nostruct-align/1xfsA.t04-thin90.a2m.gz, have 169405 columns in 705 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lriA/nostruct-align/1lriA.t04-thin90.a2m.gz
# 1lriA.t04-thin90.a2m with 27 sequences, total weight= 5.40185 avg weight= 0.200068 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lriA/info/1lriA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lriA/nostruct-align/1lriA.t04-thin90.a2m.gz, have 169503 columns in 706 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dzkA/nostruct-align/1dzkA.t04-thin90.a2m.gz
# 1dzkA.t04-thin90.a2m with 166 sequences, total weight= 166 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09045 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dzkA/info/1dzkA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dzkA/nostruct-align/1dzkA.t04-thin90.a2m.gz, have 169651 columns in 707 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhsA/nostruct-align/1vhsA.t04-thin90.a2m.gz
# 1vhsA.t04-thin90.a2m with 2422 sequences, total weight= 2422 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.814983 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhsA/info/1vhsA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vhsA/nostruct-align/1vhsA.t04-thin90.a2m.gz, have 169816 columns in 708 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1muwA/nostruct-align/1muwA.t04-thin90.a2m.gz
# 1muwA.t04-thin90.a2m with 639 sequences, total weight= 639 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.980694 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1muwA/info/1muwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1muwA/nostruct-align/1muwA.t04-thin90.a2m.gz, have 170202 columns in 709 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1orvA/nostruct-align/1orvA.t04-thin90.a2m.gz
# 1orvA.t04-thin90.a2m with 2145 sequences, total weight= 2145 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.856467 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1orvA/info/1orvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1orvA/nostruct-align/1orvA.t04-thin90.a2m.gz, have 170930 columns in 710 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jhgA/nostruct-align/1jhgA.t04-thin90.a2m.gz
# 1jhgA.t04-thin90.a2m with 34 sequences, total weight= 17.0321 avg weight= 0.500944 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jhgA/info/1jhgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jhgA/nostruct-align/1jhgA.t04-thin90.a2m.gz, have 171031 columns in 711 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r0uA/nostruct-align/1r0uA.t04-thin90.a2m.gz
# 1r0uA.t04-thin90.a2m with 24 sequences, total weight= 24 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22098 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r0uA/info/1r0uA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r0uA/nostruct-align/1r0uA.t04-thin90.a2m.gz, have 171173 columns in 712 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ed8A/nostruct-align/1ed8A.t04-thin90.a2m.gz
# 1ed8A.t04-thin90.a2m with 455 sequences, total weight= 455 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01377 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ed8A/info/1ed8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ed8A/nostruct-align/1ed8A.t04-thin90.a2m.gz, have 171622 columns in 713 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kngA/nostruct-align/1kngA.t04-thin90.a2m.gz
# 1kngA.t04-thin90.a2m with 2286 sequences, total weight= 2286 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.989005 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kngA/info/1kngA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kngA/nostruct-align/1kngA.t04-thin90.a2m.gz, have 171766 columns in 714 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gmuA/nostruct-align/1gmuA.t04-thin90.a2m.gz
# 1gmuA.t04-thin90.a2m with 67 sequences, total weight= 46.5223 avg weight= 0.694362 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gmuA/info/1gmuA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gmuA/nostruct-align/1gmuA.t04-thin90.a2m.gz, have 171904 columns in 715 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1aohA/nostruct-align/1aohA.t04-thin90.a2m.gz
# 1aohA.t04-thin90.a2m with 39 sequences, total weight= 12.2497 avg weight= 0.314094 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1aohA/info/1aohA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1aohA/nostruct-align/1aohA.t04-thin90.a2m.gz, have 172047 columns in 716 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g6gA/nostruct-align/1g6gA.t04-thin90.a2m.gz
# 1g6gA.t04-thin90.a2m with 437 sequences, total weight= 437 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.967914 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g6gA/info/1g6gA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g6gA/nostruct-align/1g6gA.t04-thin90.a2m.gz, have 172174 columns in 717 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1din/nostruct-align/1din.t04-thin90.a2m.gz
# 1din.t04-thin90.a2m with 2331 sequences, total weight= 2331 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.831788 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1din/info/1din.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1din/nostruct-align/1din.t04-thin90.a2m.gz, have 172407 columns in 718 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gyvA/nostruct-align/1gyvA.t04-thin90.a2m.gz
# 1gyvA.t04-thin90.a2m with 44 sequences, total weight= 30.6068 avg weight= 0.69561 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gyvA/info/1gyvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gyvA/nostruct-align/1gyvA.t04-thin90.a2m.gz, have 172527 columns in 719 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1ls9A/nostruct-align/1ls9A.t04-thin90.a2m.gz
# 1ls9A.t04-thin90.a2m with 868 sequences, total weight= 868 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1073 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1ls9A/info/1ls9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1ls9A/nostruct-align/1ls9A.t04-thin90.a2m.gz, have 172618 columns in 720 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o3uA/nostruct-align/1o3uA.t04-thin90.a2m.gz
# 1o3uA.t04-thin90.a2m with 76 sequences, total weight= 76 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2297 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o3uA/info/1o3uA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o3uA/nostruct-align/1o3uA.t04-thin90.a2m.gz, have 172738 columns in 721 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e19A/nostruct-align/1e19A.t04-thin90.a2m.gz
# 1e19A.t04-thin90.a2m with 658 sequences, total weight= 658 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17428 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e19A/info/1e19A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e19A/nostruct-align/1e19A.t04-thin90.a2m.gz, have 173051 columns in 722 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iujA/nostruct-align/1iujA.t04-thin90.a2m.gz
# 1iujA.t04-thin90.a2m with 232 sequences, total weight= 232 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.971108 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iujA/info/1iujA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iujA/nostruct-align/1iujA.t04-thin90.a2m.gz, have 173153 columns in 723 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g5aA/nostruct-align/1g5aA.t04-thin90.a2m.gz
# 1g5aA.t04-thin90.a2m with 1316 sequences, total weight= 1316 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04322 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g5aA/info/1g5aA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g5aA/nostruct-align/1g5aA.t04-thin90.a2m.gz, have 173781 columns in 724 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jtvA/nostruct-align/1jtvA.t04-thin90.a2m.gz
# 1jtvA.t04-thin90.a2m with 2365 sequences, total weight= 321.275 avg weight= 0.135846 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32675 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jtvA/info/1jtvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jtvA/nostruct-align/1jtvA.t04-thin90.a2m.gz, have 174059 columns in 725 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1ako/nostruct-align/1ako.t04-thin90.a2m.gz
# 1ako.t04-thin90.a2m with 1092 sequences, total weight= 1092 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.853754 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1ako/info/1ako.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1ako/nostruct-align/1ako.t04-thin90.a2m.gz, have 174327 columns in 726 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ijyA/nostruct-align/1ijyA.t04-thin90.a2m.gz
# 1ijyA.t04-thin90.a2m with 81 sequences, total weight= 30.8018 avg weight= 0.380269 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ijyA/info/1ijyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ijyA/nostruct-align/1ijyA.t04-thin90.a2m.gz, have 174449 columns in 727 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nh0A/nostruct-align/1nh0A.t04-thin90.a2m.gz
# 1nh0A.t04-thin90.a2m with 2 sequences, total weight= 1.74124 avg weight= 0.870622 7 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nh0A/info/1nh0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nh0A/nostruct-align/1nh0A.t04-thin90.a2m.gz, have 174548 columns in 728 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k2eA/nostruct-align/1k2eA.t04-thin90.a2m.gz
# 1k2eA.t04-thin90.a2m with 1553 sequences, total weight= 1553 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.832023 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k2eA/info/1k2eA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k2eA/nostruct-align/1k2eA.t04-thin90.a2m.gz, have 174700 columns in 729 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f5nA/nostruct-align/1f5nA.t04-thin90.a2m.gz
# 1f5nA.t04-thin90.a2m with 1437 sequences, total weight= 1437 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.958443 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f5nA/info/1f5nA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f5nA/nostruct-align/1f5nA.t04-thin90.a2m.gz, have 175270 columns in 730 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uuzA/nostruct-align/1uuzA.t04-thin90.a2m.gz
# 1uuzA.t04-thin90.a2m with 9 sequences, total weight= 6.71441 avg weight= 0.746045 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uuzA/info/1uuzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uuzA/nostruct-align/1uuzA.t04-thin90.a2m.gz, have 175399 columns in 731 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cex/nostruct-align/1cex.t04-thin90.a2m.gz
# 1cex.t04-thin90.a2m with 151 sequences, total weight= 151 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07718 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cex/info/1cex.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cex/nostruct-align/1cex.t04-thin90.a2m.gz, have 175596 columns in 732 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pdo/nostruct-align/1pdo.t04-thin90.a2m.gz
# 1pdo.t04-thin90.a2m with 148 sequences, total weight= 130.693 avg weight= 0.883058 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30069 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pdo/info/1pdo.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pdo/nostruct-align/1pdo.t04-thin90.a2m.gz, have 175725 columns in 733 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j98A/nostruct-align/1j98A.t04-thin90.a2m.gz
# 1j98A.t04-thin90.a2m with 45 sequences, total weight= 6.79708 avg weight= 0.151046 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j98A/info/1j98A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j98A/nostruct-align/1j98A.t04-thin90.a2m.gz, have 175879 columns in 734 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qqfA/nostruct-align/1qqfA.t04-thin90.a2m.gz
# 1qqfA.t04-thin90.a2m with 294 sequences, total weight= 294 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11974 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qqfA/info/1qqfA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qqfA/nostruct-align/1qqfA.t04-thin90.a2m.gz, have 176156 columns in 735 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gy7A/nostruct-align/1gy7A.t04-thin90.a2m.gz
# 1gy7A.t04-thin90.a2m with 87 sequences, total weight= 54.8041 avg weight= 0.629933 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gy7A/info/1gy7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gy7A/nostruct-align/1gy7A.t04-thin90.a2m.gz, have 176277 columns in 736 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a3aA/nostruct-align/1a3aA.t04-thin90.a2m.gz
# 1a3aA.t04-thin90.a2m with 360 sequences, total weight= 360 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22209 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a3aA/info/1a3aA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a3aA/nostruct-align/1a3aA.t04-thin90.a2m.gz, have 176422 columns in 737 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jidA/nostruct-align/1jidA.t04-thin90.a2m.gz
# 1jidA.t04-thin90.a2m with 46 sequences, total weight= 23.749 avg weight= 0.516282 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jidA/info/1jidA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jidA/nostruct-align/1jidA.t04-thin90.a2m.gz, have 176536 columns in 738 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kv7A/nostruct-align/1kv7A.t04-thin90.a2m.gz
# 1kv7A.t04-thin90.a2m with 694 sequences, total weight= 694 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09459 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kv7A/info/1kv7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kv7A/nostruct-align/1kv7A.t04-thin90.a2m.gz, have 176999 columns in 739 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l2hA/nostruct-align/1l2hA.t04-thin90.a2m.gz
# 1l2hA.t04-thin90.a2m with 80 sequences, total weight= 29.6994 avg weight= 0.371242 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l2hA/info/1l2hA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l2hA/nostruct-align/1l2hA.t04-thin90.a2m.gz, have 177143 columns in 740 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gvdA/nostruct-align/1gvdA.t04-thin90.a2m.gz
# 1gvdA.t04-thin90.a2m with 663 sequences, total weight= 36.6513 avg weight= 0.0552809 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30035 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gvdA/info/1gvdA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gvdA/nostruct-align/1gvdA.t04-thin90.a2m.gz, have 177195 columns in 741 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w1oA/nostruct-align/1w1oA.t04-thin90.a2m.gz
# 1w1oA.t04-thin90.a2m with 1087 sequences, total weight= 1087 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.867741 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w1oA/info/1w1oA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w1oA/nostruct-align/1w1oA.t04-thin90.a2m.gz, have 177674 columns in 742 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/4f/4fiv/nostruct-align/4fiv.t04-thin90.a2m.gz
# 4fiv.t04-thin90.a2m with 10 sequences, total weight= 3.21911 avg weight= 0.321911 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/4f/4fiv/info/4fiv.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/4f/4fiv/nostruct-align/4fiv.t04-thin90.a2m.gz, have 177787 columns in 743 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1atzA/nostruct-align/1atzA.t04-thin90.a2m.gz
# 1atzA.t04-thin90.a2m with 1046 sequences, total weight= 1046 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.961005 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1atzA/info/1atzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1atzA/nostruct-align/1atzA.t04-thin90.a2m.gz, have 177971 columns in 744 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kmtA/nostruct-align/1kmtA.t04-thin90.a2m.gz
# 1kmtA.t04-thin90.a2m with 38 sequences, total weight= 13.98 avg weight= 0.367895 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kmtA/info/1kmtA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kmtA/nostruct-align/1kmtA.t04-thin90.a2m.gz, have 178109 columns in 745 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v9yA/nostruct-align/1v9yA.t04-thin90.a2m.gz
# 1v9yA.t04-thin90.a2m with 3343 sequences, total weight= 3343 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06346 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v9yA/info/1v9yA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v9yA/nostruct-align/1v9yA.t04-thin90.a2m.gz, have 178212 columns in 746 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lj8A/nostruct-align/1lj8A.t04-thin90.a2m.gz
# 1lj8A.t04-thin90.a2m with 116 sequences, total weight= 58.3912 avg weight= 0.503373 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lj8A/info/1lj8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lj8A/nostruct-align/1lj8A.t04-thin90.a2m.gz, have 178704 columns in 747 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1ji1A/nostruct-align/1ji1A.t04-thin90.a2m.gz
# 1ji1A.t04-thin90.a2m with 1329 sequences, total weight= 1329 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01809 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1ji1A/info/1ji1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1ji1A/nostruct-align/1ji1A.t04-thin90.a2m.gz, have 179341 columns in 748 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h6hA/nostruct-align/1h6hA.t04-thin90.a2m.gz
# 1h6hA.t04-thin90.a2m with 217 sequences, total weight= 217 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08375 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h6hA/info/1h6hA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h6hA/nostruct-align/1h6hA.t04-thin90.a2m.gz, have 179484 columns in 749 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ocyA/nostruct-align/1ocyA.t04-thin90.a2m.gz
# 1ocyA.t04-thin90.a2m with 99 sequences, total weight= 99 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25474 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ocyA/info/1ocyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ocyA/nostruct-align/1ocyA.t04-thin90.a2m.gz, have 179682 columns in 750 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fobA/nostruct-align/1fobA.t04-thin90.a2m.gz
# 1fobA.t04-thin90.a2m with 477 sequences, total weight= 477 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.820188 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fobA/info/1fobA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fobA/nostruct-align/1fobA.t04-thin90.a2m.gz, have 180016 columns in 751 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h2wA/nostruct-align/1h2wA.t04-thin90.a2m.gz
# 1h2wA.t04-thin90.a2m with 2238 sequences, total weight= 2238 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.87231 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h2wA/info/1h2wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h2wA/nostruct-align/1h2wA.t04-thin90.a2m.gz, have 180726 columns in 752 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kwgA/nostruct-align/1kwgA.t04-thin90.a2m.gz
# 1kwgA.t04-thin90.a2m with 341 sequences, total weight= 341 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.891725 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kwgA/info/1kwgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kwgA/nostruct-align/1kwgA.t04-thin90.a2m.gz, have 181370 columns in 753 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dwkA/nostruct-align/1dwkA.t04-thin90.a2m.gz
# 1dwkA.t04-thin90.a2m with 35 sequences, total weight= 9.56828 avg weight= 0.273379 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dwkA/info/1dwkA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dwkA/nostruct-align/1dwkA.t04-thin90.a2m.gz, have 181526 columns in 754 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h2bA/nostruct-align/1h2bA.t04-thin90.a2m.gz
# 1h2bA.t04-thin90.a2m with 1864 sequences, total weight= 1864 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26919 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h2bA/info/1h2bA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h2bA/nostruct-align/1h2bA.t04-thin90.a2m.gz, have 181869 columns in 755 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uf5A/nostruct-align/1uf5A.t04-thin90.a2m.gz
# 1uf5A.t04-thin90.a2m with 701 sequences, total weight= 701 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05915 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uf5A/info/1uf5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uf5A/nostruct-align/1uf5A.t04-thin90.a2m.gz, have 182172 columns in 756 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ijbA/nostruct-align/1ijbA.t04-thin90.a2m.gz
# 1ijbA.t04-thin90.a2m with 1087 sequences, total weight= 1087 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.953688 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ijbA/info/1ijbA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ijbA/nostruct-align/1ijbA.t04-thin90.a2m.gz, have 182374 columns in 757 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lqvA/nostruct-align/1lqvA.t04-thin90.a2m.gz
# 1lqvA.t04-thin90.a2m with 651 sequences, total weight= 12.6576 avg weight= 0.0194433 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lqvA/info/1lqvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lqvA/nostruct-align/1lqvA.t04-thin90.a2m.gz, have 182546 columns in 758 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dowA/nostruct-align/1dowA.t04-thin90.a2m.gz
# 1dowA.t04-thin90.a2m with 19 sequences, total weight= 10.7234 avg weight= 0.564392 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dowA/info/1dowA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dowA/nostruct-align/1dowA.t04-thin90.a2m.gz, have 182751 columns in 759 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cc8A/nostruct-align/1cc8A.t04-thin90.a2m.gz
# 1cc8A.t04-thin90.a2m with 222 sequences, total weight= 66.0762 avg weight= 0.297641 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30174 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cc8A/info/1cc8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cc8A/nostruct-align/1cc8A.t04-thin90.a2m.gz, have 182823 columns in 760 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qf8A/nostruct-align/1qf8A.t04-thin90.a2m.gz
# 1qf8A.t04-thin90.a2m with 37 sequences, total weight= 7.9599 avg weight= 0.215132 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qf8A/info/1qf8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qf8A/nostruct-align/1qf8A.t04-thin90.a2m.gz, have 182990 columns in 761 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gsoA/nostruct-align/1gsoA.t04-thin90.a2m.gz
# 1gsoA.t04-thin90.a2m with 1821 sequences, total weight= 1821 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0239 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gsoA/info/1gsoA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gsoA/nostruct-align/1gsoA.t04-thin90.a2m.gz, have 183409 columns in 762 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d0cA/nostruct-align/1d0cA.t04-thin90.a2m.gz
# 1d0cA.t04-thin90.a2m with 37 sequences, total weight= 6.01388 avg weight= 0.162537 25 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d0cA/info/1d0cA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d0cA/nostruct-align/1d0cA.t04-thin90.a2m.gz, have 183825 columns in 763 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gq6A/nostruct-align/1gq6A.t04-thin90.a2m.gz
# 1gq6A.t04-thin90.a2m with 248 sequences, total weight= 248 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25683 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gq6A/info/1gq6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gq6A/nostruct-align/1gq6A.t04-thin90.a2m.gz, have 184120 columns in 764 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oaa/nostruct-align/1oaa.t04-thin90.a2m.gz
# 1oaa.t04-thin90.a2m with 2399 sequences, total weight= 158.376 avg weight= 0.0660177 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32929 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oaa/info/1oaa.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oaa/nostruct-align/1oaa.t04-thin90.a2m.gz, have 184379 columns in 765 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rqpA/nostruct-align/1rqpA.t04-thin90.a2m.gz
# 1rqpA.t04-thin90.a2m with 45 sequences, total weight= 19.9973 avg weight= 0.444385 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rqpA/info/1rqpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rqpA/nostruct-align/1rqpA.t04-thin90.a2m.gz, have 184670 columns in 766 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/4u/4uagA/nostruct-align/4uagA.t04-thin90.a2m.gz
# 4uagA.t04-thin90.a2m with 908 sequences, total weight= 908 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0959 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/4u/4uagA/info/4uagA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/4u/4uagA/nostruct-align/4uagA.t04-thin90.a2m.gz, have 185099 columns in 767 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vpt/nostruct-align/1vpt.t04-thin90.a2m.gz
# 1vpt.t04-thin90.a2m with 15 sequences, total weight= 8.15505 avg weight= 0.54367 20 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vpt/info/1vpt.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vpt/nostruct-align/1vpt.t04-thin90.a2m.gz, have 185390 columns in 768 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p4cA/nostruct-align/1p4cA.t04-thin90.a2m.gz
# 1p4cA.t04-thin90.a2m with 1638 sequences, total weight= 1638 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.966861 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p4cA/info/1p4cA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p4cA/nostruct-align/1p4cA.t04-thin90.a2m.gz, have 185743 columns in 769 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l9xA/nostruct-align/1l9xA.t04-thin90.a2m.gz
# 1l9xA.t04-thin90.a2m with 1829 sequences, total weight= 1829 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.998203 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l9xA/info/1l9xA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l9xA/nostruct-align/1l9xA.t04-thin90.a2m.gz, have 186031 columns in 770 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n71A/nostruct-align/1n71A.t04-thin90.a2m.gz
# 1n71A.t04-thin90.a2m with 2153 sequences, total weight= 2153 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.842131 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n71A/info/1n71A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n71A/nostruct-align/1n71A.t04-thin90.a2m.gz, have 186211 columns in 771 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a7s/nostruct-align/1a7s.t04-thin90.a2m.gz
# 1a7s.t04-thin90.a2m with 1689 sequences, total weight= 842.378 avg weight= 0.498743 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31801 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a7s/info/1a7s.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a7s/nostruct-align/1a7s.t04-thin90.a2m.gz, have 186432 columns in 772 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p5fA/nostruct-align/1p5fA.t04-thin90.a2m.gz
# 1p5fA.t04-thin90.a2m with 725 sequences, total weight= 725 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11935 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p5fA/info/1p5fA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p5fA/nostruct-align/1p5fA.t04-thin90.a2m.gz, have 186618 columns in 773 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i58A/nostruct-align/1i58A.t04-thin90.a2m.gz
# 1i58A.t04-thin90.a2m with 2385 sequences, total weight= 265.893 avg weight= 0.111486 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32696 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i58A/info/1i58A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i58A/nostruct-align/1i58A.t04-thin90.a2m.gz, have 186807 columns in 774 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uujA/nostruct-align/1uujA.t04-thin90.a2m.gz
# 1uujA.t04-thin90.a2m with 20 sequences, total weight= 8.04178 avg weight= 0.402089 25 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uujA/info/1uujA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uujA/nostruct-align/1uujA.t04-thin90.a2m.gz, have 186883 columns in 775 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e0tA/nostruct-align/1e0tA.t04-thin90.a2m.gz
# 1e0tA.t04-thin90.a2m with 302 sequences, total weight= 28.8697 avg weight= 0.0955951 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e0tA/info/1e0tA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e0tA/nostruct-align/1e0tA.t04-thin90.a2m.gz, have 187329 columns in 776 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p0hA/nostruct-align/1p0hA.t04-thin90.a2m.gz
# 1p0hA.t04-thin90.a2m with 2418 sequences, total weight= 2418 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.899321 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p0hA/info/1p0hA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p0hA/nostruct-align/1p0hA.t04-thin90.a2m.gz, have 187619 columns in 777 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1usmA/nostruct-align/1usmA.t04-thin90.a2m.gz
# 1usmA.t04-thin90.a2m with 103 sequences, total weight= 18.4832 avg weight= 0.179449 43 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1usmA/info/1usmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1usmA/nostruct-align/1usmA.t04-thin90.a2m.gz, have 187696 columns in 778 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fr2B/nostruct-align/1fr2B.t04-thin90.a2m.gz
# 1fr2B.t04-thin90.a2m with 15 sequences, total weight= 4.58618 avg weight= 0.305745 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fr2B/info/1fr2B.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fr2B/nostruct-align/1fr2B.t04-thin90.a2m.gz, have 187827 columns in 779 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vdkA/nostruct-align/1vdkA.t04-thin90.a2m.gz
# 1vdkA.t04-thin90.a2m with 626 sequences, total weight= 219.975 avg weight= 0.351398 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30786 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vdkA/info/1vdkA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vdkA/nostruct-align/1vdkA.t04-thin90.a2m.gz, have 188285 columns in 780 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2s/2sli/nostruct-align/2sli.t04-thin90.a2m.gz
# 2sli.t04-thin90.a2m with 356 sequences, total weight= 356 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.911663 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2s/2sli/info/2sli.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2s/2sli/nostruct-align/2sli.t04-thin90.a2m.gz, have 188964 columns in 781 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dz3A/nostruct-align/1dz3A.t04-thin90.a2m.gz
# 1dz3A.t04-thin90.a2m with 2370 sequences, total weight= 113.693 avg weight= 0.0479718 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32779 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dz3A/info/1dz3A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dz3A/nostruct-align/1dz3A.t04-thin90.a2m.gz, have 189087 columns in 782 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o2dA/nostruct-align/1o2dA.t04-thin90.a2m.gz
# 1o2dA.t04-thin90.a2m with 628 sequences, total weight= 628 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14638 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o2dA/info/1o2dA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o2dA/nostruct-align/1o2dA.t04-thin90.a2m.gz, have 189446 columns in 783 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1molA/nostruct-align/1molA.t04-thin90.a2m.gz
# 1molA.t04-thin90.a2m with 3 sequences, total weight= 2.67173 avg weight= 0.890578 6 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1molA/info/1molA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1molA/nostruct-align/1molA.t04-thin90.a2m.gz, have 189540 columns in 784 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qs1A/nostruct-align/1qs1A.t04-thin90.a2m.gz
# 1qs1A.t04-thin90.a2m with 85 sequences, total weight= 85 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03748 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qs1A/info/1qs1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qs1A/nostruct-align/1qs1A.t04-thin90.a2m.gz, have 189942 columns in 785 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h4gA/nostruct-align/1h4gA.t04-thin90.a2m.gz
# 1h4gA.t04-thin90.a2m with 105 sequences, total weight= 11.5672 avg weight= 0.110164 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h4gA/info/1h4gA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h4gA/nostruct-align/1h4gA.t04-thin90.a2m.gz, have 190148 columns in 786 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m9xC/nostruct-align/1m9xC.t04-thin90.a2m.gz
# 1m9xC.t04-thin90.a2m with 86 sequences, total weight= 2.92612 avg weight= 0.0340246 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m9xC/info/1m9xC.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m9xC/nostruct-align/1m9xC.t04-thin90.a2m.gz, have 190294 columns in 787 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v8cA/nostruct-align/1v8cA.t04-thin90.a2m.gz
# 1v8cA.t04-thin90.a2m with 174 sequences, total weight= 86.6307 avg weight= 0.497878 45 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v8cA/info/1v8cA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v8cA/nostruct-align/1v8cA.t04-thin90.a2m.gz, have 190459 columns in 788 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p5zB/nostruct-align/1p5zB.t04-thin90.a2m.gz
# 1p5zB.t04-thin90.a2m with 1881 sequences, total weight= 1881 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.773522 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p5zB/info/1p5zB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p5zB/nostruct-align/1p5zB.t04-thin90.a2m.gz, have 190688 columns in 789 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1khxA/nostruct-align/1khxA.t04-thin90.a2m.gz
# 1khxA.t04-thin90.a2m with 43 sequences, total weight= 24.7236 avg weight= 0.574967 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1khxA/info/1khxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1khxA/nostruct-align/1khxA.t04-thin90.a2m.gz, have 190891 columns in 790 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1st9A/nostruct-align/1st9A.t04-thin90.a2m.gz
# 1st9A.t04-thin90.a2m with 2280 sequences, total weight= 2280 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03284 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1st9A/info/1st9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1st9A/nostruct-align/1st9A.t04-thin90.a2m.gz, have 191028 columns in 791 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mk4A/nostruct-align/1mk4A.t04-thin90.a2m.gz
# 1mk4A.t04-thin90.a2m with 2445 sequences, total weight= 2445 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.835904 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mk4A/info/1mk4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mk4A/nostruct-align/1mk4A.t04-thin90.a2m.gz, have 191185 columns in 792 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f1eA/nostruct-align/1f1eA.t04-thin90.a2m.gz
# 1f1eA.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.601427 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f1eA/info/1f1eA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f1eA/nostruct-align/1f1eA.t04-thin90.a2m.gz, have 191336 columns in 793 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nh8A/nostruct-align/1nh8A.t04-thin90.a2m.gz
# 1nh8A.t04-thin90.a2m with 133 sequences, total weight= 32.2712 avg weight= 0.242641 45 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nh8A/info/1nh8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nh8A/nostruct-align/1nh8A.t04-thin90.a2m.gz, have 191612 columns in 794 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ikpA/nostruct-align/1ikpA.t04-thin90.a2m.gz
# 1ikpA.t04-thin90.a2m with 700 sequences, total weight= 21.1674 avg weight= 0.0302392 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ikpA/info/1ikpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ikpA/nostruct-align/1ikpA.t04-thin90.a2m.gz, have 192211 columns in 795 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1swxA/nostruct-align/1swxA.t04-thin90.a2m.gz
# 1swxA.t04-thin90.a2m with 65 sequences, total weight= 45.3679 avg weight= 0.697967 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1swxA/info/1swxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1swxA/nostruct-align/1swxA.t04-thin90.a2m.gz, have 192409 columns in 796 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2n/2nlrA/nostruct-align/2nlrA.t04-thin90.a2m.gz
# 2nlrA.t04-thin90.a2m with 54 sequences, total weight= 28.9291 avg weight= 0.535724 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2n/2nlrA/info/2nlrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2n/2nlrA/nostruct-align/2nlrA.t04-thin90.a2m.gz, have 192631 columns in 797 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uebA/nostruct-align/1uebA.t04-thin90.a2m.gz
# 1uebA.t04-thin90.a2m with 218 sequences, total weight= 27.9837 avg weight= 0.128366 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uebA/info/1uebA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uebA/nostruct-align/1uebA.t04-thin90.a2m.gz, have 192815 columns in 798 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mgtA/nostruct-align/1mgtA.t04-thin90.a2m.gz
# 1mgtA.t04-thin90.a2m with 292 sequences, total weight= 222.221 avg weight= 0.761032 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30216 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mgtA/info/1mgtA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mgtA/nostruct-align/1mgtA.t04-thin90.a2m.gz, have 192984 columns in 799 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dytA/nostruct-align/1dytA.t04-thin90.a2m.gz
# 1dytA.t04-thin90.a2m with 176 sequences, total weight= 28.639 avg weight= 0.162722 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dytA/info/1dytA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dytA/nostruct-align/1dytA.t04-thin90.a2m.gz, have 193117 columns in 800 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1me4A/nostruct-align/1me4A.t04-thin90.a2m.gz
# 1me4A.t04-thin90.a2m with 834 sequences, total weight= 378.93 avg weight= 0.454353 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31287 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1me4A/info/1me4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1me4A/nostruct-align/1me4A.t04-thin90.a2m.gz, have 193332 columns in 801 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g6xA/nostruct-align/1g6xA.t04-thin90.a2m.gz
# 1g6xA.t04-thin90.a2m with 455 sequences, total weight= 82.129 avg weight= 0.180503 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30532 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g6xA/info/1g6xA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g6xA/nostruct-align/1g6xA.t04-thin90.a2m.gz, have 193390 columns in 802 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iwlA/nostruct-align/1iwlA.t04-thin90.a2m.gz
# 1iwlA.t04-thin90.a2m with 128 sequences, total weight= 128 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05709 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iwlA/info/1iwlA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iwlA/nostruct-align/1iwlA.t04-thin90.a2m.gz, have 193567 columns in 803 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k2xA/nostruct-align/1k2xA.t04-thin90.a2m.gz
# 1k2xA.t04-thin90.a2m with 89 sequences, total weight= 28.7892 avg weight= 0.323475 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k2xA/info/1k2xA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k2xA/nostruct-align/1k2xA.t04-thin90.a2m.gz, have 193723 columns in 804 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jiwI/nostruct-align/1jiwI.t04-thin90.a2m.gz
# 1jiwI.t04-thin90.a2m with 17 sequences, total weight= 8.63657 avg weight= 0.508033 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jiwI/info/1jiwI.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jiwI/nostruct-align/1jiwI.t04-thin90.a2m.gz, have 193828 columns in 805 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ogiA/nostruct-align/1ogiA.t04-thin90.a2m.gz
# 1ogiA.t04-thin90.a2m with 1254 sequences, total weight= 1254 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.959849 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ogiA/info/1ogiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ogiA/nostruct-align/1ogiA.t04-thin90.a2m.gz, have 194123 columns in 806 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mf7A/nostruct-align/1mf7A.t04-thin90.a2m.gz
# 1mf7A.t04-thin90.a2m with 1178 sequences, total weight= 1178 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.939303 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mf7A/info/1mf7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mf7A/nostruct-align/1mf7A.t04-thin90.a2m.gz, have 194317 columns in 807 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jp4A/nostruct-align/1jp4A.t04-thin90.a2m.gz
# 1jp4A.t04-thin90.a2m with 547 sequences, total weight= 547 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11293 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jp4A/info/1jp4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jp4A/nostruct-align/1jp4A.t04-thin90.a2m.gz, have 194619 columns in 808 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sjyA/nostruct-align/1sjyA.t04-thin90.a2m.gz
# 1sjyA.t04-thin90.a2m with 1660 sequences, total weight= 1660 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.81292 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sjyA/info/1sjyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sjyA/nostruct-align/1sjyA.t04-thin90.a2m.gz, have 194773 columns in 809 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1evyA/nostruct-align/1evyA.t04-thin90.a2m.gz
# 1evyA.t04-thin90.a2m with 2122 sequences, total weight= 2122 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.890204 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1evyA/info/1evyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1evyA/nostruct-align/1evyA.t04-thin90.a2m.gz, have 195119 columns in 810 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1snrA/nostruct-align/1snrA.t04-thin90.a2m.gz
# 1snrA.t04-thin90.a2m with 783 sequences, total weight= 783 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06745 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1snrA/info/1snrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1snrA/nostruct-align/1snrA.t04-thin90.a2m.gz, have 195455 columns in 811 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nkgA/nostruct-align/1nkgA.t04-thin90.a2m.gz
# 1nkgA.t04-thin90.a2m with 33 sequences, total weight= 16.8176 avg weight= 0.509624 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nkgA/info/1nkgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nkgA/nostruct-align/1nkgA.t04-thin90.a2m.gz, have 195963 columns in 812 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g12A/nostruct-align/1g12A.t04-thin90.a2m.gz
# 1g12A.t04-thin90.a2m with 40 sequences, total weight= 40 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28143 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g12A/info/1g12A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g12A/nostruct-align/1g12A.t04-thin90.a2m.gz, have 196130 columns in 813 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k3yA/nostruct-align/1k3yA.t04-thin90.a2m.gz
# 1k3yA.t04-thin90.a2m with 1756 sequences, total weight= 1756 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.98857 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k3yA/info/1k3yA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k3yA/nostruct-align/1k3yA.t04-thin90.a2m.gz, have 196351 columns in 814 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1ng6A/nostruct-align/1ng6A.t04-thin90.a2m.gz
# 1ng6A.t04-thin90.a2m with 95 sequences, total weight= 17.7302 avg weight= 0.186634 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1ng6A/info/1ng6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1ng6A/nostruct-align/1ng6A.t04-thin90.a2m.gz, have 196499 columns in 815 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1ftrA/nostruct-align/1ftrA.t04-thin90.a2m.gz
# 1ftrA.t04-thin90.a2m with 22 sequences, total weight= 5.02428 avg weight= 0.228377 20 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1ftrA/info/1ftrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1ftrA/nostruct-align/1ftrA.t04-thin90.a2m.gz, have 196795 columns in 816 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1co6A/nostruct-align/1co6A.t04-thin90.a2m.gz
# 1co6A.t04-thin90.a2m with 184 sequences, total weight= 23.2617 avg weight= 0.126422 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1co6A/info/1co6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1co6A/nostruct-align/1co6A.t04-thin90.a2m.gz, have 196902 columns in 817 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nc5A/nostruct-align/1nc5A.t04-thin90.a2m.gz
# 1nc5A.t04-thin90.a2m with 106 sequences, total weight= 106 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.99437 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nc5A/info/1nc5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nc5A/nostruct-align/1nc5A.t04-thin90.a2m.gz, have 197265 columns in 818 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3n/3nul/nostruct-align/3nul.t04-thin90.a2m.gz
# 3nul.t04-thin90.a2m with 96 sequences, total weight= 30.6355 avg weight= 0.31912 45 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3n/3nul/info/3nul.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/3n/3nul/nostruct-align/3nul.t04-thin90.a2m.gz, have 197395 columns in 819 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qj4A/nostruct-align/1qj4A.t04-thin90.a2m.gz
# 1qj4A.t04-thin90.a2m with 2366 sequences, total weight= 2366 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.790038 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qj4A/info/1qj4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qj4A/nostruct-align/1qj4A.t04-thin90.a2m.gz, have 197651 columns in 820 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g8mA/nostruct-align/1g8mA.t04-thin90.a2m.gz
# 1g8mA.t04-thin90.a2m with 164 sequences, total weight= 13.8317 avg weight= 0.0843394 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g8mA/info/1g8mA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g8mA/nostruct-align/1g8mA.t04-thin90.a2m.gz, have 198241 columns in 821 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n8vA/nostruct-align/1n8vA.t04-thin90.a2m.gz
# 1n8vA.t04-thin90.a2m with 50 sequences, total weight= 11.7681 avg weight= 0.235362 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n8vA/info/1n8vA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n8vA/nostruct-align/1n8vA.t04-thin90.a2m.gz, have 198342 columns in 822 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o8bA/nostruct-align/1o8bA.t04-thin90.a2m.gz
# 1o8bA.t04-thin90.a2m with 145 sequences, total weight= 15.9004 avg weight= 0.109658 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o8bA/info/1o8bA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o8bA/nostruct-align/1o8bA.t04-thin90.a2m.gz, have 198510 columns in 823 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f1uA/nostruct-align/1f1uA.t04-thin90.a2m.gz
# 1f1uA.t04-thin90.a2m with 1420 sequences, total weight= 1420 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.958028 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f1uA/info/1f1uA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f1uA/nostruct-align/1f1uA.t04-thin90.a2m.gz, have 198832 columns in 824 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tqjA/nostruct-align/1tqjA.t04-thin90.a2m.gz
# 1tqjA.t04-thin90.a2m with 1629 sequences, total weight= 1629 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.966443 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tqjA/info/1tqjA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tqjA/nostruct-align/1tqjA.t04-thin90.a2m.gz, have 199049 columns in 825 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k5cA/nostruct-align/1k5cA.t04-thin90.a2m.gz
# 1k5cA.t04-thin90.a2m with 318 sequences, total weight= 318 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28915 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k5cA/info/1k5cA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k5cA/nostruct-align/1k5cA.t04-thin90.a2m.gz, have 199382 columns in 826 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oneA/nostruct-align/1oneA.t04-thin90.a2m.gz
# 1oneA.t04-thin90.a2m with 528 sequences, total weight= 95.4543 avg weight= 0.180785 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30043 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oneA/info/1oneA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oneA/nostruct-align/1oneA.t04-thin90.a2m.gz, have 199818 columns in 827 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dj0A/nostruct-align/1dj0A.t04-thin90.a2m.gz
# 1dj0A.t04-thin90.a2m with 238 sequences, total weight= 84.4166 avg weight= 0.354692 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30277 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dj0A/info/1dj0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dj0A/nostruct-align/1dj0A.t04-thin90.a2m.gz, have 200082 columns in 828 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q25A/nostruct-align/1q25A.t04-thin90.a2m.gz
# 1q25A.t04-thin90.a2m with 132 sequences, total weight= 132 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28331 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q25A/info/1q25A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q25A/nostruct-align/1q25A.t04-thin90.a2m.gz, have 200510 columns in 829 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gskA/nostruct-align/1gskA.t04-thin90.a2m.gz
# 1gskA.t04-thin90.a2m with 703 sequences, total weight= 703 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07952 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gskA/info/1gskA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gskA/nostruct-align/1gskA.t04-thin90.a2m.gz, have 201012 columns in 830 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j3aA/nostruct-align/1j3aA.t04-thin90.a2m.gz
# 1j3aA.t04-thin90.a2m with 213 sequences, total weight= 31.0003 avg weight= 0.145541 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j3aA/info/1j3aA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j3aA/nostruct-align/1j3aA.t04-thin90.a2m.gz, have 201141 columns in 831 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jy1A/nostruct-align/1jy1A.t04-thin90.a2m.gz
# 1jy1A.t04-thin90.a2m with 26 sequences, total weight= 26 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2797 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jy1A/info/1jy1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jy1A/nostruct-align/1jy1A.t04-thin90.a2m.gz, have 201580 columns in 832 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i27A/nostruct-align/1i27A.t04-thin90.a2m.gz
# 1i27A.t04-thin90.a2m with 7 sequences, total weight= 3.57044 avg weight= 0.510063 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i27A/info/1i27A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i27A/nostruct-align/1i27A.t04-thin90.a2m.gz, have 201653 columns in 833 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tgsI/nostruct-align/1tgsI.t04-thin90.a2m.gz
# 1tgsI.t04-thin90.a2m with 228 sequences, total weight= 74.9276 avg weight= 0.32863 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30532 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tgsI/info/1tgsI.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tgsI/nostruct-align/1tgsI.t04-thin90.a2m.gz, have 201709 columns in 834 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dgwA/nostruct-align/1dgwA.t04-thin90.a2m.gz
# 1dgwA.t04-thin90.a2m with 473 sequences, total weight= 473 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16734 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dgwA/info/1dgwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dgwA/nostruct-align/1dgwA.t04-thin90.a2m.gz, have 201887 columns in 835 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w50A/nostruct-align/1w50A.t04-thin90.a2m.gz
# 1w50A.t04-thin90.a2m with 813 sequences, total weight= 813 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17036 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w50A/info/1w50A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w50A/nostruct-align/1w50A.t04-thin90.a2m.gz, have 202264 columns in 836 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gx5A/nostruct-align/1gx5A.t04-thin90.a2m.gz
# 1gx5A.t04-thin90.a2m with 300 sequences, total weight= 300 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26462 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gx5A/info/1gx5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gx5A/nostruct-align/1gx5A.t04-thin90.a2m.gz, have 202794 columns in 837 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hztA/nostruct-align/1hztA.t04-thin90.a2m.gz
# 1hztA.t04-thin90.a2m with 1540 sequences, total weight= 1540 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.851125 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hztA/info/1hztA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hztA/nostruct-align/1hztA.t04-thin90.a2m.gz, have 202947 columns in 838 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1owlA/nostruct-align/1owlA.t04-thin90.a2m.gz
# 1owlA.t04-thin90.a2m with 270 sequences, total weight= 270 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25733 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1owlA/info/1owlA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1owlA/nostruct-align/1owlA.t04-thin90.a2m.gz, have 203420 columns in 839 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fpoA/nostruct-align/1fpoA.t04-thin90.a2m.gz
# 1fpoA.t04-thin90.a2m with 1239 sequences, total weight= 1239 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.973261 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fpoA/info/1fpoA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fpoA/nostruct-align/1fpoA.t04-thin90.a2m.gz, have 203591 columns in 840 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rrmA/nostruct-align/1rrmA.t04-thin90.a2m.gz
# 1rrmA.t04-thin90.a2m with 700 sequences, total weight= 700 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13282 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rrmA/info/1rrmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rrmA/nostruct-align/1rrmA.t04-thin90.a2m.gz, have 203976 columns in 841 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qsaA/nostruct-align/1qsaA.t04-thin90.a2m.gz
# 1qsaA.t04-thin90.a2m with 416 sequences, total weight= 416 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.94803 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qsaA/info/1qsaA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qsaA/nostruct-align/1qsaA.t04-thin90.a2m.gz, have 204594 columns in 842 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ohlA/nostruct-align/1ohlA.t04-thin90.a2m.gz
# 1ohlA.t04-thin90.a2m with 172 sequences, total weight= 9.90418 avg weight= 0.0575824 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ohlA/info/1ohlA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ohlA/nostruct-align/1ohlA.t04-thin90.a2m.gz, have 204934 columns in 843 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oygA/nostruct-align/1oygA.t04-thin90.a2m.gz
# 1oygA.t04-thin90.a2m with 33 sequences, total weight= 20.665 avg weight= 0.626212 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oygA/info/1oygA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oygA/nostruct-align/1oygA.t04-thin90.a2m.gz, have 205374 columns in 844 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1khcA/nostruct-align/1khcA.t04-thin90.a2m.gz
# 1khcA.t04-thin90.a2m with 100 sequences, total weight= 100 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01718 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1khcA/info/1khcA.stride-mixed.near-backbone-11
WARNING: skipping f, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1k/1khcA/nostruct-align/1khcA.t04-thin90.a2m.gz, have 205509 columns in 845 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nlqA/nostruct-align/1nlqA.t04-thin90.a2m.gz
# 1nlqA.t04-thin90.a2m with 20 sequences, total weight= 8.92385 avg weight= 0.446193 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nlqA/info/1nlqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nlqA/nostruct-align/1nlqA.t04-thin90.a2m.gz, have 205614 columns in 846 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b2pA/nostruct-align/1b2pA.t04-thin90.a2m.gz
# 1b2pA.t04-thin90.a2m with 101 sequences, total weight= 38.8378 avg weight= 0.384533 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b2pA/info/1b2pA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1b2pA/nostruct-align/1b2pA.t04-thin90.a2m.gz, have 205733 columns in 847 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ugpA/nostruct-align/1ugpA.t04-thin90.a2m.gz
# 1ugpA.t04-thin90.a2m with 29 sequences, total weight= 7.26113 avg weight= 0.250384 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ugpA/info/1ugpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ugpA/nostruct-align/1ugpA.t04-thin90.a2m.gz, have 205936 columns in 848 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o8xA/nostruct-align/1o8xA.t04-thin90.a2m.gz
# 1o8xA.t04-thin90.a2m with 1974 sequences, total weight= 1974 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.009 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o8xA/info/1o8xA.stride-mixed.near-backbone-11
WARNING: skipping a, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o8xA/nostruct-align/1o8xA.t04-thin90.a2m.gz, have 206079 columns in 849 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nulA/nostruct-align/1nulA.t04-thin90.a2m.gz
# 1nulA.t04-thin90.a2m with 482 sequences, total weight= 482 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13804 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nulA/info/1nulA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nulA/nostruct-align/1nulA.t04-thin90.a2m.gz, have 206221 columns in 850 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lugA/nostruct-align/1lugA.t04-thin90.a2m.gz
# 1lugA.t04-thin90.a2m with 186 sequences, total weight= 82.5507 avg weight= 0.443821 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30106 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lugA/info/1lugA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lugA/nostruct-align/1lugA.t04-thin90.a2m.gz, have 206480 columns in 851 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tca/nostruct-align/1tca.t04-thin90.a2m.gz
# 1tca.t04-thin90.a2m with 2328 sequences, total weight= 2328 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.888775 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tca/info/1tca.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tca/nostruct-align/1tca.t04-thin90.a2m.gz, have 206797 columns in 852 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1behA/nostruct-align/1behA.t04-thin90.a2m.gz
# 1behA.t04-thin90.a2m with 214 sequences, total weight= 214 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21852 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1behA/info/1behA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1behA/nostruct-align/1behA.t04-thin90.a2m.gz, have 206981 columns in 853 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oaiA/nostruct-align/1oaiA.t04-thin90.a2m.gz
# 1oaiA.t04-thin90.a2m with 10 sequences, total weight= 4.34915 avg weight= 0.434915 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oaiA/info/1oaiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oaiA/nostruct-align/1oaiA.t04-thin90.a2m.gz, have 207040 columns in 854 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sgwA/nostruct-align/1sgwA.t04-thin90.a2m.gz
# 1sgwA.t04-thin90.a2m with 2179 sequences, total weight= 20.7217 avg weight= 0.00950975 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sgwA/info/1sgwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sgwA/nostruct-align/1sgwA.t04-thin90.a2m.gz, have 207240 columns in 855 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nkiA/nostruct-align/1nkiA.t04-thin90.a2m.gz
# 1nkiA.t04-thin90.a2m with 1732 sequences, total weight= 1732 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.831123 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nkiA/info/1nkiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nkiA/nostruct-align/1nkiA.t04-thin90.a2m.gz, have 207374 columns in 856 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rv9A/nostruct-align/1rv9A.t04-thin90.a2m.gz
# 1rv9A.t04-thin90.a2m with 140 sequences, total weight= 44.7565 avg weight= 0.319689 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rv9A/info/1rv9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rv9A/nostruct-align/1rv9A.t04-thin90.a2m.gz, have 207616 columns in 857 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v58A/nostruct-align/1v58A.t04-thin90.a2m.gz
# 1v58A.t04-thin90.a2m with 524 sequences, total weight= 524 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.899841 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v58A/info/1v58A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v58A/nostruct-align/1v58A.t04-thin90.a2m.gz, have 207845 columns in 858 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kllA/nostruct-align/1kllA.t04-thin90.a2m.gz
# 1kllA.t04-thin90.a2m with 1638 sequences, total weight= 1638 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.817344 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kllA/info/1kllA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kllA/nostruct-align/1kllA.t04-thin90.a2m.gz, have 207973 columns in 859 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u4gA/nostruct-align/1u4gA.t04-thin90.a2m.gz
# 1u4gA.t04-thin90.a2m with 139 sequences, total weight= 115.721 avg weight= 0.832522 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30035 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u4gA/info/1u4gA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1u4gA/nostruct-align/1u4gA.t04-thin90.a2m.gz, have 208271 columns in 860 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1roaA/nostruct-align/1roaA.t04-thin90.a2m.gz
# 1roaA.t04-thin90.a2m with 220 sequences, total weight= 220 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17781 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1roaA/info/1roaA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1roaA/nostruct-align/1roaA.t04-thin90.a2m.gz, have 208382 columns in 861 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1ctf/nostruct-align/1ctf.t04-thin90.a2m.gz
# 1ctf.t04-thin90.a2m with 178 sequences, total weight= 7.47705 avg weight= 0.0420059 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1ctf/info/1ctf.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1ctf/nostruct-align/1ctf.t04-thin90.a2m.gz, have 208450 columns in 862 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gai/nostruct-align/1gai.t04-thin90.a2m.gz
# 1gai.t04-thin90.a2m with 94 sequences, total weight= 94 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23217 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gai/info/1gai.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gai/nostruct-align/1gai.t04-thin90.a2m.gz, have 208922 columns in 863 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jsdB/nostruct-align/1jsdB.t04-thin90.a2m.gz
# 1jsdB.t04-thin90.a2m with 23 sequences, total weight= 4.25038 avg weight= 0.184799 19 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jsdB/info/1jsdB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jsdB/nostruct-align/1jsdB.t04-thin90.a2m.gz, have 209082 columns in 864 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2p/2pth/nostruct-align/2pth.t04-thin90.a2m.gz
# 2pth.t04-thin90.a2m with 178 sequences, total weight= 28.4314 avg weight= 0.159727 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2p/2pth/info/2pth.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2p/2pth/nostruct-align/2pth.t04-thin90.a2m.gz, have 209275 columns in 865 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e9gA/nostruct-align/1e9gA.t04-thin90.a2m.gz
# 1e9gA.t04-thin90.a2m with 182 sequences, total weight= 47.2588 avg weight= 0.259664 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e9gA/info/1e9gA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e9gA/nostruct-align/1e9gA.t04-thin90.a2m.gz, have 209559 columns in 866 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lucA/nostruct-align/1lucA.t04-thin90.a2m.gz
# 1lucA.t04-thin90.a2m with 630 sequences, total weight= 630 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12097 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lucA/info/1lucA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lucA/nostruct-align/1lucA.t04-thin90.a2m.gz, have 209885 columns in 867 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sg6A/nostruct-align/1sg6A.t04-thin90.a2m.gz
# 1sg6A.t04-thin90.a2m with 685 sequences, total weight= 685 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16425 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sg6A/info/1sg6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sg6A/nostruct-align/1sg6A.t04-thin90.a2m.gz, have 210262 columns in 868 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s5aA/nostruct-align/1s5aA.t04-thin90.a2m.gz
# 1s5aA.t04-thin90.a2m with 361 sequences, total weight= 361 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.893056 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s5aA/info/1s5aA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s5aA/nostruct-align/1s5aA.t04-thin90.a2m.gz, have 210401 columns in 869 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h1nA/nostruct-align/1h1nA.t04-thin90.a2m.gz
# 1h1nA.t04-thin90.a2m with 1298 sequences, total weight= 1298 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.831458 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h1nA/info/1h1nA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h1nA/nostruct-align/1h1nA.t04-thin90.a2m.gz, have 210706 columns in 870 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gpiA/nostruct-align/1gpiA.t04-thin90.a2m.gz
# 1gpiA.t04-thin90.a2m with 67 sequences, total weight= 6.94999 avg weight= 0.103731 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gpiA/info/1gpiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gpiA/nostruct-align/1gpiA.t04-thin90.a2m.gz, have 211137 columns in 871 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1df4A/nostruct-align/1df4A.t04-thin90.a2m.gz
# 1df4A.t04-thin90.a2m with 290 sequences, total weight= 4.71245 avg weight= 0.0162498 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1df4A/info/1df4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1df4A/nostruct-align/1df4A.t04-thin90.a2m.gz, have 211194 columns in 872 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hxn/nostruct-align/1hxn.t04-thin90.a2m.gz
# 1hxn.t04-thin90.a2m with 181 sequences, total weight= 181 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27888 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hxn/info/1hxn.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hxn/nostruct-align/1hxn.t04-thin90.a2m.gz, have 211404 columns in 873 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f8mA/nostruct-align/1f8mA.t04-thin90.a2m.gz
# 1f8mA.t04-thin90.a2m with 227 sequences, total weight= 73.6099 avg weight= 0.324273 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f8mA/info/1f8mA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f8mA/nostruct-align/1f8mA.t04-thin90.a2m.gz, have 211831 columns in 874 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1earA/nostruct-align/1earA.t04-thin90.a2m.gz
# 1earA.t04-thin90.a2m with 68 sequences, total weight= 43.9975 avg weight= 0.647023 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1earA/info/1earA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1earA/nostruct-align/1earA.t04-thin90.a2m.gz, have 211973 columns in 875 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h4rA/nostruct-align/1h4rA.t04-thin90.a2m.gz
# 1h4rA.t04-thin90.a2m with 287 sequences, total weight= 287 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03521 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h4rA/info/1h4rA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h4rA/nostruct-align/1h4rA.t04-thin90.a2m.gz, have 212267 columns in 876 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r9wA/nostruct-align/1r9wA.t04-thin90.a2m.gz
# 1r9wA.t04-thin90.a2m with 89 sequences, total weight= 11.2789 avg weight= 0.12673 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r9wA/info/1r9wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r9wA/nostruct-align/1r9wA.t04-thin90.a2m.gz, have 212405 columns in 877 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qo7A/nostruct-align/1qo7A.t04-thin90.a2m.gz
# 1qo7A.t04-thin90.a2m with 2357 sequences, total weight= 2357 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.85961 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qo7A/info/1qo7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qo7A/nostruct-align/1qo7A.t04-thin90.a2m.gz, have 212790 columns in 878 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j30A/nostruct-align/1j30A.t04-thin90.a2m.gz
# 1j30A.t04-thin90.a2m with 126 sequences, total weight= 126 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2786 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j30A/info/1j30A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j30A/nostruct-align/1j30A.t04-thin90.a2m.gz, have 212931 columns in 879 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nzjA/nostruct-align/1nzjA.t04-thin90.a2m.gz
# 1nzjA.t04-thin90.a2m with 1346 sequences, total weight= 1346 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00153 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nzjA/info/1nzjA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nzjA/nostruct-align/1nzjA.t04-thin90.a2m.gz, have 213204 columns in 880 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vimA/nostruct-align/1vimA.t04-thin90.a2m.gz
# 1vimA.t04-thin90.a2m with 1055 sequences, total weight= 1055 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.989025 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vimA/info/1vimA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vimA/nostruct-align/1vimA.t04-thin90.a2m.gz, have 213396 columns in 881 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oa8A/nostruct-align/1oa8A.t04-thin90.a2m.gz
# 1oa8A.t04-thin90.a2m with 9 sequences, total weight= 6.3394 avg weight= 0.704378 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oa8A/info/1oa8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oa8A/nostruct-align/1oa8A.t04-thin90.a2m.gz, have 213524 columns in 882 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m65A/nostruct-align/1m65A.t04-thin90.a2m.gz
# 1m65A.t04-thin90.a2m with 529 sequences, total weight= 529 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.896793 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m65A/info/1m65A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m65A/nostruct-align/1m65A.t04-thin90.a2m.gz, have 213758 columns in 883 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e2kA/nostruct-align/1e2kA.t04-thin90.a2m.gz
# 1e2kA.t04-thin90.a2m with 236 sequences, total weight= 236 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14405 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e2kA/info/1e2kA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e2kA/nostruct-align/1e2kA.t04-thin90.a2m.gz, have 214066 columns in 884 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eyeA/nostruct-align/1eyeA.t04-thin90.a2m.gz
# 1eyeA.t04-thin90.a2m with 290 sequences, total weight= 108.159 avg weight= 0.372961 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.303 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eyeA/info/1eyeA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eyeA/nostruct-align/1eyeA.t04-thin90.a2m.gz, have 214322 columns in 885 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cs6A/nostruct-align/1cs6A.t04-thin90.a2m.gz
# 1cs6A.t04-thin90.a2m with 2153 sequences, total weight= 2153 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.864112 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cs6A/info/1cs6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cs6A/nostruct-align/1cs6A.t04-thin90.a2m.gz, have 214704 columns in 886 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u7gA/nostruct-align/1u7gA.t04-thin90.a2m.gz
# 1u7gA.t04-thin90.a2m with 419 sequences, total weight= 60.1073 avg weight= 0.143454 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3005 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u7gA/info/1u7gA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1u7gA/nostruct-align/1u7gA.t04-thin90.a2m.gz, have 215087 columns in 887 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kaeA/nostruct-align/1kaeA.t04-thin90.a2m.gz
# 1kaeA.t04-thin90.a2m with 161 sequences, total weight= 16.1564 avg weight= 0.10035 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kaeA/info/1kaeA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kaeA/nostruct-align/1kaeA.t04-thin90.a2m.gz, have 215521 columns in 888 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qftA/nostruct-align/1qftA.t04-thin90.a2m.gz
# 1qftA.t04-thin90.a2m with 12 sequences, total weight= 12 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10057 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qftA/info/1qftA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qftA/nostruct-align/1qftA.t04-thin90.a2m.gz, have 215696 columns in 889 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g8aA/nostruct-align/1g8aA.t04-thin90.a2m.gz
# 1g8aA.t04-thin90.a2m with 2416 sequences, total weight= 2416 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.774565 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g8aA/info/1g8aA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g8aA/nostruct-align/1g8aA.t04-thin90.a2m.gz, have 215923 columns in 890 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dtdB/nostruct-align/1dtdB.t04-thin90.a2m.gz
# 1dtdB.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.675221 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dtdB/info/1dtdB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dtdB/nostruct-align/1dtdB.t04-thin90.a2m.gz, have 215984 columns in 891 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1inlA/nostruct-align/1inlA.t04-thin90.a2m.gz
# 1inlA.t04-thin90.a2m with 2389 sequences, total weight= 2389 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.787538 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1inlA/info/1inlA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1inlA/nostruct-align/1inlA.t04-thin90.a2m.gz, have 216269 columns in 892 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q5zA/nostruct-align/1q5zA.t04-thin90.a2m.gz
# 1q5zA.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.588933 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q5zA/info/1q5zA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q5zA/nostruct-align/1q5zA.t04-thin90.a2m.gz, have 216414 columns in 893 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cxqA/nostruct-align/1cxqA.t04-thin90.a2m.gz
# 1cxqA.t04-thin90.a2m with 646 sequences, total weight= 646 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24049 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cxqA/info/1cxqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cxqA/nostruct-align/1cxqA.t04-thin90.a2m.gz, have 216557 columns in 894 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1itxA/nostruct-align/1itxA.t04-thin90.a2m.gz
# 1itxA.t04-thin90.a2m with 710 sequences, total weight= 710 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07312 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1itxA/info/1itxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1itxA/nostruct-align/1itxA.t04-thin90.a2m.gz, have 216976 columns in 895 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o97D/nostruct-align/1o97D.t04-thin90.a2m.gz
# 1o97D.t04-thin90.a2m with 331 sequences, total weight= 47.8327 avg weight= 0.14451 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o97D/info/1o97D.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o97D/nostruct-align/1o97D.t04-thin90.a2m.gz, have 217291 columns in 896 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/4e/4eugA/nostruct-align/4eugA.t04-thin90.a2m.gz
# 4eugA.t04-thin90.a2m with 177 sequences, total weight= 19.3748 avg weight= 0.109462 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/4e/4eugA/info/4eugA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/4e/4eugA/nostruct-align/4eugA.t04-thin90.a2m.gz, have 217516 columns in 897 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pfbA/nostruct-align/1pfbA.t04-thin90.a2m.gz
# 1pfbA.t04-thin90.a2m with 113 sequences, total weight= 21.8091 avg weight= 0.193001 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pfbA/info/1pfbA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pfbA/nostruct-align/1pfbA.t04-thin90.a2m.gz, have 217571 columns in 898 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rjdA/nostruct-align/1rjdA.t04-thin90.a2m.gz
# 1rjdA.t04-thin90.a2m with 189 sequences, total weight= 189 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02202 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rjdA/info/1rjdA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rjdA/nostruct-align/1rjdA.t04-thin90.a2m.gz, have 217899 columns in 899 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhwA/nostruct-align/1vhwA.t04-thin90.a2m.gz
# 1vhwA.t04-thin90.a2m with 564 sequences, total weight= 564 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.995828 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhwA/info/1vhwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vhwA/nostruct-align/1vhwA.t04-thin90.a2m.gz, have 218136 columns in 900 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pwbA/nostruct-align/1pwbA.t04-thin90.a2m.gz
# 1pwbA.t04-thin90.a2m with 1281 sequences, total weight= 1281 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.903321 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pwbA/info/1pwbA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pwbA/nostruct-align/1pwbA.t04-thin90.a2m.gz, have 218287 columns in 901 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1irdB/nostruct-align/1irdB.t04-thin90.a2m.gz
# 1irdB.t04-thin90.a2m with 772 sequences, total weight= 461.937 avg weight= 0.598363 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31044 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1irdB/info/1irdB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1irdB/nostruct-align/1irdB.t04-thin90.a2m.gz, have 218433 columns in 902 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rylA/nostruct-align/1rylA.t04-thin90.a2m.gz
# 1rylA.t04-thin90.a2m with 12 sequences, total weight= 12 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1871 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rylA/info/1rylA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rylA/nostruct-align/1rylA.t04-thin90.a2m.gz, have 218590 columns in 903 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sx5A/nostruct-align/1sx5A.t04-thin90.a2m.gz
# 1sx5A.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.939234 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sx5A/info/1sx5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sx5A/nostruct-align/1sx5A.t04-thin90.a2m.gz, have 218834 columns in 904 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ut1A/nostruct-align/1ut1A.t04-thin90.a2m.gz
# 1ut1A.t04-thin90.a2m with 8 sequences, total weight= 5.30263 avg weight= 0.662828 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ut1A/info/1ut1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ut1A/nostruct-align/1ut1A.t04-thin90.a2m.gz, have 218974 columns in 905 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mr7A/nostruct-align/1mr7A.t04-thin90.a2m.gz
# 1mr7A.t04-thin90.a2m with 1350 sequences, total weight= 1350 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.990222 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mr7A/info/1mr7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mr7A/nostruct-align/1mr7A.t04-thin90.a2m.gz, have 219177 columns in 906 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1twdA/nostruct-align/1twdA.t04-thin90.a2m.gz
# 1twdA.t04-thin90.a2m with 64 sequences, total weight= 19.9047 avg weight= 0.311011 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1twdA/info/1twdA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1twdA/nostruct-align/1twdA.t04-thin90.a2m.gz, have 219411 columns in 907 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2i/2igd/nostruct-align/2igd.t04-thin90.a2m.gz
# 2igd.t04-thin90.a2m with 14 sequences, total weight= 3.33002 avg weight= 0.237859 13 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2i/2igd/info/2igd.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2i/2igd/nostruct-align/2igd.t04-thin90.a2m.gz, have 219472 columns in 908 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lc0A/nostruct-align/1lc0A.t04-thin90.a2m.gz
# 1lc0A.t04-thin90.a2m with 1987 sequences, total weight= 1987 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.811473 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lc0A/info/1lc0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lc0A/nostruct-align/1lc0A.t04-thin90.a2m.gz, have 219762 columns in 909 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1ka1A/nostruct-align/1ka1A.t04-thin90.a2m.gz
# 1ka1A.t04-thin90.a2m with 520 sequences, total weight= 520 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14228 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1ka1A/info/1ka1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1ka1A/nostruct-align/1ka1A.t04-thin90.a2m.gz, have 220116 columns in 910 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ejdA/nostruct-align/1ejdA.t04-thin90.a2m.gz
# 1ejdA.t04-thin90.a2m with 371 sequences, total weight= 82.2145 avg weight= 0.221602 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30206 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ejdA/info/1ejdA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ejdA/nostruct-align/1ejdA.t04-thin90.a2m.gz, have 220535 columns in 911 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r89A/nostruct-align/1r89A.t04-thin90.a2m.gz
# 1r89A.t04-thin90.a2m with 233 sequences, total weight= 233 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.969984 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r89A/info/1r89A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r89A/nostruct-align/1r89A.t04-thin90.a2m.gz, have 220972 columns in 912 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pq1A/nostruct-align/1pq1A.t04-thin90.a2m.gz
# 1pq1A.t04-thin90.a2m with 86 sequences, total weight= 86 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20135 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pq1A/info/1pq1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pq1A/nostruct-align/1pq1A.t04-thin90.a2m.gz, have 221119 columns in 913 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ursA/nostruct-align/1ursA.t04-thin90.a2m.gz
# 1ursA.t04-thin90.a2m with 1420 sequences, total weight= 1420 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.843613 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ursA/info/1ursA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ursA/nostruct-align/1ursA.t04-thin90.a2m.gz, have 221485 columns in 914 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q35A/nostruct-align/1q35A.t04-thin90.a2m.gz
# 1q35A.t04-thin90.a2m with 1436 sequences, total weight= 1436 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.840902 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q35A/info/1q35A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q35A/nostruct-align/1q35A.t04-thin90.a2m.gz, have 221802 columns in 915 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1psrA/nostruct-align/1psrA.t04-thin90.a2m.gz
# 1psrA.t04-thin90.a2m with 106 sequences, total weight= 32.7059 avg weight= 0.308546 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1psrA/info/1psrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1psrA/nostruct-align/1psrA.t04-thin90.a2m.gz, have 221902 columns in 916 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1md6A/nostruct-align/1md6A.t04-thin90.a2m.gz
# 1md6A.t04-thin90.a2m with 89 sequences, total weight= 31.0751 avg weight= 0.349159 43 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1md6A/info/1md6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1md6A/nostruct-align/1md6A.t04-thin90.a2m.gz, have 222056 columns in 917 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1po5A/nostruct-align/1po5A.t04-thin90.a2m.gz
# 1po5A.t04-thin90.a2m with 1949 sequences, total weight= 1949 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13913 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1po5A/info/1po5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1po5A/nostruct-align/1po5A.t04-thin90.a2m.gz, have 222521 columns in 918 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kzfA/nostruct-align/1kzfA.t04-thin90.a2m.gz
# 1kzfA.t04-thin90.a2m with 109 sequences, total weight= 109 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12699 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kzfA/info/1kzfA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kzfA/nostruct-align/1kzfA.t04-thin90.a2m.gz, have 222719 columns in 919 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhh/nostruct-align/1vhh.t04-thin90.a2m.gz
# 1vhh.t04-thin90.a2m with 27 sequences, total weight= 3.93395 avg weight= 0.145702 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhh/info/1vhh.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vhh/nostruct-align/1vhh.t04-thin90.a2m.gz, have 222876 columns in 920 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g2bA/nostruct-align/1g2bA.t04-thin90.a2m.gz
# 1g2bA.t04-thin90.a2m with 57 sequences, total weight= 19.0088 avg weight= 0.333488 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g2bA/info/1g2bA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g2bA/nostruct-align/1g2bA.t04-thin90.a2m.gz, have 222938 columns in 921 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pwgA/nostruct-align/1pwgA.t04-thin90.a2m.gz
# 1pwgA.t04-thin90.a2m with 579 sequences, total weight= 579 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00505 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pwgA/info/1pwgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pwgA/nostruct-align/1pwgA.t04-thin90.a2m.gz, have 223283 columns in 922 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jx6A/nostruct-align/1jx6A.t04-thin90.a2m.gz
# 1jx6A.t04-thin90.a2m with 1468 sequences, total weight= 1468 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.934989 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jx6A/info/1jx6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jx6A/nostruct-align/1jx6A.t04-thin90.a2m.gz, have 223621 columns in 923 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tqgA/nostruct-align/1tqgA.t04-thin90.a2m.gz
# 1tqgA.t04-thin90.a2m with 236 sequences, total weight= 161.355 avg weight= 0.683709 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30295 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tqgA/info/1tqgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tqgA/nostruct-align/1tqgA.t04-thin90.a2m.gz, have 223726 columns in 924 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rvkA/nostruct-align/1rvkA.t04-thin90.a2m.gz
# 1rvkA.t04-thin90.a2m with 766 sequences, total weight= 766 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18903 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rvkA/info/1rvkA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rvkA/nostruct-align/1rvkA.t04-thin90.a2m.gz, have 224107 columns in 925 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f5vA/nostruct-align/1f5vA.t04-thin90.a2m.gz
# 1f5vA.t04-thin90.a2m with 562 sequences, total weight= 562 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12578 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f5vA/info/1f5vA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f5vA/nostruct-align/1f5vA.t04-thin90.a2m.gz, have 224347 columns in 926 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eb6A/nostruct-align/1eb6A.t04-thin90.a2m.gz
# 1eb6A.t04-thin90.a2m with 40 sequences, total weight= 34.7215 avg weight= 0.868038 37 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eb6A/info/1eb6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eb6A/nostruct-align/1eb6A.t04-thin90.a2m.gz, have 224524 columns in 927 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fcqA/nostruct-align/1fcqA.t04-thin90.a2m.gz
# 1fcqA.t04-thin90.a2m with 37 sequences, total weight= 10.8977 avg weight= 0.294533 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fcqA/info/1fcqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fcqA/nostruct-align/1fcqA.t04-thin90.a2m.gz, have 224838 columns in 928 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ifc/nostruct-align/1ifc.t04-thin90.a2m.gz
# 1ifc.t04-thin90.a2m with 152 sequences, total weight= 34.9025 avg weight= 0.229622 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ifc/info/1ifc.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ifc/nostruct-align/1ifc.t04-thin90.a2m.gz, have 224969 columns in 929 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lxjA/nostruct-align/1lxjA.t04-thin90.a2m.gz
# 1lxjA.t04-thin90.a2m with 57 sequences, total weight= 26.8345 avg weight= 0.470781 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lxjA/info/1lxjA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lxjA/nostruct-align/1lxjA.t04-thin90.a2m.gz, have 225073 columns in 930 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54C/nostruct-align/1v54C.t04-thin90.a2m.gz
# 1v54C.t04-thin90.a2m with 627 sequences, total weight= 71.3304 avg weight= 0.113765 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30072 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54C/info/1v54C.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v54C/nostruct-align/1v54C.t04-thin90.a2m.gz, have 225332 columns in 931 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pbyB/nostruct-align/1pbyB.t04-thin90.a2m.gz
# 1pbyB.t04-thin90.a2m with 2219 sequences, total weight= 2219 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.864772 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pbyB/info/1pbyB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pbyB/nostruct-align/1pbyB.t04-thin90.a2m.gz, have 225669 columns in 932 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b3aA/nostruct-align/1b3aA.t04-thin90.a2m.gz
# 1b3aA.t04-thin90.a2m with 218 sequences, total weight= 55.1249 avg weight= 0.252867 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30117 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b3aA/info/1b3aA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1b3aA/nostruct-align/1b3aA.t04-thin90.a2m.gz, have 225736 columns in 933 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vl2A/nostruct-align/1vl2A.t04-thin90.a2m.gz
# 1vl2A.t04-thin90.a2m with 1105 sequences, total weight= 1105 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10809 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vl2A/info/1vl2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vl2A/nostruct-align/1vl2A.t04-thin90.a2m.gz, have 226134 columns in 934 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pb7A/nostruct-align/1pb7A.t04-thin90.a2m.gz
# 1pb7A.t04-thin90.a2m with 1344 sequences, total weight= 1344 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.93162 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pb7A/info/1pb7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pb7A/nostruct-align/1pb7A.t04-thin90.a2m.gz, have 226415 columns in 935 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dqzA/nostruct-align/1dqzA.t04-thin90.a2m.gz
# 1dqzA.t04-thin90.a2m with 2212 sequences, total weight= 2212 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.797172 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dqzA/info/1dqzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dqzA/nostruct-align/1dqzA.t04-thin90.a2m.gz, have 226695 columns in 936 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lyvA/nostruct-align/1lyvA.t04-thin90.a2m.gz
# 1lyvA.t04-thin90.a2m with 668 sequences, total weight= 668 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05574 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lyvA/info/1lyvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lyvA/nostruct-align/1lyvA.t04-thin90.a2m.gz, have 226978 columns in 937 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lb3A/nostruct-align/1lb3A.t04-thin90.a2m.gz
# 1lb3A.t04-thin90.a2m with 306 sequences, total weight= 306 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29622 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lb3A/info/1lb3A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lb3A/nostruct-align/1lb3A.t04-thin90.a2m.gz, have 227145 columns in 938 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b8zA/nostruct-align/1b8zA.t04-thin90.a2m.gz
# 1b8zA.t04-thin90.a2m with 234 sequences, total weight= 13.7285 avg weight= 0.0586687 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b8zA/info/1b8zA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1b8zA/nostruct-align/1b8zA.t04-thin90.a2m.gz, have 227212 columns in 939 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rkuA/nostruct-align/1rkuA.t04-thin90.a2m.gz
# 1rkuA.t04-thin90.a2m with 2077 sequences, total weight= 2077 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00965 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rkuA/info/1rkuA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rkuA/nostruct-align/1rkuA.t04-thin90.a2m.gz, have 227418 columns in 940 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vjuA/nostruct-align/1vjuA.t04-thin90.a2m.gz
# 1vjuA.t04-thin90.a2m with 95 sequences, total weight= 6.97796 avg weight= 0.0734523 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vjuA/info/1vjuA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vjuA/nostruct-align/1vjuA.t04-thin90.a2m.gz, have 227709 columns in 941 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ogwA/nostruct-align/1ogwA.t04-thin90.a2m.gz
# 1ogwA.t04-thin90.a2m with 338 sequences, total weight= 142.507 avg weight= 0.421618 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30464 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ogwA/info/1ogwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ogwA/nostruct-align/1ogwA.t04-thin90.a2m.gz, have 227785 columns in 942 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r1tA/nostruct-align/1r1tA.t04-thin90.a2m.gz
# 1r1tA.t04-thin90.a2m with 839 sequences, total weight= 839 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0889 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r1tA/info/1r1tA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r1tA/nostruct-align/1r1tA.t04-thin90.a2m.gz, have 227883 columns in 943 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nnhA/nostruct-align/1nnhA.t04-thin90.a2m.gz
# 1nnhA.t04-thin90.a2m with 950 sequences, total weight= 950 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14285 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nnhA/info/1nnhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nnhA/nostruct-align/1nnhA.t04-thin90.a2m.gz, have 228176 columns in 944 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uteA/nostruct-align/1uteA.t04-thin90.a2m.gz
# 1uteA.t04-thin90.a2m with 1505 sequences, total weight= 1505 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.662665 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uteA/info/1uteA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uteA/nostruct-align/1uteA.t04-thin90.a2m.gz, have 228478 columns in 945 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1ks8A/nostruct-align/1ks8A.t04-thin90.a2m.gz
# 1ks8A.t04-thin90.a2m with 225 sequences, total weight= 60.7173 avg weight= 0.269855 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30033 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1ks8A/info/1ks8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1ks8A/nostruct-align/1ks8A.t04-thin90.a2m.gz, have 228911 columns in 946 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vkiA/nostruct-align/1vkiA.t04-thin90.a2m.gz
# 1vkiA.t04-thin90.a2m with 244 sequences, total weight= 244 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22947 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vkiA/info/1vkiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vkiA/nostruct-align/1vkiA.t04-thin90.a2m.gz, have 229076 columns in 947 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ou8A/nostruct-align/1ou8A.t04-thin90.a2m.gz
# 1ou8A.t04-thin90.a2m with 33 sequences, total weight= 7.85664 avg weight= 0.23808 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ou8A/info/1ou8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ou8A/nostruct-align/1ou8A.t04-thin90.a2m.gz, have 229182 columns in 948 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1ssxA/nostruct-align/1ssxA.t04-thin90.a2m.gz
# 1ssxA.t04-thin90.a2m with 1889 sequences, total weight= 500.054 avg weight= 0.264719 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32614 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1ssxA/info/1ssxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1ssxA/nostruct-align/1ssxA.t04-thin90.a2m.gz, have 229380 columns in 949 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j6oA/nostruct-align/1j6oA.t04-thin90.a2m.gz
# 1j6oA.t04-thin90.a2m with 560 sequences, total weight= 560 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.970925 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j6oA/info/1j6oA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j6oA/nostruct-align/1j6oA.t04-thin90.a2m.gz, have 229640 columns in 950 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fp2A/nostruct-align/1fp2A.t04-thin90.a2m.gz
# 1fp2A.t04-thin90.a2m with 2447 sequences, total weight= 2447 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.774629 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fp2A/info/1fp2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fp2A/nostruct-align/1fp2A.t04-thin90.a2m.gz, have 229985 columns in 951 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h4aX/nostruct-align/1h4aX.t04-thin90.a2m.gz
# 1h4aX.t04-thin90.a2m with 108 sequences, total weight= 33.9386 avg weight= 0.314246 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h4aX/info/1h4aX.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h4aX/nostruct-align/1h4aX.t04-thin90.a2m.gz, have 230158 columns in 952 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oywA/nostruct-align/1oywA.t04-thin90.a2m.gz
# 1oywA.t04-thin90.a2m with 2024 sequences, total weight= 2024 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06359 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oywA/info/1oywA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oywA/nostruct-align/1oywA.t04-thin90.a2m.gz, have 230674 columns in 953 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mpgA/nostruct-align/1mpgA.t04-thin90.a2m.gz
# 1mpgA.t04-thin90.a2m with 533 sequences, total weight= 533 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04866 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mpgA/info/1mpgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mpgA/nostruct-align/1mpgA.t04-thin90.a2m.gz, have 230956 columns in 954 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qwgA/nostruct-align/1qwgA.t04-thin90.a2m.gz
# 1qwgA.t04-thin90.a2m with 17 sequences, total weight= 11.4766 avg weight= 0.675096 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qwgA/info/1qwgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qwgA/nostruct-align/1qwgA.t04-thin90.a2m.gz, have 231207 columns in 955 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v9fA/nostruct-align/1v9fA.t04-thin90.a2m.gz
# 1v9fA.t04-thin90.a2m with 768 sequences, total weight= 768 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17862 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v9fA/info/1v9fA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v9fA/nostruct-align/1v9fA.t04-thin90.a2m.gz, have 231457 columns in 956 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f7lA/nostruct-align/1f7lA.t04-thin90.a2m.gz
# 1f7lA.t04-thin90.a2m with 238 sequences, total weight= 238 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16395 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f7lA/info/1f7lA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f7lA/nostruct-align/1f7lA.t04-thin90.a2m.gz, have 231575 columns in 957 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ey4A/nostruct-align/1ey4A.t04-thin90.a2m.gz
# 1ey4A.t04-thin90.a2m with 275 sequences, total weight= 275 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14466 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ey4A/info/1ey4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ey4A/nostruct-align/1ey4A.t04-thin90.a2m.gz, have 231711 columns in 958 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1os6A/nostruct-align/1os6A.t04-thin90.a2m.gz
# 1os6A.t04-thin90.a2m with 44 sequences, total weight= 29.7214 avg weight= 0.675485 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1os6A/info/1os6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1os6A/nostruct-align/1os6A.t04-thin90.a2m.gz, have 231782 columns in 959 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gvzA/nostruct-align/1gvzA.t04-thin90.a2m.gz
# 1gvzA.t04-thin90.a2m with 1723 sequences, total weight= 943.185 avg weight= 0.547409 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31564 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gvzA/info/1gvzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gvzA/nostruct-align/1gvzA.t04-thin90.a2m.gz, have 232019 columns in 960 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i1wA/nostruct-align/1i1wA.t04-thin90.a2m.gz
# 1i1wA.t04-thin90.a2m with 291 sequences, total weight= 291 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0439 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i1wA/info/1i1wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i1wA/nostruct-align/1i1wA.t04-thin90.a2m.gz, have 232322 columns in 961 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1ten/nostruct-align/1ten.t04-thin90.a2m.gz
# 1ten.t04-thin90.a2m with 2178 sequences, total weight= 2178 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06907 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1ten/info/1ten.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1ten/nostruct-align/1ten.t04-thin90.a2m.gz, have 232411 columns in 962 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gvfA/nostruct-align/1gvfA.t04-thin90.a2m.gz
# 1gvfA.t04-thin90.a2m with 203 sequences, total weight= 24.2822 avg weight= 0.119617 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gvfA/info/1gvfA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gvfA/nostruct-align/1gvfA.t04-thin90.a2m.gz, have 232684 columns in 963 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mh1/nostruct-align/1mh1.t04-thin90.a2m.gz
# 1mh1.t04-thin90.a2m with 1290 sequences, total weight= 1290 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20841 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mh1/info/1mh1.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mh1/nostruct-align/1mh1.t04-thin90.a2m.gz, have 232867 columns in 964 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gtkA/nostruct-align/1gtkA.t04-thin90.a2m.gz
# 1gtkA.t04-thin90.a2m with 164 sequences, total weight= 19.2021 avg weight= 0.117086 45 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gtkA/info/1gtkA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gtkA/nostruct-align/1gtkA.t04-thin90.a2m.gz, have 233161 columns in 965 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pvmA/nostruct-align/1pvmA.t04-thin90.a2m.gz
# 1pvmA.t04-thin90.a2m with 1901 sequences, total weight= 1901 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.948644 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pvmA/info/1pvmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pvmA/nostruct-align/1pvmA.t04-thin90.a2m.gz, have 233339 columns in 966 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hbnA/nostruct-align/1hbnA.t04-thin90.a2m.gz
# 1hbnA.t04-thin90.a2m with 33 sequences, total weight= 4.61379 avg weight= 0.139812 13 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hbnA/info/1hbnA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hbnA/nostruct-align/1hbnA.t04-thin90.a2m.gz, have 233886 columns in 967 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1deuA/nostruct-align/1deuA.t04-thin90.a2m.gz
# 1deuA.t04-thin90.a2m with 857 sequences, total weight= 857 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22063 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1deuA/info/1deuA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1deuA/nostruct-align/1deuA.t04-thin90.a2m.gz, have 234161 columns in 968 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i9zA/nostruct-align/1i9zA.t04-thin90.a2m.gz
# 1i9zA.t04-thin90.a2m with 634 sequences, total weight= 634 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.919602 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i9zA/info/1i9zA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i9zA/nostruct-align/1i9zA.t04-thin90.a2m.gz, have 234497 columns in 969 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eexB/nostruct-align/1eexB.t04-thin90.a2m.gz
# 1eexB.t04-thin90.a2m with 18 sequences, total weight= 10.2206 avg weight= 0.567811 20 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eexB/info/1eexB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eexB/nostruct-align/1eexB.t04-thin90.a2m.gz, have 234675 columns in 970 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h16A/nostruct-align/1h16A.t04-thin90.a2m.gz
# 1h16A.t04-thin90.a2m with 101 sequences, total weight= 50.6336 avg weight= 0.501323 42 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h16A/info/1h16A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h16A/nostruct-align/1h16A.t04-thin90.a2m.gz, have 235434 columns in 971 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m0kA/nostruct-align/1m0kA.t04-thin90.a2m.gz
# 1m0kA.t04-thin90.a2m with 54 sequences, total weight= 37.8745 avg weight= 0.701379 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m0kA/info/1m0kA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m0kA/nostruct-align/1m0kA.t04-thin90.a2m.gz, have 235656 columns in 972 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wkqA/nostruct-align/1wkqA.t04-thin90.a2m.gz
# 1wkqA.t04-thin90.a2m with 688 sequences, total weight= 688 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13312 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wkqA/info/1wkqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wkqA/nostruct-align/1wkqA.t04-thin90.a2m.gz, have 235814 columns in 973 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eexG/nostruct-align/1eexG.t04-thin90.a2m.gz
# 1eexG.t04-thin90.a2m with 11 sequences, total weight= 3.75644 avg weight= 0.341494 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eexG/info/1eexG.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eexG/nostruct-align/1eexG.t04-thin90.a2m.gz, have 235951 columns in 974 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhtA/nostruct-align/1vhtA.t04-thin90.a2m.gz
# 1vhtA.t04-thin90.a2m with 2039 sequences, total weight= 2039 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.830622 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhtA/info/1vhtA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vhtA/nostruct-align/1vhtA.t04-thin90.a2m.gz, have 236159 columns in 975 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nrzA/nostruct-align/1nrzA.t04-thin90.a2m.gz
# 1nrzA.t04-thin90.a2m with 93 sequences, total weight= 24.4293 avg weight= 0.262681 43 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nrzA/info/1nrzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nrzA/nostruct-align/1nrzA.t04-thin90.a2m.gz, have 236322 columns in 976 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m6pA/nostruct-align/1m6pA.t04-thin90.a2m.gz
# 1m6pA.t04-thin90.a2m with 212 sequences, total weight= 105.652 avg weight= 0.498357 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30125 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m6pA/info/1m6pA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m6pA/nostruct-align/1m6pA.t04-thin90.a2m.gz, have 236468 columns in 977 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kfcA/nostruct-align/1kfcA.t04-thin90.a2m.gz
# 1kfcA.t04-thin90.a2m with 594 sequences, total weight= 594 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07383 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kfcA/info/1kfcA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kfcA/nostruct-align/1kfcA.t04-thin90.a2m.gz, have 236722 columns in 978 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1epxA/nostruct-align/1epxA.t04-thin90.a2m.gz
# 1epxA.t04-thin90.a2m with 174 sequences, total weight= 14.2376 avg weight= 0.0818251 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1epxA/info/1epxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1epxA/nostruct-align/1epxA.t04-thin90.a2m.gz, have 237079 columns in 979 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i2tA/nostruct-align/1i2tA.t04-thin90.a2m.gz
# 1i2tA.t04-thin90.a2m with 51 sequences, total weight= 6.96158 avg weight= 0.136502 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i2tA/info/1i2tA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i2tA/nostruct-align/1i2tA.t04-thin90.a2m.gz, have 237140 columns in 980 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nnlA/nostruct-align/1nnlA.t04-thin90.a2m.gz
# 1nnlA.t04-thin90.a2m with 1989 sequences, total weight= 1989 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04304 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nnlA/info/1nnlA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nnlA/nostruct-align/1nnlA.t04-thin90.a2m.gz, have 237345 columns in 981 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54G/nostruct-align/1v54G.t04-thin90.a2m.gz
# 1v54G.t04-thin90.a2m with 29 sequences, total weight= 10.2826 avg weight= 0.354573 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54G/info/1v54G.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v54G/nostruct-align/1v54G.t04-thin90.a2m.gz, have 237429 columns in 982 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hw1A/nostruct-align/1hw1A.t04-thin90.a2m.gz
# 1hw1A.t04-thin90.a2m with 1756 sequences, total weight= 1756 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.866943 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hw1A/info/1hw1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hw1A/nostruct-align/1hw1A.t04-thin90.a2m.gz, have 237655 columns in 983 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1al3/nostruct-align/1al3.t04-thin90.a2m.gz
# 1al3.t04-thin90.a2m with 2381 sequences, total weight= 2381 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02378 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1al3/info/1al3.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1al3/nostruct-align/1al3.t04-thin90.a2m.gz, have 237892 columns in 984 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w2yA/nostruct-align/1w2yA.t04-thin90.a2m.gz
# 1w2yA.t04-thin90.a2m with 30 sequences, total weight= 28.6809 avg weight= 0.95603 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w2yA/info/1w2yA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w2yA/nostruct-align/1w2yA.t04-thin90.a2m.gz, have 238118 columns in 985 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tx4A/nostruct-align/1tx4A.t04-thin90.a2m.gz
# 1tx4A.t04-thin90.a2m with 355 sequences, total weight= 355 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14087 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tx4A/info/1tx4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tx4A/nostruct-align/1tx4A.t04-thin90.a2m.gz, have 238314 columns in 986 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fj2A/nostruct-align/1fj2A.t04-thin90.a2m.gz
# 1fj2A.t04-thin90.a2m with 2297 sequences, total weight= 2297 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.835768 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fj2A/info/1fj2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fj2A/nostruct-align/1fj2A.t04-thin90.a2m.gz, have 238543 columns in 987 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w2wA/nostruct-align/1w2wA.t04-thin90.a2m.gz
# 1w2wA.t04-thin90.a2m with 101 sequences, total weight= 23.7671 avg weight= 0.235318 45 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w2wA/info/1w2wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w2wA/nostruct-align/1w2wA.t04-thin90.a2m.gz, have 238754 columns in 988 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r0mA/nostruct-align/1r0mA.t04-thin90.a2m.gz
# 1r0mA.t04-thin90.a2m with 840 sequences, total weight= 840 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20066 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r0mA/info/1r0mA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r0mA/nostruct-align/1r0mA.t04-thin90.a2m.gz, have 239114 columns in 989 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c4qA/nostruct-align/1c4qA.t04-thin90.a2m.gz
# 1c4qA.t04-thin90.a2m with 10 sequences, total weight= 3.04854 avg weight= 0.304854 10 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c4qA/info/1c4qA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1c4qA/nostruct-align/1c4qA.t04-thin90.a2m.gz, have 239183 columns in 990 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sxrA/nostruct-align/1sxrA.t04-thin90.a2m.gz
# 1sxrA.t04-thin90.a2m with 233 sequences, total weight= 233 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26349 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sxrA/info/1sxrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sxrA/nostruct-align/1sxrA.t04-thin90.a2m.gz, have 239356 columns in 991 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1utg/nostruct-align/1utg.t04-thin90.a2m.gz
# 1utg.t04-thin90.a2m with 10 sequences, total weight= 3.61473 avg weight= 0.361473 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1utg/info/1utg.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1utg/nostruct-align/1utg.t04-thin90.a2m.gz, have 239426 columns in 992 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1npk/nostruct-align/1npk.t04-thin90.a2m.gz
# 1npk.t04-thin90.a2m with 271 sequences, total weight= 39.091 avg weight= 0.144247 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1npk/info/1npk.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1npk/nostruct-align/1npk.t04-thin90.a2m.gz, have 239576 columns in 993 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n62A/nostruct-align/1n62A.t04-thin90.a2m.gz
# 1n62A.t04-thin90.a2m with 439 sequences, total weight= 159.593 avg weight= 0.363537 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30701 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n62A/info/1n62A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n62A/nostruct-align/1n62A.t04-thin90.a2m.gz, have 239737 columns in 994 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mg4A/nostruct-align/1mg4A.t04-thin90.a2m.gz
# 1mg4A.t04-thin90.a2m with 50 sequences, total weight= 31.5421 avg weight= 0.630842 42 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mg4A/info/1mg4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mg4A/nostruct-align/1mg4A.t04-thin90.a2m.gz, have 239838 columns in 995 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1llfA/nostruct-align/1llfA.t04-thin90.a2m.gz
# 1llfA.t04-thin90.a2m with 1718 sequences, total weight= 1718 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.96408 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1llfA/info/1llfA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1llfA/nostruct-align/1llfA.t04-thin90.a2m.gz, have 240372 columns in 996 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t1vA/nostruct-align/1t1vA.t04-thin90.a2m.gz
# 1t1vA.t04-thin90.a2m with 337 sequences, total weight= 131.334 avg weight= 0.389716 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30385 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t1vA/info/1t1vA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t1vA/nostruct-align/1t1vA.t04-thin90.a2m.gz, have 240465 columns in 997 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j0pA/nostruct-align/1j0pA.t04-thin90.a2m.gz
# 1j0pA.t04-thin90.a2m with 52 sequences, total weight= 52 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25424 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j0pA/info/1j0pA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j0pA/nostruct-align/1j0pA.t04-thin90.a2m.gz, have 240573 columns in 998 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1omrA/nostruct-align/1omrA.t04-thin90.a2m.gz
# 1omrA.t04-thin90.a2m with 1462 sequences, total weight= 1462 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.876105 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1omrA/info/1omrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1omrA/nostruct-align/1omrA.t04-thin90.a2m.gz, have 240774 columns in 999 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f60A/nostruct-align/1f60A.t04-thin90.a2m.gz
# 1f60A.t04-thin90.a2m with 616 sequences, total weight= 20.9673 avg weight= 0.0340379 43 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f60A/info/1f60A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f60A/nostruct-align/1f60A.t04-thin90.a2m.gz, have 241214 columns in 1000 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gvp/nostruct-align/1gvp.t04-thin90.a2m.gz
# 1gvp.t04-thin90.a2m with 9 sequences, total weight= 4.74124 avg weight= 0.526805 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gvp/info/1gvp.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gvp/nostruct-align/1gvp.t04-thin90.a2m.gz, have 241301 columns in 1001 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1knmA/nostruct-align/1knmA.t04-thin90.a2m.gz
# 1knmA.t04-thin90.a2m with 263 sequences, total weight= 263 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0694 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1knmA/info/1knmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1knmA/nostruct-align/1knmA.t04-thin90.a2m.gz, have 241430 columns in 1002 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t2wA/nostruct-align/1t2wA.t04-thin90.a2m.gz
# 1t2wA.t04-thin90.a2m with 145 sequences, total weight= 126.415 avg weight= 0.871825 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30045 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t2wA/info/1t2wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t2wA/nostruct-align/1t2wA.t04-thin90.a2m.gz, have 241575 columns in 1003 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o9gA/nostruct-align/1o9gA.t04-thin90.a2m.gz
# 1o9gA.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.624727 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o9gA/info/1o9gA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o9gA/nostruct-align/1o9gA.t04-thin90.a2m.gz, have 241824 columns in 1004 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fjjA/nostruct-align/1fjjA.t04-thin90.a2m.gz
# 1fjjA.t04-thin90.a2m with 212 sequences, total weight= 212 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23353 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fjjA/info/1fjjA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fjjA/nostruct-align/1fjjA.t04-thin90.a2m.gz, have 241983 columns in 1005 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1ccwB/nostruct-align/1ccwB.t04-thin90.a2m.gz
# 1ccwB.t04-thin90.a2m with 120 sequences, total weight= 57.5132 avg weight= 0.479276 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1ccwB/info/1ccwB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1ccwB/nostruct-align/1ccwB.t04-thin90.a2m.gz, have 242466 columns in 1006 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p5dX/nostruct-align/1p5dX.t04-thin90.a2m.gz
# 1p5dX.t04-thin90.a2m with 615 sequences, total weight= 615 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26117 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p5dX/info/1p5dX.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p5dX/nostruct-align/1p5dX.t04-thin90.a2m.gz, have 242921 columns in 1007 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1josA/nostruct-align/1josA.t04-thin90.a2m.gz
# 1josA.t04-thin90.a2m with 141 sequences, total weight= 36.7503 avg weight= 0.26064 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1josA/info/1josA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1josA/nostruct-align/1josA.t04-thin90.a2m.gz, have 243021 columns in 1008 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kpf/nostruct-align/1kpf.t04-thin90.a2m.gz
# 1kpf.t04-thin90.a2m with 408 sequences, total weight= 408 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21343 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kpf/info/1kpf.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kpf/nostruct-align/1kpf.t04-thin90.a2m.gz, have 243132 columns in 1009 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eg2A/nostruct-align/1eg2A.t04-thin90.a2m.gz
# 1eg2A.t04-thin90.a2m with 386 sequences, total weight= 386 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.939942 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eg2A/info/1eg2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eg2A/nostruct-align/1eg2A.t04-thin90.a2m.gz, have 243402 columns in 1010 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ucsA/nostruct-align/1ucsA.t04-thin90.a2m.gz
# 1ucsA.t04-thin90.a2m with 9 sequences, total weight= 2.9458 avg weight= 0.327311 10 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ucsA/info/1ucsA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ucsA/nostruct-align/1ucsA.t04-thin90.a2m.gz, have 243466 columns in 1011 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sdiA/nostruct-align/1sdiA.t04-thin90.a2m.gz
# 1sdiA.t04-thin90.a2m with 28 sequences, total weight= 9.45875 avg weight= 0.337813 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sdiA/info/1sdiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sdiA/nostruct-align/1sdiA.t04-thin90.a2m.gz, have 243679 columns in 1012 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1obdA/nostruct-align/1obdA.t04-thin90.a2m.gz
# 1obdA.t04-thin90.a2m with 176 sequences, total weight= 41.0364 avg weight= 0.233161 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1obdA/info/1obdA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1obdA/nostruct-align/1obdA.t04-thin90.a2m.gz, have 243977 columns in 1013 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rx0A/nostruct-align/1rx0A.t04-thin90.a2m.gz
# 1rx0A.t04-thin90.a2m with 1519 sequences, total weight= 1519 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11001 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rx0A/info/1rx0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rx0A/nostruct-align/1rx0A.t04-thin90.a2m.gz, have 244361 columns in 1014 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p99A/nostruct-align/1p99A.t04-thin90.a2m.gz
# 1p99A.t04-thin90.a2m with 554 sequences, total weight= 554 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06749 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p99A/info/1p99A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p99A/nostruct-align/1p99A.t04-thin90.a2m.gz, have 244616 columns in 1015 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2l/2lisA/nostruct-align/2lisA.t04-thin90.a2m.gz
# 2lisA.t04-thin90.a2m with 28 sequences, total weight= 11.0021 avg weight= 0.392932 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2l/2lisA/info/2lisA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2l/2lisA/nostruct-align/2lisA.t04-thin90.a2m.gz, have 244747 columns in 1016 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nvmA/nostruct-align/1nvmA.t04-thin90.a2m.gz
# 1nvmA.t04-thin90.a2m with 531 sequences, total weight= 503.76 avg weight= 0.948701 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30093 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nvmA/info/1nvmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nvmA/nostruct-align/1nvmA.t04-thin90.a2m.gz, have 245087 columns in 1017 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1egwA/nostruct-align/1egwA.t04-thin90.a2m.gz
# 1egwA.t04-thin90.a2m with 414 sequences, total weight= 17.6372 avg weight= 0.0426018 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1egwA/info/1egwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1egwA/nostruct-align/1egwA.t04-thin90.a2m.gz, have 245158 columns in 1018 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jmkC/nostruct-align/1jmkC.t04-thin90.a2m.gz
# 1jmkC.t04-thin90.a2m with 2358 sequences, total weight= 2358 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.871629 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jmkC/info/1jmkC.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jmkC/nostruct-align/1jmkC.t04-thin90.a2m.gz, have 245380 columns in 1019 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1duvG/nostruct-align/1duvG.t04-thin90.a2m.gz
# 1duvG.t04-thin90.a2m with 416 sequences, total weight= 45.1396 avg weight= 0.108509 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1duvG/info/1duvG.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1duvG/nostruct-align/1duvG.t04-thin90.a2m.gz, have 245713 columns in 1020 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rocA/nostruct-align/1rocA.t04-thin90.a2m.gz
# 1rocA.t04-thin90.a2m with 31 sequences, total weight= 8.349 avg weight= 0.269323 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rocA/info/1rocA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rocA/nostruct-align/1rocA.t04-thin90.a2m.gz, have 245868 columns in 1021 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i71A/nostruct-align/1i71A.t04-thin90.a2m.gz
# 1i71A.t04-thin90.a2m with 215 sequences, total weight= 23.945 avg weight= 0.111372 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i71A/info/1i71A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i71A/nostruct-align/1i71A.t04-thin90.a2m.gz, have 245951 columns in 1022 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1umgA/nostruct-align/1umgA.t04-thin90.a2m.gz
# 1umgA.t04-thin90.a2m with 21 sequences, total weight= 3.74235 avg weight= 0.178207 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1umgA/info/1umgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1umgA/nostruct-align/1umgA.t04-thin90.a2m.gz, have 246310 columns in 1023 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h5uA/nostruct-align/1h5uA.t04-thin90.a2m.gz
# 1h5uA.t04-thin90.a2m with 291 sequences, total weight= 89.5773 avg weight= 0.307826 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30058 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h5uA/info/1h5uA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h5uA/nostruct-align/1h5uA.t04-thin90.a2m.gz, have 247121 columns in 1024 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gkpA/nostruct-align/1gkpA.t04-thin90.a2m.gz
# 1gkpA.t04-thin90.a2m with 1316 sequences, total weight= 1316 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.882228 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gkpA/info/1gkpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gkpA/nostruct-align/1gkpA.t04-thin90.a2m.gz, have 247579 columns in 1025 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pa7A/nostruct-align/1pa7A.t04-thin90.a2m.gz
# 1pa7A.t04-thin90.a2m with 46 sequences, total weight= 12.6428 avg weight= 0.274844 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pa7A/info/1pa7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pa7A/nostruct-align/1pa7A.t04-thin90.a2m.gz, have 247709 columns in 1026 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gnlA/nostruct-align/1gnlA.t04-thin90.a2m.gz
# 1gnlA.t04-thin90.a2m with 85 sequences, total weight= 46.6975 avg weight= 0.549383 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gnlA/info/1gnlA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gnlA/nostruct-align/1gnlA.t04-thin90.a2m.gz, have 248252 columns in 1027 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bteA/nostruct-align/1bteA.t04-thin90.a2m.gz
# 1bteA.t04-thin90.a2m with 20 sequences, total weight= 14.4493 avg weight= 0.722464 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bteA/info/1bteA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bteA/nostruct-align/1bteA.t04-thin90.a2m.gz, have 248344 columns in 1028 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gu2A/nostruct-align/1gu2A.t04-thin90.a2m.gz
# 1gu2A.t04-thin90.a2m with 10 sequences, total weight= 7.5879 avg weight= 0.75879 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gu2A/info/1gu2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gu2A/nostruct-align/1gu2A.t04-thin90.a2m.gz, have 248468 columns in 1029 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l1lA/nostruct-align/1l1lA.t04-thin90.a2m.gz
# 1l1lA.t04-thin90.a2m with 304 sequences, total weight= 304 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21258 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l1lA/info/1l1lA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l1lA/nostruct-align/1l1lA.t04-thin90.a2m.gz, have 249185 columns in 1030 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e2wA/nostruct-align/1e2wA.t04-thin90.a2m.gz
# 1e2wA.t04-thin90.a2m with 40 sequences, total weight= 4.30209 avg weight= 0.107552 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e2wA/info/1e2wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e2wA/nostruct-align/1e2wA.t04-thin90.a2m.gz, have 249436 columns in 1031 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kt6A/nostruct-align/1kt6A.t04-thin90.a2m.gz
# 1kt6A.t04-thin90.a2m with 269 sequences, total weight= 269 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.939397 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kt6A/info/1kt6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kt6A/nostruct-align/1kt6A.t04-thin90.a2m.gz, have 249611 columns in 1032 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2m/2mhr/nostruct-align/2mhr.t04-thin90.a2m.gz
# 2mhr.t04-thin90.a2m with 117 sequences, total weight= 117 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25483 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2m/2mhr/info/2mhr.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2m/2mhr/nostruct-align/2mhr.t04-thin90.a2m.gz, have 249729 columns in 1033 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vjoA/nostruct-align/1vjoA.t04-thin90.a2m.gz
# 1vjoA.t04-thin90.a2m with 2180 sequences, total weight= 2180 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.958628 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vjoA/info/1vjoA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vjoA/nostruct-align/1vjoA.t04-thin90.a2m.gz, have 250106 columns in 1034 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mqvA/nostruct-align/1mqvA.t04-thin90.a2m.gz
# 1mqvA.t04-thin90.a2m with 44 sequences, total weight= 40.2064 avg weight= 0.913781 37 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mqvA/info/1mqvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mqvA/nostruct-align/1mqvA.t04-thin90.a2m.gz, have 250229 columns in 1035 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1io0A/nostruct-align/1io0A.t04-thin90.a2m.gz
# 1io0A.t04-thin90.a2m with 36 sequences, total weight= 16.4896 avg weight= 0.458045 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1io0A/info/1io0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1io0A/nostruct-align/1io0A.t04-thin90.a2m.gz, have 250395 columns in 1036 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i40A/nostruct-align/1i40A.t04-thin90.a2m.gz
# 1i40A.t04-thin90.a2m with 185 sequences, total weight= 27.5971 avg weight= 0.149174 45 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i40A/info/1i40A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i40A/nostruct-align/1i40A.t04-thin90.a2m.gz, have 250570 columns in 1037 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t0bA/nostruct-align/1t0bA.t04-thin90.a2m.gz
# 1t0bA.t04-thin90.a2m with 65 sequences, total weight= 65 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08729 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t0bA/info/1t0bA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t0bA/nostruct-align/1t0bA.t04-thin90.a2m.gz, have 250810 columns in 1038 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uxaA/nostruct-align/1uxaA.t04-thin90.a2m.gz
# 1uxaA.t04-thin90.a2m with 36 sequences, total weight= 16.1652 avg weight= 0.449034 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uxaA/info/1uxaA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uxaA/nostruct-align/1uxaA.t04-thin90.a2m.gz, have 250995 columns in 1039 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cjwA/nostruct-align/1cjwA.t04-thin90.a2m.gz
# 1cjwA.t04-thin90.a2m with 2442 sequences, total weight= 2442 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.812045 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cjwA/info/1cjwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cjwA/nostruct-align/1cjwA.t04-thin90.a2m.gz, have 251161 columns in 1040 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/8a/8abp/nostruct-align/8abp.t04-thin90.a2m.gz
# 8abp.t04-thin90.a2m with 1316 sequences, total weight= 1316 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.974163 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/8a/8abp/info/8abp.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/8a/8abp/nostruct-align/8abp.t04-thin90.a2m.gz, have 251466 columns in 1041 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bopA/nostruct-align/2bopA.t04-thin90.a2m.gz
# 2bopA.t04-thin90.a2m with 108 sequences, total weight= 14.5827 avg weight= 0.135025 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bopA/info/2bopA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2b/2bopA/nostruct-align/2bopA.t04-thin90.a2m.gz, have 251551 columns in 1042 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qmgA/nostruct-align/1qmgA.t04-thin90.a2m.gz
# 1qmgA.t04-thin90.a2m with 1454 sequences, total weight= 1454 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0794 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qmgA/info/1qmgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qmgA/nostruct-align/1qmgA.t04-thin90.a2m.gz, have 252065 columns in 1043 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jovA/nostruct-align/1jovA.t04-thin90.a2m.gz
# 1jovA.t04-thin90.a2m with 285 sequences, total weight= 285 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11737 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jovA/info/1jovA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jovA/nostruct-align/1jovA.t04-thin90.a2m.gz, have 252334 columns in 1044 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e85A/nostruct-align/1e85A.t04-thin90.a2m.gz
# 1e85A.t04-thin90.a2m with 43 sequences, total weight= 43 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27597 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e85A/info/1e85A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e85A/nostruct-align/1e85A.t04-thin90.a2m.gz, have 252459 columns in 1045 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hqkA/nostruct-align/1hqkA.t04-thin90.a2m.gz
# 1hqkA.t04-thin90.a2m with 173 sequences, total weight= 24.363 avg weight= 0.140827 45 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hqkA/info/1hqkA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hqkA/nostruct-align/1hqkA.t04-thin90.a2m.gz, have 252613 columns in 1046 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c75A/nostruct-align/1c75A.t04-thin90.a2m.gz
# 1c75A.t04-thin90.a2m with 503 sequences, total weight= 243.648 avg weight= 0.48439 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31015 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c75A/info/1c75A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1c75A/nostruct-align/1c75A.t04-thin90.a2m.gz, have 252684 columns in 1047 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dg6A/nostruct-align/1dg6A.t04-thin90.a2m.gz
# 1dg6A.t04-thin90.a2m with 93 sequences, total weight= 56.8786 avg weight= 0.611598 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dg6A/info/1dg6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dg6A/nostruct-align/1dg6A.t04-thin90.a2m.gz, have 252833 columns in 1048 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1syyA/nostruct-align/1syyA.t04-thin90.a2m.gz
# 1syyA.t04-thin90.a2m with 260 sequences, total weight= 260 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26147 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1syyA/info/1syyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1syyA/nostruct-align/1syyA.t04-thin90.a2m.gz, have 253150 columns in 1049 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vknA/nostruct-align/1vknA.t04-thin90.a2m.gz
# 1vknA.t04-thin90.a2m with 1463 sequences, total weight= 1463 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25006 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vknA/info/1vknA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vknA/nostruct-align/1vknA.t04-thin90.a2m.gz, have 253490 columns in 1050 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a62/nostruct-align/1a62.t04-thin90.a2m.gz
# 1a62.t04-thin90.a2m with 84 sequences, total weight= 12.7083 avg weight= 0.151289 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a62/info/1a62.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a62/nostruct-align/1a62.t04-thin90.a2m.gz, have 253615 columns in 1051 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e6bA/nostruct-align/1e6bA.t04-thin90.a2m.gz
# 1e6bA.t04-thin90.a2m with 1644 sequences, total weight= 1644 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02422 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e6bA/info/1e6bA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e6bA/nostruct-align/1e6bA.t04-thin90.a2m.gz, have 253809 columns in 1052 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nzyA/nostruct-align/1nzyA.t04-thin90.a2m.gz
# 1nzyA.t04-thin90.a2m with 1301 sequences, total weight= 1301 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17953 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nzyA/info/1nzyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nzyA/nostruct-align/1nzyA.t04-thin90.a2m.gz, have 254078 columns in 1053 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r7jA/nostruct-align/1r7jA.t04-thin90.a2m.gz
# 1r7jA.t04-thin90.a2m with 25 sequences, total weight= 23.3674 avg weight= 0.934697 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r7jA/info/1r7jA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r7jA/nostruct-align/1r7jA.t04-thin90.a2m.gz, have 254168 columns in 1054 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bgc/nostruct-align/1bgc.t04-thin90.a2m.gz
# 1bgc.t04-thin90.a2m with 40 sequences, total weight= 15.568 avg weight= 0.389201 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bgc/info/1bgc.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bgc/nostruct-align/1bgc.t04-thin90.a2m.gz, have 254326 columns in 1055 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j1yA/nostruct-align/1j1yA.t04-thin90.a2m.gz
# 1j1yA.t04-thin90.a2m with 646 sequences, total weight= 646 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.98897 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j1yA/info/1j1yA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j1yA/nostruct-align/1j1yA.t04-thin90.a2m.gz, have 254442 columns in 1056 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qxyA/nostruct-align/1qxyA.t04-thin90.a2m.gz
# 1qxyA.t04-thin90.a2m with 791 sequences, total weight= 791 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17807 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qxyA/info/1qxyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qxyA/nostruct-align/1qxyA.t04-thin90.a2m.gz, have 254691 columns in 1057 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oz2A/nostruct-align/1oz2A.t04-thin90.a2m.gz
# 1oz2A.t04-thin90.a2m with 52 sequences, total weight= 36.918 avg weight= 0.709962 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oz2A/info/1oz2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oz2A/nostruct-align/1oz2A.t04-thin90.a2m.gz, have 255015 columns in 1058 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1shuX/nostruct-align/1shuX.t04-thin90.a2m.gz
# 1shuX.t04-thin90.a2m with 1362 sequences, total weight= 1362 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.930769 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1shuX/info/1shuX.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1shuX/nostruct-align/1shuX.t04-thin90.a2m.gz, have 255196 columns in 1059 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h8uA/nostruct-align/1h8uA.t04-thin90.a2m.gz
# 1h8uA.t04-thin90.a2m with 1125 sequences, total weight= 1125 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04053 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h8uA/info/1h8uA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h8uA/nostruct-align/1h8uA.t04-thin90.a2m.gz, have 255311 columns in 1060 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oc7A/nostruct-align/1oc7A.t04-thin90.a2m.gz
# 1oc7A.t04-thin90.a2m with 71 sequences, total weight= 19.5403 avg weight= 0.275216 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oc7A/info/1oc7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oc7A/nostruct-align/1oc7A.t04-thin90.a2m.gz, have 255675 columns in 1061 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ufoA/nostruct-align/1ufoA.t04-thin90.a2m.gz
# 1ufoA.t04-thin90.a2m with 2366 sequences, total weight= 2366 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.86691 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ufoA/info/1ufoA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ufoA/nostruct-align/1ufoA.t04-thin90.a2m.gz, have 255913 columns in 1062 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1ji7A/nostruct-align/1ji7A.t04-thin90.a2m.gz
# 1ji7A.t04-thin90.a2m with 43 sequences, total weight= 28.0351 avg weight= 0.65198 37 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1ji7A/info/1ji7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1ji7A/nostruct-align/1ji7A.t04-thin90.a2m.gz, have 255990 columns in 1063 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wkrA/nostruct-align/1wkrA.t04-thin90.a2m.gz
# 1wkrA.t04-thin90.a2m with 794 sequences, total weight= 794 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19643 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wkrA/info/1wkrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wkrA/nostruct-align/1wkrA.t04-thin90.a2m.gz, have 256330 columns in 1064 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nszA/nostruct-align/1nszA.t04-thin90.a2m.gz
# 1nszA.t04-thin90.a2m with 280 sequences, total weight= 280 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14092 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nszA/info/1nszA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nszA/nostruct-align/1nszA.t04-thin90.a2m.gz, have 256670 columns in 1065 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q74A/nostruct-align/1q74A.t04-thin90.a2m.gz
# 1q74A.t04-thin90.a2m with 190 sequences, total weight= 190 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0103 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q74A/info/1q74A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q74A/nostruct-align/1q74A.t04-thin90.a2m.gz, have 256957 columns in 1066 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dd9A/nostruct-align/1dd9A.t04-thin90.a2m.gz
# 1dd9A.t04-thin90.a2m with 309 sequences, total weight= 309 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02868 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dd9A/info/1dd9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dd9A/nostruct-align/1dd9A.t04-thin90.a2m.gz, have 257267 columns in 1067 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mml/nostruct-align/1mml.t04-thin90.a2m.gz
# 1mml.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.867811 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mml/info/1mml.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mml/nostruct-align/1mml.t04-thin90.a2m.gz, have 257518 columns in 1068 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1aquA/nostruct-align/1aquA.t04-thin90.a2m.gz
# 1aquA.t04-thin90.a2m with 374 sequences, total weight= 374 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.910823 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1aquA/info/1aquA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1aquA/nostruct-align/1aquA.t04-thin90.a2m.gz, have 257799 columns in 1069 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i2kA/nostruct-align/1i2kA.t04-thin90.a2m.gz
# 1i2kA.t04-thin90.a2m with 398 sequences, total weight= 398 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20496 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i2kA/info/1i2kA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i2kA/nostruct-align/1i2kA.t04-thin90.a2m.gz, have 258068 columns in 1070 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sc3A/nostruct-align/1sc3A.t04-thin90.a2m.gz
# 1sc3A.t04-thin90.a2m with 148 sequences, total weight= 78.2759 avg weight= 0.528891 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30077 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sc3A/info/1sc3A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sc3A/nostruct-align/1sc3A.t04-thin90.a2m.gz, have 258241 columns in 1071 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m9zA/nostruct-align/1m9zA.t04-thin90.a2m.gz
# 1m9zA.t04-thin90.a2m with 9 sequences, total weight= 3.52047 avg weight= 0.391164 14 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m9zA/info/1m9zA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m9zA/nostruct-align/1m9zA.t04-thin90.a2m.gz, have 258346 columns in 1072 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c1dA/nostruct-align/1c1dA.t04-thin90.a2m.gz
# 1c1dA.t04-thin90.a2m with 592 sequences, total weight= 592 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19968 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c1dA/info/1c1dA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1c1dA/nostruct-align/1c1dA.t04-thin90.a2m.gz, have 258695 columns in 1073 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vk5A/nostruct-align/1vk5A.t04-thin90.a2m.gz
# 1vk5A.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18865 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vk5A/info/1vk5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vk5A/nostruct-align/1vk5A.t04-thin90.a2m.gz, have 258816 columns in 1074 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ie9A/nostruct-align/1ie9A.t04-thin90.a2m.gz
# 1ie9A.t04-thin90.a2m with 745 sequences, total weight= 745 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.825561 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ie9A/info/1ie9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ie9A/nostruct-align/1ie9A.t04-thin90.a2m.gz, have 259071 columns in 1075 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54A/nostruct-align/1v54A.t04-thin90.a2m.gz
# 1v54A.t04-thin90.a2m with 497 sequences, total weight= 5.62025 avg weight= 0.0113084 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54A/info/1v54A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v54A/nostruct-align/1v54A.t04-thin90.a2m.gz, have 259585 columns in 1076 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nogA/nostruct-align/1nogA.t04-thin90.a2m.gz
# 1nogA.t04-thin90.a2m with 87 sequences, total weight= 17.6839 avg weight= 0.203263 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nogA/info/1nogA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nogA/nostruct-align/1nogA.t04-thin90.a2m.gz, have 259734 columns in 1077 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1ay7B/nostruct-align/1ay7B.t04-thin90.a2m.gz
# 1ay7B.t04-thin90.a2m with 29 sequences, total weight= 29 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26778 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1ay7B/info/1ay7B.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1ay7B/nostruct-align/1ay7B.t04-thin90.a2m.gz, have 259823 columns in 1078 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cruA/nostruct-align/1cruA.t04-thin90.a2m.gz
# 1cruA.t04-thin90.a2m with 482 sequences, total weight= 482 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.953776 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cruA/info/1cruA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cruA/nostruct-align/1cruA.t04-thin90.a2m.gz, have 260271 columns in 1079 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dc1A/nostruct-align/1dc1A.t04-thin90.a2m.gz
# 1dc1A.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14377 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dc1A/info/1dc1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dc1A/nostruct-align/1dc1A.t04-thin90.a2m.gz, have 260581 columns in 1080 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kid/nostruct-align/1kid.t04-thin90.a2m.gz
# 1kid.t04-thin90.a2m with 350 sequences, total weight= 15.1035 avg weight= 0.0431527 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kid/info/1kid.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kid/nostruct-align/1kid.t04-thin90.a2m.gz, have 260774 columns in 1081 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rliA/nostruct-align/1rliA.t04-thin90.a2m.gz
# 1rliA.t04-thin90.a2m with 857 sequences, total weight= 857 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.986474 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rliA/info/1rliA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rliA/nostruct-align/1rliA.t04-thin90.a2m.gz, have 260930 columns in 1082 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1moq/nostruct-align/1moq.t04-thin90.a2m.gz
# 1moq.t04-thin90.a2m with 910 sequences, total weight= 910 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03094 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1moq/info/1moq.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1moq/nostruct-align/1moq.t04-thin90.a2m.gz, have 261296 columns in 1083 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ryqA/nostruct-align/1ryqA.t04-thin90.a2m.gz
# 1ryqA.t04-thin90.a2m with 45 sequences, total weight= 13.0734 avg weight= 0.29052 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ryqA/info/1ryqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1ryqA/nostruct-align/1ryqA.t04-thin90.a2m.gz, have 261360 columns in 1084 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fm0E/nostruct-align/1fm0E.t04-thin90.a2m.gz
# 1fm0E.t04-thin90.a2m with 128 sequences, total weight= 33.2864 avg weight= 0.26005 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fm0E/info/1fm0E.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fm0E/nostruct-align/1fm0E.t04-thin90.a2m.gz, have 261502 columns in 1085 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e7lA/nostruct-align/1e7lA.t04-thin90.a2m.gz
# 1e7lA.t04-thin90.a2m with 14 sequences, total weight= 10.5105 avg weight= 0.750753 20 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e7lA/info/1e7lA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e7lA/nostruct-align/1e7lA.t04-thin90.a2m.gz, have 261659 columns in 1086 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q92A/nostruct-align/1q92A.t04-thin90.a2m.gz
# 1q92A.t04-thin90.a2m with 1208 sequences, total weight= 1208 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.928796 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q92A/info/1q92A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q92A/nostruct-align/1q92A.t04-thin90.a2m.gz, have 261854 columns in 1087 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jyeA/nostruct-align/1jyeA.t04-thin90.a2m.gz
# 1jyeA.t04-thin90.a2m with 1355 sequences, total weight= 1355 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00183 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jyeA/info/1jyeA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jyeA/nostruct-align/1jyeA.t04-thin90.a2m.gz, have 262125 columns in 1088 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lst/nostruct-align/1lst.t04-thin90.a2m.gz
# 1lst.t04-thin90.a2m with 1479 sequences, total weight= 1479 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.902627 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lst/info/1lst.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lst/nostruct-align/1lst.t04-thin90.a2m.gz, have 262363 columns in 1089 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qwoA/nostruct-align/1qwoA.t04-thin90.a2m.gz
# 1qwoA.t04-thin90.a2m with 243 sequences, total weight= 243 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.946555 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qwoA/info/1qwoA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qwoA/nostruct-align/1qwoA.t04-thin90.a2m.gz, have 262798 columns in 1090 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k1eA/nostruct-align/1k1eA.t04-thin90.a2m.gz
# 1k1eA.t04-thin90.a2m with 196 sequences, total weight= 196 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2164 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k1eA/info/1k1eA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k1eA/nostruct-align/1k1eA.t04-thin90.a2m.gz, have 262975 columns in 1091 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2h/2hft/nostruct-align/2hft.t04-thin90.a2m.gz
# 2hft.t04-thin90.a2m with 161 sequences, total weight= 161 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.989503 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2h/2hft/info/2hft.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2h/2hft/nostruct-align/2hft.t04-thin90.a2m.gz, have 263180 columns in 1092 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/19/19hcA/nostruct-align/19hcA.t04-thin90.a2m.gz
# 19hcA.t04-thin90.a2m with 340 sequences, total weight= 340 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.763407 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/19/19hcA/info/19hcA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/19/19hcA/nostruct-align/19hcA.t04-thin90.a2m.gz, have 263472 columns in 1093 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g66A/nostruct-align/1g66A.t04-thin90.a2m.gz
# 1g66A.t04-thin90.a2m with 103 sequences, total weight= 103 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26964 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g66A/info/1g66A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g66A/nostruct-align/1g66A.t04-thin90.a2m.gz, have 263679 columns in 1094 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wmzA/nostruct-align/1wmzA.t04-thin90.a2m.gz
# 1wmzA.t04-thin90.a2m with 1460 sequences, total weight= 1460 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.970846 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wmzA/info/1wmzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wmzA/nostruct-align/1wmzA.t04-thin90.a2m.gz, have 263819 columns in 1095 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ew6A/nostruct-align/1ew6A.t04-thin90.a2m.gz
# 1ew6A.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.568482 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ew6A/info/1ew6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ew6A/nostruct-align/1ew6A.t04-thin90.a2m.gz, have 263956 columns in 1096 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h97A/nostruct-align/1h97A.t04-thin90.a2m.gz
# 1h97A.t04-thin90.a2m with 637 sequences, total weight= 637 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29804 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h97A/info/1h97A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h97A/nostruct-align/1h97A.t04-thin90.a2m.gz, have 264103 columns in 1097 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2n/2nacA/nostruct-align/2nacA.t04-thin90.a2m.gz
# 2nacA.t04-thin90.a2m with 1392 sequences, total weight= 1392 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12638 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2n/2nacA/info/2nacA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2n/2nacA/nostruct-align/2nacA.t04-thin90.a2m.gz, have 264477 columns in 1098 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i0rA/nostruct-align/1i0rA.t04-thin90.a2m.gz
# 1i0rA.t04-thin90.a2m with 344 sequences, total weight= 344 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20736 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i0rA/info/1i0rA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i0rA/nostruct-align/1i0rA.t04-thin90.a2m.gz, have 264638 columns in 1099 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nbuA/nostruct-align/1nbuA.t04-thin90.a2m.gz
# 1nbuA.t04-thin90.a2m with 151 sequences, total weight= 66.0431 avg weight= 0.437372 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3011 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nbuA/info/1nbuA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nbuA/nostruct-align/1nbuA.t04-thin90.a2m.gz, have 264756 columns in 1100 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sj1A/nostruct-align/1sj1A.t04-thin90.a2m.gz
# 1sj1A.t04-thin90.a2m with 175 sequences, total weight= 74.8402 avg weight= 0.427659 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.301 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sj1A/info/1sj1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sj1A/nostruct-align/1sj1A.t04-thin90.a2m.gz, have 264822 columns in 1101 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gtvA/nostruct-align/1gtvA.t04-thin90.a2m.gz
# 1gtvA.t04-thin90.a2m with 1741 sequences, total weight= 1741 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.812707 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gtvA/info/1gtvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gtvA/nostruct-align/1gtvA.t04-thin90.a2m.gz, have 265030 columns in 1102 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nwzA/nostruct-align/1nwzA.t04-thin90.a2m.gz
# 1nwzA.t04-thin90.a2m with 8 sequences, total weight= 4.66201 avg weight= 0.582751 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nwzA/info/1nwzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nwzA/nostruct-align/1nwzA.t04-thin90.a2m.gz, have 265155 columns in 1103 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bqcA/nostruct-align/1bqcA.t04-thin90.a2m.gz
# 1bqcA.t04-thin90.a2m with 1686 sequences, total weight= 1686 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.800412 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bqcA/info/1bqcA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bqcA/nostruct-align/1bqcA.t04-thin90.a2m.gz, have 265457 columns in 1104 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vl1A/nostruct-align/1vl1A.t04-thin90.a2m.gz
# 1vl1A.t04-thin90.a2m with 284 sequences, total weight= 66.5884 avg weight= 0.234466 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vl1A/info/1vl1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vl1A/nostruct-align/1vl1A.t04-thin90.a2m.gz, have 265675 columns in 1105 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cqmA/nostruct-align/1cqmA.t04-thin90.a2m.gz
# 1cqmA.t04-thin90.a2m with 149 sequences, total weight= 68.2859 avg weight= 0.458294 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30076 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cqmA/info/1cqmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cqmA/nostruct-align/1cqmA.t04-thin90.a2m.gz, have 265773 columns in 1106 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iktA/nostruct-align/1iktA.t04-thin90.a2m.gz
# 1iktA.t04-thin90.a2m with 91 sequences, total weight= 85.5767 avg weight= 0.940403 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iktA/info/1iktA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iktA/nostruct-align/1iktA.t04-thin90.a2m.gz, have 265888 columns in 1107 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rhs/nostruct-align/1rhs.t04-thin90.a2m.gz
# 1rhs.t04-thin90.a2m with 988 sequences, total weight= 988 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.975549 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rhs/info/1rhs.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rhs/nostruct-align/1rhs.t04-thin90.a2m.gz, have 266181 columns in 1108 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j8rA/nostruct-align/1j8rA.t04-thin90.a2m.gz
# 1j8rA.t04-thin90.a2m with 6 sequences, total weight= 3.63797 avg weight= 0.606329 14 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j8rA/info/1j8rA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j8rA/nostruct-align/1j8rA.t04-thin90.a2m.gz, have 266377 columns in 1109 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k3xA/nostruct-align/1k3xA.t04-thin90.a2m.gz
# 1k3xA.t04-thin90.a2m with 183 sequences, total weight= 58.1206 avg weight= 0.317599 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30035 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k3xA/info/1k3xA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k3xA/nostruct-align/1k3xA.t04-thin90.a2m.gz, have 266630 columns in 1110 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iooA/nostruct-align/1iooA.t04-thin90.a2m.gz
# 1iooA.t04-thin90.a2m with 456 sequences, total weight= 138.472 avg weight= 0.303666 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30537 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iooA/info/1iooA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iooA/nostruct-align/1iooA.t04-thin90.a2m.gz, have 266826 columns in 1111 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gweA/nostruct-align/1gweA.t04-thin90.a2m.gz
# 1gweA.t04-thin90.a2m with 302 sequences, total weight= 53.383 avg weight= 0.176765 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gweA/info/1gweA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gweA/nostruct-align/1gweA.t04-thin90.a2m.gz, have 267324 columns in 1112 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oqvA/nostruct-align/1oqvA.t04-thin90.a2m.gz
# 1oqvA.t04-thin90.a2m with 14 sequences, total weight= 4.6121 avg weight= 0.329436 17 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oqvA/info/1oqvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oqvA/nostruct-align/1oqvA.t04-thin90.a2m.gz, have 267495 columns in 1113 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jlvA/nostruct-align/1jlvA.t04-thin90.a2m.gz
# 1jlvA.t04-thin90.a2m with 1693 sequences, total weight= 1693 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.994468 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jlvA/info/1jlvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jlvA/nostruct-align/1jlvA.t04-thin90.a2m.gz, have 267702 columns in 1114 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nrvA/nostruct-align/1nrvA.t04-thin90.a2m.gz
# 1nrvA.t04-thin90.a2m with 500 sequences, total weight= 500 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29186 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nrvA/info/1nrvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nrvA/nostruct-align/1nrvA.t04-thin90.a2m.gz, have 267802 columns in 1115 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kcqA/nostruct-align/1kcqA.t04-thin90.a2m.gz
# 1kcqA.t04-thin90.a2m with 369 sequences, total weight= 369 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08601 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kcqA/info/1kcqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kcqA/nostruct-align/1kcqA.t04-thin90.a2m.gz, have 267905 columns in 1116 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w53A/nostruct-align/1w53A.t04-thin90.a2m.gz
# 1w53A.t04-thin90.a2m with 6 sequences, total weight= 3.84744 avg weight= 0.64124 14 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w53A/info/1w53A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w53A/nostruct-align/1w53A.t04-thin90.a2m.gz, have 267989 columns in 1117 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bdmA/nostruct-align/1bdmA.t04-thin90.a2m.gz
# 1bdmA.t04-thin90.a2m with 1684 sequences, total weight= 1684 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02299 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bdmA/info/1bdmA.stride-mixed.near-backbone-11
WARNING: skipping a, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bdmA/nostruct-align/1bdmA.t04-thin90.a2m.gz, have 268306 columns in 1118 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2i/2ilk/nostruct-align/2ilk.t04-thin90.a2m.gz
# 2ilk.t04-thin90.a2m with 43 sequences, total weight= 27.6875 avg weight= 0.643896 37 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2i/2ilk/info/2ilk.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2i/2ilk/nostruct-align/2ilk.t04-thin90.a2m.gz, have 268461 columns in 1119 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h2eA/nostruct-align/1h2eA.t04-thin90.a2m.gz
# 1h2eA.t04-thin90.a2m with 864 sequences, total weight= 864 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03035 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h2eA/info/1h2eA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h2eA/nostruct-align/1h2eA.t04-thin90.a2m.gz, have 268668 columns in 1120 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uzbA/nostruct-align/1uzbA.t04-thin90.a2m.gz
# 1uzbA.t04-thin90.a2m with 1926 sequences, total weight= 1926 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29395 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uzbA/info/1uzbA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uzbA/nostruct-align/1uzbA.t04-thin90.a2m.gz, have 269184 columns in 1121 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w2fA/nostruct-align/1w2fA.t04-thin90.a2m.gz
# 1w2fA.t04-thin90.a2m with 102 sequences, total weight= 61.35 avg weight= 0.601471 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w2fA/info/1w2fA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w2fA/nostruct-align/1w2fA.t04-thin90.a2m.gz, have 269460 columns in 1122 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1isuA/nostruct-align/1isuA.t04-thin90.a2m.gz
# 1isuA.t04-thin90.a2m with 25 sequences, total weight= 10.8977 avg weight= 0.435908 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1isuA/info/1isuA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1isuA/nostruct-align/1isuA.t04-thin90.a2m.gz, have 269522 columns in 1123 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iab/nostruct-align/1iab.t04-thin90.a2m.gz
# 1iab.t04-thin90.a2m with 358 sequences, total weight= 358 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23898 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iab/info/1iab.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iab/nostruct-align/1iab.t04-thin90.a2m.gz, have 269722 columns in 1124 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qusA/nostruct-align/1qusA.t04-thin90.a2m.gz
# 1qusA.t04-thin90.a2m with 126 sequences, total weight= 87.5179 avg weight= 0.694586 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qusA/info/1qusA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qusA/nostruct-align/1qusA.t04-thin90.a2m.gz, have 270034 columns in 1125 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mc2A/nostruct-align/1mc2A.t04-thin90.a2m.gz
# 1mc2A.t04-thin90.a2m with 225 sequences, total weight= 21.8227 avg weight= 0.09699 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mc2A/info/1mc2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mc2A/nostruct-align/1mc2A.t04-thin90.a2m.gz, have 270156 columns in 1126 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qtwA/nostruct-align/1qtwA.t04-thin90.a2m.gz
# 1qtwA.t04-thin90.a2m with 634 sequences, total weight= 634 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.896768 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qtwA/info/1qtwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qtwA/nostruct-align/1qtwA.t04-thin90.a2m.gz, have 270441 columns in 1127 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vsrA/nostruct-align/1vsrA.t04-thin90.a2m.gz
# 1vsrA.t04-thin90.a2m with 23 sequences, total weight= 13.0207 avg weight= 0.566115 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vsrA/info/1vsrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vsrA/nostruct-align/1vsrA.t04-thin90.a2m.gz, have 270575 columns in 1128 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1na3A/nostruct-align/1na3A.t04-thin90.a2m.gz
# 1na3A.t04-thin90.a2m with 3809 sequences, total weight= 3809 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.960599 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1na3A/info/1na3A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1na3A/nostruct-align/1na3A.t04-thin90.a2m.gz, have 270661 columns in 1129 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lo7A/nostruct-align/1lo7A.t04-thin90.a2m.gz
# 1lo7A.t04-thin90.a2m with 550 sequences, total weight= 550 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.958519 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lo7A/nostruct-align/1lo7A.t04-thin90.a2m.gz, have 270801 columns in 1130 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1flmA/nostruct-align/1flmA.t04-thin90.a2m.gz
# 1flmA.t04-thin90.a2m with 10 sequences, total weight= 5.81372 avg weight= 0.581372 19 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1flmA/info/1flmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1flmA/nostruct-align/1flmA.t04-thin90.a2m.gz, have 270923 columns in 1131 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lb6A/nostruct-align/1lb6A.t04-thin90.a2m.gz
# 1lb6A.t04-thin90.a2m with 100 sequences, total weight= 82.1998 avg weight= 0.821998 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lb6A/info/1lb6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lb6A/nostruct-align/1lb6A.t04-thin90.a2m.gz, have 271078 columns in 1132 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gci/nostruct-align/1gci.t04-thin90.a2m.gz
# 1gci.t04-thin90.a2m with 893 sequences, total weight= 893 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21285 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gci/info/1gci.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gci/nostruct-align/1gci.t04-thin90.a2m.gz, have 271347 columns in 1133 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1juvA/nostruct-align/1juvA.t04-thin90.a2m.gz
# 1juvA.t04-thin90.a2m with 278 sequences, total weight= 278 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28427 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1juvA/info/1juvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1juvA/nostruct-align/1juvA.t04-thin90.a2m.gz, have 271540 columns in 1134 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d1qA/nostruct-align/1d1qA.t04-thin90.a2m.gz
# 1d1qA.t04-thin90.a2m with 308 sequences, total weight= 211.843 avg weight= 0.687803 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3033 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d1qA/info/1d1qA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d1qA/nostruct-align/1d1qA.t04-thin90.a2m.gz, have 271699 columns in 1135 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1unqA/nostruct-align/1unqA.t04-thin90.a2m.gz
# 1unqA.t04-thin90.a2m with 1234 sequences, total weight= 1234 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.896505 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1unqA/info/1unqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1unqA/nostruct-align/1unqA.t04-thin90.a2m.gz, have 271816 columns in 1136 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g4yB/nostruct-align/1g4yB.t04-thin90.a2m.gz
# 1g4yB.t04-thin90.a2m with 13 sequences, total weight= 4.48147 avg weight= 0.344728 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g4yB/info/1g4yB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g4yB/nostruct-align/1g4yB.t04-thin90.a2m.gz, have 271897 columns in 1137 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m1nA/nostruct-align/1m1nA.t04-thin90.a2m.gz
# 1m1nA.t04-thin90.a2m with 398 sequences, total weight= 398 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21889 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m1nA/info/1m1nA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m1nA/nostruct-align/1m1nA.t04-thin90.a2m.gz, have 272374 columns in 1138 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tzpA/nostruct-align/1tzpA.t04-thin90.a2m.gz
# 1tzpA.t04-thin90.a2m with 25 sequences, total weight= 7.75681 avg weight= 0.310272 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tzpA/info/1tzpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tzpA/nostruct-align/1tzpA.t04-thin90.a2m.gz, have 272614 columns in 1139 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n3lA/nostruct-align/1n3lA.t04-thin90.a2m.gz
# 1n3lA.t04-thin90.a2m with 465 sequences, total weight= 465 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24112 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n3lA/info/1n3lA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n3lA/nostruct-align/1n3lA.t04-thin90.a2m.gz, have 272946 columns in 1140 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1us0A/nostruct-align/1us0A.t04-thin90.a2m.gz
# 1us0A.t04-thin90.a2m with 1312 sequences, total weight= 1312 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24796 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1us0A/info/1us0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1us0A/nostruct-align/1us0A.t04-thin90.a2m.gz, have 273259 columns in 1141 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l8rA/nostruct-align/1l8rA.t04-thin90.a2m.gz
# 1l8rA.t04-thin90.a2m with 10 sequences, total weight= 2.54604 avg weight= 0.254604 11 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l8rA/info/1l8rA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l8rA/nostruct-align/1l8rA.t04-thin90.a2m.gz, have 273360 columns in 1142 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p9aG/nostruct-align/1p9aG.t04-thin90.a2m.gz
# 1p9aG.t04-thin90.a2m with 3068 sequences, total weight= 3068 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02896 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p9aG/info/1p9aG.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p9aG/nostruct-align/1p9aG.t04-thin90.a2m.gz, have 273626 columns in 1143 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iqcA/nostruct-align/1iqcA.t04-thin90.a2m.gz
# 1iqcA.t04-thin90.a2m with 235 sequences, total weight= 235 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05529 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iqcA/info/1iqcA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iqcA/nostruct-align/1iqcA.t04-thin90.a2m.gz, have 273934 columns in 1144 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i0dA/nostruct-align/1i0dA.t04-thin90.a2m.gz
# 1i0dA.t04-thin90.a2m with 475 sequences, total weight= 475 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.979222 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i0dA/info/1i0dA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i0dA/nostruct-align/1i0dA.t04-thin90.a2m.gz, have 274265 columns in 1145 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q7eA/nostruct-align/1q7eA.t04-thin90.a2m.gz
# 1q7eA.t04-thin90.a2m with 523 sequences, total weight= 176.332 avg weight= 0.337156 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30554 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q7eA/info/1q7eA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q7eA/nostruct-align/1q7eA.t04-thin90.a2m.gz, have 274675 columns in 1146 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tvxA/nostruct-align/1tvxA.t04-thin90.a2m.gz
# 1tvxA.t04-thin90.a2m with 169 sequences, total weight= 35.8162 avg weight= 0.21193 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30036 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tvxA/info/1tvxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tvxA/nostruct-align/1tvxA.t04-thin90.a2m.gz, have 274739 columns in 1147 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hz4A/nostruct-align/1hz4A.t04-thin90.a2m.gz
# 1hz4A.t04-thin90.a2m with 9 sequences, total weight= 3.63519 avg weight= 0.403909 14 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hz4A/info/1hz4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hz4A/nostruct-align/1hz4A.t04-thin90.a2m.gz, have 275105 columns in 1148 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wer/nostruct-align/1wer.t04-thin90.a2m.gz
# 1wer.t04-thin90.a2m with 83 sequences, total weight= 83 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17352 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wer/info/1wer.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wer/nostruct-align/1wer.t04-thin90.a2m.gz, have 275429 columns in 1149 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w0pA/nostruct-align/1w0pA.t04-thin90.a2m.gz
# 1w0pA.t04-thin90.a2m with 346 sequences, total weight= 346 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04439 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w0pA/info/1w0pA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w0pA/nostruct-align/1w0pA.t04-thin90.a2m.gz, have 276182 columns in 1150 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qe3A/nostruct-align/1qe3A.t04-thin90.a2m.gz
# 1qe3A.t04-thin90.a2m with 1949 sequences, total weight= 1949 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.962873 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qe3A/info/1qe3A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qe3A/nostruct-align/1qe3A.t04-thin90.a2m.gz, have 276649 columns in 1151 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jz8A/nostruct-align/1jz8A.t04-thin90.a2m.gz
# 1jz8A.t04-thin90.a2m with 712 sequences, total weight= 712 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04088 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jz8A/info/1jz8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jz8A/nostruct-align/1jz8A.t04-thin90.a2m.gz, have 277660 columns in 1152 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lkkA/nostruct-align/1lkkA.t04-thin90.a2m.gz
# 1lkkA.t04-thin90.a2m with 441 sequences, total weight= 441 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23535 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lkkA/info/1lkkA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lkkA/nostruct-align/1lkkA.t04-thin90.a2m.gz, have 277765 columns in 1153 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qnaA/nostruct-align/1qnaA.t04-thin90.a2m.gz
# 1qnaA.t04-thin90.a2m with 73 sequences, total weight= 23.0863 avg weight= 0.31625 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qnaA/info/1qnaA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qnaA/nostruct-align/1qnaA.t04-thin90.a2m.gz, have 277947 columns in 1154 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n7oA/nostruct-align/1n7oA.t04-thin90.a2m.gz
# 1n7oA.t04-thin90.a2m with 57 sequences, total weight= 57 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15075 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n7oA/info/1n7oA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n7oA/nostruct-align/1n7oA.t04-thin90.a2m.gz, have 278668 columns in 1155 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r5lA/nostruct-align/1r5lA.t04-thin90.a2m.gz
# 1r5lA.t04-thin90.a2m with 331 sequences, total weight= 331 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00887 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r5lA/info/1r5lA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r5lA/nostruct-align/1r5lA.t04-thin90.a2m.gz, have 278919 columns in 1156 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wouA/nostruct-align/1wouA.t04-thin90.a2m.gz
# 1wouA.t04-thin90.a2m with 1589 sequences, total weight= 1589 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13879 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wouA/info/1wouA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wouA/nostruct-align/1wouA.t04-thin90.a2m.gz, have 279038 columns in 1157 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ukfA/nostruct-align/1ukfA.t04-thin90.a2m.gz
# 1ukfA.t04-thin90.a2m with 18 sequences, total weight= 18 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17166 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ukfA/info/1ukfA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ukfA/nostruct-align/1ukfA.t04-thin90.a2m.gz, have 279226 columns in 1158 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jtgB/nostruct-align/1jtgB.t04-thin90.a2m.gz
# 1jtgB.t04-thin90.a2m with 4 sequences, total weight= 4 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1647 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jtgB/info/1jtgB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jtgB/nostruct-align/1jtgB.t04-thin90.a2m.gz, have 279391 columns in 1159 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nz0A/nostruct-align/1nz0A.t04-thin90.a2m.gz
# 1nz0A.t04-thin90.a2m with 129 sequences, total weight= 96.3981 avg weight= 0.747272 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3007 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nz0A/info/1nz0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nz0A/nostruct-align/1nz0A.t04-thin90.a2m.gz, have 279500 columns in 1160 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kw3B/nostruct-align/1kw3B.t04-thin90.a2m.gz
# 1kw3B.t04-thin90.a2m with 1391 sequences, total weight= 1391 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.951954 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kw3B/info/1kw3B.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kw3B/nostruct-align/1kw3B.t04-thin90.a2m.gz, have 279788 columns in 1161 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iv3A/nostruct-align/1iv3A.t04-thin90.a2m.gz
# 1iv3A.t04-thin90.a2m with 119 sequences, total weight= 10.0417 avg weight= 0.0843836 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iv3A/info/1iv3A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iv3A/nostruct-align/1iv3A.t04-thin90.a2m.gz, have 279938 columns in 1162 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p5vA/nostruct-align/1p5vA.t04-thin90.a2m.gz
# 1p5vA.t04-thin90.a2m with 175 sequences, total weight= 115.372 avg weight= 0.659266 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30144 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p5vA/info/1p5vA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p5vA/nostruct-align/1p5vA.t04-thin90.a2m.gz, have 280129 columns in 1163 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oi2A/nostruct-align/1oi2A.t04-thin90.a2m.gz
# 1oi2A.t04-thin90.a2m with 101 sequences, total weight= 13.0586 avg weight= 0.129293 37 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oi2A/info/1oi2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oi2A/nostruct-align/1oi2A.t04-thin90.a2m.gz, have 280465 columns in 1164 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jf8A/nostruct-align/1jf8A.t04-thin90.a2m.gz
# 1jf8A.t04-thin90.a2m with 310 sequences, total weight= 133.038 avg weight= 0.429155 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30499 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jf8A/info/1jf8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jf8A/nostruct-align/1jf8A.t04-thin90.a2m.gz, have 280595 columns in 1165 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b6a/nostruct-align/1b6a.t04-thin90.a2m.gz
# 1b6a.t04-thin90.a2m with 782 sequences, total weight= 782 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15567 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b6a/info/1b6a.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1b6a/nostruct-align/1b6a.t04-thin90.a2m.gz, have 280950 columns in 1166 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gudA/nostruct-align/1gudA.t04-thin90.a2m.gz
# 1gudA.t04-thin90.a2m with 1382 sequences, total weight= 1382 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.949243 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gudA/info/1gudA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gudA/nostruct-align/1gudA.t04-thin90.a2m.gz, have 281238 columns in 1167 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k7iA/nostruct-align/1k7iA.t04-thin90.a2m.gz
# 1k7iA.t04-thin90.a2m with 746 sequences, total weight= 746 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05402 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k7iA/info/1k7iA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k7iA/nostruct-align/1k7iA.t04-thin90.a2m.gz, have 281700 columns in 1168 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a8o/nostruct-align/1a8o.t04-thin90.a2m.gz
# 1a8o.t04-thin90.a2m with 34 sequences, total weight= 2.80519 avg weight= 0.0825056 14 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a8o/info/1a8o.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a8o/nostruct-align/1a8o.t04-thin90.a2m.gz, have 281770 columns in 1169 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ew4A/nostruct-align/1ew4A.t04-thin90.a2m.gz
# 1ew4A.t04-thin90.a2m with 61 sequences, total weight= 19.3309 avg weight= 0.3169 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ew4A/info/1ew4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ew4A/nostruct-align/1ew4A.t04-thin90.a2m.gz, have 281876 columns in 1170 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3v/3vub/nostruct-align/3vub.t04-thin90.a2m.gz
# 3vub.t04-thin90.a2m with 11 sequences, total weight= 7.94145 avg weight= 0.72195 17 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3v/3vub/info/3vub.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/3v/3vub/nostruct-align/3vub.t04-thin90.a2m.gz, have 281977 columns in 1171 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2baa/nostruct-align/2baa.t04-thin90.a2m.gz
# 2baa.t04-thin90.a2m with 241 sequences, total weight= 41.5524 avg weight= 0.172417 42 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2baa/info/2baa.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2b/2baa/nostruct-align/2baa.t04-thin90.a2m.gz, have 282220 columns in 1172 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2f/2fdn/nostruct-align/2fdn.t04-thin90.a2m.gz
# 2fdn.t04-thin90.a2m with 284 sequences, total weight= 22.1738 avg weight= 0.0780768 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3004 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2f/2fdn/info/2fdn.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2f/2fdn/nostruct-align/2fdn.t04-thin90.a2m.gz, have 282275 columns in 1173 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l6xA/nostruct-align/1l6xA.t04-thin90.a2m.gz
# 1l6xA.t04-thin90.a2m with 1478 sequences, total weight= 126.158 avg weight= 0.0853574 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31183 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l6xA/info/1l6xA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l6xA/nostruct-align/1l6xA.t04-thin90.a2m.gz, have 282482 columns in 1174 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1smbA/nostruct-align/1smbA.t04-thin90.a2m.gz
# 1smbA.t04-thin90.a2m with 465 sequences, total weight= 465 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2728 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1smbA/info/1smbA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1smbA/nostruct-align/1smbA.t04-thin90.a2m.gz, have 282631 columns in 1175 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mxrA/nostruct-align/1mxrA.t04-thin90.a2m.gz
# 1mxrA.t04-thin90.a2m with 217 sequences, total weight= 217 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25536 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mxrA/info/1mxrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mxrA/nostruct-align/1mxrA.t04-thin90.a2m.gz, have 282970 columns in 1176 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t82A/nostruct-align/1t82A.t04-thin90.a2m.gz
# 1t82A.t04-thin90.a2m with 177 sequences, total weight= 177 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11305 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t82A/info/1t82A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t82A/nostruct-align/1t82A.t04-thin90.a2m.gz, have 283113 columns in 1177 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n6aA/nostruct-align/1n6aA.t04-thin90.a2m.gz
# 1n6aA.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14362 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n6aA/info/1n6aA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n6aA/nostruct-align/1n6aA.t04-thin90.a2m.gz, have 283347 columns in 1178 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ecsA/nostruct-align/1ecsA.t04-thin90.a2m.gz
# 1ecsA.t04-thin90.a2m with 1354 sequences, total weight= 1354 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.864407 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ecsA/info/1ecsA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ecsA/nostruct-align/1ecsA.t04-thin90.a2m.gz, have 283467 columns in 1179 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f7dA/nostruct-align/1f7dA.t04-thin90.a2m.gz
# 1f7dA.t04-thin90.a2m with 414 sequences, total weight= 414 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17016 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f7dA/info/1f7dA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f7dA/nostruct-align/1f7dA.t04-thin90.a2m.gz, have 283585 columns in 1180 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lk9A/nostruct-align/1lk9A.t04-thin90.a2m.gz
# 1lk9A.t04-thin90.a2m with 2151 sequences, total weight= 2151 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00669 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lk9A/info/1lk9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lk9A/nostruct-align/1lk9A.t04-thin90.a2m.gz, have 284010 columns in 1181 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pmhX/nostruct-align/1pmhX.t04-thin90.a2m.gz
# 1pmhX.t04-thin90.a2m with 5 sequences, total weight= 5 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26433 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pmhX/info/1pmhX.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pmhX/nostruct-align/1pmhX.t04-thin90.a2m.gz, have 284193 columns in 1182 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m1qA/nostruct-align/1m1qA.t04-thin90.a2m.gz
# 1m1qA.t04-thin90.a2m with 47 sequences, total weight= 47 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21848 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m1qA/info/1m1qA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m1qA/nostruct-align/1m1qA.t04-thin90.a2m.gz, have 284283 columns in 1183 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nnxA/nostruct-align/1nnxA.t04-thin90.a2m.gz
# 1nnxA.t04-thin90.a2m with 33 sequences, total weight= 14.979 avg weight= 0.45391 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nnxA/info/1nnxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nnxA/nostruct-align/1nnxA.t04-thin90.a2m.gz, have 284376 columns in 1184 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ouwA/nostruct-align/1ouwA.t04-thin90.a2m.gz
# 1ouwA.t04-thin90.a2m with 217 sequences, total weight= 70.4068 avg weight= 0.324456 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30081 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ouwA/info/1ouwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ouwA/nostruct-align/1ouwA.t04-thin90.a2m.gz, have 284525 columns in 1185 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fm0D/nostruct-align/1fm0D.t04-thin90.a2m.gz
# 1fm0D.t04-thin90.a2m with 167 sequences, total weight= 47.696 avg weight= 0.285605 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30044 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fm0D/info/1fm0D.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fm0D/nostruct-align/1fm0D.t04-thin90.a2m.gz, have 284606 columns in 1186 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h99A/nostruct-align/1h99A.t04-thin90.a2m.gz
# 1h99A.t04-thin90.a2m with 169 sequences, total weight= 169 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01272 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h99A/info/1h99A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h99A/nostruct-align/1h99A.t04-thin90.a2m.gz, have 284826 columns in 1187 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oksA/nostruct-align/1oksA.t04-thin90.a2m.gz
# 1oksA.t04-thin90.a2m with 4 sequences, total weight= 2.99013 avg weight= 0.747532 9 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oksA/info/1oksA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oksA/nostruct-align/1oksA.t04-thin90.a2m.gz, have 284879 columns in 1188 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c9oA/nostruct-align/1c9oA.t04-thin90.a2m.gz
# 1c9oA.t04-thin90.a2m with 396 sequences, total weight= 22.1454 avg weight= 0.0559228 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c9oA/info/1c9oA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1c9oA/nostruct-align/1c9oA.t04-thin90.a2m.gz, have 284945 columns in 1189 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pa1A/nostruct-align/1pa1A.t04-thin90.a2m.gz
# 1pa1A.t04-thin90.a2m with 645 sequences, total weight= 645 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05548 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pa1A/info/1pa1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pa1A/nostruct-align/1pa1A.t04-thin90.a2m.gz, have 285247 columns in 1190 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hd2A/nostruct-align/1hd2A.t04-thin90.a2m.gz
# 1hd2A.t04-thin90.a2m with 958 sequences, total weight= 958 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24739 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hd2A/info/1hd2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hd2A/nostruct-align/1hd2A.t04-thin90.a2m.gz, have 285408 columns in 1191 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iq6A/nostruct-align/1iq6A.t04-thin90.a2m.gz
# 1iq6A.t04-thin90.a2m with 539 sequences, total weight= 539 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07913 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iq6A/info/1iq6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iq6A/nostruct-align/1iq6A.t04-thin90.a2m.gz, have 285540 columns in 1192 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ummA/nostruct-align/1ummA.t04-thin90.a2m.gz
# 1ummA.t04-thin90.a2m with 812 sequences, total weight= 812 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.989218 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ummA/info/1ummA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ummA/nostruct-align/1ummA.t04-thin90.a2m.gz, have 285689 columns in 1193 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2a/2arcA/nostruct-align/2arcA.t04-thin90.a2m.gz
# 2arcA.t04-thin90.a2m with 6 sequences, total weight= 3.43852 avg weight= 0.573086 13 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2a/2arcA/info/2arcA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2a/2arcA/nostruct-align/2arcA.t04-thin90.a2m.gz, have 285850 columns in 1194 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f6bA/nostruct-align/1f6bA.t04-thin90.a2m.gz
# 1f6bA.t04-thin90.a2m with 1151 sequences, total weight= 789.601 avg weight= 0.686013 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30954 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f6bA/info/1f6bA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f6bA/nostruct-align/1f6bA.t04-thin90.a2m.gz, have 286026 columns in 1195 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nfp/nostruct-align/1nfp.t04-thin90.a2m.gz
# 1nfp.t04-thin90.a2m with 568 sequences, total weight= 568 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10353 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nfp/info/1nfp.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nfp/nostruct-align/1nfp.t04-thin90.a2m.gz, have 286254 columns in 1196 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gppA/nostruct-align/1gppA.t04-thin90.a2m.gz
# 1gppA.t04-thin90.a2m with 39 sequences, total weight= 32.4511 avg weight= 0.832079 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gppA/info/1gppA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gppA/nostruct-align/1gppA.t04-thin90.a2m.gz, have 286471 columns in 1197 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pwxA/nostruct-align/1pwxA.t04-thin90.a2m.gz
# 1pwxA.t04-thin90.a2m with 2386 sequences, total weight= 120.993 avg weight= 0.0507098 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32547 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pwxA/info/1pwxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pwxA/nostruct-align/1pwxA.t04-thin90.a2m.gz, have 286723 columns in 1198 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1es9A/nostruct-align/1es9A.t04-thin90.a2m.gz
# 1es9A.t04-thin90.a2m with 701 sequences, total weight= 701 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.788339 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1es9A/info/1es9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1es9A/nostruct-align/1es9A.t04-thin90.a2m.gz, have 286935 columns in 1199 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eca/nostruct-align/1eca.t04-thin90.a2m.gz
# 1eca.t04-thin90.a2m with 815 sequences, total weight= 815 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2695 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eca/info/1eca.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eca/nostruct-align/1eca.t04-thin90.a2m.gz, have 287071 columns in 1200 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q7lA/nostruct-align/1q7lA.t04-thin90.a2m.gz
# 1q7lA.t04-thin90.a2m with 980 sequences, total weight= 980 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10473 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q7lA/info/1q7lA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q7lA/nostruct-align/1q7lA.t04-thin90.a2m.gz, have 287263 columns in 1201 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1ja1A/nostruct-align/1ja1A.t04-thin90.a2m.gz
# 1ja1A.t04-thin90.a2m with 1370 sequences, total weight= 1370 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.969048 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1ja1A/info/1ja1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1ja1A/nostruct-align/1ja1A.t04-thin90.a2m.gz, have 287879 columns in 1202 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h6fA/nostruct-align/1h6fA.t04-thin90.a2m.gz
# 1h6fA.t04-thin90.a2m with 141 sequences, total weight= 29.6915 avg weight= 0.210578 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h6fA/info/1h6fA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h6fA/nostruct-align/1h6fA.t04-thin90.a2m.gz, have 288063 columns in 1203 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1te2A/nostruct-align/1te2A.t04-thin90.a2m.gz
# 1te2A.t04-thin90.a2m with 2361 sequences, total weight= 2361 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.840289 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1te2A/info/1te2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1te2A/nostruct-align/1te2A.t04-thin90.a2m.gz, have 288281 columns in 1204 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54F/nostruct-align/1v54F.t04-thin90.a2m.gz
# 1v54F.t04-thin90.a2m with 26 sequences, total weight= 11.6174 avg weight= 0.446822 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54F/info/1v54F.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v54F/nostruct-align/1v54F.t04-thin90.a2m.gz, have 288379 columns in 1205 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yge/nostruct-align/1yge.t04-thin90.a2m.gz
# 1yge.t04-thin90.a2m with 150 sequences, total weight= 36.7475 avg weight= 0.244984 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yge/info/1yge.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1y/1yge/nostruct-align/1yge.t04-thin90.a2m.gz, have 289218 columns in 1206 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1in6A/nostruct-align/1in6A.t04-thin90.a2m.gz
# 1in6A.t04-thin90.a2m with 2306 sequences, total weight= 2306 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11979 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1in6A/info/1in6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1in6A/nostruct-align/1in6A.t04-thin90.a2m.gz, have 289518 columns in 1207 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u4bA/nostruct-align/1u4bA.t04-thin90.a2m.gz
# 1u4bA.t04-thin90.a2m with 498 sequences, total weight= 498 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19629 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u4bA/info/1u4bA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1u4bA/nostruct-align/1u4bA.t04-thin90.a2m.gz, have 290098 columns in 1208 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uptB/nostruct-align/1uptB.t04-thin90.a2m.gz
# 1uptB.t04-thin90.a2m with 5 sequences, total weight= 2.90339 avg weight= 0.580677 9 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uptB/info/1uptB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uptB/nostruct-align/1uptB.t04-thin90.a2m.gz, have 290156 columns in 1209 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p57A/nostruct-align/1p57A.t04-thin90.a2m.gz
# 1p57A.t04-thin90.a2m with 4 sequences, total weight= 2.26178 avg weight= 0.565446 10 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p57A/info/1p57A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p57A/nostruct-align/1p57A.t04-thin90.a2m.gz, have 290266 columns in 1210 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vlyA/nostruct-align/1vlyA.t04-thin90.a2m.gz
# 1vlyA.t04-thin90.a2m with 395 sequences, total weight= 395 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19075 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vlyA/info/1vlyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vlyA/nostruct-align/1vlyA.t04-thin90.a2m.gz, have 290589 columns in 1211 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u7iA/nostruct-align/1u7iA.t04-thin90.a2m.gz
# 1u7iA.t04-thin90.a2m with 414 sequences, total weight= 414 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01131 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u7iA/info/1u7iA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1u7iA/nostruct-align/1u7iA.t04-thin90.a2m.gz, have 290723 columns in 1212 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o4vA/nostruct-align/1o4vA.t04-thin90.a2m.gz
# 1o4vA.t04-thin90.a2m with 193 sequences, total weight= 19.2856 avg weight= 0.0999252 42 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o4vA/info/1o4vA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o4vA/nostruct-align/1o4vA.t04-thin90.a2m.gz, have 290892 columns in 1213 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gq8A/nostruct-align/1gq8A.t04-thin90.a2m.gz
# 1gq8A.t04-thin90.a2m with 306 sequences, total weight= 306 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21144 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gq8A/info/1gq8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gq8A/nostruct-align/1gq8A.t04-thin90.a2m.gz, have 291211 columns in 1214 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m2dA/nostruct-align/1m2dA.t04-thin90.a2m.gz
# 1m2dA.t04-thin90.a2m with 102 sequences, total weight= 81.868 avg weight= 0.802627 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m2dA/info/1m2dA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m2dA/nostruct-align/1m2dA.t04-thin90.a2m.gz, have 291312 columns in 1215 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1khiA/nostruct-align/1khiA.t04-thin90.a2m.gz
# 1khiA.t04-thin90.a2m with 62 sequences, total weight= 13.0066 avg weight= 0.209784 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1khiA/info/1khiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1khiA/nostruct-align/1khiA.t04-thin90.a2m.gz, have 291459 columns in 1216 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mqkH/nostruct-align/1mqkH.t04-thin90.a2m.gz
# 1mqkH.t04-thin90.a2m with 1696 sequences, total weight= 7.79089 avg weight= 0.00459369 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mqkH/info/1mqkH.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mqkH/nostruct-align/1mqkH.t04-thin90.a2m.gz, have 291582 columns in 1217 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m7gA/nostruct-align/1m7gA.t04-thin90.a2m.gz
# 1m7gA.t04-thin90.a2m with 2225 sequences, total weight= 2225 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.971515 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m7gA/info/1m7gA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m7gA/nostruct-align/1m7gA.t04-thin90.a2m.gz, have 291790 columns in 1218 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f46A/nostruct-align/1f46A.t04-thin90.a2m.gz
# 1f46A.t04-thin90.a2m with 30 sequences, total weight= 16.9729 avg weight= 0.565765 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f46A/info/1f46A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f46A/nostruct-align/1f46A.t04-thin90.a2m.gz, have 291929 columns in 1219 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gkmA/nostruct-align/1gkmA.t04-thin90.a2m.gz
# 1gkmA.t04-thin90.a2m with 184 sequences, total weight= 26.1423 avg weight= 0.142078 43 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gkmA/info/1gkmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gkmA/nostruct-align/1gkmA.t04-thin90.a2m.gz, have 292438 columns in 1220 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tu9A/nostruct-align/1tu9A.t04-thin90.a2m.gz
# 1tu9A.t04-thin90.a2m with 410 sequences, total weight= 410 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18392 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tu9A/info/1tu9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tu9A/nostruct-align/1tu9A.t04-thin90.a2m.gz, have 292569 columns in 1221 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ru4A/nostruct-align/1ru4A.t04-thin90.a2m.gz
# 1ru4A.t04-thin90.a2m with 729 sequences, total weight= 729 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.839966 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ru4A/info/1ru4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1ru4A/nostruct-align/1ru4A.t04-thin90.a2m.gz, have 292969 columns in 1222 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m33A/nostruct-align/1m33A.t04-thin90.a2m.gz
# 1m33A.t04-thin90.a2m with 2336 sequences, total weight= 2336 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.809958 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m33A/info/1m33A.stride-mixed.near-backbone-11
WARNING: skipping e, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m33A/nostruct-align/1m33A.t04-thin90.a2m.gz, have 293224 columns in 1223 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t4hA/nostruct-align/1t4hA.t04-thin90.a2m.gz
# 1t4hA.t04-thin90.a2m with 1154 sequences, total weight= 40.2313 avg weight= 0.0348625 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t4hA/info/1t4hA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t4hA/nostruct-align/1t4hA.t04-thin90.a2m.gz, have 293494 columns in 1224 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1igqA/nostruct-align/1igqA.t04-thin90.a2m.gz
# 1igqA.t04-thin90.a2m with 4 sequences, total weight= 2.20688 avg weight= 0.551719 8 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1igqA/info/1igqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1igqA/nostruct-align/1igqA.t04-thin90.a2m.gz, have 293548 columns in 1225 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mtyD/nostruct-align/1mtyD.t04-thin90.a2m.gz
# 1mtyD.t04-thin90.a2m with 108 sequences, total weight= 68.8226 avg weight= 0.637246 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mtyD/info/1mtyD.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mtyD/nostruct-align/1mtyD.t04-thin90.a2m.gz, have 294060 columns in 1226 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rxqA/nostruct-align/1rxqA.t04-thin90.a2m.gz
# 1rxqA.t04-thin90.a2m with 57 sequences, total weight= 57 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.934914 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rxqA/info/1rxqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rxqA/nostruct-align/1rxqA.t04-thin90.a2m.gz, have 294234 columns in 1227 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i24A/nostruct-align/1i24A.t04-thin90.a2m.gz
# 1i24A.t04-thin90.a2m with 2148 sequences, total weight= 2148 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01792 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i24A/info/1i24A.stride-mixed.near-backbone-11
WARNING: skipping i, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i24A/nostruct-align/1i24A.t04-thin90.a2m.gz, have 294626 columns in 1228 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o98A/nostruct-align/1o98A.t04-thin90.a2m.gz
# 1o98A.t04-thin90.a2m with 516 sequences, total weight= 516 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08222 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o98A/info/1o98A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o98A/nostruct-align/1o98A.t04-thin90.a2m.gz, have 295135 columns in 1229 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dk8A/nostruct-align/1dk8A.t04-thin90.a2m.gz
# 1dk8A.t04-thin90.a2m with 180 sequences, total weight= 180 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15864 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dk8A/info/1dk8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dk8A/nostruct-align/1dk8A.t04-thin90.a2m.gz, have 295282 columns in 1230 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qnrA/nostruct-align/1qnrA.t04-thin90.a2m.gz
# 1qnrA.t04-thin90.a2m with 1624 sequences, total weight= 1624 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.789655 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qnrA/info/1qnrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qnrA/nostruct-align/1qnrA.t04-thin90.a2m.gz, have 295626 columns in 1231 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eokA/nostruct-align/1eokA.t04-thin90.a2m.gz
# 1eokA.t04-thin90.a2m with 143 sequences, total weight= 143 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18801 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eokA/info/1eokA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eokA/nostruct-align/1eokA.t04-thin90.a2m.gz, have 295908 columns in 1232 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uehA/nostruct-align/1uehA.t04-thin90.a2m.gz
# 1uehA.t04-thin90.a2m with 238 sequences, total weight= 39.8255 avg weight= 0.167334 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uehA/info/1uehA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uehA/nostruct-align/1uehA.t04-thin90.a2m.gz, have 296122 columns in 1233 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3p/3pviA/nostruct-align/3pviA.t04-thin90.a2m.gz
# 3pviA.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24387 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3p/3pviA/info/3pviA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/3p/3pviA/nostruct-align/3pviA.t04-thin90.a2m.gz, have 296278 columns in 1234 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sh8A/nostruct-align/1sh8A.t04-thin90.a2m.gz
# 1sh8A.t04-thin90.a2m with 66 sequences, total weight= 66 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19934 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sh8A/info/1sh8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sh8A/nostruct-align/1sh8A.t04-thin90.a2m.gz, have 296431 columns in 1235 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m6kA/nostruct-align/1m6kA.t04-thin90.a2m.gz
# 1m6kA.t04-thin90.a2m with 825 sequences, total weight= 825 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05673 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m6kA/info/1m6kA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m6kA/nostruct-align/1m6kA.t04-thin90.a2m.gz, have 296681 columns in 1236 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tr0A/nostruct-align/1tr0A.t04-thin90.a2m.gz
# 1tr0A.t04-thin90.a2m with 88 sequences, total weight= 88 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13775 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tr0A/info/1tr0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tr0A/nostruct-align/1tr0A.t04-thin90.a2m.gz, have 296787 columns in 1237 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bg6/nostruct-align/1bg6.t04-thin90.a2m.gz
# 1bg6.t04-thin90.a2m with 2106 sequences, total weight= 2106 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.890582 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bg6/info/1bg6.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bg6/nostruct-align/1bg6.t04-thin90.a2m.gz, have 297136 columns in 1238 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1idpA/nostruct-align/1idpA.t04-thin90.a2m.gz
# 1idpA.t04-thin90.a2m with 11 sequences, total weight= 4.35888 avg weight= 0.396262 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1idpA/info/1idpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1idpA/nostruct-align/1idpA.t04-thin90.a2m.gz, have 297283 columns in 1239 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n7hA/nostruct-align/1n7hA.t04-thin90.a2m.gz
# 1n7hA.t04-thin90.a2m with 2140 sequences, total weight= 2140 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07493 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n7hA/info/1n7hA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n7hA/nostruct-align/1n7hA.t04-thin90.a2m.gz, have 297614 columns in 1240 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r2zA/nostruct-align/1r2zA.t04-thin90.a2m.gz
# 1r2zA.t04-thin90.a2m with 198 sequences, total weight= 51.5702 avg weight= 0.260456 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30035 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r2zA/info/1r2zA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r2zA/nostruct-align/1r2zA.t04-thin90.a2m.gz, have 297887 columns in 1241 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uq5A/nostruct-align/1uq5A.t04-thin90.a2m.gz
# 1uq5A.t04-thin90.a2m with 118 sequences, total weight= 118 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26098 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uq5A/info/1uq5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uq5A/nostruct-align/1uq5A.t04-thin90.a2m.gz, have 298150 columns in 1242 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nwwA/nostruct-align/1nwwA.t04-thin90.a2m.gz
# 1nwwA.t04-thin90.a2m with 249 sequences, total weight= 249 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.893296 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nwwA/info/1nwwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nwwA/nostruct-align/1nwwA.t04-thin90.a2m.gz, have 298295 columns in 1243 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oxjA/nostruct-align/1oxjA.t04-thin90.a2m.gz
# 1oxjA.t04-thin90.a2m with 9 sequences, total weight= 8.35563 avg weight= 0.928403 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oxjA/info/1oxjA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oxjA/nostruct-align/1oxjA.t04-thin90.a2m.gz, have 298465 columns in 1244 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bbkH/nostruct-align/2bbkH.t04-thin90.a2m.gz
# 2bbkH.t04-thin90.a2m with 2010 sequences, total weight= 2010 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.86731 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bbkH/info/2bbkH.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2b/2bbkH/nostruct-align/2bbkH.t04-thin90.a2m.gz, have 298820 columns in 1245 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i6lA/nostruct-align/1i6lA.t04-thin90.a2m.gz
# 1i6lA.t04-thin90.a2m with 470 sequences, total weight= 470 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24912 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i6lA/info/1i6lA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i6lA/nostruct-align/1i6lA.t04-thin90.a2m.gz, have 299146 columns in 1246 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i52A/nostruct-align/1i52A.t04-thin90.a2m.gz
# 1i52A.t04-thin90.a2m with 1688 sequences, total weight= 1688 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00825 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i52A/info/1i52A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i52A/nostruct-align/1i52A.t04-thin90.a2m.gz, have 299371 columns in 1247 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2t/2tgi/nostruct-align/2tgi.t04-thin90.a2m.gz
# 2tgi.t04-thin90.a2m with 275 sequences, total weight= 54.7044 avg weight= 0.198925 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30075 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2t/2tgi/info/2tgi.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2t/2tgi/nostruct-align/2tgi.t04-thin90.a2m.gz, have 299483 columns in 1248 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l3kA/nostruct-align/1l3kA.t04-thin90.a2m.gz
# 1l3kA.t04-thin90.a2m with 1808 sequences, total weight= 1808 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11165 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l3kA/info/1l3kA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l3kA/nostruct-align/1l3kA.t04-thin90.a2m.gz, have 299646 columns in 1249 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qv1A/nostruct-align/1qv1A.t04-thin90.a2m.gz
# 1qv1A.t04-thin90.a2m with 665 sequences, total weight= 665 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08218 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qv1A/info/1qv1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qv1A/nostruct-align/1qv1A.t04-thin90.a2m.gz, have 299833 columns in 1250 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k77A/nostruct-align/1k77A.t04-thin90.a2m.gz
# 1k77A.t04-thin90.a2m with 684 sequences, total weight= 684 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.90569 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k77A/info/1k77A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k77A/nostruct-align/1k77A.t04-thin90.a2m.gz, have 300093 columns in 1251 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rzhM/nostruct-align/1rzhM.t04-thin90.a2m.gz
# 1rzhM.t04-thin90.a2m with 176 sequences, total weight= 16.1736 avg weight= 0.0918952 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rzhM/info/1rzhM.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rzhM/nostruct-align/1rzhM.t04-thin90.a2m.gz, have 300394 columns in 1252 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iu8A/nostruct-align/1iu8A.t04-thin90.a2m.gz
# 1iu8A.t04-thin90.a2m with 86 sequences, total weight= 55.5452 avg weight= 0.645875 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iu8A/info/1iu8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iu8A/nostruct-align/1iu8A.t04-thin90.a2m.gz, have 300600 columns in 1253 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jh6A/nostruct-align/1jh6A.t04-thin90.a2m.gz
# 1jh6A.t04-thin90.a2m with 89 sequences, total weight= 89 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06694 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jh6A/info/1jh6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jh6A/nostruct-align/1jh6A.t04-thin90.a2m.gz, have 300781 columns in 1254 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jl0A/nostruct-align/1jl0A.t04-thin90.a2m.gz
# 1jl0A.t04-thin90.a2m with 57 sequences, total weight= 15.7217 avg weight= 0.27582 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jl0A/info/1jl0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jl0A/nostruct-align/1jl0A.t04-thin90.a2m.gz, have 301091 columns in 1255 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a92A/nostruct-align/1a92A.t04-thin90.a2m.gz
# 1a92A.t04-thin90.a2m with 25 sequences, total weight= 3.22508 avg weight= 0.129003 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a92A/info/1a92A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a92A/nostruct-align/1a92A.t04-thin90.a2m.gz, have 301141 columns in 1256 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t6eX/nostruct-align/1t6eX.t04-thin90.a2m.gz
# 1t6eX.t04-thin90.a2m with 801 sequences, total weight= 801 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18111 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t6eX/info/1t6eX.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t6eX/nostruct-align/1t6eX.t04-thin90.a2m.gz, have 301503 columns in 1257 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q8dA/nostruct-align/1q8dA.t04-thin90.a2m.gz
# 1q8dA.t04-thin90.a2m with 20 sequences, total weight= 4.64664 avg weight= 0.232332 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q8dA/info/1q8dA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q8dA/nostruct-align/1q8dA.t04-thin90.a2m.gz, have 301603 columns in 1258 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o08A/nostruct-align/1o08A.t04-thin90.a2m.gz
# 1o08A.t04-thin90.a2m with 2244 sequences, total weight= 2244 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.81674 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o08A/info/1o08A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o08A/nostruct-align/1o08A.t04-thin90.a2m.gz, have 301824 columns in 1259 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dbxA/nostruct-align/1dbxA.t04-thin90.a2m.gz
# 1dbxA.t04-thin90.a2m with 276 sequences, total weight= 276 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22379 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dbxA/info/1dbxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dbxA/nostruct-align/1dbxA.t04-thin90.a2m.gz, have 301976 columns in 1260 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jbeA/nostruct-align/1jbeA.t04-thin90.a2m.gz
# 1jbeA.t04-thin90.a2m with 2403 sequences, total weight= 166.37 avg weight= 0.0692342 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.34024 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jbeA/info/1jbeA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jbeA/nostruct-align/1jbeA.t04-thin90.a2m.gz, have 302102 columns in 1261 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jubA/nostruct-align/1jubA.t04-thin90.a2m.gz
# 1jubA.t04-thin90.a2m with 2078 sequences, total weight= 2078 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.935164 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jubA/info/1jubA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jubA/nostruct-align/1jubA.t04-thin90.a2m.gz, have 302413 columns in 1262 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oflA/nostruct-align/1oflA.t04-thin90.a2m.gz
# 1oflA.t04-thin90.a2m with 452 sequences, total weight= 452 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01226 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oflA/info/1oflA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oflA/nostruct-align/1oflA.t04-thin90.a2m.gz, have 302894 columns in 1263 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhnA/nostruct-align/1vhnA.t04-thin90.a2m.gz
# 1vhnA.t04-thin90.a2m with 1854 sequences, total weight= 1854 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.931411 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhnA/info/1vhnA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vhnA/nostruct-align/1vhnA.t04-thin90.a2m.gz, have 303199 columns in 1264 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lyqA/nostruct-align/1lyqA.t04-thin90.a2m.gz
# 1lyqA.t04-thin90.a2m with 55 sequences, total weight= 24.3753 avg weight= 0.443188 42 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lyqA/info/1lyqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lyqA/nostruct-align/1lyqA.t04-thin90.a2m.gz, have 303300 columns in 1265 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r29A/nostruct-align/1r29A.t04-thin90.a2m.gz
# 1r29A.t04-thin90.a2m with 872 sequences, total weight= 872 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05146 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r29A/info/1r29A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r29A/nostruct-align/1r29A.t04-thin90.a2m.gz, have 303422 columns in 1266 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rwjA/nostruct-align/1rwjA.t04-thin90.a2m.gz
# 1rwjA.t04-thin90.a2m with 44 sequences, total weight= 9.85067 avg weight= 0.223879 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rwjA/info/1rwjA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rwjA/nostruct-align/1rwjA.t04-thin90.a2m.gz, have 303503 columns in 1267 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dmgA/nostruct-align/1dmgA.t04-thin90.a2m.gz
# 1dmgA.t04-thin90.a2m with 196 sequences, total weight= 77.774 avg weight= 0.396806 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dmgA/info/1dmgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dmgA/nostruct-align/1dmgA.t04-thin90.a2m.gz, have 303675 columns in 1268 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ofzA/nostruct-align/1ofzA.t04-thin90.a2m.gz
# 1ofzA.t04-thin90.a2m with 30 sequences, total weight= 30 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03362 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ofzA/info/1ofzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ofzA/nostruct-align/1ofzA.t04-thin90.a2m.gz, have 303987 columns in 1269 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s5uA/nostruct-align/1s5uA.t04-thin90.a2m.gz
# 1s5uA.t04-thin90.a2m with 630 sequences, total weight= 630 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.947326 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s5uA/info/1s5uA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s5uA/nostruct-align/1s5uA.t04-thin90.a2m.gz, have 304116 columns in 1270 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gs9A/nostruct-align/1gs9A.t04-thin90.a2m.gz
# 1gs9A.t04-thin90.a2m with 43 sequences, total weight= 22.6911 avg weight= 0.5277 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gs9A/info/1gs9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gs9A/nostruct-align/1gs9A.t04-thin90.a2m.gz, have 304260 columns in 1271 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pg6A/nostruct-align/1pg6A.t04-thin90.a2m.gz
# 1pg6A.t04-thin90.a2m with 108 sequences, total weight= 102.068 avg weight= 0.945073 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pg6A/info/1pg6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pg6A/nostruct-align/1pg6A.t04-thin90.a2m.gz, have 304476 columns in 1272 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hqsA/nostruct-align/1hqsA.t04-thin90.a2m.gz
# 1hqsA.t04-thin90.a2m with 470 sequences, total weight= 57.3703 avg weight= 0.122064 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3005 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hqsA/info/1hqsA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hqsA/nostruct-align/1hqsA.t04-thin90.a2m.gz, have 304899 columns in 1273 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1ny1A/nostruct-align/1ny1A.t04-thin90.a2m.gz
# 1ny1A.t04-thin90.a2m with 582 sequences, total weight= 582 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.924533 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1ny1A/info/1ny1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1ny1A/nostruct-align/1ny1A.t04-thin90.a2m.gz, have 305134 columns in 1274 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1ntyA/nostruct-align/1ntyA.t04-thin90.a2m.gz
# 1ntyA.t04-thin90.a2m with 550 sequences, total weight= 550 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00416 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1ntyA/info/1ntyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1ntyA/nostruct-align/1ntyA.t04-thin90.a2m.gz, have 305439 columns in 1275 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o1yA/nostruct-align/1o1yA.t04-thin90.a2m.gz
# 1o1yA.t04-thin90.a2m with 1844 sequences, total weight= 1844 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.933591 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o1yA/info/1o1yA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o1yA/nostruct-align/1o1yA.t04-thin90.a2m.gz, have 305669 columns in 1276 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hyp/nostruct-align/1hyp.t04-thin90.a2m.gz
# 1hyp.t04-thin90.a2m with 75 sequences, total weight= 6.03108 avg weight= 0.0804143 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hyp/info/1hyp.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hyp/nostruct-align/1hyp.t04-thin90.a2m.gz, have 305744 columns in 1277 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1izcA/nostruct-align/1izcA.t04-thin90.a2m.gz
# 1izcA.t04-thin90.a2m with 848 sequences, total weight= 848 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12935 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1izcA/info/1izcA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1izcA/nostruct-align/1izcA.t04-thin90.a2m.gz, have 306043 columns in 1278 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k8uA/nostruct-align/1k8uA.t04-thin90.a2m.gz
# 1k8uA.t04-thin90.a2m with 101 sequences, total weight= 25.3497 avg weight= 0.250987 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k8uA/info/1k8uA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k8uA/nostruct-align/1k8uA.t04-thin90.a2m.gz, have 306132 columns in 1279 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ig0A/nostruct-align/1ig0A.t04-thin90.a2m.gz
# 1ig0A.t04-thin90.a2m with 73 sequences, total weight= 73 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18075 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ig0A/info/1ig0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ig0A/nostruct-align/1ig0A.t04-thin90.a2m.gz, have 306449 columns in 1280 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1ddwA/nostruct-align/1ddwA.t04-thin90.a2m.gz
# 1ddwA.t04-thin90.a2m with 23 sequences, total weight= 8.3302 avg weight= 0.362183 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1ddwA/info/1ddwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1ddwA/nostruct-align/1ddwA.t04-thin90.a2m.gz, have 306560 columns in 1281 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1arb/nostruct-align/1arb.t04-thin90.a2m.gz
# 1arb.t04-thin90.a2m with 537 sequences, total weight= 537 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1671 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1arb/info/1arb.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1arb/nostruct-align/1arb.t04-thin90.a2m.gz, have 306823 columns in 1282 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fi2A/nostruct-align/1fi2A.t04-thin90.a2m.gz
# 1fi2A.t04-thin90.a2m with 659 sequences, total weight= 659 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02192 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fi2A/info/1fi2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fi2A/nostruct-align/1fi2A.t04-thin90.a2m.gz, have 307024 columns in 1283 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jyaA/nostruct-align/1jyaA.t04-thin90.a2m.gz
# 1jyaA.t04-thin90.a2m with 6 sequences, total weight= 6 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24331 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jyaA/info/1jyaA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jyaA/nostruct-align/1jyaA.t04-thin90.a2m.gz, have 307141 columns in 1284 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dljA/nostruct-align/1dljA.t04-thin90.a2m.gz
# 1dljA.t04-thin90.a2m with 1949 sequences, total weight= 1949 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.956286 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dljA/info/1dljA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dljA/nostruct-align/1dljA.t04-thin90.a2m.gz, have 307543 columns in 1285 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i19A/nostruct-align/1i19A.t04-thin90.a2m.gz
# 1i19A.t04-thin90.a2m with 964 sequences, total weight= 964 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.864606 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i19A/info/1i19A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i19A/nostruct-align/1i19A.t04-thin90.a2m.gz, have 308084 columns in 1286 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vmeA/nostruct-align/1vmeA.t04-thin90.a2m.gz
# 1vmeA.t04-thin90.a2m with 2158 sequences, total weight= 2158 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.872634 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vmeA/info/1vmeA.stride-mixed.near-backbone-11
WARNING: skipping f, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vmeA/nostruct-align/1vmeA.t04-thin90.a2m.gz, have 308485 columns in 1287 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1go3E/nostruct-align/1go3E.t04-thin90.a2m.gz
# 1go3E.t04-thin90.a2m with 674 sequences, total weight= 674 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18224 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1go3E/info/1go3E.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1go3E/nostruct-align/1go3E.t04-thin90.a2m.gz, have 308662 columns in 1288 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fo8A/nostruct-align/1fo8A.t04-thin90.a2m.gz
# 1fo8A.t04-thin90.a2m with 1513 sequences, total weight= 1513 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.863225 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fo8A/info/1fo8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fo8A/nostruct-align/1fo8A.t04-thin90.a2m.gz, have 308992 columns in 1289 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bdo/nostruct-align/1bdo.t04-thin90.a2m.gz
# 1bdo.t04-thin90.a2m with 368 sequences, total weight= 29.6019 avg weight= 0.08044 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bdo/info/1bdo.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bdo/nostruct-align/1bdo.t04-thin90.a2m.gz, have 309072 columns in 1290 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ukkA/nostruct-align/1ukkA.t04-thin90.a2m.gz
# 1ukkA.t04-thin90.a2m with 274 sequences, total weight= 274 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11967 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ukkA/info/1ukkA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ukkA/nostruct-align/1ukkA.t04-thin90.a2m.gz, have 309213 columns in 1291 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m15A/nostruct-align/1m15A.t04-thin90.a2m.gz
# 1m15A.t04-thin90.a2m with 121 sequences, total weight= 19.142 avg weight= 0.158198 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m15A/info/1m15A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m15A/nostruct-align/1m15A.t04-thin90.a2m.gz, have 309569 columns in 1292 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bkrA/nostruct-align/1bkrA.t04-thin90.a2m.gz
# 1bkrA.t04-thin90.a2m with 305 sequences, total weight= 305 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28614 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bkrA/info/1bkrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bkrA/nostruct-align/1bkrA.t04-thin90.a2m.gz, have 309677 columns in 1293 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qlwA/nostruct-align/1qlwA.t04-thin90.a2m.gz
# 1qlwA.t04-thin90.a2m with 2367 sequences, total weight= 2367 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.79703 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qlwA/info/1qlwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qlwA/nostruct-align/1qlwA.t04-thin90.a2m.gz, have 309995 columns in 1294 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t6cA/nostruct-align/1t6cA.t04-thin90.a2m.gz
# 1t6cA.t04-thin90.a2m with 1353 sequences, total weight= 1353 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06941 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t6cA/info/1t6cA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t6cA/nostruct-align/1t6cA.t04-thin90.a2m.gz, have 310301 columns in 1295 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o7nA/nostruct-align/1o7nA.t04-thin90.a2m.gz
# 1o7nA.t04-thin90.a2m with 716 sequences, total weight= 716 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.945927 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o7nA/info/1o7nA.stride-mixed.near-backbone-11
WARNING: skipping h, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o7nA/nostruct-align/1o7nA.t04-thin90.a2m.gz, have 310748 columns in 1296 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bx7/nostruct-align/1bx7.t04-thin90.a2m.gz
# 1bx7.t04-thin90.a2m with 4 sequences, total weight= 2.31227 avg weight= 0.578067 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bx7/info/1bx7.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bx7/nostruct-align/1bx7.t04-thin90.a2m.gz, have 310799 columns in 1297 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j5xA/nostruct-align/1j5xA.t04-thin90.a2m.gz
# 1j5xA.t04-thin90.a2m with 928 sequences, total weight= 928 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0593 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j5xA/info/1j5xA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j5xA/nostruct-align/1j5xA.t04-thin90.a2m.gz, have 311118 columns in 1298 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1elkA/nostruct-align/1elkA.t04-thin90.a2m.gz
# 1elkA.t04-thin90.a2m with 112 sequences, total weight= 112 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2804 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1elkA/info/1elkA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1elkA/nostruct-align/1elkA.t04-thin90.a2m.gz, have 311271 columns in 1299 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1ak0/nostruct-align/1ak0.t04-thin90.a2m.gz
# 1ak0.t04-thin90.a2m with 55 sequences, total weight= 55 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23947 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1ak0/info/1ak0.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1ak0/nostruct-align/1ak0.t04-thin90.a2m.gz, have 311535 columns in 1300 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/25/256bA/nostruct-align/256bA.t04-thin90.a2m.gz
# 256bA.t04-thin90.a2m with 8 sequences, total weight= 5.63598 avg weight= 0.704498 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/25/256bA/info/256bA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/25/256bA/nostruct-align/256bA.t04-thin90.a2m.gz, have 311641 columns in 1301 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r8sA/nostruct-align/1r8sA.t04-thin90.a2m.gz
# 1r8sA.t04-thin90.a2m with 1276 sequences, total weight= 224.977 avg weight= 0.176314 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32514 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r8sA/info/1r8sA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r8sA/nostruct-align/1r8sA.t04-thin90.a2m.gz, have 311801 columns in 1302 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q2hA/nostruct-align/1q2hA.t04-thin90.a2m.gz
# 1q2hA.t04-thin90.a2m with 10 sequences, total weight= 5.08957 avg weight= 0.508957 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q2hA/info/1q2hA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q2hA/nostruct-align/1q2hA.t04-thin90.a2m.gz, have 311864 columns in 1303 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1edg/nostruct-align/1edg.t04-thin90.a2m.gz
# 1edg.t04-thin90.a2m with 1367 sequences, total weight= 1367 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.836528 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1edg/info/1edg.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1edg/nostruct-align/1edg.t04-thin90.a2m.gz, have 312244 columns in 1304 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rgxA/nostruct-align/1rgxA.t04-thin90.a2m.gz
# 1rgxA.t04-thin90.a2m with 14 sequences, total weight= 3.45256 avg weight= 0.246611 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rgxA/info/1rgxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rgxA/nostruct-align/1rgxA.t04-thin90.a2m.gz, have 312333 columns in 1305 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cnzA/nostruct-align/1cnzA.t04-thin90.a2m.gz
# 1cnzA.t04-thin90.a2m with 506 sequences, total weight= 46.2166 avg weight= 0.0913372 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cnzA/info/1cnzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cnzA/nostruct-align/1cnzA.t04-thin90.a2m.gz, have 312696 columns in 1306 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k4nA/nostruct-align/1k4nA.t04-thin90.a2m.gz
# 1k4nA.t04-thin90.a2m with 19 sequences, total weight= 8.36616 avg weight= 0.440324 25 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k4nA/info/1k4nA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k4nA/nostruct-align/1k4nA.t04-thin90.a2m.gz, have 312879 columns in 1307 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gxrA/nostruct-align/1gxrA.t04-thin90.a2m.gz
# 1gxrA.t04-thin90.a2m with 2061 sequences, total weight= 2061 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.925827 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gxrA/info/1gxrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gxrA/nostruct-align/1gxrA.t04-thin90.a2m.gz, have 313214 columns in 1308 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qv9A/nostruct-align/1qv9A.t04-thin90.a2m.gz
# 1qv9A.t04-thin90.a2m with 9 sequences, total weight= 3.45398 avg weight= 0.383775 13 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qv9A/info/1qv9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qv9A/nostruct-align/1qv9A.t04-thin90.a2m.gz, have 313496 columns in 1309 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2d/2dpmA/nostruct-align/2dpmA.t04-thin90.a2m.gz
# 2dpmA.t04-thin90.a2m with 167 sequences, total weight= 167 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13384 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2d/2dpmA/info/2dpmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2d/2dpmA/nostruct-align/2dpmA.t04-thin90.a2m.gz, have 313754 columns in 1310 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o7nB/nostruct-align/1o7nB.t04-thin90.a2m.gz
# 1o7nB.t04-thin90.a2m with 152 sequences, total weight= 152 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20611 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o7nB/info/1o7nB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o7nB/nostruct-align/1o7nB.t04-thin90.a2m.gz, have 313947 columns in 1311 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e42A/nostruct-align/1e42A.t04-thin90.a2m.gz
# 1e42A.t04-thin90.a2m with 14 sequences, total weight= 7.37033 avg weight= 0.526452 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e42A/info/1e42A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e42A/nostruct-align/1e42A.t04-thin90.a2m.gz, have 314180 columns in 1312 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t56A/nostruct-align/1t56A.t04-thin90.a2m.gz
# 1t56A.t04-thin90.a2m with 2409 sequences, total weight= 2409 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.790721 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t56A/info/1t56A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t56A/nostruct-align/1t56A.t04-thin90.a2m.gz, have 314373 columns in 1313 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rwrA/nostruct-align/1rwrA.t04-thin90.a2m.gz
# 1rwrA.t04-thin90.a2m with 74 sequences, total weight= 21.8862 avg weight= 0.29576 42 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rwrA/info/1rwrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rwrA/nostruct-align/1rwrA.t04-thin90.a2m.gz, have 314670 columns in 1314 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oqjA/nostruct-align/1oqjA.t04-thin90.a2m.gz
# 1oqjA.t04-thin90.a2m with 28 sequences, total weight= 11.3695 avg weight= 0.406055 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oqjA/info/1oqjA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oqjA/nostruct-align/1oqjA.t04-thin90.a2m.gz, have 314760 columns in 1315 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lmiA/nostruct-align/1lmiA.t04-thin90.a2m.gz
# 1lmiA.t04-thin90.a2m with 3 sequences, total weight= 3 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1765 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lmiA/info/1lmiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lmiA/nostruct-align/1lmiA.t04-thin90.a2m.gz, have 314891 columns in 1316 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fyeA/nostruct-align/1fyeA.t04-thin90.a2m.gz
# 1fyeA.t04-thin90.a2m with 181 sequences, total weight= 181 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0903 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fyeA/info/1fyeA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fyeA/nostruct-align/1fyeA.t04-thin90.a2m.gz, have 315111 columns in 1317 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gp0A/nostruct-align/1gp0A.t04-thin90.a2m.gz
# 1gp0A.t04-thin90.a2m with 217 sequences, total weight= 88.6174 avg weight= 0.408375 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30218 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gp0A/info/1gp0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gp0A/nostruct-align/1gp0A.t04-thin90.a2m.gz, have 315244 columns in 1318 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b5pA/nostruct-align/1b5pA.t04-thin90.a2m.gz
# 1b5pA.t04-thin90.a2m with 2114 sequences, total weight= 2114 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0026 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b5pA/info/1b5pA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1b5pA/nostruct-align/1b5pA.t04-thin90.a2m.gz, have 315626 columns in 1319 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a73A/nostruct-align/1a73A.t04-thin90.a2m.gz
# 1a73A.t04-thin90.a2m with 12 sequences, total weight= 12 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21013 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a73A/info/1a73A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a73A/nostruct-align/1a73A.t04-thin90.a2m.gz, have 315788 columns in 1320 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1no5A/nostruct-align/1no5A.t04-thin90.a2m.gz
# 1no5A.t04-thin90.a2m with 285 sequences, total weight= 285 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01781 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1no5A/info/1no5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1no5A/nostruct-align/1no5A.t04-thin90.a2m.gz, have 315888 columns in 1321 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hfuA/nostruct-align/1hfuA.t04-thin90.a2m.gz
# 1hfuA.t04-thin90.a2m with 688 sequences, total weight= 688 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11392 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hfuA/info/1hfuA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hfuA/nostruct-align/1hfuA.t04-thin90.a2m.gz, have 316388 columns in 1322 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fltX/nostruct-align/1fltX.t04-thin90.a2m.gz
# 1fltX.t04-thin90.a2m with 24 sequences, total weight= 13.4311 avg weight= 0.559628 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fltX/info/1fltX.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fltX/nostruct-align/1fltX.t04-thin90.a2m.gz, have 316483 columns in 1323 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oxxK/nostruct-align/1oxxK.t04-thin90.a2m.gz
# 1oxxK.t04-thin90.a2m with 2452 sequences, total weight= 89.1491 avg weight= 0.0363577 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31877 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oxxK/info/1oxxK.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oxxK/nostruct-align/1oxxK.t04-thin90.a2m.gz, have 316835 columns in 1324 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f9yA/nostruct-align/1f9yA.t04-thin90.a2m.gz
# 1f9yA.t04-thin90.a2m with 176 sequences, total weight= 30.8796 avg weight= 0.175452 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f9yA/info/1f9yA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f9yA/nostruct-align/1f9yA.t04-thin90.a2m.gz, have 316993 columns in 1325 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a6m/nostruct-align/1a6m.t04-thin90.a2m.gz
# 1a6m.t04-thin90.a2m with 778 sequences, total weight= 778 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27311 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a6m/info/1a6m.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a6m/nostruct-align/1a6m.t04-thin90.a2m.gz, have 317144 columns in 1326 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3e/3ezmA/nostruct-align/3ezmA.t04-thin90.a2m.gz
# 3ezmA.t04-thin90.a2m with 4 sequences, total weight= 3.93864 avg weight= 0.98466 8 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3e/3ezmA/info/3ezmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/3e/3ezmA/nostruct-align/3ezmA.t04-thin90.a2m.gz, have 317245 columns in 1327 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fl0A/nostruct-align/1fl0A.t04-thin90.a2m.gz
# 1fl0A.t04-thin90.a2m with 325 sequences, total weight= 94.1767 avg weight= 0.289775 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30148 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fl0A/info/1fl0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fl0A/nostruct-align/1fl0A.t04-thin90.a2m.gz, have 317409 columns in 1328 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lycA/nostruct-align/1lycA.t04-thin90.a2m.gz
# 1lycA.t04-thin90.a2m with 614 sequences, total weight= 114.205 avg weight= 0.186002 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30255 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lycA/info/1lycA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lycA/nostruct-align/1lycA.t04-thin90.a2m.gz, have 317745 columns in 1329 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h05A/nostruct-align/1h05A.t04-thin90.a2m.gz
# 1h05A.t04-thin90.a2m with 129 sequences, total weight= 9.1529 avg weight= 0.0709527 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h05A/info/1h05A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h05A/nostruct-align/1h05A.t04-thin90.a2m.gz, have 317883 columns in 1330 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p9hA/nostruct-align/1p9hA.t04-thin90.a2m.gz
# 1p9hA.t04-thin90.a2m with 354 sequences, total weight= 253.378 avg weight= 0.715756 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30074 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p9hA/info/1p9hA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p9hA/nostruct-align/1p9hA.t04-thin90.a2m.gz, have 318062 columns in 1331 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ewfA/nostruct-align/1ewfA.t04-thin90.a2m.gz
# 1ewfA.t04-thin90.a2m with 89 sequences, total weight= 89 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11658 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ewfA/info/1ewfA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ewfA/nostruct-align/1ewfA.t04-thin90.a2m.gz, have 318518 columns in 1332 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r6wA/nostruct-align/1r6wA.t04-thin90.a2m.gz
# 1r6wA.t04-thin90.a2m with 731 sequences, total weight= 731 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18476 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r6wA/info/1r6wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r6wA/nostruct-align/1r6wA.t04-thin90.a2m.gz, have 318839 columns in 1333 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kptA/nostruct-align/1kptA.t04-thin90.a2m.gz
# 1kptA.t04-thin90.a2m with 7 sequences, total weight= 3.89767 avg weight= 0.55681 14 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kptA/info/1kptA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kptA/nostruct-align/1kptA.t04-thin90.a2m.gz, have 318944 columns in 1334 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i0lA/nostruct-align/1i0lA.t04-thin90.a2m.gz
# 1i0lA.t04-thin90.a2m with 1540 sequences, total weight= 1540 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.981066 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i0lA/info/1i0lA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i0lA/nostruct-align/1i0lA.t04-thin90.a2m.gz, have 319136 columns in 1335 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mwqA/nostruct-align/1mwqA.t04-thin90.a2m.gz
# 1mwqA.t04-thin90.a2m with 112 sequences, total weight= 65.829 avg weight= 0.587759 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mwqA/info/1mwqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mwqA/nostruct-align/1mwqA.t04-thin90.a2m.gz, have 319236 columns in 1336 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nvmB/nostruct-align/1nvmB.t04-thin90.a2m.gz
# 1nvmB.t04-thin90.a2m with 1202 sequences, total weight= 1202 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27245 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nvmB/info/1nvmB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nvmB/nostruct-align/1nvmB.t04-thin90.a2m.gz, have 319548 columns in 1337 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nox/nostruct-align/1nox.t04-thin90.a2m.gz
# 1nox.t04-thin90.a2m with 579 sequences, total weight= 579 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.983004 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nox/info/1nox.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nox/nostruct-align/1nox.t04-thin90.a2m.gz, have 319748 columns in 1338 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1onwA/nostruct-align/1onwA.t04-thin90.a2m.gz
# 1onwA.t04-thin90.a2m with 1345 sequences, total weight= 1345 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.888098 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1onwA/info/1onwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1onwA/nostruct-align/1onwA.t04-thin90.a2m.gz, have 320124 columns in 1339 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1smxA/nostruct-align/1smxA.t04-thin90.a2m.gz
# 1smxA.t04-thin90.a2m with 109 sequences, total weight= 9.42979 avg weight= 0.0865118 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1smxA/info/1smxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1smxA/nostruct-align/1smxA.t04-thin90.a2m.gz, have 320211 columns in 1340 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pqhA/nostruct-align/1pqhA.t04-thin90.a2m.gz
# 1pqhA.t04-thin90.a2m with 63 sequences, total weight= 6.81568 avg weight= 0.108185 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pqhA/info/1pqhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pqhA/nostruct-align/1pqhA.t04-thin90.a2m.gz, have 320330 columns in 1341 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jfuA/nostruct-align/1jfuA.t04-thin90.a2m.gz
# 1jfuA.t04-thin90.a2m with 2284 sequences, total weight= 2284 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.937799 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jfuA/info/1jfuA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jfuA/nostruct-align/1jfuA.t04-thin90.a2m.gz, have 320506 columns in 1342 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ijqA/nostruct-align/1ijqA.t04-thin90.a2m.gz
# 1ijqA.t04-thin90.a2m with 1633 sequences, total weight= 1633 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.836217 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ijqA/info/1ijqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ijqA/nostruct-align/1ijqA.t04-thin90.a2m.gz, have 320814 columns in 1343 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1snyA/nostruct-align/1snyA.t04-thin90.a2m.gz
# 1snyA.t04-thin90.a2m with 2324 sequences, total weight= 163.798 avg weight= 0.0704813 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32677 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1snyA/info/1snyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1snyA/nostruct-align/1snyA.t04-thin90.a2m.gz, have 321062 columns in 1344 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fs1B/nostruct-align/1fs1B.t04-thin90.a2m.gz
# 1fs1B.t04-thin90.a2m with 134 sequences, total weight= 41.7162 avg weight= 0.311315 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fs1B/info/1fs1B.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fs1B/nostruct-align/1fs1B.t04-thin90.a2m.gz, have 321178 columns in 1345 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jl1A/nostruct-align/1jl1A.t04-thin90.a2m.gz
# 1jl1A.t04-thin90.a2m with 559 sequences, total weight= 559 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1863 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jl1A/info/1jl1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jl1A/nostruct-align/1jl1A.t04-thin90.a2m.gz, have 321330 columns in 1346 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jpzA/nostruct-align/1jpzA.t04-thin90.a2m.gz
# 1jpzA.t04-thin90.a2m with 1814 sequences, total weight= 1814 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14726 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jpzA/info/1jpzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jpzA/nostruct-align/1jpzA.t04-thin90.a2m.gz, have 321786 columns in 1347 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x6oA/nostruct-align/1x6oA.t04-thin90.a2m.gz
# 1x6oA.t04-thin90.a2m with 76 sequences, total weight= 15.5827 avg weight= 0.205035 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x6oA/info/1x6oA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1x/1x6oA/nostruct-align/1x6oA.t04-thin90.a2m.gz, have 321929 columns in 1348 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2t/2tnfA/nostruct-align/2tnfA.t04-thin90.a2m.gz
# 2tnfA.t04-thin90.a2m with 85 sequences, total weight= 36.5238 avg weight= 0.429692 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2t/2tnfA/info/2tnfA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2t/2tnfA/nostruct-align/2tnfA.t04-thin90.a2m.gz, have 322077 columns in 1349 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d4xG/nostruct-align/1d4xG.t04-thin90.a2m.gz
# 1d4xG.t04-thin90.a2m with 301 sequences, total weight= 301 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08446 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d4xG/info/1d4xG.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d4xG/nostruct-align/1d4xG.t04-thin90.a2m.gz, have 322201 columns in 1350 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hm9A/nostruct-align/1hm9A.t04-thin90.a2m.gz
# 1hm9A.t04-thin90.a2m with 2181 sequences, total weight= 2181 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0816 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hm9A/info/1hm9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hm9A/nostruct-align/1hm9A.t04-thin90.a2m.gz, have 322659 columns in 1351 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1orrA/nostruct-align/1orrA.t04-thin90.a2m.gz
# 1orrA.t04-thin90.a2m with 2117 sequences, total weight= 2117 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07692 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1orrA/info/1orrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1orrA/nostruct-align/1orrA.t04-thin90.a2m.gz, have 322997 columns in 1352 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gqnA/nostruct-align/1gqnA.t04-thin90.a2m.gz
# 1gqnA.t04-thin90.a2m with 83 sequences, total weight= 83 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23418 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gqnA/info/1gqnA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gqnA/nostruct-align/1gqnA.t04-thin90.a2m.gz, have 323249 columns in 1353 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rtqA/nostruct-align/1rtqA.t04-thin90.a2m.gz
# 1rtqA.t04-thin90.a2m with 1356 sequences, total weight= 1356 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.863837 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rtqA/info/1rtqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rtqA/nostruct-align/1rtqA.t04-thin90.a2m.gz, have 323540 columns in 1354 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cy5A/nostruct-align/1cy5A.t04-thin90.a2m.gz
# 1cy5A.t04-thin90.a2m with 5 sequences, total weight= 2.89041 avg weight= 0.578082 8 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cy5A/info/1cy5A.stride-mixed.near-backbone-11
WARNING: skipping f, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cy5A/nostruct-align/1cy5A.t04-thin90.a2m.gz, have 323632 columns in 1355 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1azo/nostruct-align/1azo.t04-thin90.a2m.gz
# 1azo.t04-thin90.a2m with 25 sequences, total weight= 19.8433 avg weight= 0.793733 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1azo/info/1azo.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1azo/nostruct-align/1azo.t04-thin90.a2m.gz, have 323846 columns in 1356 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m4lA/nostruct-align/1m4lA.t04-thin90.a2m.gz
# 1m4lA.t04-thin90.a2m with 389 sequences, total weight= 389 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04079 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m4lA/info/1m4lA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m4lA/nostruct-align/1m4lA.t04-thin90.a2m.gz, have 324153 columns in 1357 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r2mA/nostruct-align/1r2mA.t04-thin90.a2m.gz
# 1r2mA.t04-thin90.a2m with 19 sequences, total weight= 4.1189 avg weight= 0.216784 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r2mA/info/1r2mA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r2mA/nostruct-align/1r2mA.t04-thin90.a2m.gz, have 324223 columns in 1358 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g6sA/nostruct-align/1g6sA.t04-thin90.a2m.gz
# 1g6sA.t04-thin90.a2m with 397 sequences, total weight= 80.2686 avg weight= 0.202188 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30169 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g6sA/info/1g6sA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g6sA/nostruct-align/1g6sA.t04-thin90.a2m.gz, have 324650 columns in 1359 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j79A/nostruct-align/1j79A.t04-thin90.a2m.gz
# 1j79A.t04-thin90.a2m with 604 sequences, total weight= 604 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.968897 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j79A/info/1j79A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j79A/nostruct-align/1j79A.t04-thin90.a2m.gz, have 324993 columns in 1360 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gu7A/nostruct-align/1gu7A.t04-thin90.a2m.gz
# 1gu7A.t04-thin90.a2m with 1991 sequences, total weight= 1991 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18869 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gu7A/info/1gu7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gu7A/nostruct-align/1gu7A.t04-thin90.a2m.gz, have 325357 columns in 1361 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ryaA/nostruct-align/1ryaA.t04-thin90.a2m.gz
# 1ryaA.t04-thin90.a2m with 1698 sequences, total weight= 1698 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.798469 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ryaA/info/1ryaA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1ryaA/nostruct-align/1ryaA.t04-thin90.a2m.gz, have 325517 columns in 1362 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rkqA/nostruct-align/1rkqA.t04-thin90.a2m.gz
# 1rkqA.t04-thin90.a2m with 2044 sequences, total weight= 2044 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.968655 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rkqA/info/1rkqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rkqA/nostruct-align/1rkqA.t04-thin90.a2m.gz, have 325788 columns in 1363 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e29A/nostruct-align/1e29A.t04-thin90.a2m.gz
# 1e29A.t04-thin90.a2m with 259 sequences, total weight= 249.822 avg weight= 0.964564 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e29A/info/1e29A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e29A/nostruct-align/1e29A.t04-thin90.a2m.gz, have 325923 columns in 1364 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k3iA/nostruct-align/1k3iA.t04-thin90.a2m.gz
# 1k3iA.t04-thin90.a2m with 949 sequences, total weight= 949 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.924811 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k3iA/info/1k3iA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k3iA/nostruct-align/1k3iA.t04-thin90.a2m.gz, have 326574 columns in 1365 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g2nA/nostruct-align/1g2nA.t04-thin90.a2m.gz
# 1g2nA.t04-thin90.a2m with 740 sequences, total weight= 740 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.804852 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g2nA/info/1g2nA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g2nA/nostruct-align/1g2nA.t04-thin90.a2m.gz, have 326820 columns in 1366 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qddA/nostruct-align/1qddA.t04-thin90.a2m.gz
# 1qddA.t04-thin90.a2m with 1321 sequences, total weight= 1321 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.973046 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qddA/info/1qddA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qddA/nostruct-align/1qddA.t04-thin90.a2m.gz, have 326964 columns in 1367 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jo8A/nostruct-align/1jo8A.t04-thin90.a2m.gz
# 1jo8A.t04-thin90.a2m with 976 sequences, total weight= 121.817 avg weight= 0.124812 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31744 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jo8A/info/1jo8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jo8A/nostruct-align/1jo8A.t04-thin90.a2m.gz, have 327022 columns in 1368 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2c/2cuaA/nostruct-align/2cuaA.t04-thin90.a2m.gz
# 2cuaA.t04-thin90.a2m with 368 sequences, total weight= 5.07572 avg weight= 0.0137927 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2c/2cuaA/info/2cuaA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2c/2cuaA/nostruct-align/2cuaA.t04-thin90.a2m.gz, have 327144 columns in 1369 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h80A/nostruct-align/1h80A.t04-thin90.a2m.gz
# 1h80A.t04-thin90.a2m with 541 sequences, total weight= 541 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.930057 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h80A/info/1h80A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h80A/nostruct-align/1h80A.t04-thin90.a2m.gz, have 327577 columns in 1370 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sqsA/nostruct-align/1sqsA.t04-thin90.a2m.gz
# 1sqsA.t04-thin90.a2m with 896 sequences, total weight= 896 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.994217 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sqsA/info/1sqsA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sqsA/nostruct-align/1sqsA.t04-thin90.a2m.gz, have 327809 columns in 1371 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ix9A/nostruct-align/1ix9A.t04-thin90.a2m.gz
# 1ix9A.t04-thin90.a2m with 466 sequences, total weight= 27.2267 avg weight= 0.0584265 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ix9A/info/1ix9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ix9A/nostruct-align/1ix9A.t04-thin90.a2m.gz, have 328014 columns in 1372 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i4jA/nostruct-align/1i4jA.t04-thin90.a2m.gz
# 1i4jA.t04-thin90.a2m with 237 sequences, total weight= 37.9604 avg weight= 0.16017 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i4jA/info/1i4jA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i4jA/nostruct-align/1i4jA.t04-thin90.a2m.gz, have 328124 columns in 1373 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ornA/nostruct-align/1ornA.t04-thin90.a2m.gz
# 1ornA.t04-thin90.a2m with 536 sequences, total weight= 536 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1297 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ornA/info/1ornA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ornA/nostruct-align/1ornA.t04-thin90.a2m.gz, have 328338 columns in 1374 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o5kA/nostruct-align/1o5kA.t04-thin90.a2m.gz
# 1o5kA.t04-thin90.a2m with 476 sequences, total weight= 476 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22444 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o5kA/info/1o5kA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o5kA/nostruct-align/1o5kA.t04-thin90.a2m.gz, have 328633 columns in 1375 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e87A/nostruct-align/1e87A.t04-thin90.a2m.gz
# 1e87A.t04-thin90.a2m with 1215 sequences, total weight= 1215 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01437 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e87A/info/1e87A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e87A/nostruct-align/1e87A.t04-thin90.a2m.gz, have 328750 columns in 1376 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kjqA/nostruct-align/1kjqA.t04-thin90.a2m.gz
# 1kjqA.t04-thin90.a2m with 1704 sequences, total weight= 1704 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02832 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kjqA/info/1kjqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kjqA/nostruct-align/1kjqA.t04-thin90.a2m.gz, have 329138 columns in 1377 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jsdA/nostruct-align/1jsdA.t04-thin90.a2m.gz
# 1jsdA.t04-thin90.a2m with 57 sequences, total weight= 8.48373 avg weight= 0.148837 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jsdA/info/1jsdA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jsdA/nostruct-align/1jsdA.t04-thin90.a2m.gz, have 329455 columns in 1378 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tif/nostruct-align/1tif.t04-thin90.a2m.gz
# 1tif.t04-thin90.a2m with 129 sequences, total weight= 9.6067 avg weight= 0.0744705 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tif/info/1tif.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tif/nostruct-align/1tif.t04-thin90.a2m.gz, have 329531 columns in 1379 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dqpA/nostruct-align/1dqpA.t04-thin90.a2m.gz
# 1dqpA.t04-thin90.a2m with 1383 sequences, total weight= 1383 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00156 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dqpA/info/1dqpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dqpA/nostruct-align/1dqpA.t04-thin90.a2m.gz, have 329761 columns in 1380 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qveA/nostruct-align/1qveA.t04-thin90.a2m.gz
# 1qveA.t04-thin90.a2m with 158 sequences, total weight= 34.2322 avg weight= 0.216659 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qveA/info/1qveA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qveA/nostruct-align/1qveA.t04-thin90.a2m.gz, have 329887 columns in 1381 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ubkS/nostruct-align/1ubkS.t04-thin90.a2m.gz
# 1ubkS.t04-thin90.a2m with 283 sequences, total weight= 83.6964 avg weight= 0.295747 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30059 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ubkS/info/1ubkS.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ubkS/nostruct-align/1ubkS.t04-thin90.a2m.gz, have 330154 columns in 1382 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t2dA/nostruct-align/1t2dA.t04-thin90.a2m.gz
# 1t2dA.t04-thin90.a2m with 1053 sequences, total weight= 1053 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02953 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t2dA/info/1t2dA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t2dA/nostruct-align/1t2dA.t04-thin90.a2m.gz, have 330469 columns in 1383 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2a/2a0b/nostruct-align/2a0b.t04-thin90.a2m.gz
# 2a0b.t04-thin90.a2m with 15 sequences, total weight= 8.11686 avg weight= 0.541124 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2a/2a0b/info/2a0b.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2a/2a0b/nostruct-align/2a0b.t04-thin90.a2m.gz, have 330587 columns in 1384 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cczA/nostruct-align/1cczA.t04-thin90.a2m.gz
# 1cczA.t04-thin90.a2m with 2888 sequences, total weight= 2888 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.98223 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cczA/info/1cczA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cczA/nostruct-align/1cczA.t04-thin90.a2m.gz, have 330758 columns in 1385 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p0zA/nostruct-align/1p0zA.t04-thin90.a2m.gz
# 1p0zA.t04-thin90.a2m with 45 sequences, total weight= 20.7102 avg weight= 0.460226 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p0zA/info/1p0zA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p0zA/nostruct-align/1p0zA.t04-thin90.a2m.gz, have 330889 columns in 1386 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1urrA/nostruct-align/1urrA.t04-thin90.a2m.gz
# 1urrA.t04-thin90.a2m with 182 sequences, total weight= 53.4888 avg weight= 0.293895 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30106 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1urrA/info/1urrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1urrA/nostruct-align/1urrA.t04-thin90.a2m.gz, have 330986 columns in 1387 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o4yA/nostruct-align/1o4yA.t04-thin90.a2m.gz
# 1o4yA.t04-thin90.a2m with 370 sequences, total weight= 370 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07222 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o4yA/info/1o4yA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o4yA/nostruct-align/1o4yA.t04-thin90.a2m.gz, have 331256 columns in 1388 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1guqA/nostruct-align/1guqA.t04-thin90.a2m.gz
# 1guqA.t04-thin90.a2m with 441 sequences, total weight= 441 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19308 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1guqA/info/1guqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1guqA/nostruct-align/1guqA.t04-thin90.a2m.gz, have 331603 columns in 1389 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1ju3A/nostruct-align/1ju3A.t04-thin90.a2m.gz
# 1ju3A.t04-thin90.a2m with 2373 sequences, total weight= 2373 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.960589 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1ju3A/info/1ju3A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1ju3A/nostruct-align/1ju3A.t04-thin90.a2m.gz, have 332173 columns in 1390 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b8oA/nostruct-align/1b8oA.t04-thin90.a2m.gz
# 1b8oA.t04-thin90.a2m with 481 sequences, total weight= 481 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05802 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b8oA/info/1b8oA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1b8oA/nostruct-align/1b8oA.t04-thin90.a2m.gz, have 332453 columns in 1391 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lzlA/nostruct-align/1lzlA.t04-thin90.a2m.gz
# 1lzlA.t04-thin90.a2m with 2042 sequences, total weight= 2042 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.905296 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lzlA/info/1lzlA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lzlA/nostruct-align/1lzlA.t04-thin90.a2m.gz, have 332770 columns in 1392 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vcaA/nostruct-align/1vcaA.t04-thin90.a2m.gz
# 1vcaA.t04-thin90.a2m with 2840 sequences, total weight= 2840 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.941028 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vcaA/info/1vcaA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vcaA/nostruct-align/1vcaA.t04-thin90.a2m.gz, have 332969 columns in 1393 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q6oA/nostruct-align/1q6oA.t04-thin90.a2m.gz
# 1q6oA.t04-thin90.a2m with 953 sequences, total weight= 953 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01359 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q6oA/info/1q6oA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q6oA/nostruct-align/1q6oA.t04-thin90.a2m.gz, have 333182 columns in 1394 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qq9A/nostruct-align/1qq9A.t04-thin90.a2m.gz
# 1qq9A.t04-thin90.a2m with 1325 sequences, total weight= 1325 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.89832 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qq9A/info/1qq9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qq9A/nostruct-align/1qq9A.t04-thin90.a2m.gz, have 333459 columns in 1395 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jo0A/nostruct-align/1jo0A.t04-thin90.a2m.gz
# 1jo0A.t04-thin90.a2m with 75 sequences, total weight= 18.0667 avg weight= 0.240889 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jo0A/info/1jo0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jo0A/nostruct-align/1jo0A.t04-thin90.a2m.gz, have 333556 columns in 1396 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sqeA/nostruct-align/1sqeA.t04-thin90.a2m.gz
# 1sqeA.t04-thin90.a2m with 121 sequences, total weight= 121 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09114 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sqeA/info/1sqeA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sqeA/nostruct-align/1sqeA.t04-thin90.a2m.gz, have 333657 columns in 1397 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jb3A/nostruct-align/1jb3A.t04-thin90.a2m.gz
# 1jb3A.t04-thin90.a2m with 2 sequences, total weight= 1.90803 avg weight= 0.954013 6 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jb3A/info/1jb3A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jb3A/nostruct-align/1jb3A.t04-thin90.a2m.gz, have 333784 columns in 1398 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uasA/nostruct-align/1uasA.t04-thin90.a2m.gz
# 1uasA.t04-thin90.a2m with 259 sequences, total weight= 259 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0151 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uasA/info/1uasA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uasA/nostruct-align/1uasA.t04-thin90.a2m.gz, have 334146 columns in 1399 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hyvA/nostruct-align/1hyvA.t04-thin90.a2m.gz
# 1hyvA.t04-thin90.a2m with 596 sequences, total weight= 596 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28293 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hyvA/info/1hyvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hyvA/nostruct-align/1hyvA.t04-thin90.a2m.gz, have 334290 columns in 1400 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhqA/nostruct-align/1vhqA.t04-thin90.a2m.gz
# 1vhqA.t04-thin90.a2m with 469 sequences, total weight= 469 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15283 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhqA/info/1vhqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vhqA/nostruct-align/1vhqA.t04-thin90.a2m.gz, have 334507 columns in 1401 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e43A/nostruct-align/1e43A.t04-thin90.a2m.gz
# 1e43A.t04-thin90.a2m with 1335 sequences, total weight= 1335 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.979775 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e43A/info/1e43A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e43A/nostruct-align/1e43A.t04-thin90.a2m.gz, have 334990 columns in 1402 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nkpA/nostruct-align/1nkpA.t04-thin90.a2m.gz
# 1nkpA.t04-thin90.a2m with 206 sequences, total weight= 134.207 avg weight= 0.651489 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30298 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nkpA/info/1nkpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nkpA/nostruct-align/1nkpA.t04-thin90.a2m.gz, have 335078 columns in 1403 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iw0A/nostruct-align/1iw0A.t04-thin90.a2m.gz
# 1iw0A.t04-thin90.a2m with 94 sequences, total weight= 90.8593 avg weight= 0.966588 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iw0A/info/1iw0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iw0A/nostruct-align/1iw0A.t04-thin90.a2m.gz, have 335285 columns in 1404 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o6sB/nostruct-align/1o6sB.t04-thin90.a2m.gz
# 1o6sB.t04-thin90.a2m with 2581 sequences, total weight= 2581 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18971 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o6sB/info/1o6sB.stride-mixed.near-backbone-11
WARNING: skipping a, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o6sB/nostruct-align/1o6sB.t04-thin90.a2m.gz, have 335389 columns in 1405 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g8kA/nostruct-align/1g8kA.t04-thin90.a2m.gz
# 1g8kA.t04-thin90.a2m with 780 sequences, total weight= 780 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11527 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g8kA/info/1g8kA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g8kA/nostruct-align/1g8kA.t04-thin90.a2m.gz, have 336211 columns in 1406 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tuaA/nostruct-align/1tuaA.t04-thin90.a2m.gz
# 1tuaA.t04-thin90.a2m with 75 sequences, total weight= 25.492 avg weight= 0.339893 43 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tuaA/info/1tuaA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tuaA/nostruct-align/1tuaA.t04-thin90.a2m.gz, have 336400 columns in 1407 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r26A/nostruct-align/1r26A.t04-thin90.a2m.gz
# 1r26A.t04-thin90.a2m with 2123 sequences, total weight= 2123 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.922131 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r26A/info/1r26A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r26A/nostruct-align/1r26A.t04-thin90.a2m.gz, have 336513 columns in 1408 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mugA/nostruct-align/1mugA.t04-thin90.a2m.gz
# 1mugA.t04-thin90.a2m with 183 sequences, total weight= 183 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.251 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mugA/info/1mugA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mugA/nostruct-align/1mugA.t04-thin90.a2m.gz, have 336678 columns in 1409 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bgf/nostruct-align/1bgf.t04-thin90.a2m.gz
# 1bgf.t04-thin90.a2m with 32 sequences, total weight= 12.7708 avg weight= 0.399086 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bgf/info/1bgf.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bgf/nostruct-align/1bgf.t04-thin90.a2m.gz, have 336802 columns in 1410 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vioA/nostruct-align/1vioA.t04-thin90.a2m.gz
# 1vioA.t04-thin90.a2m with 770 sequences, total weight= 770 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24474 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vioA/info/1vioA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vioA/nostruct-align/1vioA.t04-thin90.a2m.gz, have 337032 columns in 1411 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nf9A/nostruct-align/1nf9A.t04-thin90.a2m.gz
# 1nf9A.t04-thin90.a2m with 486 sequences, total weight= 486 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0841 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nf9A/info/1nf9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nf9A/nostruct-align/1nf9A.t04-thin90.a2m.gz, have 337239 columns in 1412 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ugiA/nostruct-align/1ugiA.t04-thin90.a2m.gz
# 1ugiA.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.584933 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ugiA/info/1ugiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ugiA/nostruct-align/1ugiA.t04-thin90.a2m.gz, have 337322 columns in 1413 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eu1A/nostruct-align/1eu1A.t04-thin90.a2m.gz
# 1eu1A.t04-thin90.a2m with 755 sequences, total weight= 755 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.122 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eu1A/info/1eu1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eu1A/nostruct-align/1eu1A.t04-thin90.a2m.gz, have 338089 columns in 1414 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kr7A/nostruct-align/1kr7A.t04-thin90.a2m.gz
# 1kr7A.t04-thin90.a2m with 2 sequences, total weight= 1.97223 avg weight= 0.986113 6 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kr7A/info/1kr7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kr7A/nostruct-align/1kr7A.t04-thin90.a2m.gz, have 338199 columns in 1415 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hx6A/nostruct-align/1hx6A.t04-thin90.a2m.gz
# 1hx6A.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.583138 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hx6A/info/1hx6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hx6A/nostruct-align/1hx6A.t04-thin90.a2m.gz, have 338569 columns in 1416 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sw5A/nostruct-align/1sw5A.t04-thin90.a2m.gz
# 1sw5A.t04-thin90.a2m with 259 sequences, total weight= 259 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21987 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sw5A/info/1sw5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sw5A/nostruct-align/1sw5A.t04-thin90.a2m.gz, have 338839 columns in 1417 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mqkL/nostruct-align/1mqkL.t04-thin90.a2m.gz
# 1mqkL.t04-thin90.a2m with 1160 sequences, total weight= 8.59054 avg weight= 0.00740564 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mqkL/info/1mqkL.stride-mixed.near-backbone-11
WARNING: skipping d, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mqkL/nostruct-align/1mqkL.t04-thin90.a2m.gz, have 338947 columns in 1418 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1szhA/nostruct-align/1szhA.t04-thin90.a2m.gz
# 1szhA.t04-thin90.a2m with 4 sequences, total weight= 3.41704 avg weight= 0.854261 11 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1szhA/info/1szhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1szhA/nostruct-align/1szhA.t04-thin90.a2m.gz, have 339094 columns in 1419 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i60A/nostruct-align/1i60A.t04-thin90.a2m.gz
# 1i60A.t04-thin90.a2m with 673 sequences, total weight= 673 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.87493 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i60A/info/1i60A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i60A/nostruct-align/1i60A.t04-thin90.a2m.gz, have 339372 columns in 1420 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i12A/nostruct-align/1i12A.t04-thin90.a2m.gz
# 1i12A.t04-thin90.a2m with 2389 sequences, total weight= 2389 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.774923 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i12A/info/1i12A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i12A/nostruct-align/1i12A.t04-thin90.a2m.gz, have 339526 columns in 1421 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kkoA/nostruct-align/1kkoA.t04-thin90.a2m.gz
# 1kkoA.t04-thin90.a2m with 718 sequences, total weight= 718 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20965 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kkoA/info/1kkoA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kkoA/nostruct-align/1kkoA.t04-thin90.a2m.gz, have 339937 columns in 1422 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lqaA/nostruct-align/1lqaA.t04-thin90.a2m.gz
# 1lqaA.t04-thin90.a2m with 1296 sequences, total weight= 1296 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22143 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lqaA/info/1lqaA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lqaA/nostruct-align/1lqaA.t04-thin90.a2m.gz, have 340283 columns in 1423 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pcfA/nostruct-align/1pcfA.t04-thin90.a2m.gz
# 1pcfA.t04-thin90.a2m with 24 sequences, total weight= 9.79416 avg weight= 0.40809 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pcfA/info/1pcfA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pcfA/nostruct-align/1pcfA.t04-thin90.a2m.gz, have 340349 columns in 1424 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r4pA/nostruct-align/1r4pA.t04-thin90.a2m.gz
# 1r4pA.t04-thin90.a2m with 117 sequences, total weight= 117 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25727 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r4pA/info/1r4pA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r4pA/nostruct-align/1r4pA.t04-thin90.a2m.gz, have 340630 columns in 1425 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sqgA/nostruct-align/1sqgA.t04-thin90.a2m.gz
# 1sqgA.t04-thin90.a2m with 2325 sequences, total weight= 2325 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.85002 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sqgA/info/1sqgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sqgA/nostruct-align/1sqgA.t04-thin90.a2m.gz, have 341054 columns in 1426 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h4xA/nostruct-align/1h4xA.t04-thin90.a2m.gz
# 1h4xA.t04-thin90.a2m with 315 sequences, total weight= 315 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.096 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h4xA/info/1h4xA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h4xA/nostruct-align/1h4xA.t04-thin90.a2m.gz, have 341165 columns in 1427 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3e/3eipA/nostruct-align/3eipA.t04-thin90.a2m.gz
# 3eipA.t04-thin90.a2m with 7 sequences, total weight= 2.7786 avg weight= 0.396943 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3e/3eipA/info/3eipA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/3e/3eipA/nostruct-align/3eipA.t04-thin90.a2m.gz, have 341249 columns in 1428 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k94A/nostruct-align/1k94A.t04-thin90.a2m.gz
# 1k94A.t04-thin90.a2m with 1165 sequences, total weight= 1165 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01317 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k94A/info/1k94A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k94A/nostruct-align/1k94A.t04-thin90.a2m.gz, have 341414 columns in 1429 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r62A/nostruct-align/1r62A.t04-thin90.a2m.gz
# 1r62A.t04-thin90.a2m with 2425 sequences, total weight= 386.759 avg weight= 0.159488 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.34291 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r62A/info/1r62A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r62A/nostruct-align/1r62A.t04-thin90.a2m.gz, have 341550 columns in 1430 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ihjA/nostruct-align/1ihjA.t04-thin90.a2m.gz
# 1ihjA.t04-thin90.a2m with 932 sequences, total weight= 932 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23353 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ihjA/info/1ihjA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ihjA/nostruct-align/1ihjA.t04-thin90.a2m.gz, have 341644 columns in 1431 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nofA/nostruct-align/1nofA.t04-thin90.a2m.gz
# 1nofA.t04-thin90.a2m with 167 sequences, total weight= 167 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.923465 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nofA/info/1nofA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nofA/nostruct-align/1nofA.t04-thin90.a2m.gz, have 342027 columns in 1432 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g3p/nostruct-align/1g3p.t04-thin90.a2m.gz
# 1g3p.t04-thin90.a2m with 676 sequences, total weight= 38.8314 avg weight= 0.0574429 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g3p/info/1g3p.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g3p/nostruct-align/1g3p.t04-thin90.a2m.gz, have 342219 columns in 1433 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vdwA/nostruct-align/1vdwA.t04-thin90.a2m.gz
# 1vdwA.t04-thin90.a2m with 596 sequences, total weight= 596 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17717 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vdwA/info/1vdwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vdwA/nostruct-align/1vdwA.t04-thin90.a2m.gz, have 342467 columns in 1434 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q1fA/nostruct-align/1q1fA.t04-thin90.a2m.gz
# 1q1fA.t04-thin90.a2m with 838 sequences, total weight= 838 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22327 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q1fA/info/1q1fA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q1fA/nostruct-align/1q1fA.t04-thin90.a2m.gz, have 342615 columns in 1435 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jakA/nostruct-align/1jakA.t04-thin90.a2m.gz
# 1jakA.t04-thin90.a2m with 188 sequences, total weight= 188 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05266 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jakA/info/1jakA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jakA/nostruct-align/1jakA.t04-thin90.a2m.gz, have 343114 columns in 1436 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1ju2A/nostruct-align/1ju2A.t04-thin90.a2m.gz
# 1ju2A.t04-thin90.a2m with 2193 sequences, total weight= 2193 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.851981 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1ju2A/info/1ju2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1ju2A/nostruct-align/1ju2A.t04-thin90.a2m.gz, have 343635 columns in 1437 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1orc/nostruct-align/1orc.t04-thin90.a2m.gz
# 1orc.t04-thin90.a2m with 3 sequences, total weight= 2.90429 avg weight= 0.968096 7 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1orc/info/1orc.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1orc/nostruct-align/1orc.t04-thin90.a2m.gz, have 343699 columns in 1438 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mhnA/nostruct-align/1mhnA.t04-thin90.a2m.gz
# 1mhnA.t04-thin90.a2m with 45 sequences, total weight= 15.2856 avg weight= 0.33968 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mhnA/info/1mhnA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mhnA/nostruct-align/1mhnA.t04-thin90.a2m.gz, have 343758 columns in 1439 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d2sA/nostruct-align/1d2sA.t04-thin90.a2m.gz
# 1d2sA.t04-thin90.a2m with 508 sequences, total weight= 508 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.96343 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d2sA/info/1d2sA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d2sA/nostruct-align/1d2sA.t04-thin90.a2m.gz, have 343928 columns in 1440 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v7zA/nostruct-align/1v7zA.t04-thin90.a2m.gz
# 1v7zA.t04-thin90.a2m with 78 sequences, total weight= 78 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2895 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v7zA/info/1v7zA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v7zA/nostruct-align/1v7zA.t04-thin90.a2m.gz, have 344185 columns in 1441 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ok0A/nostruct-align/1ok0A.t04-thin90.a2m.gz
# 1ok0A.t04-thin90.a2m with 8 sequences, total weight= 4.00175 avg weight= 0.500218 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ok0A/info/1ok0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ok0A/nostruct-align/1ok0A.t04-thin90.a2m.gz, have 344259 columns in 1442 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jixA/nostruct-align/1jixA.t04-thin90.a2m.gz
# 1jixA.t04-thin90.a2m with 43 sequences, total weight= 43 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.966296 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jixA/info/1jixA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jixA/nostruct-align/1jixA.t04-thin90.a2m.gz, have 344610 columns in 1443 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e4cP/nostruct-align/1e4cP.t04-thin90.a2m.gz
# 1e4cP.t04-thin90.a2m with 305 sequences, total weight= 305 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18865 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e4cP/info/1e4cP.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e4cP/nostruct-align/1e4cP.t04-thin90.a2m.gz, have 344816 columns in 1444 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ezwA/nostruct-align/1ezwA.t04-thin90.a2m.gz
# 1ezwA.t04-thin90.a2m with 638 sequences, total weight= 638 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10078 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ezwA/info/1ezwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ezwA/nostruct-align/1ezwA.t04-thin90.a2m.gz, have 345163 columns in 1445 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f94A/nostruct-align/1f94A.t04-thin90.a2m.gz
# 1f94A.t04-thin90.a2m with 2 sequences, total weight= 1.94772 avg weight= 0.973858 6 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f94A/info/1f94A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f94A/nostruct-align/1f94A.t04-thin90.a2m.gz, have 345226 columns in 1446 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kr4A/nostruct-align/1kr4A.t04-thin90.a2m.gz
# 1kr4A.t04-thin90.a2m with 83 sequences, total weight= 22.6278 avg weight= 0.272624 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kr4A/info/1kr4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kr4A/nostruct-align/1kr4A.t04-thin90.a2m.gz, have 345336 columns in 1447 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ryoA/nostruct-align/1ryoA.t04-thin90.a2m.gz
# 1ryoA.t04-thin90.a2m with 218 sequences, total weight= 77.5614 avg weight= 0.355786 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30059 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ryoA/info/1ryoA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1ryoA/nostruct-align/1ryoA.t04-thin90.a2m.gz, have 345660 columns in 1448 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kxoA/nostruct-align/1kxoA.t04-thin90.a2m.gz
# 1kxoA.t04-thin90.a2m with 292 sequences, total weight= 292 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.914825 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kxoA/info/1kxoA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kxoA/nostruct-align/1kxoA.t04-thin90.a2m.gz, have 345825 columns in 1449 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bu8A/nostruct-align/1bu8A.t04-thin90.a2m.gz
# 1bu8A.t04-thin90.a2m with 2333 sequences, total weight= 2333 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0254 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bu8A/info/1bu8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bu8A/nostruct-align/1bu8A.t04-thin90.a2m.gz, have 346271 columns in 1450 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lvmA/nostruct-align/1lvmA.t04-thin90.a2m.gz
# 1lvmA.t04-thin90.a2m with 628 sequences, total weight= 628 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05745 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lvmA/info/1lvmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lvmA/nostruct-align/1lvmA.t04-thin90.a2m.gz, have 346500 columns in 1451 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gwyA/nostruct-align/1gwyA.t04-thin90.a2m.gz
# 1gwyA.t04-thin90.a2m with 8 sequences, total weight= 2.81125 avg weight= 0.351406 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gwyA/info/1gwyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gwyA/nostruct-align/1gwyA.t04-thin90.a2m.gz, have 346675 columns in 1452 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j24A/nostruct-align/1j24A.t04-thin90.a2m.gz
# 1j24A.t04-thin90.a2m with 72 sequences, total weight= 41.2287 avg weight= 0.572621 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j24A/info/1j24A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j24A/nostruct-align/1j24A.t04-thin90.a2m.gz, have 346808 columns in 1453 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sfxA/nostruct-align/1sfxA.t04-thin90.a2m.gz
# 1sfxA.t04-thin90.a2m with 49 sequences, total weight= 49 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27782 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sfxA/info/1sfxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sfxA/nostruct-align/1sfxA.t04-thin90.a2m.gz, have 346917 columns in 1454 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rhcA/nostruct-align/1rhcA.t04-thin90.a2m.gz
# 1rhcA.t04-thin90.a2m with 663 sequences, total weight= 663 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09328 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rhcA/info/1rhcA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rhcA/nostruct-align/1rhcA.t04-thin90.a2m.gz, have 347247 columns in 1455 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hxhA/nostruct-align/1hxhA.t04-thin90.a2m.gz
# 1hxhA.t04-thin90.a2m with 2373 sequences, total weight= 82.092 avg weight= 0.0345942 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31206 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hxhA/info/1hxhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hxhA/nostruct-align/1hxhA.t04-thin90.a2m.gz, have 347500 columns in 1456 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f32A/nostruct-align/1f32A.t04-thin90.a2m.gz
# 1f32A.t04-thin90.a2m with 14 sequences, total weight= 8.13777 avg weight= 0.581269 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f32A/info/1f32A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f32A/nostruct-align/1f32A.t04-thin90.a2m.gz, have 347627 columns in 1457 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d5tA/nostruct-align/1d5tA.t04-thin90.a2m.gz
# 1d5tA.t04-thin90.a2m with 2123 sequences, total weight= 2123 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.844685 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d5tA/info/1d5tA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d5tA/nostruct-align/1d5tA.t04-thin90.a2m.gz, have 348060 columns in 1458 chains
# command:CPU_time= 2557.9 sec, elapsed time= 2717.13 sec)
# command:# ReportNetQualityForTestTo quality-reports/dunbrack-30pc-1763-t2k-thin90-with-t04-IDGaaH13-3-13-7-13-9-13-11-t1c2-near-backbone-11-from-empty-for-casp.test ok.
# command:# Testing net dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t1c2-near-backbone-11-from-empty.net
# Initializing Gain for near-backbone-11
# Initializing Gain for third_layer
# Initializing Gain for second_layer
# Initializing Gain for FirstLayer
# Network initialization done
# command:CPU_time= 2675.88 sec, elapsed time= 2835.68 sec)
# command: