# command:# Prefix for input files set to 
# command:# Prefix for output files set to 
# command:# Seed set to 1147488313
# command:# Read 5 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/two-spot-burial.alphabet
# command:Unrecognized 1th alphabet rel_sa10 for BackgroundProbs  that has no name
Unrecognized 1th alphabet CB_burial_12_7 for BackgroundProbs  that has no name
Unrecognized 1th alphabet CB_burial_14_7 for BackgroundProbs  that has no name
Unrecognized 1th alphabet abs_sa7 for BackgroundProbs  that has no name
Unrecognized 1th alphabet alpha11 for BackgroundProbs  that has no name
Unrecognized 1th alphabet Bystroff for BackgroundProbs  that has no name
Unrecognized 1th alphabet chi1_3 for BackgroundProbs  that has no name
Unrecognized 1th alphabet dry_burial_6.5_7 for BackgroundProbs  that has no name
Unrecognized 1th alphabet dry_burial_8_7 for BackgroundProbs  that has no name
Unrecognized 1th alphabet dry_burial_12_7 for BackgroundProbs  that has no name
Unrecognized 1th alphabet DSSP for BackgroundProbs  that has no name
Unrecognized 1th alphabet EBGHSTL for BackgroundProbs  that has no name
Unrecognized 1th alphabet str for BackgroundProbs  that has no name
Unrecognized 1th alphabet str2 for BackgroundProbs  that has no name
Unrecognized 1th alphabet dssp_ehl2 for BackgroundProbs  that has no name
Unrecognized 1th alphabet STRIDE for BackgroundProbs  that has no name
Unrecognized 1th alphabet EBGHTL for BackgroundProbs  that has no name
Unrecognized 1th alphabet stride_ehl2 for BackgroundProbs  that has no name
Unrecognized 1th alphabet tco for BackgroundProbs  that has no name
Unrecognized 1th alphabet wet_burial_6.5_7 for BackgroundProbs  that has no name
Unrecognized 1th alphabet pb for BackgroundProbs  that has no name
Unrecognized 1th alphabet gamma_2 for BackgroundProbs  that has no name
Unrecognized 1th alphabet n_sep for BackgroundProbs  that has no name
Unrecognized 1th alphabet o_sep for BackgroundProbs  that has no name
Unrecognized 1th alphabet n_notor for BackgroundProbs  that has no name
Unrecognized 1th alphabet o_notor for BackgroundProbs  that has no name
Unrecognized 1th alphabet n_notor2 for BackgroundProbs  that has no name
Unrecognized 1th alphabet o_notor2 for BackgroundProbs  that has no name
# Read 0 alphabets and 3 BackgroundProbs from /projects/compbio/lib/alphabet/dunbrack-in-scop.backgrounds
# command:CPU_time= 0.004999 sec, elapsed time= 0.021028 sec)
# command:# Neural network set to dunbrack-30pc-1763-t05-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-near-backbone-11-from-empty.net
# command:# command:# Prefix for input files set to /cse/faculty/karplus/dna/predict-2nd/testing/training-data/
# command:# reading script from file dunbrack-in-scop-2005.t05-thin90-near-backbone-11
# Prefix for input files set to 
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/4u/4ubpA/nostruct-align/4ubpA.t05-thin90.a2m.gz
# 4ubpA.t05-thin90.a2m with 104 sequences, total weight= 5.76061 avg weight= 0.0553905 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/4u/4ubpA/info/4ubpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/4u/4ubpA/nostruct-align/4ubpA.t05-thin90.a2m.gz, have 100 columns in 1 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s0aA/nostruct-align/1s0aA.t05-thin90.a2m.gz
# 1s0aA.t05-thin90.a2m with 4395 sequences, total weight= 4395 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.953208 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s0aA/info/1s0aA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s0aA/nostruct-align/1s0aA.t05-thin90.a2m.gz, have 528 columns in 2 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jnrA/nostruct-align/1jnrA.t05-thin90.a2m.gz
# 1jnrA.t05-thin90.a2m with 7218 sequences, total weight= 7218 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00184 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jnrA/info/1jnrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jnrA/nostruct-align/1jnrA.t05-thin90.a2m.gz, have 1170 columns in 3 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jkeA/nostruct-align/1jkeA.t05-thin90.a2m.gz
# 1jkeA.t05-thin90.a2m with 203 sequences, total weight= 12.8712 avg weight= 0.0634049 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jkeA/info/1jkeA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jkeA/nostruct-align/1jkeA.t05-thin90.a2m.gz, have 1315 columns in 4 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iukA/nostruct-align/1iukA.t05-thin90.a2m.gz
# 1iukA.t05-thin90.a2m with 363 sequences, total weight= 117.748 avg weight= 0.324376 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30408 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iukA/info/1iukA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iukA/nostruct-align/1iukA.t05-thin90.a2m.gz, have 1451 columns in 5 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2g/2gdm/nostruct-align/2gdm.t05-thin90.a2m.gz
# 2gdm.t05-thin90.a2m with 986 sequences, total weight= 986 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18534 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2g/2gdm/info/2gdm.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2g/2gdm/nostruct-align/2gdm.t05-thin90.a2m.gz, have 1604 columns in 6 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1ccwA/nostruct-align/1ccwA.t05-thin90.a2m.gz
# 1ccwA.t05-thin90.a2m with 349 sequences, total weight= 61.8369 avg weight= 0.177183 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30106 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1ccwA/info/1ccwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1ccwA/nostruct-align/1ccwA.t05-thin90.a2m.gz, have 1741 columns in 7 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1senA/nostruct-align/1senA.t05-thin90.a2m.gz
# 1senA.t05-thin90.a2m with 2054 sequences, total weight= 2054 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05992 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1senA/info/1senA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1senA/nostruct-align/1senA.t05-thin90.a2m.gz, have 1875 columns in 8 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mtpA/nostruct-align/1mtpA.t05-thin90.a2m.gz
# 1mtpA.t05-thin90.a2m with 817 sequences, total weight= 411.597 avg weight= 0.50379 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31231 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mtpA/info/1mtpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mtpA/nostruct-align/1mtpA.t05-thin90.a2m.gz, have 2195 columns in 9 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ro0A/nostruct-align/1ro0A.t05-thin90.a2m.gz
# 1ro0A.t05-thin90.a2m with 57 sequences, total weight= 57 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15295 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ro0A/info/1ro0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1ro0A/nostruct-align/1ro0A.t05-thin90.a2m.gz, have 2405 columns in 10 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dlwA/nostruct-align/1dlwA.t05-thin90.a2m.gz
# 1dlwA.t05-thin90.a2m with 147 sequences, total weight= 73.3552 avg weight= 0.499015 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3009 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dlwA/info/1dlwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dlwA/nostruct-align/1dlwA.t05-thin90.a2m.gz, have 2521 columns in 11 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o7sA/nostruct-align/1o7sA.t05-thin90.a2m.gz
# 1o7sA.t05-thin90.a2m with 11660 sequences, total weight= 66.7944 avg weight= 0.00572851 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30475 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o7sA/info/1o7sA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o7sA/nostruct-align/1o7sA.t05-thin90.a2m.gz, have 2633 columns in 12 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ixh/nostruct-align/1ixh.t05-thin90.a2m.gz
# 1ixh.t05-thin90.a2m with 458 sequences, total weight= 458 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19945 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ixh/info/1ixh.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ixh/nostruct-align/1ixh.t05-thin90.a2m.gz, have 2954 columns in 13 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pg4A/nostruct-align/1pg4A.t05-thin90.a2m.gz
# 1pg4A.t05-thin90.a2m with 5633 sequences, total weight= 5633 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0528 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pg4A/info/1pg4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pg4A/nostruct-align/1pg4A.t05-thin90.a2m.gz, have 3587 columns in 14 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kwfA/nostruct-align/1kwfA.t05-thin90.a2m.gz
# 1kwfA.t05-thin90.a2m with 75 sequences, total weight= 75 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15993 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kwfA/info/1kwfA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kwfA/nostruct-align/1kwfA.t05-thin90.a2m.gz, have 3950 columns in 15 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b5eA/nostruct-align/1b5eA.t05-thin90.a2m.gz
# 1b5eA.t05-thin90.a2m with 265 sequences, total weight= 54.8156 avg weight= 0.206851 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b5eA/info/1b5eA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1b5eA/nostruct-align/1b5eA.t05-thin90.a2m.gz, have 4191 columns in 16 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1km4A/nostruct-align/1km4A.t05-thin90.a2m.gz
# 1km4A.t05-thin90.a2m with 725 sequences, total weight= 725 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2462 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1km4A/info/1km4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1km4A/nostruct-align/1km4A.t05-thin90.a2m.gz, have 4403 columns in 17 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gd0A/nostruct-align/1gd0A.t05-thin90.a2m.gz
# 1gd0A.t05-thin90.a2m with 95 sequences, total weight= 86.6408 avg weight= 0.912009 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gd0A/info/1gd0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gd0A/nostruct-align/1gd0A.t05-thin90.a2m.gz, have 4521 columns in 18 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1ft5A/nostruct-align/1ft5A.t05-thin90.a2m.gz
# 1ft5A.t05-thin90.a2m with 562 sequences, total weight= 562 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.82964 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1ft5A/info/1ft5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1ft5A/nostruct-align/1ft5A.t05-thin90.a2m.gz, have 4732 columns in 19 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ro7A/nostruct-align/1ro7A.t05-thin90.a2m.gz
# 1ro7A.t05-thin90.a2m with 8 sequences, total weight= 4.02958 avg weight= 0.503698 13 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ro7A/info/1ro7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1ro7A/nostruct-align/1ro7A.t05-thin90.a2m.gz, have 4990 columns in 20 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uj2A/nostruct-align/1uj2A.t05-thin90.a2m.gz
# 1uj2A.t05-thin90.a2m with 3802 sequences, total weight= 3802 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.842015 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uj2A/info/1uj2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uj2A/nostruct-align/1uj2A.t05-thin90.a2m.gz, have 5203 columns in 21 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l7aA/nostruct-align/1l7aA.t05-thin90.a2m.gz
# 1l7aA.t05-thin90.a2m with 10972 sequences, total weight= 10972 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.638891 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l7aA/info/1l7aA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l7aA/nostruct-align/1l7aA.t05-thin90.a2m.gz, have 5521 columns in 22 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qgvA/nostruct-align/1qgvA.t05-thin90.a2m.gz
# 1qgvA.t05-thin90.a2m with 44 sequences, total weight= 9.69415 avg weight= 0.220322 25 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qgvA/info/1qgvA.stride-mixed.near-backbone-11
WARNING: skipping a, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qgvA/nostruct-align/1qgvA.t05-thin90.a2m.gz, have 5651 columns in 23 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o6vA/nostruct-align/1o6vA.t05-thin90.a2m.gz
# 1o6vA.t05-thin90.a2m with 6929 sequences, total weight= 6929 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.928241 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o6vA/info/1o6vA.stride-mixed.near-backbone-11
WARNING: skipping c, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o6vA/nostruct-align/1o6vA.t05-thin90.a2m.gz, have 6113 columns in 24 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fx2A/nostruct-align/1fx2A.t05-thin90.a2m.gz
# 1fx2A.t05-thin90.a2m with 970 sequences, total weight= 970 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07645 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fx2A/info/1fx2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fx2A/nostruct-align/1fx2A.t05-thin90.a2m.gz, have 6348 columns in 25 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gx3A/nostruct-align/1gx3A.t05-thin90.a2m.gz
# 1gx3A.t05-thin90.a2m with 115 sequences, total weight= 115 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22312 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gx3A/info/1gx3A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gx3A/nostruct-align/1gx3A.t05-thin90.a2m.gz, have 6624 columns in 26 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jhjA/nostruct-align/1jhjA.t05-thin90.a2m.gz
# 1jhjA.t05-thin90.a2m with 74 sequences, total weight= 36.763 avg weight= 0.496798 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jhjA/info/1jhjA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jhjA/nostruct-align/1jhjA.t05-thin90.a2m.gz, have 6785 columns in 27 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1luqA/nostruct-align/1luqA.t05-thin90.a2m.gz
# 1luqA.t05-thin90.a2m with 40 sequences, total weight= 18.2846 avg weight= 0.457114 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1luqA/info/1luqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1luqA/nostruct-align/1luqA.t05-thin90.a2m.gz, have 6904 columns in 28 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bupA/nostruct-align/1bupA.t05-thin90.a2m.gz
# 1bupA.t05-thin90.a2m with 1677 sequences, total weight= 1677 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21293 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bupA/info/1bupA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bupA/nostruct-align/1bupA.t05-thin90.a2m.gz, have 7282 columns in 29 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ugpB/nostruct-align/1ugpB.t05-thin90.a2m.gz
# 1ugpB.t05-thin90.a2m with 39 sequences, total weight= 17.7985 avg weight= 0.456372 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ugpB/info/1ugpB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ugpB/nostruct-align/1ugpB.t05-thin90.a2m.gz, have 7508 columns in 30 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p6oA/nostruct-align/1p6oA.t05-thin90.a2m.gz
# 1p6oA.t05-thin90.a2m with 988 sequences, total weight= 988 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17151 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p6oA/info/1p6oA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p6oA/nostruct-align/1p6oA.t05-thin90.a2m.gz, have 7664 columns in 31 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lm4A/nostruct-align/1lm4A.t05-thin90.a2m.gz
# 1lm4A.t05-thin90.a2m with 389 sequences, total weight= 87.7738 avg weight= 0.22564 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30424 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lm4A/info/1lm4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lm4A/nostruct-align/1lm4A.t05-thin90.a2m.gz, have 7854 columns in 32 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i4uA/nostruct-align/1i4uA.t05-thin90.a2m.gz
# 1i4uA.t05-thin90.a2m with 521 sequences, total weight= 521 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.955453 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i4uA/info/1i4uA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i4uA/nostruct-align/1i4uA.t05-thin90.a2m.gz, have 8035 columns in 33 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1on2A/nostruct-align/1on2A.t05-thin90.a2m.gz
# 1on2A.t05-thin90.a2m with 388 sequences, total weight= 388 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05558 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1on2A/info/1on2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1on2A/nostruct-align/1on2A.t05-thin90.a2m.gz, have 8170 columns in 34 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f3uA/nostruct-align/1f3uA.t05-thin90.a2m.gz
# 1f3uA.t05-thin90.a2m with 35 sequences, total weight= 22.7831 avg weight= 0.650946 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f3uA/info/1f3uA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f3uA/nostruct-align/1f3uA.t05-thin90.a2m.gz, have 8288 columns in 35 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m0wA/nostruct-align/1m0wA.t05-thin90.a2m.gz
# 1m0wA.t05-thin90.a2m with 79 sequences, total weight= 21.9189 avg weight= 0.277454 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m0wA/info/1m0wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m0wA/nostruct-align/1m0wA.t05-thin90.a2m.gz, have 8769 columns in 36 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ubkL/nostruct-align/1ubkL.t05-thin90.a2m.gz
# 1ubkL.t05-thin90.a2m with 488 sequences, total weight= 488 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28525 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ubkL/info/1ubkL.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ubkL/nostruct-align/1ubkL.t05-thin90.a2m.gz, have 9303 columns in 37 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uekA/nostruct-align/1uekA.t05-thin90.a2m.gz
# 1uekA.t05-thin90.a2m with 975 sequences, total weight= 975 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04115 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uekA/info/1uekA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uekA/nostruct-align/1uekA.t05-thin90.a2m.gz, have 9571 columns in 38 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g2rA/nostruct-align/1g2rA.t05-thin90.a2m.gz
# 1g2rA.t05-thin90.a2m with 118 sequences, total weight= 62.3197 avg weight= 0.528133 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30048 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g2rA/info/1g2rA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g2rA/nostruct-align/1g2rA.t05-thin90.a2m.gz, have 9665 columns in 39 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s5dA/nostruct-align/1s5dA.t05-thin90.a2m.gz
# 1s5dA.t05-thin90.a2m with 36 sequences, total weight= 36 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23673 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s5dA/info/1s5dA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s5dA/nostruct-align/1s5dA.t05-thin90.a2m.gz, have 9883 columns in 40 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m40A/nostruct-align/1m40A.t05-thin90.a2m.gz
# 1m40A.t05-thin90.a2m with 682 sequences, total weight= 682 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08254 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m40A/info/1m40A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m40A/nostruct-align/1m40A.t05-thin90.a2m.gz, have 10146 columns in 41 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rb9/nostruct-align/1rb9.t05-thin90.a2m.gz
# 1rb9.t05-thin90.a2m with 198 sequences, total weight= 10.5129 avg weight= 0.0530955 42 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rb9/info/1rb9.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rb9/nostruct-align/1rb9.t05-thin90.a2m.gz, have 10198 columns in 42 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t7rA/nostruct-align/1t7rA.t05-thin90.a2m.gz
# 1t7rA.t05-thin90.a2m with 951 sequences, total weight= 951 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.975719 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t7rA/info/1t7rA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t7rA/nostruct-align/1t7rA.t05-thin90.a2m.gz, have 10448 columns in 43 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g5tA/nostruct-align/1g5tA.t05-thin90.a2m.gz
# 1g5tA.t05-thin90.a2m with 166 sequences, total weight= 17.7026 avg weight= 0.106642 42 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g5tA/info/1g5tA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g5tA/nostruct-align/1g5tA.t05-thin90.a2m.gz, have 10605 columns in 44 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pj5A/nostruct-align/1pj5A.t05-thin90.a2m.gz
# 1pj5A.t05-thin90.a2m with 7733 sequences, total weight= 7733 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.955906 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pj5A/info/1pj5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pj5A/nostruct-align/1pj5A.t05-thin90.a2m.gz, have 11432 columns in 45 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d2vA/nostruct-align/1d2vA.t05-thin90.a2m.gz
# 1d2vA.t05-thin90.a2m with 118 sequences, total weight= 29.7985 avg weight= 0.25253 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d2vA/info/1d2vA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d2vA/nostruct-align/1d2vA.t05-thin90.a2m.gz, have 11536 columns in 46 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1osyA/nostruct-align/1osyA.t05-thin90.a2m.gz
# 1osyA.t05-thin90.a2m with 3 sequences, total weight= 2.24944 avg weight= 0.749813 7 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1osyA/info/1osyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1osyA/nostruct-align/1osyA.t05-thin90.a2m.gz, have 11650 columns in 47 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qu9A/nostruct-align/1qu9A.t05-thin90.a2m.gz
# 1qu9A.t05-thin90.a2m with 809 sequences, total weight= 809 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29436 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qu9A/info/1qu9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qu9A/nostruct-align/1qu9A.t05-thin90.a2m.gz, have 11777 columns in 48 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sbp/nostruct-align/1sbp.t05-thin90.a2m.gz
# 1sbp.t05-thin90.a2m with 2116 sequences, total weight= 2116 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.809092 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sbp/info/1sbp.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sbp/nostruct-align/1sbp.t05-thin90.a2m.gz, have 12086 columns in 49 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rqwA/nostruct-align/1rqwA.t05-thin90.a2m.gz
# 1rqwA.t05-thin90.a2m with 190 sequences, total weight= 22.1551 avg weight= 0.116606 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rqwA/info/1rqwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rqwA/nostruct-align/1rqwA.t05-thin90.a2m.gz, have 12293 columns in 50 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pvgA/nostruct-align/1pvgA.t05-thin90.a2m.gz
# 1pvgA.t05-thin90.a2m with 908 sequences, total weight= 100.785 avg weight= 0.110996 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30361 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pvgA/info/1pvgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pvgA/nostruct-align/1pvgA.t05-thin90.a2m.gz, have 12671 columns in 51 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vkpA/nostruct-align/1vkpA.t05-thin90.a2m.gz
# 1vkpA.t05-thin90.a2m with 111 sequences, total weight= 37.9995 avg weight= 0.342338 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vkpA/info/1vkpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vkpA/nostruct-align/1vkpA.t05-thin90.a2m.gz, have 13036 columns in 52 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hbnC/nostruct-align/1hbnC.t05-thin90.a2m.gz
# 1hbnC.t05-thin90.a2m with 18 sequences, total weight= 3.31506 avg weight= 0.18417 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hbnC/info/1hbnC.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hbnC/nostruct-align/1hbnC.t05-thin90.a2m.gz, have 13283 columns in 53 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bm8/nostruct-align/1bm8.t05-thin90.a2m.gz
# 1bm8.t05-thin90.a2m with 57 sequences, total weight= 19.2784 avg weight= 0.338218 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bm8/info/1bm8.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bm8/nostruct-align/1bm8.t05-thin90.a2m.gz, have 13382 columns in 54 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2s/2spcA/nostruct-align/2spcA.t05-thin90.a2m.gz
# 2spcA.t05-thin90.a2m with 1129 sequences, total weight= 1129 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0829 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2s/2spcA/info/2spcA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2s/2spcA/nostruct-align/2spcA.t05-thin90.a2m.gz, have 13489 columns in 55 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1id0A/nostruct-align/1id0A.t05-thin90.a2m.gz
# 1id0A.t05-thin90.a2m with 6908 sequences, total weight= 6908 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21916 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1id0A/info/1id0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1id0A/nostruct-align/1id0A.t05-thin90.a2m.gz, have 13635 columns in 56 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rreA/nostruct-align/1rreA.t05-thin90.a2m.gz
# 1rreA.t05-thin90.a2m with 496 sequences, total weight= 180.604 avg weight= 0.364121 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30865 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rreA/info/1rreA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rreA/nostruct-align/1rreA.t05-thin90.a2m.gz, have 13817 columns in 57 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a12A/nostruct-align/1a12A.t05-thin90.a2m.gz
# 1a12A.t05-thin90.a2m with 715 sequences, total weight= 715 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01206 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a12A/info/1a12A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a12A/nostruct-align/1a12A.t05-thin90.a2m.gz, have 14218 columns in 58 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1ht6A/nostruct-align/1ht6A.t05-thin90.a2m.gz
# 1ht6A.t05-thin90.a2m with 1863 sequences, total weight= 1863 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02037 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1ht6A/info/1ht6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1ht6A/nostruct-align/1ht6A.t05-thin90.a2m.gz, have 14622 columns in 59 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2m/2mcm/nostruct-align/2mcm.t05-thin90.a2m.gz
# 2mcm.t05-thin90.a2m with 6 sequences, total weight= 3.59343 avg weight= 0.598905 13 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2m/2mcm/info/2mcm.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2m/2mcm/nostruct-align/2mcm.t05-thin90.a2m.gz, have 14734 columns in 60 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1czpA/nostruct-align/1czpA.t05-thin90.a2m.gz
# 1czpA.t05-thin90.a2m with 907 sequences, total weight= 907 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27869 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1czpA/info/1czpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1czpA/nostruct-align/1czpA.t05-thin90.a2m.gz, have 14832 columns in 61 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ok7A/nostruct-align/1ok7A.t05-thin90.a2m.gz
# 1ok7A.t05-thin90.a2m with 297 sequences, total weight= 127.993 avg weight= 0.430954 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30401 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ok7A/info/1ok7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ok7A/nostruct-align/1ok7A.t05-thin90.a2m.gz, have 15198 columns in 62 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ojhA/nostruct-align/1ojhA.t05-thin90.a2m.gz
# 1ojhA.t05-thin90.a2m with 4 sequences, total weight= 3.05605 avg weight= 0.764012 8 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ojhA/info/1ojhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ojhA/nostruct-align/1ojhA.t05-thin90.a2m.gz, have 15250 columns in 63 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pe1A/nostruct-align/1pe1A.t05-thin90.a2m.gz
# 1pe1A.t05-thin90.a2m with 445 sequences, total weight= 38.8749 avg weight= 0.0873594 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pe1A/info/1pe1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pe1A/nostruct-align/1pe1A.t05-thin90.a2m.gz, have 15508 columns in 64 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2p/2pvbA/nostruct-align/2pvbA.t05-thin90.a2m.gz
# 2pvbA.t05-thin90.a2m with 1636 sequences, total weight= 1636 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2023 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2p/2pvbA/info/2pvbA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2p/2pvbA/nostruct-align/2pvbA.t05-thin90.a2m.gz, have 15615 columns in 65 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a2pA/nostruct-align/1a2pA.t05-thin90.a2m.gz
# 1a2pA.t05-thin90.a2m with 45 sequences, total weight= 12.8603 avg weight= 0.285785 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a2pA/info/1a2pA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a2pA/nostruct-align/1a2pA.t05-thin90.a2m.gz, have 15723 columns in 66 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jcdA/nostruct-align/1jcdA.t05-thin90.a2m.gz
# 1jcdA.t05-thin90.a2m with 9 sequences, total weight= 4.58805 avg weight= 0.509783 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jcdA/info/1jcdA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jcdA/nostruct-align/1jcdA.t05-thin90.a2m.gz, have 15773 columns in 67 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nu4A/nostruct-align/1nu4A.t05-thin90.a2m.gz
# 1nu4A.t05-thin90.a2m with 5045 sequences, total weight= 5045 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12109 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nu4A/info/1nu4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nu4A/nostruct-align/1nu4A.t05-thin90.a2m.gz, have 15864 columns in 68 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fn9A/nostruct-align/1fn9A.t05-thin90.a2m.gz
# 1fn9A.t05-thin90.a2m with 10 sequences, total weight= 9.0299 avg weight= 0.90299 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fn9A/info/1fn9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fn9A/nostruct-align/1fn9A.t05-thin90.a2m.gz, have 16229 columns in 69 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j77A/nostruct-align/1j77A.t05-thin90.a2m.gz
# 1j77A.t05-thin90.a2m with 135 sequences, total weight= 135 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24626 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j77A/info/1j77A.stride-mixed.near-backbone-11
WARNING: skipping f, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j77A/nostruct-align/1j77A.t05-thin90.a2m.gz, have 16428 columns in 70 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n1jB/nostruct-align/1n1jB.t05-thin90.a2m.gz
# 1n1jB.t05-thin90.a2m with 103 sequences, total weight= 22.124 avg weight= 0.214796 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n1jB/info/1n1jB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n1jB/nostruct-align/1n1jB.t05-thin90.a2m.gz, have 16506 columns in 71 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1btkA/nostruct-align/1btkA.t05-thin90.a2m.gz
# 1btkA.t05-thin90.a2m with 418 sequences, total weight= 418 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10334 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1btkA/info/1btkA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1btkA/nostruct-align/1btkA.t05-thin90.a2m.gz, have 16666 columns in 72 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hxrA/nostruct-align/1hxrA.t05-thin90.a2m.gz
# 1hxrA.t05-thin90.a2m with 24 sequences, total weight= 12.1453 avg weight= 0.506053 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hxrA/info/1hxrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hxrA/nostruct-align/1hxrA.t05-thin90.a2m.gz, have 16773 columns in 73 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j27A/nostruct-align/1j27A.t05-thin90.a2m.gz
# 1j27A.t05-thin90.a2m with 45 sequences, total weight= 20.2042 avg weight= 0.448983 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j27A/info/1j27A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j27A/nostruct-align/1j27A.t05-thin90.a2m.gz, have 16871 columns in 74 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kq1A/nostruct-align/1kq1A.t05-thin90.a2m.gz
# 1kq1A.t05-thin90.a2m with 61 sequences, total weight= 7.41167 avg weight= 0.121503 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kq1A/info/1kq1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kq1A/nostruct-align/1kq1A.t05-thin90.a2m.gz, have 16931 columns in 75 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1ktgA/nostruct-align/1ktgA.t05-thin90.a2m.gz
# 1ktgA.t05-thin90.a2m with 2515 sequences, total weight= 2515 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.923664 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1ktgA/info/1ktgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1ktgA/nostruct-align/1ktgA.t05-thin90.a2m.gz, have 17068 columns in 76 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ockA/nostruct-align/1ockA.t05-thin90.a2m.gz
# 1ockA.t05-thin90.a2m with 961 sequences, total weight= 374.301 avg weight= 0.389491 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31688 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ockA/info/1ockA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ockA/nostruct-align/1ockA.t05-thin90.a2m.gz, have 17480 columns in 77 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g61A/nostruct-align/1g61A.t05-thin90.a2m.gz
# 1g61A.t05-thin90.a2m with 63 sequences, total weight= 11.978 avg weight= 0.190127 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g61A/info/1g61A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g61A/nostruct-align/1g61A.t05-thin90.a2m.gz, have 17705 columns in 78 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f60B/nostruct-align/1f60B.t05-thin90.a2m.gz
# 1f60B.t05-thin90.a2m with 84 sequences, total weight= 10.3708 avg weight= 0.123462 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f60B/info/1f60B.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f60B/nostruct-align/1f60B.t05-thin90.a2m.gz, have 17795 columns in 79 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vcc/nostruct-align/1vcc.t05-thin90.a2m.gz
# 1vcc.t05-thin90.a2m with 13 sequences, total weight= 3.1011 avg weight= 0.238546 14 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vcc/info/1vcc.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vcc/nostruct-align/1vcc.t05-thin90.a2m.gz, have 17872 columns in 80 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vc4A/nostruct-align/1vc4A.t05-thin90.a2m.gz
# 1vc4A.t05-thin90.a2m with 695 sequences, total weight= 695 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19436 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vc4A/info/1vc4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vc4A/nostruct-align/1vc4A.t05-thin90.a2m.gz, have 18126 columns in 81 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oxdA/nostruct-align/1oxdA.t05-thin90.a2m.gz
# 1oxdA.t05-thin90.a2m with 80 sequences, total weight= 17.374 avg weight= 0.217175 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oxdA/info/1oxdA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oxdA/nostruct-align/1oxdA.t05-thin90.a2m.gz, have 18352 columns in 82 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q7zA/nostruct-align/1q7zA.t05-thin90.a2m.gz
# 1q7zA.t05-thin90.a2m with 627 sequences, total weight= 304.101 avg weight= 0.485009 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30555 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q7zA/info/1q7zA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q7zA/nostruct-align/1q7zA.t05-thin90.a2m.gz, have 18911 columns in 83 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l6pA/nostruct-align/1l6pA.t05-thin90.a2m.gz
# 1l6pA.t05-thin90.a2m with 91 sequences, total weight= 29.4262 avg weight= 0.323365 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l6pA/info/1l6pA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l6pA/nostruct-align/1l6pA.t05-thin90.a2m.gz, have 19032 columns in 84 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sjwA/nostruct-align/1sjwA.t05-thin90.a2m.gz
# 1sjwA.t05-thin90.a2m with 462 sequences, total weight= 462 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.949832 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sjwA/info/1sjwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sjwA/nostruct-align/1sjwA.t05-thin90.a2m.gz, have 19174 columns in 85 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1llmC/nostruct-align/1llmC.t05-thin90.a2m.gz
# 1llmC.t05-thin90.a2m with 13857 sequences, total weight= 3719.96 avg weight= 0.268453 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.34333 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1llmC/info/1llmC.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1llmC/nostruct-align/1llmC.t05-thin90.a2m.gz, have 19261 columns in 86 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1su8A/nostruct-align/1su8A.t05-thin90.a2m.gz
# 1su8A.t05-thin90.a2m with 115 sequences, total weight= 44.6789 avg weight= 0.388512 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1su8A/info/1su8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1su8A/nostruct-align/1su8A.t05-thin90.a2m.gz, have 19894 columns in 87 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mba/nostruct-align/1mba.t05-thin90.a2m.gz
# 1mba.t05-thin90.a2m with 957 sequences, total weight= 957 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23461 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mba/info/1mba.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mba/nostruct-align/1mba.t05-thin90.a2m.gz, have 20040 columns in 88 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pbjA/nostruct-align/1pbjA.t05-thin90.a2m.gz
# 1pbjA.t05-thin90.a2m with 2471 sequences, total weight= 2471 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10657 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pbjA/info/1pbjA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pbjA/nostruct-align/1pbjA.t05-thin90.a2m.gz, have 20160 columns in 89 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vm9A/nostruct-align/1vm9A.t05-thin90.a2m.gz
# 1vm9A.t05-thin90.a2m with 1248 sequences, total weight= 1248 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13399 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vm9A/info/1vm9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vm9A/nostruct-align/1vm9A.t05-thin90.a2m.gz, have 20269 columns in 90 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uscA/nostruct-align/1uscA.t05-thin90.a2m.gz
# 1uscA.t05-thin90.a2m with 542 sequences, total weight= 542 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1671 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uscA/info/1uscA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uscA/nostruct-align/1uscA.t05-thin90.a2m.gz, have 20447 columns in 91 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fg7A/nostruct-align/1fg7A.t05-thin90.a2m.gz
# 1fg7A.t05-thin90.a2m with 5245 sequences, total weight= 5245 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.943418 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fg7A/info/1fg7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fg7A/nostruct-align/1fg7A.t05-thin90.a2m.gz, have 20801 columns in 92 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j2rA/nostruct-align/1j2rA.t05-thin90.a2m.gz
# 1j2rA.t05-thin90.a2m with 733 sequences, total weight= 733 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12865 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j2rA/info/1j2rA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j2rA/nostruct-align/1j2rA.t05-thin90.a2m.gz, have 20989 columns in 93 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pbyA/nostruct-align/1pbyA.t05-thin90.a2m.gz
# 1pbyA.t05-thin90.a2m with 7 sequences, total weight= 4.80589 avg weight= 0.686556 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pbyA/info/1pbyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pbyA/nostruct-align/1pbyA.t05-thin90.a2m.gz, have 21478 columns in 94 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mun/nostruct-align/1mun.t05-thin90.a2m.gz
# 1mun.t05-thin90.a2m with 836 sequences, total weight= 836 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17259 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mun/info/1mun.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mun/nostruct-align/1mun.t05-thin90.a2m.gz, have 21703 columns in 95 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qopB/nostruct-align/1qopB.t05-thin90.a2m.gz
# 1qopB.t05-thin90.a2m with 1751 sequences, total weight= 1751 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16356 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qopB/info/1qopB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qopB/nostruct-align/1qopB.t05-thin90.a2m.gz, have 22093 columns in 96 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54B/nostruct-align/1v54B.t05-thin90.a2m.gz
# 1v54B.t05-thin90.a2m with 1816 sequences, total weight= 64.2743 avg weight= 0.0353933 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30139 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54B/info/1v54B.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v54B/nostruct-align/1v54B.t05-thin90.a2m.gz, have 22320 columns in 97 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kjwA/nostruct-align/1kjwA.t05-thin90.a2m.gz
# 1kjwA.t05-thin90.a2m with 801 sequences, total weight= 801 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22302 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kjwA/info/1kjwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kjwA/nostruct-align/1kjwA.t05-thin90.a2m.gz, have 22612 columns in 98 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l3lA/nostruct-align/1l3lA.t05-thin90.a2m.gz
# 1l3lA.t05-thin90.a2m with 4549 sequences, total weight= 4549 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09159 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l3lA/info/1l3lA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l3lA/nostruct-align/1l3lA.t05-thin90.a2m.gz, have 22845 columns in 99 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gwmA/nostruct-align/1gwmA.t05-thin90.a2m.gz
# 1gwmA.t05-thin90.a2m with 3 sequences, total weight= 2.75287 avg weight= 0.917623 9 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gwmA/info/1gwmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gwmA/nostruct-align/1gwmA.t05-thin90.a2m.gz, have 22998 columns in 100 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d0dA/nostruct-align/1d0dA.t05-thin90.a2m.gz
# 1d0dA.t05-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20764 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d0dA/info/1d0dA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d0dA/nostruct-align/1d0dA.t05-thin90.a2m.gz, have 23058 columns in 101 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vjvA/nostruct-align/1vjvA.t05-thin90.a2m.gz
# 1vjvA.t05-thin90.a2m with 1064 sequences, total weight= 1064 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01928 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vjvA/info/1vjvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vjvA/nostruct-align/1vjvA.t05-thin90.a2m.gz, have 23425 columns in 102 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fvkA/nostruct-align/1fvkA.t05-thin90.a2m.gz
# 1fvkA.t05-thin90.a2m with 797 sequences, total weight= 797 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.941243 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fvkA/info/1fvkA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fvkA/nostruct-align/1fvkA.t05-thin90.a2m.gz, have 23613 columns in 103 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pmi/nostruct-align/1pmi.t05-thin90.a2m.gz
# 1pmi.t05-thin90.a2m with 191 sequences, total weight= 176.627 avg weight= 0.924748 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pmi/info/1pmi.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pmi/nostruct-align/1pmi.t05-thin90.a2m.gz, have 24053 columns in 104 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ibyA/nostruct-align/1ibyA.t05-thin90.a2m.gz
# 1ibyA.t05-thin90.a2m with 2 sequences, total weight= 1.9453 avg weight= 0.972648 6 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ibyA/info/1ibyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ibyA/nostruct-align/1ibyA.t05-thin90.a2m.gz, have 24165 columns in 105 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o82A/nostruct-align/1o82A.t05-thin90.a2m.gz
# 1o82A.t05-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.634682 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o82A/info/1o82A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o82A/nostruct-align/1o82A.t05-thin90.a2m.gz, have 24235 columns in 106 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uaiA/nostruct-align/1uaiA.t05-thin90.a2m.gz
# 1uaiA.t05-thin90.a2m with 39 sequences, total weight= 39 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29462 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uaiA/info/1uaiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uaiA/nostruct-align/1uaiA.t05-thin90.a2m.gz, have 24458 columns in 107 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1brt/nostruct-align/1brt.t05-thin90.a2m.gz
# 1brt.t05-thin90.a2m with 7422 sequences, total weight= 7422 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.679606 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1brt/info/1brt.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1brt/nostruct-align/1brt.t05-thin90.a2m.gz, have 24735 columns in 108 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nrjB/nostruct-align/1nrjB.t05-thin90.a2m.gz
# 1nrjB.t05-thin90.a2m with 6931 sequences, total weight= 6931 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.919002 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nrjB/info/1nrjB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nrjB/nostruct-align/1nrjB.t05-thin90.a2m.gz, have 24926 columns in 109 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oqqA/nostruct-align/1oqqA.t05-thin90.a2m.gz
# 1oqqA.t05-thin90.a2m with 420 sequences, total weight= 305.25 avg weight= 0.726785 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30468 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oqqA/info/1oqqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oqqA/nostruct-align/1oqqA.t05-thin90.a2m.gz, have 25032 columns in 110 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jr8A/nostruct-align/1jr8A.t05-thin90.a2m.gz
# 1jr8A.t05-thin90.a2m with 122 sequences, total weight= 111.021 avg weight= 0.910006 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jr8A/info/1jr8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jr8A/nostruct-align/1jr8A.t05-thin90.a2m.gz, have 25137 columns in 111 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gvjA/nostruct-align/1gvjA.t05-thin90.a2m.gz
# 1gvjA.t05-thin90.a2m with 279 sequences, total weight= 57.8599 avg weight= 0.207383 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3017 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gvjA/info/1gvjA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gvjA/nostruct-align/1gvjA.t05-thin90.a2m.gz, have 25278 columns in 112 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d4tA/nostruct-align/1d4tA.t05-thin90.a2m.gz
# 1d4tA.t05-thin90.a2m with 811 sequences, total weight= 811 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29475 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d4tA/info/1d4tA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d4tA/nostruct-align/1d4tA.t05-thin90.a2m.gz, have 25382 columns in 113 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j1nA/nostruct-align/1j1nA.t05-thin90.a2m.gz
# 1j1nA.t05-thin90.a2m with 1832 sequences, total weight= 1832 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.904334 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j1nA/info/1j1nA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j1nA/nostruct-align/1j1nA.t05-thin90.a2m.gz, have 25874 columns in 114 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tfzA/nostruct-align/1tfzA.t05-thin90.a2m.gz
# 1tfzA.t05-thin90.a2m with 873 sequences, total weight= 873 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12845 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tfzA/info/1tfzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tfzA/nostruct-align/1tfzA.t05-thin90.a2m.gz, have 26238 columns in 115 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eexA/nostruct-align/1eexA.t05-thin90.a2m.gz
# 1eexA.t05-thin90.a2m with 13 sequences, total weight= 3.42866 avg weight= 0.263743 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eexA/info/1eexA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eexA/nostruct-align/1eexA.t05-thin90.a2m.gz, have 26789 columns in 116 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mg7A/nostruct-align/1mg7A.t05-thin90.a2m.gz
# 1mg7A.t05-thin90.a2m with 5 sequences, total weight= 3.67934 avg weight= 0.735869 10 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mg7A/info/1mg7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mg7A/nostruct-align/1mg7A.t05-thin90.a2m.gz, have 27140 columns in 117 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1us5A/nostruct-align/1us5A.t05-thin90.a2m.gz
# 1us5A.t05-thin90.a2m with 3392 sequences, total weight= 3392 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.785264 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1us5A/info/1us5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1us5A/nostruct-align/1us5A.t05-thin90.a2m.gz, have 27437 columns in 118 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1atg/nostruct-align/1atg.t05-thin90.a2m.gz
# 1atg.t05-thin90.a2m with 2249 sequences, total weight= 2249 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.86452 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1atg/info/1atg.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1atg/nostruct-align/1atg.t05-thin90.a2m.gz, have 27668 columns in 119 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f74A/nostruct-align/1f74A.t05-thin90.a2m.gz
# 1f74A.t05-thin90.a2m with 654 sequences, total weight= 654 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28968 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f74A/info/1f74A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f74A/nostruct-align/1f74A.t05-thin90.a2m.gz, have 27961 columns in 120 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mtyG/nostruct-align/1mtyG.t05-thin90.a2m.gz
# 1mtyG.t05-thin90.a2m with 6 sequences, total weight= 4.054 avg weight= 0.675666 14 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mtyG/info/1mtyG.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mtyG/nostruct-align/1mtyG.t05-thin90.a2m.gz, have 28123 columns in 121 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n62B/nostruct-align/1n62B.t05-thin90.a2m.gz
# 1n62B.t05-thin90.a2m with 628 sequences, total weight= 549.254 avg weight= 0.874608 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30213 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n62B/info/1n62B.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n62B/nostruct-align/1n62B.t05-thin90.a2m.gz, have 28927 columns in 122 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1ntvA/nostruct-align/1ntvA.t05-thin90.a2m.gz
# 1ntvA.t05-thin90.a2m with 322 sequences, total weight= 322 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10521 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1ntvA/info/1ntvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1ntvA/nostruct-align/1ntvA.t05-thin90.a2m.gz, have 29079 columns in 123 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gxyA/nostruct-align/1gxyA.t05-thin90.a2m.gz
# 1gxyA.t05-thin90.a2m with 67 sequences, total weight= 11.4351 avg weight= 0.170674 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gxyA/info/1gxyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gxyA/nostruct-align/1gxyA.t05-thin90.a2m.gz, have 29302 columns in 124 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f2tA/nostruct-align/1f2tA.t05-thin90.a2m.gz
# 1f2tA.t05-thin90.a2m with 12144 sequences, total weight= 12144 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.840569 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f2tA/info/1f2tA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f2tA/nostruct-align/1f2tA.t05-thin90.a2m.gz, have 29447 columns in 125 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hh8A/nostruct-align/1hh8A.t05-thin90.a2m.gz
# 1hh8A.t05-thin90.a2m with 6984 sequences, total weight= 6984 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.809933 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hh8A/info/1hh8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hh8A/nostruct-align/1hh8A.t05-thin90.a2m.gz, have 29639 columns in 126 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uylA/nostruct-align/1uylA.t05-thin90.a2m.gz
# 1uylA.t05-thin90.a2m with 374 sequences, total weight= 30.9837 avg weight= 0.0828441 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uylA/info/1uylA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uylA/nostruct-align/1uylA.t05-thin90.a2m.gz, have 29846 columns in 127 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s29A/nostruct-align/1s29A.t05-thin90.a2m.gz
# 1s29A.t05-thin90.a2m with 142 sequences, total weight= 32.0572 avg weight= 0.225755 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s29A/info/1s29A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s29A/nostruct-align/1s29A.t05-thin90.a2m.gz, have 29938 columns in 128 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kyhA/nostruct-align/1kyhA.t05-thin90.a2m.gz
# 1kyhA.t05-thin90.a2m with 1759 sequences, total weight= 1759 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.969782 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kyhA/info/1kyhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kyhA/nostruct-align/1kyhA.t05-thin90.a2m.gz, have 30206 columns in 129 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nu0A/nostruct-align/1nu0A.t05-thin90.a2m.gz
# 1nu0A.t05-thin90.a2m with 237 sequences, total weight= 39.7778 avg weight= 0.167839 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30054 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nu0A/info/1nu0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nu0A/nostruct-align/1nu0A.t05-thin90.a2m.gz, have 30337 columns in 130 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dciA/nostruct-align/1dciA.t05-thin90.a2m.gz
# 1dciA.t05-thin90.a2m with 2099 sequences, total weight= 2099 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14994 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dciA/info/1dciA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dciA/nostruct-align/1dciA.t05-thin90.a2m.gz, have 30612 columns in 131 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k6kA/nostruct-align/1k6kA.t05-thin90.a2m.gz
# 1k6kA.t05-thin90.a2m with 146 sequences, total weight= 46.1631 avg weight= 0.316186 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30034 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k6kA/info/1k6kA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k6kA/nostruct-align/1k6kA.t05-thin90.a2m.gz, have 30754 columns in 132 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ezgA/nostruct-align/1ezgA.t05-thin90.a2m.gz
# 1ezgA.t05-thin90.a2m with 18 sequences, total weight= 2.69035 avg weight= 0.149464 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ezgA/info/1ezgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ezgA/nostruct-align/1ezgA.t05-thin90.a2m.gz, have 30836 columns in 133 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1woqA/nostruct-align/1woqA.t05-thin90.a2m.gz
# 1woqA.t05-thin90.a2m with 1034 sequences, total weight= 1034 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12215 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1woqA/info/1woqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1woqA/nostruct-align/1woqA.t05-thin90.a2m.gz, have 31089 columns in 134 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n62C/nostruct-align/1n62C.t05-thin90.a2m.gz
# 1n62C.t05-thin90.a2m with 335 sequences, total weight= 178.955 avg weight= 0.534194 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30425 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n62C/info/1n62C.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n62C/nostruct-align/1n62C.t05-thin90.a2m.gz, have 31375 columns in 135 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lv7A/nostruct-align/1lv7A.t05-thin90.a2m.gz
# 1lv7A.t05-thin90.a2m with 7981 sequences, total weight= 7981 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.940835 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lv7A/info/1lv7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lv7A/nostruct-align/1lv7A.t05-thin90.a2m.gz, have 31626 columns in 136 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t3iA/nostruct-align/1t3iA.t05-thin90.a2m.gz
# 1t3iA.t05-thin90.a2m with 8439 sequences, total weight= 8439 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.814765 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t3iA/info/1t3iA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t3iA/nostruct-align/1t3iA.t05-thin90.a2m.gz, have 32032 columns in 137 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s9uA/nostruct-align/1s9uA.t05-thin90.a2m.gz
# 1s9uA.t05-thin90.a2m with 200 sequences, total weight= 200 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03857 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s9uA/info/1s9uA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s9uA/nostruct-align/1s9uA.t05-thin90.a2m.gz, have 32233 columns in 138 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2p/2por/nostruct-align/2por.t05-thin90.a2m.gz
# 2por.t05-thin90.a2m with 665 sequences, total weight= 665 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17366 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2p/2por/info/2por.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2p/2por/nostruct-align/2por.t05-thin90.a2m.gz, have 32534 columns in 139 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eluA/nostruct-align/1eluA.t05-thin90.a2m.gz
# 1eluA.t05-thin90.a2m with 8056 sequences, total weight= 8056 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.840992 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eluA/info/1eluA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eluA/nostruct-align/1eluA.t05-thin90.a2m.gz, have 32915 columns in 140 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tzvA/nostruct-align/1tzvA.t05-thin90.a2m.gz
# 1tzvA.t05-thin90.a2m with 402 sequences, total weight= 402 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27437 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tzvA/info/1tzvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tzvA/nostruct-align/1tzvA.t05-thin90.a2m.gz, have 33056 columns in 141 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j8bA/nostruct-align/1j8bA.t05-thin90.a2m.gz
# 1j8bA.t05-thin90.a2m with 189 sequences, total weight= 25.5352 avg weight= 0.135107 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j8bA/info/1j8bA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j8bA/nostruct-align/1j8bA.t05-thin90.a2m.gz, have 33148 columns in 142 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n2eA/nostruct-align/1n2eA.t05-thin90.a2m.gz
# 1n2eA.t05-thin90.a2m with 214 sequences, total weight= 19.4386 avg weight= 0.0908347 45 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n2eA/info/1n2eA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n2eA/nostruct-align/1n2eA.t05-thin90.a2m.gz, have 33436 columns in 143 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nuyA/nostruct-align/1nuyA.t05-thin90.a2m.gz
# 1nuyA.t05-thin90.a2m with 531 sequences, total weight= 471.734 avg weight= 0.888388 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30169 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nuyA/info/1nuyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nuyA/nostruct-align/1nuyA.t05-thin90.a2m.gz, have 33764 columns in 144 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nscA/nostruct-align/1nscA.t05-thin90.a2m.gz
# 1nscA.t05-thin90.a2m with 65 sequences, total weight= 5.90368 avg weight= 0.0908259 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nscA/info/1nscA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nscA/nostruct-align/1nscA.t05-thin90.a2m.gz, have 34154 columns in 145 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k0mA/nostruct-align/1k0mA.t05-thin90.a2m.gz
# 1k0mA.t05-thin90.a2m with 2658 sequences, total weight= 2658 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.928394 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k0mA/info/1k0mA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k0mA/nostruct-align/1k0mA.t05-thin90.a2m.gz, have 34389 columns in 146 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hx0A/nostruct-align/1hx0A.t05-thin90.a2m.gz
# 1hx0A.t05-thin90.a2m with 1841 sequences, total weight= 1841 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.998611 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hx0A/info/1hx0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hx0A/nostruct-align/1hx0A.t05-thin90.a2m.gz, have 34885 columns in 147 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j2lA/nostruct-align/1j2lA.t05-thin90.a2m.gz
# 1j2lA.t05-thin90.a2m with 247 sequences, total weight= 10.6267 avg weight= 0.0430229 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j2lA/info/1j2lA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j2lA/nostruct-align/1j2lA.t05-thin90.a2m.gz, have 34953 columns in 148 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dfmA/nostruct-align/1dfmA.t05-thin90.a2m.gz
# 1dfmA.t05-thin90.a2m with 7 sequences, total weight= 7 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20871 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dfmA/info/1dfmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dfmA/nostruct-align/1dfmA.t05-thin90.a2m.gz, have 35176 columns in 149 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ekgA/nostruct-align/1ekgA.t05-thin90.a2m.gz
# 1ekgA.t05-thin90.a2m with 98 sequences, total weight= 33.3506 avg weight= 0.340312 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ekgA/info/1ekgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ekgA/nostruct-align/1ekgA.t05-thin90.a2m.gz, have 35295 columns in 150 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v33A/nostruct-align/1v33A.t05-thin90.a2m.gz
# 1v33A.t05-thin90.a2m with 122 sequences, total weight= 122 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2493 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v33A/info/1v33A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v33A/nostruct-align/1v33A.t05-thin90.a2m.gz, have 35641 columns in 151 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1es5A/nostruct-align/1es5A.t05-thin90.a2m.gz
# 1es5A.t05-thin90.a2m with 784 sequences, total weight= 784 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06097 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1es5A/info/1es5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1es5A/nostruct-align/1es5A.t05-thin90.a2m.gz, have 35901 columns in 152 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b9mA/nostruct-align/1b9mA.t05-thin90.a2m.gz
# 1b9mA.t05-thin90.a2m with 4708 sequences, total weight= 4708 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12851 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b9mA/info/1b9mA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1b9mA/nostruct-align/1b9mA.t05-thin90.a2m.gz, have 36159 columns in 153 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k55A/nostruct-align/1k55A.t05-thin90.a2m.gz
# 1k55A.t05-thin90.a2m with 1453 sequences, total weight= 1453 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14665 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k55A/info/1k55A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k55A/nostruct-align/1k55A.t05-thin90.a2m.gz, have 36404 columns in 154 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m7yA/nostruct-align/1m7yA.t05-thin90.a2m.gz
# 1m7yA.t05-thin90.a2m with 4612 sequences, total weight= 4612 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.968696 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m7yA/info/1m7yA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m7yA/nostruct-align/1m7yA.t05-thin90.a2m.gz, have 36828 columns in 155 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uk8A/nostruct-align/1uk8A.t05-thin90.a2m.gz
# 1uk8A.t05-thin90.a2m with 7742 sequences, total weight= 7742 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.673381 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uk8A/info/1uk8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uk8A/nostruct-align/1uk8A.t05-thin90.a2m.gz, have 37099 columns in 156 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hz6A/nostruct-align/1hz6A.t05-thin90.a2m.gz
# 1hz6A.t05-thin90.a2m with 10 sequences, total weight= 3.18888 avg weight= 0.318888 11 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hz6A/info/1hz6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hz6A/nostruct-align/1hz6A.t05-thin90.a2m.gz, have 37166 columns in 157 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qauA/nostruct-align/1qauA.t05-thin90.a2m.gz
# 1qauA.t05-thin90.a2m with 2299 sequences, total weight= 2299 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1056 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qauA/info/1qauA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qauA/nostruct-align/1qauA.t05-thin90.a2m.gz, have 37278 columns in 158 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g8eA/nostruct-align/1g8eA.t05-thin90.a2m.gz
# 1g8eA.t05-thin90.a2m with 30 sequences, total weight= 7.7171 avg weight= 0.257237 25 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g8eA/info/1g8eA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g8eA/nostruct-align/1g8eA.t05-thin90.a2m.gz, have 37376 columns in 159 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1ne2A/nostruct-align/1ne2A.t05-thin90.a2m.gz
# 1ne2A.t05-thin90.a2m with 10336 sequences, total weight= 10336 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.628683 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1ne2A/info/1ne2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1ne2A/nostruct-align/1ne2A.t05-thin90.a2m.gz, have 37552 columns in 160 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uv7A/nostruct-align/1uv7A.t05-thin90.a2m.gz
# 1uv7A.t05-thin90.a2m with 21 sequences, total weight= 8.56902 avg weight= 0.408048 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uv7A/info/1uv7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uv7A/nostruct-align/1uv7A.t05-thin90.a2m.gz, have 37628 columns in 161 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e6cA/nostruct-align/1e6cA.t05-thin90.a2m.gz
# 1e6cA.t05-thin90.a2m with 6445 sequences, total weight= 6445 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.784522 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e6cA/info/1e6cA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e6cA/nostruct-align/1e6cA.t05-thin90.a2m.gz, have 37798 columns in 162 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sluA/nostruct-align/1sluA.t05-thin90.a2m.gz
# 1sluA.t05-thin90.a2m with 30 sequences, total weight= 11.51 avg weight= 0.383668 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sluA/info/1sluA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sluA/nostruct-align/1sluA.t05-thin90.a2m.gz, have 37929 columns in 163 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ooyA/nostruct-align/1ooyA.t05-thin90.a2m.gz
# 1ooyA.t05-thin90.a2m with 576 sequences, total weight= 576 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29528 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ooyA/info/1ooyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ooyA/nostruct-align/1ooyA.t05-thin90.a2m.gz, have 38392 columns in 164 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ojrA/nostruct-align/1ojrA.t05-thin90.a2m.gz
# 1ojrA.t05-thin90.a2m with 482 sequences, total weight= 482 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10761 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ojrA/info/1ojrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ojrA/nostruct-align/1ojrA.t05-thin90.a2m.gz, have 38666 columns in 165 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bs0A/nostruct-align/1bs0A.t05-thin90.a2m.gz
# 1bs0A.t05-thin90.a2m with 8007 sequences, total weight= 8007 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.845867 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bs0A/info/1bs0A.stride-mixed.near-backbone-11
WARNING: skipping e, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bs0A/nostruct-align/1bs0A.t05-thin90.a2m.gz, have 39048 columns in 166 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vh5A/nostruct-align/1vh5A.t05-thin90.a2m.gz
# 1vh5A.t05-thin90.a2m with 954 sequences, total weight= 954 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.948231 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vh5A/info/1vh5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vh5A/nostruct-align/1vh5A.t05-thin90.a2m.gz, have 39186 columns in 167 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sbxA/nostruct-align/1sbxA.t05-thin90.a2m.gz
# 1sbxA.t05-thin90.a2m with 42 sequences, total weight= 7.94197 avg weight= 0.189094 25 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sbxA/info/1sbxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sbxA/nostruct-align/1sbxA.t05-thin90.a2m.gz, have 39292 columns in 168 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vljA/nostruct-align/1vljA.t05-thin90.a2m.gz
# 1vljA.t05-thin90.a2m with 959 sequences, total weight= 959 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14668 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vljA/info/1vljA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vljA/nostruct-align/1vljA.t05-thin90.a2m.gz, have 39690 columns in 169 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3s/3sil/nostruct-align/3sil.t05-thin90.a2m.gz
# 3sil.t05-thin90.a2m with 658 sequences, total weight= 513.537 avg weight= 0.780452 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30413 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3s/3sil/info/3sil.stride-mixed.near-backbone-11
WARNING: skipping b, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/3s/3sil/nostruct-align/3sil.t05-thin90.a2m.gz, have 40068 columns in 170 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cv8/nostruct-align/1cv8.t05-thin90.a2m.gz
# 1cv8.t05-thin90.a2m with 5 sequences, total weight= 2.72305 avg weight= 0.54461 10 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cv8/info/1cv8.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cv8/nostruct-align/1cv8.t05-thin90.a2m.gz, have 40241 columns in 171 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h4pA/nostruct-align/1h4pA.t05-thin90.a2m.gz
# 1h4pA.t05-thin90.a2m with 1893 sequences, total weight= 1893 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.944379 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h4pA/info/1h4pA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h4pA/nostruct-align/1h4pA.t05-thin90.a2m.gz, have 40649 columns in 172 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j3wA/nostruct-align/1j3wA.t05-thin90.a2m.gz
# 1j3wA.t05-thin90.a2m with 14 sequences, total weight= 7.01759 avg weight= 0.501256 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j3wA/info/1j3wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j3wA/nostruct-align/1j3wA.t05-thin90.a2m.gz, have 40783 columns in 173 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hbnB/nostruct-align/1hbnB.t05-thin90.a2m.gz
# 1hbnB.t05-thin90.a2m with 21 sequences, total weight= 3.80283 avg weight= 0.181087 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hbnB/info/1hbnB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hbnB/nostruct-align/1hbnB.t05-thin90.a2m.gz, have 41225 columns in 174 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dmhA/nostruct-align/1dmhA.t05-thin90.a2m.gz
# 1dmhA.t05-thin90.a2m with 294 sequences, total weight= 143.797 avg weight= 0.489106 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30118 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dmhA/info/1dmhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dmhA/nostruct-align/1dmhA.t05-thin90.a2m.gz, have 41534 columns in 175 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qy1A/nostruct-align/1qy1A.t05-thin90.a2m.gz
# 1qy1A.t05-thin90.a2m with 443 sequences, total weight= 443 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00072 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qy1A/info/1qy1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qy1A/nostruct-align/1qy1A.t05-thin90.a2m.gz, have 41691 columns in 176 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xffA/nostruct-align/1xffA.t05-thin90.a2m.gz
# 1xffA.t05-thin90.a2m with 1214 sequences, total weight= 1214 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21576 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xffA/info/1xffA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xffA/nostruct-align/1xffA.t05-thin90.a2m.gz, have 41929 columns in 177 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1el5A/nostruct-align/1el5A.t05-thin90.a2m.gz
# 1el5A.t05-thin90.a2m with 8839 sequences, total weight= 8839 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.716675 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1el5A/info/1el5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1el5A/nostruct-align/1el5A.t05-thin90.a2m.gz, have 42314 columns in 178 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gv9A/nostruct-align/1gv9A.t05-thin90.a2m.gz
# 1gv9A.t05-thin90.a2m with 426 sequences, total weight= 426 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2143 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gv9A/info/1gv9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gv9A/nostruct-align/1gv9A.t05-thin90.a2m.gz, have 42537 columns in 179 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1koe/nostruct-align/1koe.t05-thin90.a2m.gz
# 1koe.t05-thin90.a2m with 46 sequences, total weight= 20.5473 avg weight= 0.446681 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1koe/info/1koe.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1koe/nostruct-align/1koe.t05-thin90.a2m.gz, have 42709 columns in 180 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mfgA/nostruct-align/1mfgA.t05-thin90.a2m.gz
# 1mfgA.t05-thin90.a2m with 1570 sequences, total weight= 1570 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26535 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mfgA/info/1mfgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mfgA/nostruct-align/1mfgA.t05-thin90.a2m.gz, have 42804 columns in 181 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pv5A/nostruct-align/1pv5A.t05-thin90.a2m.gz
# 1pv5A.t05-thin90.a2m with 29 sequences, total weight= 29 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22626 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pv5A/info/1pv5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pv5A/nostruct-align/1pv5A.t05-thin90.a2m.gz, have 43065 columns in 182 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1svsA/nostruct-align/1svsA.t05-thin90.a2m.gz
# 1svsA.t05-thin90.a2m with 692 sequences, total weight= 122.518 avg weight= 0.177049 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30197 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1svsA/info/1svsA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1svsA/nostruct-align/1svsA.t05-thin90.a2m.gz, have 43381 columns in 183 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dfuP/nostruct-align/1dfuP.t05-thin90.a2m.gz
# 1dfuP.t05-thin90.a2m with 181 sequences, total weight= 30.4384 avg weight= 0.168168 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dfuP/info/1dfuP.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dfuP/nostruct-align/1dfuP.t05-thin90.a2m.gz, have 43475 columns in 184 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gnuA/nostruct-align/1gnuA.t05-thin90.a2m.gz
# 1gnuA.t05-thin90.a2m with 113 sequences, total weight= 22.8371 avg weight= 0.202098 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gnuA/info/1gnuA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gnuA/nostruct-align/1gnuA.t05-thin90.a2m.gz, have 43592 columns in 185 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tjyA/nostruct-align/1tjyA.t05-thin90.a2m.gz
# 1tjyA.t05-thin90.a2m with 2045 sequences, total weight= 2045 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.983638 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tjyA/info/1tjyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tjyA/nostruct-align/1tjyA.t05-thin90.a2m.gz, have 43908 columns in 186 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vj2A/nostruct-align/1vj2A.t05-thin90.a2m.gz
# 1vj2A.t05-thin90.a2m with 1943 sequences, total weight= 1943 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.872961 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vj2A/info/1vj2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vj2A/nostruct-align/1vj2A.t05-thin90.a2m.gz, have 44022 columns in 187 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qwrA/nostruct-align/1qwrA.t05-thin90.a2m.gz
# 1qwrA.t05-thin90.a2m with 192 sequences, total weight= 81.9918 avg weight= 0.427041 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30129 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qwrA/info/1qwrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qwrA/nostruct-align/1qwrA.t05-thin90.a2m.gz, have 44337 columns in 188 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1smoA/nostruct-align/1smoA.t05-thin90.a2m.gz
# 1smoA.t05-thin90.a2m with 12166 sequences, total weight= 29.908 avg weight= 0.00245832 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1smoA/info/1smoA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1smoA/nostruct-align/1smoA.t05-thin90.a2m.gz, have 44450 columns in 189 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gcqC/nostruct-align/1gcqC.t05-thin90.a2m.gz
# 1gcqC.t05-thin90.a2m with 717 sequences, total weight= 104.907 avg weight= 0.146314 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31374 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gcqC/info/1gcqC.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gcqC/nostruct-align/1gcqC.t05-thin90.a2m.gz, have 44519 columns in 190 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uwkA/nostruct-align/1uwkA.t05-thin90.a2m.gz
# 1uwkA.t05-thin90.a2m with 103 sequences, total weight= 6.79497 avg weight= 0.0659705 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uwkA/info/1uwkA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uwkA/nostruct-align/1uwkA.t05-thin90.a2m.gz, have 45073 columns in 191 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nr0A/nostruct-align/1nr0A.t05-thin90.a2m.gz
# 1nr0A.t05-thin90.a2m with 8795 sequences, total weight= 8795 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.930939 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nr0A/info/1nr0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nr0A/nostruct-align/1nr0A.t05-thin90.a2m.gz, have 45683 columns in 192 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vyrA/nostruct-align/1vyrA.t05-thin90.a2m.gz
# 1vyrA.t05-thin90.a2m with 730 sequences, total weight= 136.573 avg weight= 0.187087 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30887 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vyrA/info/1vyrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vyrA/nostruct-align/1vyrA.t05-thin90.a2m.gz, have 46046 columns in 193 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nlnA/nostruct-align/1nlnA.t05-thin90.a2m.gz
# 1nlnA.t05-thin90.a2m with 37 sequences, total weight= 6.70926 avg weight= 0.181331 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nlnA/info/1nlnA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nlnA/nostruct-align/1nlnA.t05-thin90.a2m.gz, have 46249 columns in 194 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oi7A/nostruct-align/1oi7A.t05-thin90.a2m.gz
# 1oi7A.t05-thin90.a2m with 516 sequences, total weight= 179.112 avg weight= 0.347116 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30655 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oi7A/info/1oi7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oi7A/nostruct-align/1oi7A.t05-thin90.a2m.gz, have 46519 columns in 195 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hdhA/nostruct-align/1hdhA.t05-thin90.a2m.gz
# 1hdhA.t05-thin90.a2m with 1422 sequences, total weight= 1422 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.880164 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hdhA/info/1hdhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hdhA/nostruct-align/1hdhA.t05-thin90.a2m.gz, have 47044 columns in 196 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l7lA/nostruct-align/1l7lA.t05-thin90.a2m.gz
# 1l7lA.t05-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0258 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l7lA/info/1l7lA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l7lA/nostruct-align/1l7lA.t05-thin90.a2m.gz, have 47165 columns in 197 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v77A/nostruct-align/1v77A.t05-thin90.a2m.gz
# 1v77A.t05-thin90.a2m with 91 sequences, total weight= 91 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1161 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v77A/info/1v77A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v77A/nostruct-align/1v77A.t05-thin90.a2m.gz, have 47367 columns in 198 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sdsA/nostruct-align/1sdsA.t05-thin90.a2m.gz
# 1sdsA.t05-thin90.a2m with 426 sequences, total weight= 426 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29601 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sdsA/info/1sdsA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sdsA/nostruct-align/1sdsA.t05-thin90.a2m.gz, have 47482 columns in 199 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kolA/nostruct-align/1kolA.t05-thin90.a2m.gz
# 1kolA.t05-thin90.a2m with 3801 sequences, total weight= 3801 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0731 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kolA/info/1kolA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kolA/nostruct-align/1kolA.t05-thin90.a2m.gz, have 47878 columns in 200 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r9dA/nostruct-align/1r9dA.t05-thin90.a2m.gz
# 1r9dA.t05-thin90.a2m with 135 sequences, total weight= 78.4146 avg weight= 0.580849 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r9dA/info/1r9dA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r9dA/nostruct-align/1r9dA.t05-thin90.a2m.gz, have 48664 columns in 201 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dusA/nostruct-align/1dusA.t05-thin90.a2m.gz
# 1dusA.t05-thin90.a2m with 11459 sequences, total weight= 11459 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.674378 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dusA/info/1dusA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dusA/nostruct-align/1dusA.t05-thin90.a2m.gz, have 48858 columns in 202 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1viaA/nostruct-align/1viaA.t05-thin90.a2m.gz
# 1viaA.t05-thin90.a2m with 5543 sequences, total weight= 5543 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.799972 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1viaA/info/1viaA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1viaA/nostruct-align/1viaA.t05-thin90.a2m.gz, have 49019 columns in 203 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l9lA/nostruct-align/1l9lA.t05-thin90.a2m.gz
# 1l9lA.t05-thin90.a2m with 6 sequences, total weight= 3.75355 avg weight= 0.625592 14 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l9lA/info/1l9lA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l9lA/nostruct-align/1l9lA.t05-thin90.a2m.gz, have 49093 columns in 204 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c3pA/nostruct-align/1c3pA.t05-thin90.a2m.gz
# 1c3pA.t05-thin90.a2m with 555 sequences, total weight= 390.998 avg weight= 0.704501 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30535 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c3pA/info/1c3pA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1c3pA/nostruct-align/1c3pA.t05-thin90.a2m.gz, have 49465 columns in 205 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vlpA/nostruct-align/1vlpA.t05-thin90.a2m.gz
# 1vlpA.t05-thin90.a2m with 273 sequences, total weight= 120.207 avg weight= 0.440317 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30149 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vlpA/info/1vlpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vlpA/nostruct-align/1vlpA.t05-thin90.a2m.gz, have 49883 columns in 206 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hfeS/nostruct-align/1hfeS.t05-thin90.a2m.gz
# 1hfeS.t05-thin90.a2m with 43 sequences, total weight= 16.713 avg weight= 0.388674 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hfeS/info/1hfeS.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hfeS/nostruct-align/1hfeS.t05-thin90.a2m.gz, have 49971 columns in 207 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h03P/nostruct-align/1h03P.t05-thin90.a2m.gz
# 1h03P.t05-thin90.a2m with 1880 sequences, total weight= 1880 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10471 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h03P/info/1h03P.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h03P/nostruct-align/1h03P.t05-thin90.a2m.gz, have 50096 columns in 208 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vjpA/nostruct-align/1vjpA.t05-thin90.a2m.gz
# 1vjpA.t05-thin90.a2m with 104 sequences, total weight= 23.4123 avg weight= 0.225119 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vjpA/info/1vjpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vjpA/nostruct-align/1vjpA.t05-thin90.a2m.gz, have 50478 columns in 209 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w4xA/nostruct-align/1w4xA.t05-thin90.a2m.gz
# 1w4xA.t05-thin90.a2m with 8466 sequences, total weight= 8466 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01143 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w4xA/info/1w4xA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w4xA/nostruct-align/1w4xA.t05-thin90.a2m.gz, have 51011 columns in 210 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o66A/nostruct-align/1o66A.t05-thin90.a2m.gz
# 1o66A.t05-thin90.a2m with 216 sequences, total weight= 10.8988 avg weight= 0.0504575 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o66A/info/1o66A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o66A/nostruct-align/1o66A.t05-thin90.a2m.gz, have 51260 columns in 211 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h6lA/nostruct-align/1h6lA.t05-thin90.a2m.gz
# 1h6lA.t05-thin90.a2m with 39 sequences, total weight= 29.2244 avg weight= 0.749344 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h6lA/info/1h6lA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h6lA/nostruct-align/1h6lA.t05-thin90.a2m.gz, have 51613 columns in 212 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vicA/nostruct-align/1vicA.t05-thin90.a2m.gz
# 1vicA.t05-thin90.a2m with 2630 sequences, total weight= 2630 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00114 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vicA/info/1vicA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vicA/nostruct-align/1vicA.t05-thin90.a2m.gz, have 51868 columns in 213 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bbkL/nostruct-align/2bbkL.t05-thin90.a2m.gz
# 2bbkL.t05-thin90.a2m with 11 sequences, total weight= 2.93114 avg weight= 0.266467 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bbkL/info/2bbkL.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2b/2bbkL/nostruct-align/2bbkL.t05-thin90.a2m.gz, have 51993 columns in 214 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3c/3chbD/nostruct-align/3chbD.t05-thin90.a2m.gz
# 3chbD.t05-thin90.a2m with 7 sequences, total weight= 2.54586 avg weight= 0.363694 9 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3c/3chbD/info/3chbD.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/3c/3chbD/nostruct-align/3chbD.t05-thin90.a2m.gz, have 52096 columns in 215 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1my7A/nostruct-align/1my7A.t05-thin90.a2m.gz
# 1my7A.t05-thin90.a2m with 67 sequences, total weight= 15.4896 avg weight= 0.231187 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1my7A/info/1my7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1my7A/nostruct-align/1my7A.t05-thin90.a2m.gz, have 52203 columns in 216 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nbcA/nostruct-align/1nbcA.t05-thin90.a2m.gz
# 1nbcA.t05-thin90.a2m with 73 sequences, total weight= 39.6383 avg weight= 0.54299 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nbcA/info/1nbcA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nbcA/nostruct-align/1nbcA.t05-thin90.a2m.gz, have 52358 columns in 217 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t6t1/nostruct-align/1t6t1.t05-thin90.a2m.gz
# 1t6t1.t05-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.5933 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t6t1/info/1t6t1.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t6t1/nostruct-align/1t6t1.t05-thin90.a2m.gz, have 52466 columns in 218 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ek6A/nostruct-align/1ek6A.t05-thin90.a2m.gz
# 1ek6A.t05-thin90.a2m with 10872 sequences, total weight= 10872 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.897308 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ek6A/info/1ek6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ek6A/nostruct-align/1ek6A.t05-thin90.a2m.gz, have 52812 columns in 219 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gz8A/nostruct-align/1gz8A.t05-thin90.a2m.gz
# 1gz8A.t05-thin90.a2m with 13031 sequences, total weight= 13031 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0621 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gz8A/info/1gz8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gz8A/nostruct-align/1gz8A.t05-thin90.a2m.gz, have 53103 columns in 220 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fjhA/nostruct-align/1fjhA.t05-thin90.a2m.gz
# 1fjhA.t05-thin90.a2m with 8644 sequences, total weight= 8644 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10181 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fjhA/info/1fjhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fjhA/nostruct-align/1fjhA.t05-thin90.a2m.gz, have 53339 columns in 221 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cb0A/nostruct-align/1cb0A.t05-thin90.a2m.gz
# 1cb0A.t05-thin90.a2m with 696 sequences, total weight= 696 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08304 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cb0A/info/1cb0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cb0A/nostruct-align/1cb0A.t05-thin90.a2m.gz, have 53607 columns in 222 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1obfO/nostruct-align/1obfO.t05-thin90.a2m.gz
# 1obfO.t05-thin90.a2m with 1291 sequences, total weight= 65.1934 avg weight= 0.0504984 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1obfO/info/1obfO.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1obfO/nostruct-align/1obfO.t05-thin90.a2m.gz, have 53942 columns in 223 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1evlA/nostruct-align/1evlA.t05-thin90.a2m.gz
# 1evlA.t05-thin90.a2m with 1688 sequences, total weight= 1688 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11651 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1evlA/info/1evlA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1evlA/nostruct-align/1evlA.t05-thin90.a2m.gz, have 54343 columns in 224 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hyoA/nostruct-align/1hyoA.t05-thin90.a2m.gz
# 1hyoA.t05-thin90.a2m with 776 sequences, total weight= 408.787 avg weight= 0.526788 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30505 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hyoA/info/1hyoA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hyoA/nostruct-align/1hyoA.t05-thin90.a2m.gz, have 54759 columns in 225 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nytA/nostruct-align/1nytA.t05-thin90.a2m.gz
# 1nytA.t05-thin90.a2m with 656 sequences, total weight= 656 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22011 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nytA/info/1nytA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nytA/nostruct-align/1nytA.t05-thin90.a2m.gz, have 55030 columns in 226 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pu6A/nostruct-align/1pu6A.t05-thin90.a2m.gz
# 1pu6A.t05-thin90.a2m with 890 sequences, total weight= 890 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11364 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pu6A/info/1pu6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pu6A/nostruct-align/1pu6A.t05-thin90.a2m.gz, have 55247 columns in 227 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qw9A/nostruct-align/1qw9A.t05-thin90.a2m.gz
# 1qw9A.t05-thin90.a2m with 385 sequences, total weight= 385 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.834444 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qw9A/info/1qw9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qw9A/nostruct-align/1qw9A.t05-thin90.a2m.gz, have 55744 columns in 228 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kqpA/nostruct-align/1kqpA.t05-thin90.a2m.gz
# 1kqpA.t05-thin90.a2m with 1693 sequences, total weight= 1693 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.953497 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kqpA/info/1kqpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kqpA/nostruct-align/1kqpA.t05-thin90.a2m.gz, have 56015 columns in 229 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mb3A/nostruct-align/1mb3A.t05-thin90.a2m.gz
# 1mb3A.t05-thin90.a2m with 8997 sequences, total weight= 8997 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26694 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mb3A/info/1mb3A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mb3A/nostruct-align/1mb3A.t05-thin90.a2m.gz, have 56132 columns in 230 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oalA/nostruct-align/1oalA.t05-thin90.a2m.gz
# 1oalA.t05-thin90.a2m with 392 sequences, total weight= 43.9324 avg weight= 0.112072 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oalA/info/1oalA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oalA/nostruct-align/1oalA.t05-thin90.a2m.gz, have 56283 columns in 231 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mixA/nostruct-align/1mixA.t05-thin90.a2m.gz
# 1mixA.t05-thin90.a2m with 503 sequences, total weight= 503 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09428 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mixA/info/1mixA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mixA/nostruct-align/1mixA.t05-thin90.a2m.gz, have 56489 columns in 232 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p1jA/nostruct-align/1p1jA.t05-thin90.a2m.gz
# 1p1jA.t05-thin90.a2m with 109 sequences, total weight= 27.6159 avg weight= 0.253357 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p1jA/info/1p1jA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p1jA/nostruct-align/1p1jA.t05-thin90.a2m.gz, have 57014 columns in 233 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oh0A/nostruct-align/1oh0A.t05-thin90.a2m.gz
# 1oh0A.t05-thin90.a2m with 751 sequences, total weight= 751 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.833503 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oh0A/info/1oh0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oh0A/nostruct-align/1oh0A.t05-thin90.a2m.gz, have 57139 columns in 234 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1byi/nostruct-align/1byi.t05-thin90.a2m.gz
# 1byi.t05-thin90.a2m with 2798 sequences, total weight= 2798 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.93649 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1byi/info/1byi.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1byi/nostruct-align/1byi.t05-thin90.a2m.gz, have 57363 columns in 235 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/4u/4ubpB/nostruct-align/4ubpB.t05-thin90.a2m.gz
# 4ubpB.t05-thin90.a2m with 127 sequences, total weight= 7.81654 avg weight= 0.0615475 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/4u/4ubpB/info/4ubpB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/4u/4ubpB/nostruct-align/4ubpB.t05-thin90.a2m.gz, have 57485 columns in 236 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fnlA/nostruct-align/1fnlA.t05-thin90.a2m.gz
# 1fnlA.t05-thin90.a2m with 9322 sequences, total weight= 9322 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.903402 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fnlA/info/1fnlA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fnlA/nostruct-align/1fnlA.t05-thin90.a2m.gz, have 57658 columns in 237 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t0tV/nostruct-align/1t0tV.t05-thin90.a2m.gz
# 1t0tV.t05-thin90.a2m with 61 sequences, total weight= 32.8442 avg weight= 0.53843 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t0tV/info/1t0tV.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t0tV/nostruct-align/1t0tV.t05-thin90.a2m.gz, have 57901 columns in 238 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e6uA/nostruct-align/1e6uA.t05-thin90.a2m.gz
# 1e6uA.t05-thin90.a2m with 9722 sequences, total weight= 9722 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.908371 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e6uA/info/1e6uA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e6uA/nostruct-align/1e6uA.t05-thin90.a2m.gz, have 58216 columns in 239 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q5yA/nostruct-align/1q5yA.t05-thin90.a2m.gz
# 1q5yA.t05-thin90.a2m with 52 sequences, total weight= 12.5191 avg weight= 0.240751 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q5yA/info/1q5yA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q5yA/nostruct-align/1q5yA.t05-thin90.a2m.gz, have 58300 columns in 240 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fk5A/nostruct-align/1fk5A.t05-thin90.a2m.gz
# 1fk5A.t05-thin90.a2m with 206 sequences, total weight= 43.0458 avg weight= 0.20896 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3004 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fk5A/info/1fk5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fk5A/nostruct-align/1fk5A.t05-thin90.a2m.gz, have 58393 columns in 241 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r0rI/nostruct-align/1r0rI.t05-thin90.a2m.gz
# 1r0rI.t05-thin90.a2m with 174 sequences, total weight= 24.6345 avg weight= 0.141578 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r0rI/info/1r0rI.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r0rI/nostruct-align/1r0rI.t05-thin90.a2m.gz, have 58444 columns in 242 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k4iA/nostruct-align/1k4iA.t05-thin90.a2m.gz
# 1k4iA.t05-thin90.a2m with 276 sequences, total weight= 14.1887 avg weight= 0.0514082 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k4iA/info/1k4iA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k4iA/nostruct-align/1k4iA.t05-thin90.a2m.gz, have 58660 columns in 243 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lopA/nostruct-align/1lopA.t05-thin90.a2m.gz
# 1lopA.t05-thin90.a2m with 1116 sequences, total weight= 88.0597 avg weight= 0.0789065 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30407 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lopA/info/1lopA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lopA/nostruct-align/1lopA.t05-thin90.a2m.gz, have 58824 columns in 244 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e7wA/nostruct-align/1e7wA.t05-thin90.a2m.gz
# 1e7wA.t05-thin90.a2m with 8538 sequences, total weight= 8538 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18305 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e7wA/info/1e7wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e7wA/nostruct-align/1e7wA.t05-thin90.a2m.gz, have 59091 columns in 245 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t61A/nostruct-align/1t61A.t05-thin90.a2m.gz
# 1t61A.t05-thin90.a2m with 67 sequences, total weight= 5.33407 avg weight= 0.079613 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t61A/info/1t61A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t61A/nostruct-align/1t61A.t05-thin90.a2m.gz, have 59314 columns in 246 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a8d/nostruct-align/1a8d.t05-thin90.a2m.gz
# 1a8d.t05-thin90.a2m with 35 sequences, total weight= 25.5333 avg weight= 0.729524 25 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a8d/info/1a8d.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a8d/nostruct-align/1a8d.t05-thin90.a2m.gz, have 59766 columns in 247 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nthA/nostruct-align/1nthA.t05-thin90.a2m.gz
# 1nthA.t05-thin90.a2m with 5 sequences, total weight= 3.179 avg weight= 0.6358 7 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nthA/info/1nthA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nthA/nostruct-align/1nthA.t05-thin90.a2m.gz, have 60223 columns in 248 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kgdA/nostruct-align/1kgdA.t05-thin90.a2m.gz
# 1kgdA.t05-thin90.a2m with 607 sequences, total weight= 607 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19711 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kgdA/info/1kgdA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kgdA/nostruct-align/1kgdA.t05-thin90.a2m.gz, have 60398 columns in 249 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n0qA/nostruct-align/1n0qA.t05-thin90.a2m.gz
# 1n0qA.t05-thin90.a2m with 8951 sequences, total weight= 8951 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23797 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n0qA/info/1n0qA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n0qA/nostruct-align/1n0qA.t05-thin90.a2m.gz, have 60489 columns in 250 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1px5A/nostruct-align/1px5A.t05-thin90.a2m.gz
# 1px5A.t05-thin90.a2m with 93 sequences, total weight= 26.4036 avg weight= 0.28391 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1px5A/info/1px5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1px5A/nostruct-align/1px5A.t05-thin90.a2m.gz, have 60818 columns in 251 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jzgA/nostruct-align/1jzgA.t05-thin90.a2m.gz
# 1jzgA.t05-thin90.a2m with 32 sequences, total weight= 7.37614 avg weight= 0.230504 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jzgA/info/1jzgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jzgA/nostruct-align/1jzgA.t05-thin90.a2m.gz, have 60946 columns in 252 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i1jA/nostruct-align/1i1jA.t05-thin90.a2m.gz
# 1i1jA.t05-thin90.a2m with 27 sequences, total weight= 8.765 avg weight= 0.32463 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i1jA/info/1i1jA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i1jA/nostruct-align/1i1jA.t05-thin90.a2m.gz, have 61052 columns in 253 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h0hB/nostruct-align/1h0hB.t05-thin90.a2m.gz
# 1h0hB.t05-thin90.a2m with 980 sequences, total weight= 980 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08038 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h0hB/info/1h0hB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h0hB/nostruct-align/1h0hB.t05-thin90.a2m.gz, have 61266 columns in 254 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jm1A/nostruct-align/1jm1A.t05-thin90.a2m.gz
# 1jm1A.t05-thin90.a2m with 906 sequences, total weight= 906 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00965 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jm1A/info/1jm1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jm1A/nostruct-align/1jm1A.t05-thin90.a2m.gz, have 61468 columns in 255 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fna/nostruct-align/1fna.t05-thin90.a2m.gz
# 1fna.t05-thin90.a2m with 2501 sequences, total weight= 2501 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05485 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fna/info/1fna.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fna/nostruct-align/1fna.t05-thin90.a2m.gz, have 61559 columns in 256 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lniA/nostruct-align/1lniA.t05-thin90.a2m.gz
# 1lniA.t05-thin90.a2m with 43 sequences, total weight= 11.3557 avg weight= 0.264086 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lniA/info/1lniA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lniA/nostruct-align/1lniA.t05-thin90.a2m.gz, have 61655 columns in 257 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b9wA/nostruct-align/1b9wA.t05-thin90.a2m.gz
# 1b9wA.t05-thin90.a2m with 26 sequences, total weight= 5.20829 avg weight= 0.200319 25 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b9wA/info/1b9wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1b9wA/nostruct-align/1b9wA.t05-thin90.a2m.gz, have 61744 columns in 258 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eu3A/nostruct-align/1eu3A.t05-thin90.a2m.gz
# 1eu3A.t05-thin90.a2m with 101 sequences, total weight= 49.2401 avg weight= 0.487526 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eu3A/info/1eu3A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eu3A/nostruct-align/1eu3A.t05-thin90.a2m.gz, have 61954 columns in 259 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k7cA/nostruct-align/1k7cA.t05-thin90.a2m.gz
# 1k7cA.t05-thin90.a2m with 940 sequences, total weight= 940 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.814729 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k7cA/info/1k7cA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k7cA/nostruct-align/1k7cA.t05-thin90.a2m.gz, have 62187 columns in 260 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t8kA/nostruct-align/1t8kA.t05-thin90.a2m.gz
# 1t8kA.t05-thin90.a2m with 374 sequences, total weight= 38.9214 avg weight= 0.104068 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30045 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t8kA/info/1t8kA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t8kA/nostruct-align/1t8kA.t05-thin90.a2m.gz, have 62264 columns in 261 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1ml4A/nostruct-align/1ml4A.t05-thin90.a2m.gz
# 1ml4A.t05-thin90.a2m with 601 sequences, total weight= 41.9735 avg weight= 0.0698394 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30033 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1ml4A/info/1ml4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1ml4A/nostruct-align/1ml4A.t05-thin90.a2m.gz, have 62571 columns in 262 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m1fA/nostruct-align/1m1fA.t05-thin90.a2m.gz
# 1m1fA.t05-thin90.a2m with 180 sequences, total weight= 164.486 avg weight= 0.913812 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30057 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m1fA/info/1m1fA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m1fA/nostruct-align/1m1fA.t05-thin90.a2m.gz, have 62678 columns in 263 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n40A/nostruct-align/1n40A.t05-thin90.a2m.gz
# 1n40A.t05-thin90.a2m with 4473 sequences, total weight= 4473 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02789 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n40A/info/1n40A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n40A/nostruct-align/1n40A.t05-thin90.a2m.gz, have 63072 columns in 264 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qhoA/nostruct-align/1qhoA.t05-thin90.a2m.gz
# 1qhoA.t05-thin90.a2m with 1810 sequences, total weight= 1810 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28369 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qhoA/info/1qhoA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qhoA/nostruct-align/1qhoA.t05-thin90.a2m.gz, have 63758 columns in 265 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o7qA/nostruct-align/1o7qA.t05-thin90.a2m.gz
# 1o7qA.t05-thin90.a2m with 67 sequences, total weight= 11.5316 avg weight= 0.172113 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o7qA/info/1o7qA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o7qA/nostruct-align/1o7qA.t05-thin90.a2m.gz, have 64045 columns in 266 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p3cA/nostruct-align/1p3cA.t05-thin90.a2m.gz
# 1p3cA.t05-thin90.a2m with 3426 sequences, total weight= 3426 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18379 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p3cA/info/1p3cA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p3cA/nostruct-align/1p3cA.t05-thin90.a2m.gz, have 64260 columns in 267 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yacA/nostruct-align/1yacA.t05-thin90.a2m.gz
# 1yacA.t05-thin90.a2m with 733 sequences, total weight= 733 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11743 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yacA/info/1yacA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1y/1yacA/nostruct-align/1yacA.t05-thin90.a2m.gz, have 64464 columns in 268 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mgqA/nostruct-align/1mgqA.t05-thin90.a2m.gz
# 1mgqA.t05-thin90.a2m with 386 sequences, total weight= 76.054 avg weight= 0.197031 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30118 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mgqA/info/1mgqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mgqA/nostruct-align/1mgqA.t05-thin90.a2m.gz, have 64538 columns in 269 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e58A/nostruct-align/1e58A.t05-thin90.a2m.gz
# 1e58A.t05-thin90.a2m with 1364 sequences, total weight= 1364 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.996891 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e58A/info/1e58A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e58A/nostruct-align/1e58A.t05-thin90.a2m.gz, have 64785 columns in 270 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kq3A/nostruct-align/1kq3A.t05-thin90.a2m.gz
# 1kq3A.t05-thin90.a2m with 963 sequences, total weight= 963 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15806 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kq3A/info/1kq3A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kq3A/nostruct-align/1kq3A.t05-thin90.a2m.gz, have 65149 columns in 271 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w3iA/nostruct-align/1w3iA.t05-thin90.a2m.gz
# 1w3iA.t05-thin90.a2m with 652 sequences, total weight= 652 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26539 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w3iA/info/1w3iA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w3iA/nostruct-align/1w3iA.t05-thin90.a2m.gz, have 65442 columns in 272 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uxzA/nostruct-align/1uxzA.t05-thin90.a2m.gz
# 1uxzA.t05-thin90.a2m with 164 sequences, total weight= 129.445 avg weight= 0.789302 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30058 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uxzA/info/1uxzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uxzA/nostruct-align/1uxzA.t05-thin90.a2m.gz, have 65573 columns in 273 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kugA/nostruct-align/1kugA.t05-thin90.a2m.gz
# 1kugA.t05-thin90.a2m with 507 sequences, total weight= 507 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24608 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kugA/info/1kugA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kugA/nostruct-align/1kugA.t05-thin90.a2m.gz, have 65774 columns in 274 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vfyA/nostruct-align/1vfyA.t05-thin90.a2m.gz
# 1vfyA.t05-thin90.a2m with 404 sequences, total weight= 71.1291 avg weight= 0.176062 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30615 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vfyA/info/1vfyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vfyA/nostruct-align/1vfyA.t05-thin90.a2m.gz, have 65841 columns in 275 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r12A/nostruct-align/1r12A.t05-thin90.a2m.gz
# 1r12A.t05-thin90.a2m with 25 sequences, total weight= 14.038 avg weight= 0.561519 25 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r12A/info/1r12A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r12A/nostruct-align/1r12A.t05-thin90.a2m.gz, have 66092 columns in 276 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h72C/nostruct-align/1h72C.t05-thin90.a2m.gz
# 1h72C.t05-thin90.a2m with 1004 sequences, total weight= 1004 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.978875 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h72C/info/1h72C.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h72C/nostruct-align/1h72C.t05-thin90.a2m.gz, have 66388 columns in 277 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1olrA/nostruct-align/1olrA.t05-thin90.a2m.gz
# 1olrA.t05-thin90.a2m with 64 sequences, total weight= 34.5976 avg weight= 0.540588 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1olrA/info/1olrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1olrA/nostruct-align/1olrA.t05-thin90.a2m.gz, have 66612 columns in 278 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nycA/nostruct-align/1nycA.t05-thin90.a2m.gz
# 1nycA.t05-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04307 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nycA/info/1nycA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nycA/nostruct-align/1nycA.t05-thin90.a2m.gz, have 66723 columns in 279 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dqgA/nostruct-align/1dqgA.t05-thin90.a2m.gz
# 1dqgA.t05-thin90.a2m with 46 sequences, total weight= 28.4697 avg weight= 0.618907 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dqgA/info/1dqgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dqgA/nostruct-align/1dqgA.t05-thin90.a2m.gz, have 66857 columns in 280 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gs5A/nostruct-align/1gs5A.t05-thin90.a2m.gz
# 1gs5A.t05-thin90.a2m with 1222 sequences, total weight= 1222 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17965 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gs5A/info/1gs5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gs5A/nostruct-align/1gs5A.t05-thin90.a2m.gz, have 67115 columns in 281 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lfwA/nostruct-align/1lfwA.t05-thin90.a2m.gz
# 1lfwA.t05-thin90.a2m with 1918 sequences, total weight= 1918 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.96866 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lfwA/info/1lfwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lfwA/nostruct-align/1lfwA.t05-thin90.a2m.gz, have 67583 columns in 282 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lwbA/nostruct-align/1lwbA.t05-thin90.a2m.gz
# 1lwbA.t05-thin90.a2m with 18 sequences, total weight= 12.5852 avg weight= 0.699175 25 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lwbA/info/1lwbA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lwbA/nostruct-align/1lwbA.t05-thin90.a2m.gz, have 67705 columns in 283 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/7o/7odcA/nostruct-align/7odcA.t05-thin90.a2m.gz
# 7odcA.t05-thin90.a2m with 964 sequences, total weight= 964 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12398 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/7o/7odcA/info/7odcA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/7o/7odcA/nostruct-align/7odcA.t05-thin90.a2m.gz, have 68092 columns in 284 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nls/nostruct-align/1nls.t05-thin90.a2m.gz
# 1nls.t05-thin90.a2m with 494 sequences, total weight= 172.555 avg weight= 0.349302 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30308 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nls/info/1nls.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nls/nostruct-align/1nls.t05-thin90.a2m.gz, have 68329 columns in 285 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pq7A/nostruct-align/1pq7A.t05-thin90.a2m.gz
# 1pq7A.t05-thin90.a2m with 2977 sequences, total weight= 1609.68 avg weight= 0.540707 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31821 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pq7A/info/1pq7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pq7A/nostruct-align/1pq7A.t05-thin90.a2m.gz, have 68553 columns in 286 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d8wA/nostruct-align/1d8wA.t05-thin90.a2m.gz
# 1d8wA.t05-thin90.a2m with 168 sequences, total weight= 168 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27874 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d8wA/info/1d8wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d8wA/nostruct-align/1d8wA.t05-thin90.a2m.gz, have 68955 columns in 287 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mtzA/nostruct-align/1mtzA.t05-thin90.a2m.gz
# 1mtzA.t05-thin90.a2m with 7640 sequences, total weight= 7640 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.659322 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mtzA/info/1mtzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mtzA/nostruct-align/1mtzA.t05-thin90.a2m.gz, have 69245 columns in 288 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lam/nostruct-align/1lam.t05-thin90.a2m.gz
# 1lam.t05-thin90.a2m with 386 sequences, total weight= 60.1293 avg weight= 0.155775 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30201 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lam/info/1lam.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lam/nostruct-align/1lam.t05-thin90.a2m.gz, have 69729 columns in 289 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1ltzA/nostruct-align/1ltzA.t05-thin90.a2m.gz
# 1ltzA.t05-thin90.a2m with 124 sequences, total weight= 20.2939 avg weight= 0.163661 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1ltzA/info/1ltzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1ltzA/nostruct-align/1ltzA.t05-thin90.a2m.gz, have 70003 columns in 290 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nar/nostruct-align/1nar.t05-thin90.a2m.gz
# 1nar.t05-thin90.a2m with 934 sequences, total weight= 934 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07921 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nar/info/1nar.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nar/nostruct-align/1nar.t05-thin90.a2m.gz, have 70292 columns in 291 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mof/nostruct-align/1mof.t05-thin90.a2m.gz
# 1mof.t05-thin90.a2m with 43 sequences, total weight= 6.01461 avg weight= 0.139875 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mof/info/1mof.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mof/nostruct-align/1mof.t05-thin90.a2m.gz, have 70345 columns in 292 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kyfA/nostruct-align/1kyfA.t05-thin90.a2m.gz
# 1kyfA.t05-thin90.a2m with 62 sequences, total weight= 62 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10968 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kyfA/info/1kyfA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kyfA/nostruct-align/1kyfA.t05-thin90.a2m.gz, have 70592 columns in 293 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dozA/nostruct-align/1dozA.t05-thin90.a2m.gz
# 1dozA.t05-thin90.a2m with 283 sequences, total weight= 109.058 avg weight= 0.385362 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30337 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dozA/info/1dozA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dozA/nostruct-align/1dozA.t05-thin90.a2m.gz, have 70901 columns in 294 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lfpA/nostruct-align/1lfpA.t05-thin90.a2m.gz
# 1lfpA.t05-thin90.a2m with 256 sequences, total weight= 23.3697 avg weight= 0.0912879 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lfpA/info/1lfpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lfpA/nostruct-align/1lfpA.t05-thin90.a2m.gz, have 71144 columns in 295 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3h/3htsB/nostruct-align/3htsB.t05-thin90.a2m.gz
# 3htsB.t05-thin90.a2m with 187 sequences, total weight= 27.4131 avg weight= 0.146594 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3h/3htsB/info/3htsB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/3h/3htsB/nostruct-align/3htsB.t05-thin90.a2m.gz, have 71226 columns in 296 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hnjA/nostruct-align/1hnjA.t05-thin90.a2m.gz
# 1hnjA.t05-thin90.a2m with 3833 sequences, total weight= 3833 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07678 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hnjA/info/1hnjA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hnjA/nostruct-align/1hnjA.t05-thin90.a2m.gz, have 71543 columns in 297 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m55A/nostruct-align/1m55A.t05-thin90.a2m.gz
# 1m55A.t05-thin90.a2m with 12 sequences, total weight= 12 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22207 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m55A/info/1m55A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m55A/nostruct-align/1m55A.t05-thin90.a2m.gz, have 71736 columns in 298 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jfbA/nostruct-align/1jfbA.t05-thin90.a2m.gz
# 1jfbA.t05-thin90.a2m with 4492 sequences, total weight= 4492 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01106 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jfbA/info/1jfbA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jfbA/nostruct-align/1jfbA.t05-thin90.a2m.gz, have 72135 columns in 299 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o7iA/nostruct-align/1o7iA.t05-thin90.a2m.gz
# 1o7iA.t05-thin90.a2m with 128 sequences, total weight= 128 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21787 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o7iA/info/1o7iA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o7iA/nostruct-align/1o7iA.t05-thin90.a2m.gz, have 72250 columns in 300 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n93X/nostruct-align/1n93X.t05-thin90.a2m.gz
# 1n93X.t05-thin90.a2m with 14 sequences, total weight= 7.03119 avg weight= 0.502228 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n93X/info/1n93X.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n93X/nostruct-align/1n93X.t05-thin90.a2m.gz, have 72585 columns in 301 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qq5A/nostruct-align/1qq5A.t05-thin90.a2m.gz
# 1qq5A.t05-thin90.a2m with 3915 sequences, total weight= 3915 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.795187 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qq5A/info/1qq5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qq5A/nostruct-align/1qq5A.t05-thin90.a2m.gz, have 72830 columns in 302 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f8eA/nostruct-align/1f8eA.t05-thin90.a2m.gz
# 1f8eA.t05-thin90.a2m with 67 sequences, total weight= 5.94595 avg weight= 0.0887455 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f8eA/info/1f8eA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f8eA/nostruct-align/1f8eA.t05-thin90.a2m.gz, have 73218 columns in 303 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f9zA/nostruct-align/1f9zA.t05-thin90.a2m.gz
# 1f9zA.t05-thin90.a2m with 2607 sequences, total weight= 2607 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.886827 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f9zA/info/1f9zA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f9zA/nostruct-align/1f9zA.t05-thin90.a2m.gz, have 73346 columns in 304 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r5rA/nostruct-align/1r5rA.t05-thin90.a2m.gz
# 1r5rA.t05-thin90.a2m with 263 sequences, total weight= 263 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.955237 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r5rA/info/1r5rA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r5rA/nostruct-align/1r5rA.t05-thin90.a2m.gz, have 73463 columns in 305 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uoyA/nostruct-align/1uoyA.t05-thin90.a2m.gz
# 1uoyA.t05-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15982 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uoyA/info/1uoyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uoyA/nostruct-align/1uoyA.t05-thin90.a2m.gz, have 73527 columns in 306 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kzqA/nostruct-align/1kzqA.t05-thin90.a2m.gz
# 1kzqA.t05-thin90.a2m with 31 sequences, total weight= 26.1359 avg weight= 0.843094 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kzqA/info/1kzqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kzqA/nostruct-align/1kzqA.t05-thin90.a2m.gz, have 73780 columns in 307 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ow1A/nostruct-align/1ow1A.t05-thin90.a2m.gz
# 1ow1A.t05-thin90.a2m with 29 sequences, total weight= 11.8998 avg weight= 0.410336 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ow1A/info/1ow1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ow1A/nostruct-align/1ow1A.t05-thin90.a2m.gz, have 73947 columns in 308 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m1nB/nostruct-align/1m1nB.t05-thin90.a2m.gz
# 1m1nB.t05-thin90.a2m with 525 sequences, total weight= 525 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23745 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m1nB/info/1m1nB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m1nB/nostruct-align/1m1nB.t05-thin90.a2m.gz, have 74469 columns in 309 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iirA/nostruct-align/1iirA.t05-thin90.a2m.gz
# 1iirA.t05-thin90.a2m with 3022 sequences, total weight= 3022 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.829997 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iirA/info/1iirA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iirA/nostruct-align/1iirA.t05-thin90.a2m.gz, have 74851 columns in 310 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j54A/nostruct-align/1j54A.t05-thin90.a2m.gz
# 1j54A.t05-thin90.a2m with 1075 sequences, total weight= 1075 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0693 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j54A/info/1j54A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j54A/nostruct-align/1j54A.t05-thin90.a2m.gz, have 75025 columns in 311 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qw2A/nostruct-align/1qw2A.t05-thin90.a2m.gz
# 1qw2A.t05-thin90.a2m with 17 sequences, total weight= 6.72372 avg weight= 0.395513 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qw2A/info/1qw2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qw2A/nostruct-align/1qw2A.t05-thin90.a2m.gz, have 75127 columns in 312 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vkfA/nostruct-align/1vkfA.t05-thin90.a2m.gz
# 1vkfA.t05-thin90.a2m with 30 sequences, total weight= 9.28543 avg weight= 0.309514 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vkfA/info/1vkfA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vkfA/nostruct-align/1vkfA.t05-thin90.a2m.gz, have 75299 columns in 313 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v4vA/nostruct-align/1v4vA.t05-thin90.a2m.gz
# 1v4vA.t05-thin90.a2m with 5826 sequences, total weight= 5826 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.729748 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v4vA/info/1v4vA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v4vA/nostruct-align/1v4vA.t05-thin90.a2m.gz, have 75672 columns in 314 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wd3A/nostruct-align/1wd3A.t05-thin90.a2m.gz
# 1wd3A.t05-thin90.a2m with 64 sequences, total weight= 64 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29849 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wd3A/info/1wd3A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wd3A/nostruct-align/1wd3A.t05-thin90.a2m.gz, have 76154 columns in 315 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iuaA/nostruct-align/1iuaA.t05-thin90.a2m.gz
# 1iuaA.t05-thin90.a2m with 37 sequences, total weight= 14.0521 avg weight= 0.379787 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iuaA/info/1iuaA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iuaA/nostruct-align/1iuaA.t05-thin90.a2m.gz, have 76237 columns in 316 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r7aA/nostruct-align/1r7aA.t05-thin90.a2m.gz
# 1r7aA.t05-thin90.a2m with 1800 sequences, total weight= 1800 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00682 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r7aA/info/1r7aA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r7aA/nostruct-align/1r7aA.t05-thin90.a2m.gz, have 76741 columns in 317 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lqtA/nostruct-align/1lqtA.t05-thin90.a2m.gz
# 1lqtA.t05-thin90.a2m with 8070 sequences, total weight= 8070 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.806846 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lqtA/info/1lqtA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lqtA/nostruct-align/1lqtA.t05-thin90.a2m.gz, have 77193 columns in 318 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qsgA/nostruct-align/1qsgA.t05-thin90.a2m.gz
# 1qsgA.t05-thin90.a2m with 8761 sequences, total weight= 8761 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16282 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qsgA/info/1qsgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qsgA/nostruct-align/1qsgA.t05-thin90.a2m.gz, have 77451 columns in 319 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1amf/nostruct-align/1amf.t05-thin90.a2m.gz
# 1amf.t05-thin90.a2m with 2095 sequences, total weight= 2095 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.870156 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1amf/info/1amf.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1amf/nostruct-align/1amf.t05-thin90.a2m.gz, have 77682 columns in 320 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1llnA/nostruct-align/1llnA.t05-thin90.a2m.gz
# 1llnA.t05-thin90.a2m with 139 sequences, total weight= 139 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20695 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1llnA/info/1llnA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1llnA/nostruct-align/1llnA.t05-thin90.a2m.gz, have 77944 columns in 321 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jyhA/nostruct-align/1jyhA.t05-thin90.a2m.gz
# 1jyhA.t05-thin90.a2m with 251 sequences, total weight= 251 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.998713 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jyhA/info/1jyhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jyhA/nostruct-align/1jyhA.t05-thin90.a2m.gz, have 78099 columns in 322 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hdoA/nostruct-align/1hdoA.t05-thin90.a2m.gz
# 1hdoA.t05-thin90.a2m with 12956 sequences, total weight= 12956 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.970473 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hdoA/info/1hdoA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hdoA/nostruct-align/1hdoA.t05-thin90.a2m.gz, have 78304 columns in 323 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1udzA/nostruct-align/1udzA.t05-thin90.a2m.gz
# 1udzA.t05-thin90.a2m with 997 sequences, total weight= 373.273 avg weight= 0.374396 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31782 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1udzA/info/1udzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1udzA/nostruct-align/1udzA.t05-thin90.a2m.gz, have 78483 columns in 324 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1luzA/nostruct-align/1luzA.t05-thin90.a2m.gz
# 1luzA.t05-thin90.a2m with 12 sequences, total weight= 7.01789 avg weight= 0.584824 20 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1luzA/info/1luzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1luzA/nostruct-align/1luzA.t05-thin90.a2m.gz, have 78568 columns in 325 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rdqE/nostruct-align/1rdqE.t05-thin90.a2m.gz
# 1rdqE.t05-thin90.a2m with 14224 sequences, total weight= 14224 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.974321 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rdqE/info/1rdqE.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rdqE/nostruct-align/1rdqE.t05-thin90.a2m.gz, have 78910 columns in 326 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dosA/nostruct-align/1dosA.t05-thin90.a2m.gz
# 1dosA.t05-thin90.a2m with 312 sequences, total weight= 52.2902 avg weight= 0.167597 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dosA/info/1dosA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dosA/nostruct-align/1dosA.t05-thin90.a2m.gz, have 79268 columns in 327 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iqzA/nostruct-align/1iqzA.t05-thin90.a2m.gz
# 1iqzA.t05-thin90.a2m with 246 sequences, total weight= 246 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2121 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iqzA/info/1iqzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iqzA/nostruct-align/1iqzA.t05-thin90.a2m.gz, have 79349 columns in 328 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iomA/nostruct-align/1iomA.t05-thin90.a2m.gz
# 1iomA.t05-thin90.a2m with 493 sequences, total weight= 93.8655 avg weight= 0.190396 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30305 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iomA/info/1iomA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iomA/nostruct-align/1iomA.t05-thin90.a2m.gz, have 79723 columns in 329 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n4wA/nostruct-align/1n4wA.t05-thin90.a2m.gz
# 1n4wA.t05-thin90.a2m with 6209 sequences, total weight= 6209 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.88381 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n4wA/info/1n4wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n4wA/nostruct-align/1n4wA.t05-thin90.a2m.gz, have 80221 columns in 330 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d7pM/nostruct-align/1d7pM.t05-thin90.a2m.gz
# 1d7pM.t05-thin90.a2m with 414 sequences, total weight= 71.0272 avg weight= 0.171563 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30155 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d7pM/info/1d7pM.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d7pM/nostruct-align/1d7pM.t05-thin90.a2m.gz, have 80380 columns in 331 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1ja9A/nostruct-align/1ja9A.t05-thin90.a2m.gz
# 1ja9A.t05-thin90.a2m with 9198 sequences, total weight= 9198 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14105 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1ja9A/info/1ja9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1ja9A/nostruct-align/1ja9A.t05-thin90.a2m.gz, have 80639 columns in 332 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hdkA/nostruct-align/1hdkA.t05-thin90.a2m.gz
# 1hdkA.t05-thin90.a2m with 323 sequences, total weight= 323 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2974 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hdkA/info/1hdkA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hdkA/nostruct-align/1hdkA.t05-thin90.a2m.gz, have 80778 columns in 333 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ii5A/nostruct-align/1ii5A.t05-thin90.a2m.gz
# 1ii5A.t05-thin90.a2m with 2189 sequences, total weight= 2189 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.948397 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ii5A/info/1ii5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ii5A/nostruct-align/1ii5A.t05-thin90.a2m.gz, have 80999 columns in 334 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bkf/nostruct-align/1bkf.t05-thin90.a2m.gz
# 1bkf.t05-thin90.a2m with 782 sequences, total weight= 86.8342 avg weight= 0.111041 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30471 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bkf/info/1bkf.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bkf/nostruct-align/1bkf.t05-thin90.a2m.gz, have 81106 columns in 335 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bebA/nostruct-align/1bebA.t05-thin90.a2m.gz
# 1bebA.t05-thin90.a2m with 433 sequences, total weight= 433 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00479 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bebA/info/1bebA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bebA/nostruct-align/1bebA.t05-thin90.a2m.gz, have 81262 columns in 336 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m22A/nostruct-align/1m22A.t05-thin90.a2m.gz
# 1m22A.t05-thin90.a2m with 977 sequences, total weight= 977 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2905 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m22A/info/1m22A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m22A/nostruct-align/1m22A.t05-thin90.a2m.gz, have 81749 columns in 337 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oafA/nostruct-align/1oafA.t05-thin90.a2m.gz
# 1oafA.t05-thin90.a2m with 849 sequences, total weight= 70.4629 avg weight= 0.0829952 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30258 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oafA/info/1oafA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oafA/nostruct-align/1oafA.t05-thin90.a2m.gz, have 81999 columns in 338 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vd5A/nostruct-align/1vd5A.t05-thin90.a2m.gz
# 1vd5A.t05-thin90.a2m with 371 sequences, total weight= 371 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.873461 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vd5A/info/1vd5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vd5A/nostruct-align/1vd5A.t05-thin90.a2m.gz, have 82376 columns in 339 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dp7P/nostruct-align/1dp7P.t05-thin90.a2m.gz
# 1dp7P.t05-thin90.a2m with 53 sequences, total weight= 10.915 avg weight= 0.205944 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dp7P/info/1dp7P.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dp7P/nostruct-align/1dp7P.t05-thin90.a2m.gz, have 82452 columns in 340 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v2bA/nostruct-align/1v2bA.t05-thin90.a2m.gz
# 1v2bA.t05-thin90.a2m with 58 sequences, total weight= 35.5385 avg weight= 0.612733 43 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v2bA/info/1v2bA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v2bA/nostruct-align/1v2bA.t05-thin90.a2m.gz, have 82600 columns in 341 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d02A/nostruct-align/1d02A.t05-thin90.a2m.gz
# 1d02A.t05-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.615068 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d02A/info/1d02A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d02A/nostruct-align/1d02A.t05-thin90.a2m.gz, have 82797 columns in 342 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gp6A/nostruct-align/1gp6A.t05-thin90.a2m.gz
# 1gp6A.t05-thin90.a2m with 804 sequences, total weight= 804 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2267 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gp6A/info/1gp6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gp6A/nostruct-align/1gp6A.t05-thin90.a2m.gz, have 83146 columns in 343 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rz2A/nostruct-align/1rz2A.t05-thin90.a2m.gz
# 1rz2A.t05-thin90.a2m with 12 sequences, total weight= 9.51712 avg weight= 0.793093 20 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rz2A/info/1rz2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rz2A/nostruct-align/1rz2A.t05-thin90.a2m.gz, have 83360 columns in 344 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1io7A/nostruct-align/1io7A.t05-thin90.a2m.gz
# 1io7A.t05-thin90.a2m with 4414 sequences, total weight= 4414 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02574 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1io7A/info/1io7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1io7A/nostruct-align/1io7A.t05-thin90.a2m.gz, have 83726 columns in 345 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uwwA/nostruct-align/1uwwA.t05-thin90.a2m.gz
# 1uwwA.t05-thin90.a2m with 22 sequences, total weight= 12.9557 avg weight= 0.588896 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uwwA/info/1uwwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uwwA/nostruct-align/1uwwA.t05-thin90.a2m.gz, have 83910 columns in 346 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pinA/nostruct-align/1pinA.t05-thin90.a2m.gz
# 1pinA.t05-thin90.a2m with 592 sequences, total weight= 592 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17235 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pinA/info/1pinA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pinA/nostruct-align/1pinA.t05-thin90.a2m.gz, have 84063 columns in 347 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h75A/nostruct-align/1h75A.t05-thin90.a2m.gz
# 1h75A.t05-thin90.a2m with 1281 sequences, total weight= 1281 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20569 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h75A/info/1h75A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h75A/nostruct-align/1h75A.t05-thin90.a2m.gz, have 84139 columns in 348 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ispA/nostruct-align/1ispA.t05-thin90.a2m.gz
# 1ispA.t05-thin90.a2m with 7701 sequences, total weight= 7701 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.591737 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ispA/info/1ispA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ispA/nostruct-align/1ispA.t05-thin90.a2m.gz, have 84318 columns in 349 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qh5A/nostruct-align/1qh5A.t05-thin90.a2m.gz
# 1qh5A.t05-thin90.a2m with 3069 sequences, total weight= 3069 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.876056 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qh5A/info/1qh5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qh5A/nostruct-align/1qh5A.t05-thin90.a2m.gz, have 84578 columns in 350 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cs1A/nostruct-align/1cs1A.t05-thin90.a2m.gz
# 1cs1A.t05-thin90.a2m with 6839 sequences, total weight= 6839 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.9139 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cs1A/info/1cs1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cs1A/nostruct-align/1cs1A.t05-thin90.a2m.gz, have 84962 columns in 351 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v0wA/nostruct-align/1v0wA.t05-thin90.a2m.gz
# 1v0wA.t05-thin90.a2m with 931 sequences, total weight= 931 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.886618 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v0wA/info/1v0wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v0wA/nostruct-align/1v0wA.t05-thin90.a2m.gz, have 85458 columns in 352 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n08A/nostruct-align/1n08A.t05-thin90.a2m.gz
# 1n08A.t05-thin90.a2m with 280 sequences, total weight= 49.5791 avg weight= 0.177068 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30096 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n08A/info/1n08A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n08A/nostruct-align/1n08A.t05-thin90.a2m.gz, have 85612 columns in 353 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lc5A/nostruct-align/1lc5A.t05-thin90.a2m.gz
# 1lc5A.t05-thin90.a2m with 5753 sequences, total weight= 5753 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.908646 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lc5A/info/1lc5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lc5A/nostruct-align/1lc5A.t05-thin90.a2m.gz, have 85967 columns in 354 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r5yA/nostruct-align/1r5yA.t05-thin90.a2m.gz
# 1r5yA.t05-thin90.a2m with 312 sequences, total weight= 81.9942 avg weight= 0.262802 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30091 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r5yA/info/1r5yA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r5yA/nostruct-align/1r5yA.t05-thin90.a2m.gz, have 86328 columns in 355 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cl8A/nostruct-align/1cl8A.t05-thin90.a2m.gz
# 1cl8A.t05-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05471 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cl8A/info/1cl8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cl8A/nostruct-align/1cl8A.t05-thin90.a2m.gz, have 86589 columns in 356 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1je0A/nostruct-align/1je0A.t05-thin90.a2m.gz
# 1je0A.t05-thin90.a2m with 863 sequences, total weight= 863 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03319 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1je0A/info/1je0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1je0A/nostruct-align/1je0A.t05-thin90.a2m.gz, have 86815 columns in 357 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gnyA/nostruct-align/1gnyA.t05-thin90.a2m.gz
# 1gnyA.t05-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13668 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gnyA/info/1gnyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gnyA/nostruct-align/1gnyA.t05-thin90.a2m.gz, have 86968 columns in 358 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uwcA/nostruct-align/1uwcA.t05-thin90.a2m.gz
# 1uwcA.t05-thin90.a2m with 1012 sequences, total weight= 1012 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.79225 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uwcA/info/1uwcA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uwcA/nostruct-align/1uwcA.t05-thin90.a2m.gz, have 87229 columns in 359 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ooeA/nostruct-align/1ooeA.t05-thin90.a2m.gz
# 1ooeA.t05-thin90.a2m with 9037 sequences, total weight= 9037 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13793 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ooeA/info/1ooeA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ooeA/nostruct-align/1ooeA.t05-thin90.a2m.gz, have 87464 columns in 360 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o7jA/nostruct-align/1o7jA.t05-thin90.a2m.gz
# 1o7jA.t05-thin90.a2m with 266 sequences, total weight= 79.2631 avg weight= 0.297982 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30181 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o7jA/info/1o7jA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o7jA/nostruct-align/1o7jA.t05-thin90.a2m.gz, have 87789 columns in 361 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uvqA/nostruct-align/1uvqA.t05-thin90.a2m.gz
# 1uvqA.t05-thin90.a2m with 2849 sequences, total weight= 2849 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12673 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uvqA/info/1uvqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uvqA/nostruct-align/1uvqA.t05-thin90.a2m.gz, have 87971 columns in 362 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m6sA/nostruct-align/1m6sA.t05-thin90.a2m.gz
# 1m6sA.t05-thin90.a2m with 8746 sequences, total weight= 8746 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.883503 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m6sA/info/1m6sA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m6sA/nostruct-align/1m6sA.t05-thin90.a2m.gz, have 88314 columns in 363 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vm0A/nostruct-align/1vm0A.t05-thin90.a2m.gz
# 1vm0A.t05-thin90.a2m with 35 sequences, total weight= 14.4911 avg weight= 0.414031 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vm0A/info/1vm0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vm0A/nostruct-align/1vm0A.t05-thin90.a2m.gz, have 88407 columns in 364 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e0cA/nostruct-align/1e0cA.t05-thin90.a2m.gz
# 1e0cA.t05-thin90.a2m with 1653 sequences, total weight= 1653 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.975247 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e0cA/info/1e0cA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e0cA/nostruct-align/1e0cA.t05-thin90.a2m.gz, have 88678 columns in 365 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1usgA/nostruct-align/1usgA.t05-thin90.a2m.gz
# 1usgA.t05-thin90.a2m with 1894 sequences, total weight= 1894 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.849354 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1usgA/info/1usgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1usgA/nostruct-align/1usgA.t05-thin90.a2m.gz, have 89023 columns in 366 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1ga6A/nostruct-align/1ga6A.t05-thin90.a2m.gz
# 1ga6A.t05-thin90.a2m with 1351 sequences, total weight= 1351 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09775 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1ga6A/info/1ga6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1ga6A/nostruct-align/1ga6A.t05-thin90.a2m.gz, have 89392 columns in 367 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1agjA/nostruct-align/1agjA.t05-thin90.a2m.gz
# 1agjA.t05-thin90.a2m with 4052 sequences, total weight= 4052 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05802 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1agjA/info/1agjA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1agjA/nostruct-align/1agjA.t05-thin90.a2m.gz, have 89634 columns in 368 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1se8A/nostruct-align/1se8A.t05-thin90.a2m.gz
# 1se8A.t05-thin90.a2m with 334 sequences, total weight= 87.6645 avg weight= 0.262468 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1se8A/info/1se8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1se8A/nostruct-align/1se8A.t05-thin90.a2m.gz, have 89847 columns in 369 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pot/nostruct-align/1pot.t05-thin90.a2m.gz
# 1pot.t05-thin90.a2m with 2004 sequences, total weight= 2004 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.86163 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pot/info/1pot.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pot/nostruct-align/1pot.t05-thin90.a2m.gz, have 90169 columns in 370 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vie/nostruct-align/1vie.t05-thin90.a2m.gz
# 1vie.t05-thin90.a2m with 3 sequences, total weight= 1.86591 avg weight= 0.621969 10 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vie/info/1vie.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vie/nostruct-align/1vie.t05-thin90.a2m.gz, have 90229 columns in 371 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dk0A/nostruct-align/1dk0A.t05-thin90.a2m.gz
# 1dk0A.t05-thin90.a2m with 6 sequences, total weight= 3.75442 avg weight= 0.625737 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dk0A/info/1dk0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dk0A/nostruct-align/1dk0A.t05-thin90.a2m.gz, have 90402 columns in 372 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r6jA/nostruct-align/1r6jA.t05-thin90.a2m.gz
# 1r6jA.t05-thin90.a2m with 667 sequences, total weight= 116.094 avg weight= 0.174054 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31367 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r6jA/info/1r6jA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r6jA/nostruct-align/1r6jA.t05-thin90.a2m.gz, have 90484 columns in 373 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h7cA/nostruct-align/1h7cA.t05-thin90.a2m.gz
# 1h7cA.t05-thin90.a2m with 44 sequences, total weight= 22.9872 avg weight= 0.522437 37 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h7cA/info/1h7cA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h7cA/nostruct-align/1h7cA.t05-thin90.a2m.gz, have 90587 columns in 374 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1elwA/nostruct-align/1elwA.t05-thin90.a2m.gz
# 1elwA.t05-thin90.a2m with 7177 sequences, total weight= 7177 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.911396 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1elwA/info/1elwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1elwA/nostruct-align/1elwA.t05-thin90.a2m.gz, have 90704 columns in 375 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1aho/nostruct-align/1aho.t05-thin90.a2m.gz
# 1aho.t05-thin90.a2m with 121 sequences, total weight= 12.2227 avg weight= 0.101014 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1aho/info/1aho.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1aho/nostruct-align/1aho.t05-thin90.a2m.gz, have 90768 columns in 376 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oewA/nostruct-align/1oewA.t05-thin90.a2m.gz
# 1oewA.t05-thin90.a2m with 964 sequences, total weight= 964 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24716 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oewA/info/1oewA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oewA/nostruct-align/1oewA.t05-thin90.a2m.gz, have 91096 columns in 377 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rk6A/nostruct-align/1rk6A.t05-thin90.a2m.gz
# 1rk6A.t05-thin90.a2m with 2139 sequences, total weight= 2139 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.88962 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rk6A/info/1rk6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rk6A/nostruct-align/1rk6A.t05-thin90.a2m.gz, have 91570 columns in 378 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o9iA/nostruct-align/1o9iA.t05-thin90.a2m.gz
# 1o9iA.t05-thin90.a2m with 64 sequences, total weight= 16.9984 avg weight= 0.265599 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o9iA/info/1o9iA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o9iA/nostruct-align/1o9iA.t05-thin90.a2m.gz, have 91836 columns in 379 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jboA/nostruct-align/1jboA.t05-thin90.a2m.gz
# 1jboA.t05-thin90.a2m with 268 sequences, total weight= 33.4519 avg weight= 0.12482 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jboA/info/1jboA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jboA/nostruct-align/1jboA.t05-thin90.a2m.gz, have 91998 columns in 380 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1ne9A/nostruct-align/1ne9A.t05-thin90.a2m.gz
# 1ne9A.t05-thin90.a2m with 400 sequences, total weight= 400 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.902759 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1ne9A/info/1ne9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1ne9A/nostruct-align/1ne9A.t05-thin90.a2m.gz, have 92333 columns in 381 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nwaA/nostruct-align/1nwaA.t05-thin90.a2m.gz
# 1nwaA.t05-thin90.a2m with 415 sequences, total weight= 21.4211 avg weight= 0.0516171 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nwaA/info/1nwaA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nwaA/nostruct-align/1nwaA.t05-thin90.a2m.gz, have 92501 columns in 382 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j83A/nostruct-align/1j83A.t05-thin90.a2m.gz
# 1j83A.t05-thin90.a2m with 19 sequences, total weight= 7.04349 avg weight= 0.37071 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j83A/info/1j83A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j83A/nostruct-align/1j83A.t05-thin90.a2m.gz, have 92681 columns in 383 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kqfA/nostruct-align/1kqfA.t05-thin90.a2m.gz
# 1kqfA.t05-thin90.a2m with 1111 sequences, total weight= 1111 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13432 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kqfA/info/1kqfA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kqfA/nostruct-align/1kqfA.t05-thin90.a2m.gz, have 93663 columns in 384 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3p/3proC/nostruct-align/3proC.t05-thin90.a2m.gz
# 3proC.t05-thin90.a2m with 23 sequences, total weight= 14.3458 avg weight= 0.623732 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3p/3proC/info/3proC.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/3p/3proC/nostruct-align/3proC.t05-thin90.a2m.gz, have 93813 columns in 385 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mtyB/nostruct-align/1mtyB.t05-thin90.a2m.gz
# 1mtyB.t05-thin90.a2m with 129 sequences, total weight= 105.461 avg weight= 0.817529 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mtyB/info/1mtyB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mtyB/nostruct-align/1mtyB.t05-thin90.a2m.gz, have 94197 columns in 386 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v7rA/nostruct-align/1v7rA.t05-thin90.a2m.gz
# 1v7rA.t05-thin90.a2m with 296 sequences, total weight= 29.2132 avg weight= 0.0986931 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v7rA/info/1v7rA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v7rA/nostruct-align/1v7rA.t05-thin90.a2m.gz, have 94383 columns in 387 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54E/nostruct-align/1v54E.t05-thin90.a2m.gz
# 1v54E.t05-thin90.a2m with 26 sequences, total weight= 4.91204 avg weight= 0.188925 20 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54E/info/1v54E.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v54E/nostruct-align/1v54E.t05-thin90.a2m.gz, have 94488 columns in 388 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ujpA/nostruct-align/1ujpA.t05-thin90.a2m.gz
# 1ujpA.t05-thin90.a2m with 362 sequences, total weight= 321.735 avg weight= 0.88877 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30149 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ujpA/info/1ujpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ujpA/nostruct-align/1ujpA.t05-thin90.a2m.gz, have 94731 columns in 389 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q4uA/nostruct-align/1q4uA.t05-thin90.a2m.gz
# 1q4uA.t05-thin90.a2m with 989 sequences, total weight= 989 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.953386 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q4uA/info/1q4uA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q4uA/nostruct-align/1q4uA.t05-thin90.a2m.gz, have 94871 columns in 390 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1odzA/nostruct-align/1odzA.t05-thin90.a2m.gz
# 1odzA.t05-thin90.a2m with 82 sequences, total weight= 82 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02496 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1odzA/info/1odzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1odzA/nostruct-align/1odzA.t05-thin90.a2m.gz, have 95250 columns in 391 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h70A/nostruct-align/1h70A.t05-thin90.a2m.gz
# 1h70A.t05-thin90.a2m with 334 sequences, total weight= 334 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1268 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h70A/info/1h70A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h70A/nostruct-align/1h70A.t05-thin90.a2m.gz, have 95505 columns in 392 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nkd/nostruct-align/1nkd.t05-thin90.a2m.gz
# 1nkd.t05-thin90.a2m with 18 sequences, total weight= 4.33675 avg weight= 0.24093 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nkd/info/1nkd.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nkd/nostruct-align/1nkd.t05-thin90.a2m.gz, have 95564 columns in 393 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jatB/nostruct-align/1jatB.t05-thin90.a2m.gz
# 1jatB.t05-thin90.a2m with 885 sequences, total weight= 206.424 avg weight= 0.233247 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31394 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jatB/info/1jatB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jatB/nostruct-align/1jatB.t05-thin90.a2m.gz, have 95696 columns in 394 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ug6A/nostruct-align/1ug6A.t05-thin90.a2m.gz
# 1ug6A.t05-thin90.a2m with 680 sequences, total weight= 83.4614 avg weight= 0.122737 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30255 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ug6A/info/1ug6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ug6A/nostruct-align/1ug6A.t05-thin90.a2m.gz, have 96122 columns in 395 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xfiA/nostruct-align/1xfiA.t05-thin90.a2m.gz
# 1xfiA.t05-thin90.a2m with 114 sequences, total weight= 114 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20136 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xfiA/info/1xfiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xfiA/nostruct-align/1xfiA.t05-thin90.a2m.gz, have 96465 columns in 396 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p4oA/nostruct-align/1p4oA.t05-thin90.a2m.gz
# 1p4oA.t05-thin90.a2m with 13455 sequences, total weight= 13455 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p4oA/info/1p4oA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p4oA/nostruct-align/1p4oA.t05-thin90.a2m.gz, have 96773 columns in 397 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1plc/nostruct-align/1plc.t05-thin90.a2m.gz
# 1plc.t05-thin90.a2m with 301 sequences, total weight= 301 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21528 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1plc/info/1plc.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1plc/nostruct-align/1plc.t05-thin90.a2m.gz, have 96872 columns in 398 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1ajsA/nostruct-align/1ajsA.t05-thin90.a2m.gz
# 1ajsA.t05-thin90.a2m with 4311 sequences, total weight= 4311 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.907136 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1ajsA/info/1ajsA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1ajsA/nostruct-align/1ajsA.t05-thin90.a2m.gz, have 97284 columns in 399 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c3cA/nostruct-align/1c3cA.t05-thin90.a2m.gz
# 1c3cA.t05-thin90.a2m with 948 sequences, total weight= 439.733 avg weight= 0.463853 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31436 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c3cA/info/1c3cA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1c3cA/nostruct-align/1c3cA.t05-thin90.a2m.gz, have 97708 columns in 400 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mzbA/nostruct-align/1mzbA.t05-thin90.a2m.gz
# 1mzbA.t05-thin90.a2m with 486 sequences, total weight= 428.592 avg weight= 0.881877 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30233 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mzbA/info/1mzbA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mzbA/nostruct-align/1mzbA.t05-thin90.a2m.gz, have 97841 columns in 401 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1odmA/nostruct-align/1odmA.t05-thin90.a2m.gz
# 1odmA.t05-thin90.a2m with 808 sequences, total weight= 808 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22781 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1odmA/info/1odmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1odmA/nostruct-align/1odmA.t05-thin90.a2m.gz, have 98170 columns in 402 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cmcA/nostruct-align/1cmcA.t05-thin90.a2m.gz
# 1cmcA.t05-thin90.a2m with 13 sequences, total weight= 2.38786 avg weight= 0.183682 11 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cmcA/info/1cmcA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cmcA/nostruct-align/1cmcA.t05-thin90.a2m.gz, have 98274 columns in 403 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c1kA/nostruct-align/1c1kA.t05-thin90.a2m.gz
# 1c1kA.t05-thin90.a2m with 12 sequences, total weight= 6.3248 avg weight= 0.527067 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c1kA/info/1c1kA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1c1kA/nostruct-align/1c1kA.t05-thin90.a2m.gz, have 98491 columns in 404 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o54A/nostruct-align/1o54A.t05-thin90.a2m.gz
# 1o54A.t05-thin90.a2m with 11880 sequences, total weight= 11880 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.667064 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o54A/info/1o54A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o54A/nostruct-align/1o54A.t05-thin90.a2m.gz, have 98756 columns in 405 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oruA/nostruct-align/1oruA.t05-thin90.a2m.gz
# 1oruA.t05-thin90.a2m with 144 sequences, total weight= 129.297 avg weight= 0.897893 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oruA/info/1oruA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oruA/nostruct-align/1oruA.t05-thin90.a2m.gz, have 98938 columns in 406 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gutA/nostruct-align/1gutA.t05-thin90.a2m.gz
# 1gutA.t05-thin90.a2m with 198 sequences, total weight= 21.0065 avg weight= 0.106093 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gutA/info/1gutA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gutA/nostruct-align/1gutA.t05-thin90.a2m.gz, have 99005 columns in 407 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gxmA/nostruct-align/1gxmA.t05-thin90.a2m.gz
# 1gxmA.t05-thin90.a2m with 207 sequences, total weight= 207 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21709 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gxmA/info/1gxmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gxmA/nostruct-align/1gxmA.t05-thin90.a2m.gz, have 99329 columns in 408 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g55A/nostruct-align/1g55A.t05-thin90.a2m.gz
# 1g55A.t05-thin90.a2m with 548 sequences, total weight= 548 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07135 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g55A/info/1g55A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g55A/nostruct-align/1g55A.t05-thin90.a2m.gz, have 99642 columns in 409 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cqxA/nostruct-align/1cqxA.t05-thin90.a2m.gz
# 1cqxA.t05-thin90.a2m with 1913 sequences, total weight= 1913 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04117 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cqxA/info/1cqxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cqxA/nostruct-align/1cqxA.t05-thin90.a2m.gz, have 100045 columns in 410 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1txlA/nostruct-align/1txlA.t05-thin90.a2m.gz
# 1txlA.t05-thin90.a2m with 30 sequences, total weight= 9.7677 avg weight= 0.32559 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1txlA/info/1txlA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1txlA/nostruct-align/1txlA.t05-thin90.a2m.gz, have 100233 columns in 411 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ud9A/nostruct-align/1ud9A.t05-thin90.a2m.gz
# 1ud9A.t05-thin90.a2m with 220 sequences, total weight= 220 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11006 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ud9A/info/1ud9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ud9A/nostruct-align/1ud9A.t05-thin90.a2m.gz, have 100475 columns in 412 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qjpA/nostruct-align/1qjpA.t05-thin90.a2m.gz
# 1qjpA.t05-thin90.a2m with 284 sequences, total weight= 284 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24112 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qjpA/info/1qjpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qjpA/nostruct-align/1qjpA.t05-thin90.a2m.gz, have 100612 columns in 413 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1of8A/nostruct-align/1of8A.t05-thin90.a2m.gz
# 1of8A.t05-thin90.a2m with 430 sequences, total weight= 38.2898 avg weight= 0.089046 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1of8A/info/1of8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1of8A/nostruct-align/1of8A.t05-thin90.a2m.gz, have 100951 columns in 414 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ufyA/nostruct-align/1ufyA.t05-thin90.a2m.gz
# 1ufyA.t05-thin90.a2m with 40 sequences, total weight= 7.11228 avg weight= 0.177807 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ufyA/info/1ufyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ufyA/nostruct-align/1ufyA.t05-thin90.a2m.gz, have 101072 columns in 415 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qz5A/nostruct-align/1qz5A.t05-thin90.a2m.gz
# 1qz5A.t05-thin90.a2m with 836 sequences, total weight= 304.179 avg weight= 0.36385 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31282 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qz5A/info/1qz5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qz5A/nostruct-align/1qz5A.t05-thin90.a2m.gz, have 101431 columns in 416 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v7wA/nostruct-align/1v7wA.t05-thin90.a2m.gz
# 1v7wA.t05-thin90.a2m with 1050 sequences, total weight= 1050 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.788231 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v7wA/info/1v7wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v7wA/nostruct-align/1v7wA.t05-thin90.a2m.gz, have 102210 columns in 417 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mk0A/nostruct-align/1mk0A.t05-thin90.a2m.gz
# 1mk0A.t05-thin90.a2m with 22 sequences, total weight= 18.9318 avg weight= 0.860538 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mk0A/info/1mk0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mk0A/nostruct-align/1mk0A.t05-thin90.a2m.gz, have 102307 columns in 418 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1euwA/nostruct-align/1euwA.t05-thin90.a2m.gz
# 1euwA.t05-thin90.a2m with 560 sequences, total weight= 560 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28161 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1euwA/info/1euwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1euwA/nostruct-align/1euwA.t05-thin90.a2m.gz, have 102443 columns in 419 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nnfA/nostruct-align/1nnfA.t05-thin90.a2m.gz
# 1nnfA.t05-thin90.a2m with 2166 sequences, total weight= 2166 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.836391 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nnfA/info/1nnfA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nnfA/nostruct-align/1nnfA.t05-thin90.a2m.gz, have 102751 columns in 420 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1ah7/nostruct-align/1ah7.t05-thin90.a2m.gz
# 1ah7.t05-thin90.a2m with 114 sequences, total weight= 114 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08645 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1ah7/info/1ah7.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1ah7/nostruct-align/1ah7.t05-thin90.a2m.gz, have 102996 columns in 421 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i88A/nostruct-align/1i88A.t05-thin90.a2m.gz
# 1i88A.t05-thin90.a2m with 890 sequences, total weight= 890 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13843 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i88A/info/1i88A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i88A/nostruct-align/1i88A.t05-thin90.a2m.gz, have 103385 columns in 422 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iyhA/nostruct-align/1iyhA.t05-thin90.a2m.gz
# 1iyhA.t05-thin90.a2m with 2583 sequences, total weight= 2583 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01934 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iyhA/info/1iyhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iyhA/nostruct-align/1iyhA.t05-thin90.a2m.gz, have 103583 columns in 423 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qksA/nostruct-align/1qksA.t05-thin90.a2m.gz
# 1qksA.t05-thin90.a2m with 325 sequences, total weight= 217.295 avg weight= 0.6686 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30032 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qksA/info/1qksA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qksA/nostruct-align/1qksA.t05-thin90.a2m.gz, have 104142 columns in 424 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3c/3cla/nostruct-align/3cla.t05-thin90.a2m.gz
# 3cla.t05-thin90.a2m with 609 sequences, total weight= 150.278 avg weight= 0.246762 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3077 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3c/3cla/info/3cla.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/3c/3cla/nostruct-align/3cla.t05-thin90.a2m.gz, have 104355 columns in 425 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rzhH/nostruct-align/1rzhH.t05-thin90.a2m.gz
# 1rzhH.t05-thin90.a2m with 16 sequences, total weight= 5.08048 avg weight= 0.31753 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rzhH/info/1rzhH.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rzhH/nostruct-align/1rzhH.t05-thin90.a2m.gz, have 104593 columns in 426 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p1mA/nostruct-align/1p1mA.t05-thin90.a2m.gz
# 1p1mA.t05-thin90.a2m with 2304 sequences, total weight= 2304 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.905706 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p1mA/info/1p1mA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p1mA/nostruct-align/1p1mA.t05-thin90.a2m.gz, have 104997 columns in 427 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n9pA/nostruct-align/1n9pA.t05-thin90.a2m.gz
# 1n9pA.t05-thin90.a2m with 130 sequences, total weight= 33.9149 avg weight= 0.260884 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n9pA/info/1n9pA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n9pA/nostruct-align/1n9pA.t05-thin90.a2m.gz, have 105194 columns in 428 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kqwA/nostruct-align/1kqwA.t05-thin90.a2m.gz
# 1kqwA.t05-thin90.a2m with 287 sequences, total weight= 52.8602 avg weight= 0.184182 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kqwA/info/1kqwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kqwA/nostruct-align/1kqwA.t05-thin90.a2m.gz, have 105328 columns in 429 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tp6A/nostruct-align/1tp6A.t05-thin90.a2m.gz
# 1tp6A.t05-thin90.a2m with 18 sequences, total weight= 9.03154 avg weight= 0.501752 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tp6A/info/1tp6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tp6A/nostruct-align/1tp6A.t05-thin90.a2m.gz, have 105454 columns in 430 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1erw/nostruct-align/1erw.t05-thin90.a2m.gz
# 1erw.t05-thin90.a2m with 3041 sequences, total weight= 3041 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03661 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1erw/info/1erw.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1erw/nostruct-align/1erw.t05-thin90.a2m.gz, have 105559 columns in 431 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q0pA/nostruct-align/1q0pA.t05-thin90.a2m.gz
# 1q0pA.t05-thin90.a2m with 1473 sequences, total weight= 1473 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.998155 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q0pA/info/1q0pA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q0pA/nostruct-align/1q0pA.t05-thin90.a2m.gz, have 105751 columns in 432 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dszA/nostruct-align/1dszA.t05-thin90.a2m.gz
# 1dszA.t05-thin90.a2m with 829 sequences, total weight= 33.2399 avg weight= 0.0400964 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3007 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dszA/info/1dszA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dszA/nostruct-align/1dszA.t05-thin90.a2m.gz, have 105826 columns in 433 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vziA/nostruct-align/1vziA.t05-thin90.a2m.gz
# 1vziA.t05-thin90.a2m with 40 sequences, total weight= 19.3765 avg weight= 0.484411 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vziA/info/1vziA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vziA/nostruct-align/1vziA.t05-thin90.a2m.gz, have 105951 columns in 434 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fxlA/nostruct-align/1fxlA.t05-thin90.a2m.gz
# 1fxlA.t05-thin90.a2m with 4616 sequences, total weight= 4616 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03983 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fxlA/info/1fxlA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fxlA/nostruct-align/1fxlA.t05-thin90.a2m.gz, have 106118 columns in 435 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gmxA/nostruct-align/1gmxA.t05-thin90.a2m.gz
# 1gmxA.t05-thin90.a2m with 2044 sequences, total weight= 2044 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07983 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gmxA/info/1gmxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gmxA/nostruct-align/1gmxA.t05-thin90.a2m.gz, have 106226 columns in 436 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vybA/nostruct-align/1vybA.t05-thin90.a2m.gz
# 1vybA.t05-thin90.a2m with 1618 sequences, total weight= 1618 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.857843 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vybA/info/1vybA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vybA/nostruct-align/1vybA.t05-thin90.a2m.gz, have 106462 columns in 437 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jetA/nostruct-align/1jetA.t05-thin90.a2m.gz
# 1jetA.t05-thin90.a2m with 1456 sequences, total weight= 1456 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05269 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jetA/info/1jetA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jetA/nostruct-align/1jetA.t05-thin90.a2m.gz, have 106979 columns in 438 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gbs/nostruct-align/1gbs.t05-thin90.a2m.gz
# 1gbs.t05-thin90.a2m with 590 sequences, total weight= 590 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16034 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gbs/info/1gbs.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gbs/nostruct-align/1gbs.t05-thin90.a2m.gz, have 107164 columns in 439 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oohA/nostruct-align/1oohA.t05-thin90.a2m.gz
# 1oohA.t05-thin90.a2m with 274 sequences, total weight= 274 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.925042 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oohA/info/1oohA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oohA/nostruct-align/1oohA.t05-thin90.a2m.gz, have 107290 columns in 440 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pz4A/nostruct-align/1pz4A.t05-thin90.a2m.gz
# 1pz4A.t05-thin90.a2m with 139 sequences, total weight= 100.669 avg weight= 0.724238 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3007 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pz4A/info/1pz4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pz4A/nostruct-align/1pz4A.t05-thin90.a2m.gz, have 107403 columns in 441 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d4oA/nostruct-align/1d4oA.t05-thin90.a2m.gz
# 1d4oA.t05-thin90.a2m with 106 sequences, total weight= 5.88128 avg weight= 0.0554837 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d4oA/info/1d4oA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d4oA/nostruct-align/1d4oA.t05-thin90.a2m.gz, have 107580 columns in 442 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qmvA/nostruct-align/1qmvA.t05-thin90.a2m.gz
# 1qmvA.t05-thin90.a2m with 1869 sequences, total weight= 1869 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19686 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qmvA/info/1qmvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qmvA/nostruct-align/1qmvA.t05-thin90.a2m.gz, have 107777 columns in 443 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qgiA/nostruct-align/1qgiA.t05-thin90.a2m.gz
# 1qgiA.t05-thin90.a2m with 22 sequences, total weight= 15.3445 avg weight= 0.697478 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qgiA/info/1qgiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qgiA/nostruct-align/1qgiA.t05-thin90.a2m.gz, have 108036 columns in 444 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gk9A/nostruct-align/1gk9A.t05-thin90.a2m.gz
# 1gk9A.t05-thin90.a2m with 131 sequences, total weight= 131 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26719 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gk9A/info/1gk9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gk9A/nostruct-align/1gk9A.t05-thin90.a2m.gz, have 108244 columns in 445 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dy5A/nostruct-align/1dy5A.t05-thin90.a2m.gz
# 1dy5A.t05-thin90.a2m with 209 sequences, total weight= 50.4072 avg weight= 0.241183 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dy5A/info/1dy5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dy5A/nostruct-align/1dy5A.t05-thin90.a2m.gz, have 108368 columns in 446 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mdc/nostruct-align/1mdc.t05-thin90.a2m.gz
# 1mdc.t05-thin90.a2m with 277 sequences, total weight= 54.5291 avg weight= 0.196856 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mdc/info/1mdc.stride-mixed.near-backbone-11
WARNING: skipping h, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mdc/nostruct-align/1mdc.t05-thin90.a2m.gz, have 108499 columns in 447 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sfsA/nostruct-align/1sfsA.t05-thin90.a2m.gz
# 1sfsA.t05-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.993228 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sfsA/info/1sfsA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sfsA/nostruct-align/1sfsA.t05-thin90.a2m.gz, have 108712 columns in 448 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oi0A/nostruct-align/1oi0A.t05-thin90.a2m.gz
# 1oi0A.t05-thin90.a2m with 222 sequences, total weight= 222 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17449 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oi0A/info/1oi0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oi0A/nostruct-align/1oi0A.t05-thin90.a2m.gz, have 108820 columns in 449 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhvA/nostruct-align/1vhvA.t05-thin90.a2m.gz
# 1vhvA.t05-thin90.a2m with 1173 sequences, total weight= 1173 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10154 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhvA/info/1vhvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vhvA/nostruct-align/1vhvA.t05-thin90.a2m.gz, have 109071 columns in 450 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jf3A/nostruct-align/1jf3A.t05-thin90.a2m.gz
# 1jf3A.t05-thin90.a2m with 935 sequences, total weight= 935 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25612 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jf3A/info/1jf3A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jf3A/nostruct-align/1jf3A.t05-thin90.a2m.gz, have 109218 columns in 451 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mkkA/nostruct-align/1mkkA.t05-thin90.a2m.gz
# 1mkkA.t05-thin90.a2m with 98 sequences, total weight= 26.4031 avg weight= 0.269419 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mkkA/info/1mkkA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mkkA/nostruct-align/1mkkA.t05-thin90.a2m.gz, have 109311 columns in 452 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pyfA/nostruct-align/1pyfA.t05-thin90.a2m.gz
# 1pyfA.t05-thin90.a2m with 1979 sequences, total weight= 1848.91 avg weight= 0.934266 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30195 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pyfA/info/1pyfA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pyfA/nostruct-align/1pyfA.t05-thin90.a2m.gz, have 109622 columns in 453 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n55A/nostruct-align/1n55A.t05-thin90.a2m.gz
# 1n55A.t05-thin90.a2m with 492 sequences, total weight= 28.2481 avg weight= 0.0574148 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n55A/info/1n55A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n55A/nostruct-align/1n55A.t05-thin90.a2m.gz, have 109871 columns in 454 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1aba/nostruct-align/1aba.t05-thin90.a2m.gz
# 1aba.t05-thin90.a2m with 618 sequences, total weight= 380.834 avg weight= 0.616237 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30675 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1aba/info/1aba.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1aba/nostruct-align/1aba.t05-thin90.a2m.gz, have 109958 columns in 455 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1ql0A/nostruct-align/1ql0A.t05-thin90.a2m.gz
# 1ql0A.t05-thin90.a2m with 211 sequences, total weight= 211 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12837 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1ql0A/info/1ql0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1ql0A/nostruct-align/1ql0A.t05-thin90.a2m.gz, have 110199 columns in 456 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gttA/nostruct-align/1gttA.t05-thin90.a2m.gz
# 1gttA.t05-thin90.a2m with 773 sequences, total weight= 23.7319 avg weight= 0.030701 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gttA/info/1gttA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gttA/nostruct-align/1gttA.t05-thin90.a2m.gz, have 110620 columns in 457 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q9uA/nostruct-align/1q9uA.t05-thin90.a2m.gz
# 1q9uA.t05-thin90.a2m with 99 sequences, total weight= 99 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13944 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q9uA/info/1q9uA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q9uA/nostruct-align/1q9uA.t05-thin90.a2m.gz, have 110748 columns in 458 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j71A/nostruct-align/1j71A.t05-thin90.a2m.gz
# 1j71A.t05-thin90.a2m with 968 sequences, total weight= 968 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21867 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j71A/info/1j71A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j71A/nostruct-align/1j71A.t05-thin90.a2m.gz, have 111082 columns in 459 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h32A/nostruct-align/1h32A.t05-thin90.a2m.gz
# 1h32A.t05-thin90.a2m with 850 sequences, total weight= 850 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.948897 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h32A/info/1h32A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h32A/nostruct-align/1h32A.t05-thin90.a2m.gz, have 111343 columns in 460 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gwuA/nostruct-align/1gwuA.t05-thin90.a2m.gz
# 1gwuA.t05-thin90.a2m with 871 sequences, total weight= 103.107 avg weight= 0.118378 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30465 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gwuA/info/1gwuA.stride-mixed.near-backbone-11
WARNING: skipping e, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gwuA/nostruct-align/1gwuA.t05-thin90.a2m.gz, have 111649 columns in 461 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q8fA/nostruct-align/1q8fA.t05-thin90.a2m.gz
# 1q8fA.t05-thin90.a2m with 275 sequences, total weight= 275 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26667 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q8fA/info/1q8fA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q8fA/nostruct-align/1q8fA.t05-thin90.a2m.gz, have 111957 columns in 462 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3l/3lzt/nostruct-align/3lzt.t05-thin90.a2m.gz
# 3lzt.t05-thin90.a2m with 188 sequences, total weight= 22.838 avg weight= 0.121479 42 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3l/3lzt/info/3lzt.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/3l/3lzt/nostruct-align/3lzt.t05-thin90.a2m.gz, have 112086 columns in 463 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kmvA/nostruct-align/1kmvA.t05-thin90.a2m.gz
# 1kmvA.t05-thin90.a2m with 493 sequences, total weight= 493 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19593 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kmvA/info/1kmvA.stride-mixed.near-backbone-11
WARNING: skipping b, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kmvA/nostruct-align/1kmvA.t05-thin90.a2m.gz, have 112271 columns in 464 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nrjA/nostruct-align/1nrjA.t05-thin90.a2m.gz
# 1nrjA.t05-thin90.a2m with 4 sequences, total weight= 3.96601 avg weight= 0.991502 9 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nrjA/info/1nrjA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nrjA/nostruct-align/1nrjA.t05-thin90.a2m.gz, have 112418 columns in 465 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oi6A/nostruct-align/1oi6A.t05-thin90.a2m.gz
# 1oi6A.t05-thin90.a2m with 344 sequences, total weight= 73.2514 avg weight= 0.21294 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3007 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oi6A/info/1oi6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oi6A/nostruct-align/1oi6A.t05-thin90.a2m.gz, have 112620 columns in 466 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oq1A/nostruct-align/1oq1A.t05-thin90.a2m.gz
# 1oq1A.t05-thin90.a2m with 3 sequences, total weight= 2.42809 avg weight= 0.809364 8 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oq1A/info/1oq1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oq1A/nostruct-align/1oq1A.t05-thin90.a2m.gz, have 112843 columns in 467 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qstA/nostruct-align/1qstA.t05-thin90.a2m.gz
# 1qstA.t05-thin90.a2m with 4050 sequences, total weight= 4050 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.82359 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qstA/info/1qstA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qstA/nostruct-align/1qstA.t05-thin90.a2m.gz, have 113003 columns in 468 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nxmA/nostruct-align/1nxmA.t05-thin90.a2m.gz
# 1nxmA.t05-thin90.a2m with 341 sequences, total weight= 74.4614 avg weight= 0.218362 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30067 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nxmA/info/1nxmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nxmA/nostruct-align/1nxmA.t05-thin90.a2m.gz, have 113197 columns in 469 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s9rA/nostruct-align/1s9rA.t05-thin90.a2m.gz
# 1s9rA.t05-thin90.a2m with 330 sequences, total weight= 330 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20458 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s9rA/info/1s9rA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s9rA/nostruct-align/1s9rA.t05-thin90.a2m.gz, have 113606 columns in 470 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k5nB/nostruct-align/1k5nB.t05-thin90.a2m.gz
# 1k5nB.t05-thin90.a2m with 1472 sequences, total weight= 1472 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27631 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k5nB/info/1k5nB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k5nB/nostruct-align/1k5nB.t05-thin90.a2m.gz, have 113706 columns in 471 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eaqA/nostruct-align/1eaqA.t05-thin90.a2m.gz
# 1eaqA.t05-thin90.a2m with 40 sequences, total weight= 8.02733 avg weight= 0.200683 19 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eaqA/info/1eaqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eaqA/nostruct-align/1eaqA.t05-thin90.a2m.gz, have 113830 columns in 472 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1ls1A/nostruct-align/1ls1A.t05-thin90.a2m.gz
# 1ls1A.t05-thin90.a2m with 1344 sequences, total weight= 1344 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10527 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1ls1A/info/1ls1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1ls1A/nostruct-align/1ls1A.t05-thin90.a2m.gz, have 114119 columns in 473 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hp1A/nostruct-align/1hp1A.t05-thin90.a2m.gz
# 1hp1A.t05-thin90.a2m with 1079 sequences, total weight= 1079 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.958488 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hp1A/info/1hp1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hp1A/nostruct-align/1hp1A.t05-thin90.a2m.gz, have 114635 columns in 474 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3s/3seb/nostruct-align/3seb.t05-thin90.a2m.gz
# 3seb.t05-thin90.a2m with 103 sequences, total weight= 54.8188 avg weight= 0.532221 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3s/3seb/info/3seb.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/3s/3seb/nostruct-align/3seb.t05-thin90.a2m.gz, have 114873 columns in 475 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p5vB/nostruct-align/1p5vB.t05-thin90.a2m.gz
# 1p5vB.t05-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.614906 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p5vB/info/1p5vB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p5vB/nostruct-align/1p5vB.t05-thin90.a2m.gz, have 115009 columns in 476 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nq7A/nostruct-align/1nq7A.t05-thin90.a2m.gz
# 1nq7A.t05-thin90.a2m with 1086 sequences, total weight= 1086 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.940005 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nq7A/info/1nq7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nq7A/nostruct-align/1nq7A.t05-thin90.a2m.gz, have 115253 columns in 477 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1is3A/nostruct-align/1is3A.t05-thin90.a2m.gz
# 1is3A.t05-thin90.a2m with 307 sequences, total weight= 302.776 avg weight= 0.986243 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1is3A/info/1is3A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1is3A/nostruct-align/1is3A.t05-thin90.a2m.gz, have 115387 columns in 478 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nkr/nostruct-align/1nkr.t05-thin90.a2m.gz
# 1nkr.t05-thin90.a2m with 4111 sequences, total weight= 4111 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.959408 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nkr/info/1nkr.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nkr/nostruct-align/1nkr.t05-thin90.a2m.gz, have 115582 columns in 479 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vh4A/nostruct-align/1vh4A.t05-thin90.a2m.gz
# 1vh4A.t05-thin90.a2m with 333 sequences, total weight= 333 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26528 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vh4A/info/1vh4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vh4A/nostruct-align/1vh4A.t05-thin90.a2m.gz, have 115992 columns in 480 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o97C/nostruct-align/1o97C.t05-thin90.a2m.gz
# 1o97C.t05-thin90.a2m with 324 sequences, total weight= 90.8461 avg weight= 0.280389 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30206 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o97C/info/1o97C.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o97C/nostruct-align/1o97C.t05-thin90.a2m.gz, have 116243 columns in 481 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qreA/nostruct-align/1qreA.t05-thin90.a2m.gz
# 1qreA.t05-thin90.a2m with 1997 sequences, total weight= 1997 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10719 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qreA/info/1qreA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qreA/nostruct-align/1qreA.t05-thin90.a2m.gz, have 116453 columns in 482 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ow4A/nostruct-align/1ow4A.t05-thin90.a2m.gz
# 1ow4A.t05-thin90.a2m with 3 sequences, total weight= 3 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.973865 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ow4A/info/1ow4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ow4A/nostruct-align/1ow4A.t05-thin90.a2m.gz, have 116573 columns in 483 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gqiA/nostruct-align/1gqiA.t05-thin90.a2m.gz
# 1gqiA.t05-thin90.a2m with 27 sequences, total weight= 6.84386 avg weight= 0.253476 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gqiA/info/1gqiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gqiA/nostruct-align/1gqiA.t05-thin90.a2m.gz, have 117281 columns in 484 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mw9X/nostruct-align/1mw9X.t05-thin90.a2m.gz
# 1mw9X.t05-thin90.a2m with 541 sequences, total weight= 68.9948 avg weight= 0.127532 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3029 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mw9X/info/1mw9X.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mw9X/nostruct-align/1mw9X.t05-thin90.a2m.gz, have 117837 columns in 485 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rwzA/nostruct-align/1rwzA.t05-thin90.a2m.gz
# 1rwzA.t05-thin90.a2m with 189 sequences, total weight= 189 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17705 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rwzA/info/1rwzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rwzA/nostruct-align/1rwzA.t05-thin90.a2m.gz, have 118081 columns in 486 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gmiA/nostruct-align/1gmiA.t05-thin90.a2m.gz
# 1gmiA.t05-thin90.a2m with 2118 sequences, total weight= 2118 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00564 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gmiA/info/1gmiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gmiA/nostruct-align/1gmiA.t05-thin90.a2m.gz, have 118216 columns in 487 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n57A/nostruct-align/1n57A.t05-thin90.a2m.gz
# 1n57A.t05-thin90.a2m with 853 sequences, total weight= 853 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1954 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n57A/info/1n57A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n57A/nostruct-align/1n57A.t05-thin90.a2m.gz, have 118495 columns in 488 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h12A/nostruct-align/1h12A.t05-thin90.a2m.gz
# 1h12A.t05-thin90.a2m with 73 sequences, total weight= 73 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13078 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h12A/info/1h12A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h12A/nostruct-align/1h12A.t05-thin90.a2m.gz, have 118899 columns in 489 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kqfC/nostruct-align/1kqfC.t05-thin90.a2m.gz
# 1kqfC.t05-thin90.a2m with 391 sequences, total weight= 391 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06452 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kqfC/info/1kqfC.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kqfC/nostruct-align/1kqfC.t05-thin90.a2m.gz, have 119115 columns in 490 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nykA/nostruct-align/1nykA.t05-thin90.a2m.gz
# 1nykA.t05-thin90.a2m with 1223 sequences, total weight= 1223 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18349 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nykA/info/1nykA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nykA/nostruct-align/1nykA.t05-thin90.a2m.gz, have 119271 columns in 491 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t4bA/nostruct-align/1t4bA.t05-thin90.a2m.gz
# 1t4bA.t05-thin90.a2m with 1850 sequences, total weight= 1023 avg weight= 0.552974 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31285 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t4bA/info/1t4bA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t4bA/nostruct-align/1t4bA.t05-thin90.a2m.gz, have 119638 columns in 492 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mj5A/nostruct-align/1mj5A.t05-thin90.a2m.gz
# 1mj5A.t05-thin90.a2m with 6941 sequences, total weight= 6941 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.653622 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mj5A/info/1mj5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mj5A/nostruct-align/1mj5A.t05-thin90.a2m.gz, have 119935 columns in 493 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fsgA/nostruct-align/1fsgA.t05-thin90.a2m.gz
# 1fsgA.t05-thin90.a2m with 2024 sequences, total weight= 2024 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.970398 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fsgA/info/1fsgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fsgA/nostruct-align/1fsgA.t05-thin90.a2m.gz, have 120168 columns in 494 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uuqA/nostruct-align/1uuqA.t05-thin90.a2m.gz
# 1uuqA.t05-thin90.a2m with 2316 sequences, total weight= 2316 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.830243 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uuqA/info/1uuqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uuqA/nostruct-align/1uuqA.t05-thin90.a2m.gz, have 120578 columns in 495 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kshB/nostruct-align/1kshB.t05-thin90.a2m.gz
# 1kshB.t05-thin90.a2m with 44 sequences, total weight= 10.7372 avg weight= 0.244027 25 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kshB/info/1kshB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kshB/nostruct-align/1kshB.t05-thin90.a2m.gz, have 120720 columns in 496 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1od6A/nostruct-align/1od6A.t05-thin90.a2m.gz
# 1od6A.t05-thin90.a2m with 1220 sequences, total weight= 1220 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04643 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1od6A/info/1od6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1od6A/nostruct-align/1od6A.t05-thin90.a2m.gz, have 120875 columns in 497 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hxiA/nostruct-align/1hxiA.t05-thin90.a2m.gz
# 1hxiA.t05-thin90.a2m with 4431 sequences, total weight= 4431 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.960919 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hxiA/info/1hxiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hxiA/nostruct-align/1hxiA.t05-thin90.a2m.gz, have 120987 columns in 498 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a4iA/nostruct-align/1a4iA.t05-thin90.a2m.gz
# 1a4iA.t05-thin90.a2m with 608 sequences, total weight= 84.172 avg weight= 0.138441 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30204 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a4iA/info/1a4iA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a4iA/nostruct-align/1a4iA.t05-thin90.a2m.gz, have 121272 columns in 499 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hq1A/nostruct-align/1hq1A.t05-thin90.a2m.gz
# 1hq1A.t05-thin90.a2m with 243 sequences, total weight= 12.7849 avg weight= 0.0526126 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hq1A/info/1hq1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hq1A/nostruct-align/1hq1A.t05-thin90.a2m.gz, have 121348 columns in 500 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j31A/nostruct-align/1j31A.t05-thin90.a2m.gz
# 1j31A.t05-thin90.a2m with 1196 sequences, total weight= 1196 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1101 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j31A/info/1j31A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j31A/nostruct-align/1j31A.t05-thin90.a2m.gz, have 121610 columns in 501 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c5eA/nostruct-align/1c5eA.t05-thin90.a2m.gz
# 1c5eA.t05-thin90.a2m with 6 sequences, total weight= 3.79778 avg weight= 0.632963 13 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c5eA/info/1c5eA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1c5eA/nostruct-align/1c5eA.t05-thin90.a2m.gz, have 121705 columns in 502 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r6dA/nostruct-align/1r6dA.t05-thin90.a2m.gz
# 1r6dA.t05-thin90.a2m with 9775 sequences, total weight= 9775 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.913955 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r6dA/info/1r6dA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r6dA/nostruct-align/1r6dA.t05-thin90.a2m.gz, have 122027 columns in 503 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p3dA/nostruct-align/1p3dA.t05-thin90.a2m.gz
# 1p3dA.t05-thin90.a2m with 1528 sequences, total weight= 1528 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09779 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p3dA/info/1p3dA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p3dA/nostruct-align/1p3dA.t05-thin90.a2m.gz, have 122490 columns in 504 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d0qA/nostruct-align/1d0qA.t05-thin90.a2m.gz
# 1d0qA.t05-thin90.a2m with 255 sequences, total weight= 38.6681 avg weight= 0.15164 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d0qA/info/1d0qA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d0qA/nostruct-align/1d0qA.t05-thin90.a2m.gz, have 122592 columns in 505 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2s/2sak/nostruct-align/2sak.t05-thin90.a2m.gz
# 2sak.t05-thin90.a2m with 6 sequences, total weight= 6 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29353 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2s/2sak/info/2sak.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2s/2sak/nostruct-align/2sak.t05-thin90.a2m.gz, have 122713 columns in 506 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1msk/nostruct-align/1msk.t05-thin90.a2m.gz
# 1msk.t05-thin90.a2m with 148 sequences, total weight= 29.7728 avg weight= 0.201168 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1msk/info/1msk.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1msk/nostruct-align/1msk.t05-thin90.a2m.gz, have 123040 columns in 507 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1npyA/nostruct-align/1npyA.t05-thin90.a2m.gz
# 1npyA.t05-thin90.a2m with 602 sequences, total weight= 602 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23765 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1npyA/info/1npyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1npyA/nostruct-align/1npyA.t05-thin90.a2m.gz, have 123309 columns in 508 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dkiA/nostruct-align/1dkiA.t05-thin90.a2m.gz
# 1dkiA.t05-thin90.a2m with 13 sequences, total weight= 13 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12618 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dkiA/info/1dkiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dkiA/nostruct-align/1dkiA.t05-thin90.a2m.gz, have 123612 columns in 509 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fs7A/nostruct-align/1fs7A.t05-thin90.a2m.gz
# 1fs7A.t05-thin90.a2m with 602 sequences, total weight= 602 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.861098 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fs7A/info/1fs7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fs7A/nostruct-align/1fs7A.t05-thin90.a2m.gz, have 124083 columns in 510 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eazA/nostruct-align/1eazA.t05-thin90.a2m.gz
# 1eazA.t05-thin90.a2m with 1725 sequences, total weight= 1725 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.986422 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eazA/info/1eazA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eazA/nostruct-align/1eazA.t05-thin90.a2m.gz, have 124186 columns in 511 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1ds1A/nostruct-align/1ds1A.t05-thin90.a2m.gz
# 1ds1A.t05-thin90.a2m with 476 sequences, total weight= 476 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.959579 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1ds1A/info/1ds1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1ds1A/nostruct-align/1ds1A.t05-thin90.a2m.gz, have 124509 columns in 512 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g8qA/nostruct-align/1g8qA.t05-thin90.a2m.gz
# 1g8qA.t05-thin90.a2m with 43 sequences, total weight= 17.5511 avg weight= 0.408164 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g8qA/info/1g8qA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g8qA/nostruct-align/1g8qA.t05-thin90.a2m.gz, have 124599 columns in 513 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c7kA/nostruct-align/1c7kA.t05-thin90.a2m.gz
# 1c7kA.t05-thin90.a2m with 146 sequences, total weight= 15.0703 avg weight= 0.103221 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c7kA/info/1c7kA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1c7kA/nostruct-align/1c7kA.t05-thin90.a2m.gz, have 124731 columns in 514 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mwpA/nostruct-align/1mwpA.t05-thin90.a2m.gz
# 1mwpA.t05-thin90.a2m with 31 sequences, total weight= 6.78142 avg weight= 0.218755 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mwpA/info/1mwpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mwpA/nostruct-align/1mwpA.t05-thin90.a2m.gz, have 124827 columns in 515 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pjxA/nostruct-align/1pjxA.t05-thin90.a2m.gz
# 1pjxA.t05-thin90.a2m with 5280 sequences, total weight= 5280 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.708071 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pjxA/info/1pjxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pjxA/nostruct-align/1pjxA.t05-thin90.a2m.gz, have 125141 columns in 516 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kicA/nostruct-align/1kicA.t05-thin90.a2m.gz
# 1kicA.t05-thin90.a2m with 273 sequences, total weight= 273 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27555 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kicA/info/1kicA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kicA/nostruct-align/1kicA.t05-thin90.a2m.gz, have 125458 columns in 517 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1npsA/nostruct-align/1npsA.t05-thin90.a2m.gz
# 1npsA.t05-thin90.a2m with 9 sequences, total weight= 7.00568 avg weight= 0.778409 20 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1npsA/info/1npsA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1npsA/nostruct-align/1npsA.t05-thin90.a2m.gz, have 125546 columns in 518 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p1xA/nostruct-align/1p1xA.t05-thin90.a2m.gz
# 1p1xA.t05-thin90.a2m with 214 sequences, total weight= 54.5255 avg weight= 0.254792 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30039 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p1xA/info/1p1xA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p1xA/nostruct-align/1p1xA.t05-thin90.a2m.gz, have 125796 columns in 519 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jndA/nostruct-align/1jndA.t05-thin90.a2m.gz
# 1jndA.t05-thin90.a2m with 864 sequences, total weight= 864 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0971 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jndA/info/1jndA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jndA/nostruct-align/1jndA.t05-thin90.a2m.gz, have 126196 columns in 520 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kw4A/nostruct-align/1kw4A.t05-thin90.a2m.gz
# 1kw4A.t05-thin90.a2m with 96 sequences, total weight= 16.7234 avg weight= 0.174202 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kw4A/info/1kw4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kw4A/nostruct-align/1kw4A.t05-thin90.a2m.gz, have 126266 columns in 521 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mj4A/nostruct-align/1mj4A.t05-thin90.a2m.gz
# 1mj4A.t05-thin90.a2m with 474 sequences, total weight= 48.4303 avg weight= 0.102174 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30159 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mj4A/info/1mj4A.stride-mixed.near-backbone-11
WARNING: skipping a, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mj4A/nostruct-align/1mj4A.t05-thin90.a2m.gz, have 126345 columns in 522 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m4jA/nostruct-align/1m4jA.t05-thin90.a2m.gz
# 1m4jA.t05-thin90.a2m with 255 sequences, total weight= 255 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26891 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m4jA/info/1m4jA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m4jA/nostruct-align/1m4jA.t05-thin90.a2m.gz, have 126478 columns in 523 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rwhA/nostruct-align/1rwhA.t05-thin90.a2m.gz
# 1rwhA.t05-thin90.a2m with 74 sequences, total weight= 74 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12054 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rwhA/info/1rwhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rwhA/nostruct-align/1rwhA.t05-thin90.a2m.gz, have 127232 columns in 524 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j7xA/nostruct-align/1j7xA.t05-thin90.a2m.gz
# 1j7xA.t05-thin90.a2m with 517 sequences, total weight= 517 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2018 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j7xA/info/1j7xA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j7xA/nostruct-align/1j7xA.t05-thin90.a2m.gz, have 127534 columns in 525 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mnnA/nostruct-align/1mnnA.t05-thin90.a2m.gz
# 1mnnA.t05-thin90.a2m with 56 sequences, total weight= 47.3931 avg weight= 0.846305 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mnnA/info/1mnnA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mnnA/nostruct-align/1mnnA.t05-thin90.a2m.gz, have 127824 columns in 526 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mdoA/nostruct-align/1mdoA.t05-thin90.a2m.gz
# 1mdoA.t05-thin90.a2m with 8618 sequences, total weight= 8618 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.831506 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mdoA/info/1mdoA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mdoA/nostruct-align/1mdoA.t05-thin90.a2m.gz, have 128189 columns in 527 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r9lA/nostruct-align/1r9lA.t05-thin90.a2m.gz
# 1r9lA.t05-thin90.a2m with 1013 sequences, total weight= 1013 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.93199 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r9lA/info/1r9lA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r9lA/nostruct-align/1r9lA.t05-thin90.a2m.gz, have 128498 columns in 528 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f1mA/nostruct-align/1f1mA.t05-thin90.a2m.gz
# 1f1mA.t05-thin90.a2m with 130 sequences, total weight= 5.90468 avg weight= 0.0454206 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f1mA/info/1f1mA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f1mA/nostruct-align/1f1mA.t05-thin90.a2m.gz, have 128660 columns in 529 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vkkA/nostruct-align/1vkkA.t05-thin90.a2m.gz
# 1vkkA.t05-thin90.a2m with 254 sequences, total weight= 254 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28931 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vkkA/info/1vkkA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vkkA/nostruct-align/1vkkA.t05-thin90.a2m.gz, have 128797 columns in 530 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pp0A/nostruct-align/1pp0A.t05-thin90.a2m.gz
# 1pp0A.t05-thin90.a2m with 11 sequences, total weight= 6.82396 avg weight= 0.62036 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pp0A/info/1pp0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pp0A/nostruct-align/1pp0A.t05-thin90.a2m.gz, have 128988 columns in 531 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r2qA/nostruct-align/1r2qA.t05-thin90.a2m.gz
# 1r2qA.t05-thin90.a2m with 4064 sequences, total weight= 4064 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1275 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r2qA/info/1r2qA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r2qA/nostruct-align/1r2qA.t05-thin90.a2m.gz, have 129158 columns in 532 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h5qA/nostruct-align/1h5qA.t05-thin90.a2m.gz
# 1h5qA.t05-thin90.a2m with 9307 sequences, total weight= 9307 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13484 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h5qA/info/1h5qA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h5qA/nostruct-align/1h5qA.t05-thin90.a2m.gz, have 129418 columns in 533 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kgsA/nostruct-align/1kgsA.t05-thin90.a2m.gz
# 1kgsA.t05-thin90.a2m with 8658 sequences, total weight= 8658 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1377 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kgsA/info/1kgsA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kgsA/nostruct-align/1kgsA.t05-thin90.a2m.gz, have 129637 columns in 534 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rwiA/nostruct-align/1rwiA.t05-thin90.a2m.gz
# 1rwiA.t05-thin90.a2m with 8141 sequences, total weight= 8141 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.748278 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rwiA/info/1rwiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rwiA/nostruct-align/1rwiA.t05-thin90.a2m.gz, have 129893 columns in 535 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tyv/nostruct-align/1tyv.t05-thin90.a2m.gz
# 1tyv.t05-thin90.a2m with 6 sequences, total weight= 3.92909 avg weight= 0.654849 9 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tyv/info/1tyv.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tyv/nostruct-align/1tyv.t05-thin90.a2m.gz, have 130435 columns in 536 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tqhA/nostruct-align/1tqhA.t05-thin90.a2m.gz
# 1tqhA.t05-thin90.a2m with 9417 sequences, total weight= 9417 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.702254 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tqhA/info/1tqhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tqhA/nostruct-align/1tqhA.t05-thin90.a2m.gz, have 130677 columns in 537 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54H/nostruct-align/1v54H.t05-thin90.a2m.gz
# 1v54H.t05-thin90.a2m with 45 sequences, total weight= 7.85568 avg weight= 0.174571 25 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54H/info/1v54H.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v54H/nostruct-align/1v54H.t05-thin90.a2m.gz, have 130756 columns in 538 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u14A/nostruct-align/1u14A.t05-thin90.a2m.gz
# 1u14A.t05-thin90.a2m with 45 sequences, total weight= 16.6344 avg weight= 0.369653 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u14A/info/1u14A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1u14A/nostruct-align/1u14A.t05-thin90.a2m.gz, have 130925 columns in 539 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1chd/nostruct-align/1chd.t05-thin90.a2m.gz
# 1chd.t05-thin90.a2m with 273 sequences, total weight= 33.3926 avg weight= 0.122317 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3004 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1chd/info/1chd.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1chd/nostruct-align/1chd.t05-thin90.a2m.gz, have 131123 columns in 540 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fdr/nostruct-align/1fdr.t05-thin90.a2m.gz
# 1fdr.t05-thin90.a2m with 1943 sequences, total weight= 1943 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02175 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fdr/info/1fdr.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fdr/nostruct-align/1fdr.t05-thin90.a2m.gz, have 131367 columns in 541 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a3c/nostruct-align/1a3c.t05-thin90.a2m.gz
# 1a3c.t05-thin90.a2m with 1030 sequences, total weight= 1030 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07193 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a3c/info/1a3c.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a3c/nostruct-align/1a3c.t05-thin90.a2m.gz, have 131533 columns in 542 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ox0A/nostruct-align/1ox0A.t05-thin90.a2m.gz
# 1ox0A.t05-thin90.a2m with 3080 sequences, total weight= 1345.2 avg weight= 0.436754 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32237 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ox0A/info/1ox0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ox0A/nostruct-align/1ox0A.t05-thin90.a2m.gz, have 131947 columns in 543 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bx4A/nostruct-align/1bx4A.t05-thin90.a2m.gz
# 1bx4A.t05-thin90.a2m with 1759 sequences, total weight= 1759 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02007 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bx4A/info/1bx4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bx4A/nostruct-align/1bx4A.t05-thin90.a2m.gz, have 132289 columns in 544 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2t/2tpsA/nostruct-align/2tpsA.t05-thin90.a2m.gz
# 2tpsA.t05-thin90.a2m with 2889 sequences, total weight= 2889 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.906272 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2t/2tpsA/info/2tpsA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2t/2tpsA/nostruct-align/2tpsA.t05-thin90.a2m.gz, have 132515 columns in 545 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dbwA/nostruct-align/1dbwA.t05-thin90.a2m.gz
# 1dbwA.t05-thin90.a2m with 9122 sequences, total weight= 9122 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22657 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dbwA/info/1dbwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dbwA/nostruct-align/1dbwA.t05-thin90.a2m.gz, have 132638 columns in 546 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jkxA/nostruct-align/1jkxA.t05-thin90.a2m.gz
# 1jkxA.t05-thin90.a2m with 836 sequences, total weight= 726.361 avg weight= 0.868853 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30334 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jkxA/info/1jkxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jkxA/nostruct-align/1jkxA.t05-thin90.a2m.gz, have 132847 columns in 547 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ia8A/nostruct-align/1ia8A.t05-thin90.a2m.gz
# 1ia8A.t05-thin90.a2m with 13391 sequences, total weight= 13391 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08851 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ia8A/info/1ia8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ia8A/nostruct-align/1ia8A.t05-thin90.a2m.gz, have 133119 columns in 548 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1opd/nostruct-align/1opd.t05-thin90.a2m.gz
# 1opd.t05-thin90.a2m with 268 sequences, total weight= 27.9014 avg weight= 0.10411 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1opd/info/1opd.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1opd/nostruct-align/1opd.t05-thin90.a2m.gz, have 133204 columns in 549 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vl7A/nostruct-align/1vl7A.t05-thin90.a2m.gz
# 1vl7A.t05-thin90.a2m with 398 sequences, total weight= 398 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01814 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vl7A/info/1vl7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vl7A/nostruct-align/1vl7A.t05-thin90.a2m.gz, have 133339 columns in 550 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qkrA/nostruct-align/1qkrA.t05-thin90.a2m.gz
# 1qkrA.t05-thin90.a2m with 47 sequences, total weight= 20.9251 avg weight= 0.445216 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qkrA/info/1qkrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qkrA/nostruct-align/1qkrA.t05-thin90.a2m.gz, have 133520 columns in 551 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ui0A/nostruct-align/1ui0A.t05-thin90.a2m.gz
# 1ui0A.t05-thin90.a2m with 316 sequences, total weight= 316 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25978 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ui0A/info/1ui0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ui0A/nostruct-align/1ui0A.t05-thin90.a2m.gz, have 133712 columns in 552 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m45A/nostruct-align/1m45A.t05-thin90.a2m.gz
# 1m45A.t05-thin90.a2m with 2016 sequences, total weight= 2016 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04143 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m45A/info/1m45A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m45A/nostruct-align/1m45A.t05-thin90.a2m.gz, have 133854 columns in 553 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mqoA/nostruct-align/1mqoA.t05-thin90.a2m.gz
# 1mqoA.t05-thin90.a2m with 3238 sequences, total weight= 3238 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.833761 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mqoA/info/1mqoA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mqoA/nostruct-align/1mqoA.t05-thin90.a2m.gz, have 134075 columns in 554 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k5nA/nostruct-align/1k5nA.t05-thin90.a2m.gz
# 1k5nA.t05-thin90.a2m with 2258 sequences, total weight= 2258 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27903 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k5nA/info/1k5nA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k5nA/nostruct-align/1k5nA.t05-thin90.a2m.gz, have 134351 columns in 555 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nxuA/nostruct-align/1nxuA.t05-thin90.a2m.gz
# 1nxuA.t05-thin90.a2m with 140 sequences, total weight= 38.5373 avg weight= 0.275266 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nxuA/info/1nxuA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nxuA/nostruct-align/1nxuA.t05-thin90.a2m.gz, have 134683 columns in 556 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ew0A/nostruct-align/1ew0A.t05-thin90.a2m.gz
# 1ew0A.t05-thin90.a2m with 6796 sequences, total weight= 6796 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.858277 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ew0A/info/1ew0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ew0A/nostruct-align/1ew0A.t05-thin90.a2m.gz, have 134813 columns in 557 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lf7A/nostruct-align/1lf7A.t05-thin90.a2m.gz
# 1lf7A.t05-thin90.a2m with 480 sequences, total weight= 480 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.945098 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lf7A/info/1lf7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lf7A/nostruct-align/1lf7A.t05-thin90.a2m.gz, have 134977 columns in 558 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e30A/nostruct-align/1e30A.t05-thin90.a2m.gz
# 1e30A.t05-thin90.a2m with 364 sequences, total weight= 364 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.971481 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e30A/info/1e30A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e30A/nostruct-align/1e30A.t05-thin90.a2m.gz, have 135130 columns in 559 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rttA/nostruct-align/1rttA.t05-thin90.a2m.gz
# 1rttA.t05-thin90.a2m with 1220 sequences, total weight= 1220 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.976381 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rttA/info/1rttA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rttA/nostruct-align/1rttA.t05-thin90.a2m.gz, have 135304 columns in 560 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cnv/nostruct-align/1cnv.t05-thin90.a2m.gz
# 1cnv.t05-thin90.a2m with 961 sequences, total weight= 961 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08404 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cnv/info/1cnv.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cnv/nostruct-align/1cnv.t05-thin90.a2m.gz, have 135587 columns in 561 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tovA/nostruct-align/1tovA.t05-thin90.a2m.gz
# 1tovA.t05-thin90.a2m with 241 sequences, total weight= 73.165 avg weight= 0.303589 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30284 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tovA/info/1tovA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tovA/nostruct-align/1tovA.t05-thin90.a2m.gz, have 135684 columns in 562 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dqeA/nostruct-align/1dqeA.t05-thin90.a2m.gz
# 1dqeA.t05-thin90.a2m with 145 sequences, total weight= 145 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15503 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dqeA/info/1dqeA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dqeA/nostruct-align/1dqeA.t05-thin90.a2m.gz, have 135821 columns in 563 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s7iA/nostruct-align/1s7iA.t05-thin90.a2m.gz
# 1s7iA.t05-thin90.a2m with 116 sequences, total weight= 50.7252 avg weight= 0.437286 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s7iA/info/1s7iA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s7iA/nostruct-align/1s7iA.t05-thin90.a2m.gz, have 135945 columns in 564 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dypA/nostruct-align/1dypA.t05-thin90.a2m.gz
# 1dypA.t05-thin90.a2m with 497 sequences, total weight= 497 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07769 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dypA/info/1dypA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dypA/nostruct-align/1dypA.t05-thin90.a2m.gz, have 136216 columns in 565 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fcyA/nostruct-align/1fcyA.t05-thin90.a2m.gz
# 1fcyA.t05-thin90.a2m with 1087 sequences, total weight= 1087 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.958982 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fcyA/info/1fcyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fcyA/nostruct-align/1fcyA.t05-thin90.a2m.gz, have 136452 columns in 566 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t5bA/nostruct-align/1t5bA.t05-thin90.a2m.gz
# 1t5bA.t05-thin90.a2m with 1189 sequences, total weight= 1189 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.977522 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t5bA/info/1t5bA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t5bA/nostruct-align/1t5bA.t05-thin90.a2m.gz, have 136651 columns in 567 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ej0A/nostruct-align/1ej0A.t05-thin90.a2m.gz
# 1ej0A.t05-thin90.a2m with 1399 sequences, total weight= 1399 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04577 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ej0A/info/1ej0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ej0A/nostruct-align/1ej0A.t05-thin90.a2m.gz, have 136831 columns in 568 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ifrA/nostruct-align/1ifrA.t05-thin90.a2m.gz
# 1ifrA.t05-thin90.a2m with 99 sequences, total weight= 30.2177 avg weight= 0.305229 45 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ifrA/info/1ifrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ifrA/nostruct-align/1ifrA.t05-thin90.a2m.gz, have 136944 columns in 569 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u55A/nostruct-align/1u55A.t05-thin90.a2m.gz
# 1u55A.t05-thin90.a2m with 84 sequences, total weight= 84 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26181 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u55A/info/1u55A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1u55A/nostruct-align/1u55A.t05-thin90.a2m.gz, have 137132 columns in 570 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gheA/nostruct-align/1gheA.t05-thin90.a2m.gz
# 1gheA.t05-thin90.a2m with 5842 sequences, total weight= 5842 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.730678 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gheA/info/1gheA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gheA/nostruct-align/1gheA.t05-thin90.a2m.gz, have 137302 columns in 571 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kq6A/nostruct-align/1kq6A.t05-thin90.a2m.gz
# 1kq6A.t05-thin90.a2m with 447 sequences, total weight= 447 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0643 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kq6A/info/1kq6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kq6A/nostruct-align/1kq6A.t05-thin90.a2m.gz, have 137442 columns in 572 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r6xA/nostruct-align/1r6xA.t05-thin90.a2m.gz
# 1r6xA.t05-thin90.a2m with 144 sequences, total weight= 31.6293 avg weight= 0.219648 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r6xA/info/1r6xA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r6xA/nostruct-align/1r6xA.t05-thin90.a2m.gz, have 137828 columns in 573 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l6rA/nostruct-align/1l6rA.t05-thin90.a2m.gz
# 1l6rA.t05-thin90.a2m with 4448 sequences, total weight= 4448 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.883331 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l6rA/info/1l6rA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l6rA/nostruct-align/1l6rA.t05-thin90.a2m.gz, have 138053 columns in 574 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qtnA/nostruct-align/1qtnA.t05-thin90.a2m.gz
# 1qtnA.t05-thin90.a2m with 208 sequences, total weight= 53.9158 avg weight= 0.25921 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30079 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qtnA/info/1qtnA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qtnA/nostruct-align/1qtnA.t05-thin90.a2m.gz, have 138205 columns in 575 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3s/3sdhA/nostruct-align/3sdhA.t05-thin90.a2m.gz
# 3sdhA.t05-thin90.a2m with 972 sequences, total weight= 972 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21142 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3s/3sdhA/info/3sdhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/3s/3sdhA/nostruct-align/3sdhA.t05-thin90.a2m.gz, have 138350 columns in 576 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e1hA/nostruct-align/1e1hA.t05-thin90.a2m.gz
# 1e1hA.t05-thin90.a2m with 26 sequences, total weight= 9.168 avg weight= 0.352615 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e1hA/info/1e1hA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e1hA/nostruct-align/1e1hA.t05-thin90.a2m.gz, have 138585 columns in 577 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nepA/nostruct-align/1nepA.t05-thin90.a2m.gz
# 1nepA.t05-thin90.a2m with 101 sequences, total weight= 101 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20913 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nepA/info/1nepA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nepA/nostruct-align/1nepA.t05-thin90.a2m.gz, have 138715 columns in 578 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s2wA/nostruct-align/1s2wA.t05-thin90.a2m.gz
# 1s2wA.t05-thin90.a2m with 497 sequences, total weight= 151.788 avg weight= 0.305408 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30679 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s2wA/info/1s2wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s2wA/nostruct-align/1s2wA.t05-thin90.a2m.gz, have 138973 columns in 579 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u60A/nostruct-align/1u60A.t05-thin90.a2m.gz
# 1u60A.t05-thin90.a2m with 188 sequences, total weight= 68.02 avg weight= 0.361809 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3005 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u60A/info/1u60A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1u60A/nostruct-align/1u60A.t05-thin90.a2m.gz, have 139282 columns in 580 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jg1A/nostruct-align/1jg1A.t05-thin90.a2m.gz
# 1jg1A.t05-thin90.a2m with 11371 sequences, total weight= 11371 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.632303 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jg1A/info/1jg1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jg1A/nostruct-align/1jg1A.t05-thin90.a2m.gz, have 139497 columns in 581 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f3uB/nostruct-align/1f3uB.t05-thin90.a2m.gz
# 1f3uB.t05-thin90.a2m with 18 sequences, total weight= 11.4942 avg weight= 0.638565 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f3uB/info/1f3uB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f3uB/nostruct-align/1f3uB.t05-thin90.a2m.gz, have 139636 columns in 582 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mxiA/nostruct-align/1mxiA.t05-thin90.a2m.gz
# 1mxiA.t05-thin90.a2m with 949 sequences, total weight= 949 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24211 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mxiA/info/1mxiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mxiA/nostruct-align/1mxiA.t05-thin90.a2m.gz, have 139792 columns in 583 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tbfA/nostruct-align/1tbfA.t05-thin90.a2m.gz
# 1tbfA.t05-thin90.a2m with 287 sequences, total weight= 129.857 avg weight= 0.452463 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30235 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tbfA/info/1tbfA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tbfA/nostruct-align/1tbfA.t05-thin90.a2m.gz, have 140118 columns in 584 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rh6A/nostruct-align/1rh6A.t05-thin90.a2m.gz
# 1rh6A.t05-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.952929 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rh6A/info/1rh6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rh6A/nostruct-align/1rh6A.t05-thin90.a2m.gz, have 140173 columns in 585 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oboA/nostruct-align/1oboA.t05-thin90.a2m.gz
# 1oboA.t05-thin90.a2m with 1004 sequences, total weight= 1004 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0383 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oboA/info/1oboA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oboA/nostruct-align/1oboA.t05-thin90.a2m.gz, have 140342 columns in 586 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jfxA/nostruct-align/1jfxA.t05-thin90.a2m.gz
# 1jfxA.t05-thin90.a2m with 195 sequences, total weight= 195 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18362 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jfxA/info/1jfxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jfxA/nostruct-align/1jfxA.t05-thin90.a2m.gz, have 140559 columns in 587 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f86A/nostruct-align/1f86A.t05-thin90.a2m.gz
# 1f86A.t05-thin90.a2m with 118 sequences, total weight= 16.0542 avg weight= 0.136052 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f86A/info/1f86A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f86A/nostruct-align/1f86A.t05-thin90.a2m.gz, have 140674 columns in 588 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m4iA/nostruct-align/1m4iA.t05-thin90.a2m.gz
# 1m4iA.t05-thin90.a2m with 5465 sequences, total weight= 5465 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.756147 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m4iA/info/1m4iA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m4iA/nostruct-align/1m4iA.t05-thin90.a2m.gz, have 140855 columns in 589 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qwnA/nostruct-align/1qwnA.t05-thin90.a2m.gz
# 1qwnA.t05-thin90.a2m with 235 sequences, total weight= 235 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14775 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qwnA/info/1qwnA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qwnA/nostruct-align/1qwnA.t05-thin90.a2m.gz, have 141869 columns in 590 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iuqA/nostruct-align/1iuqA.t05-thin90.a2m.gz
# 1iuqA.t05-thin90.a2m with 1014 sequences, total weight= 1014 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.915602 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iuqA/info/1iuqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iuqA/nostruct-align/1iuqA.t05-thin90.a2m.gz, have 142226 columns in 591 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v2zA/nostruct-align/1v2zA.t05-thin90.a2m.gz
# 1v2zA.t05-thin90.a2m with 14 sequences, total weight= 3.64899 avg weight= 0.260642 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v2zA/info/1v2zA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v2zA/nostruct-align/1v2zA.t05-thin90.a2m.gz, have 142332 columns in 592 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nqzA/nostruct-align/1nqzA.t05-thin90.a2m.gz
# 1nqzA.t05-thin90.a2m with 2536 sequences, total weight= 2536 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.859328 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nqzA/info/1nqzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nqzA/nostruct-align/1nqzA.t05-thin90.a2m.gz, have 142503 columns in 593 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kafA/nostruct-align/1kafA.t05-thin90.a2m.gz
# 1kafA.t05-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.964603 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kafA/info/1kafA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kafA/nostruct-align/1kafA.t05-thin90.a2m.gz, have 142611 columns in 594 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2e/2eng/nostruct-align/2eng.t05-thin90.a2m.gz
# 2eng.t05-thin90.a2m with 35 sequences, total weight= 5.85779 avg weight= 0.167365 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2e/2eng/info/2eng.stride-mixed.near-backbone-11
WARNING: skipping f, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/2e/2eng/nostruct-align/2eng.t05-thin90.a2m.gz, have 142816 columns in 595 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ogoX/nostruct-align/1ogoX.t05-thin90.a2m.gz
# 1ogoX.t05-thin90.a2m with 49 sequences, total weight= 48.3975 avg weight= 0.987705 20 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ogoX/info/1ogoX.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ogoX/nostruct-align/1ogoX.t05-thin90.a2m.gz, have 143388 columns in 596 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o9wA/nostruct-align/1o9wA.t05-thin90.a2m.gz
# 1o9wA.t05-thin90.a2m with 2 sequences, total weight= 1.88352 avg weight= 0.94176 6 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o9wA/info/1o9wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o9wA/nostruct-align/1o9wA.t05-thin90.a2m.gz, have 143557 columns in 597 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1ku3A/nostruct-align/1ku3A.t05-thin90.a2m.gz
# 1ku3A.t05-thin90.a2m with 243 sequences, total weight= 10.7588 avg weight= 0.044275 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1ku3A/info/1ku3A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1ku3A/nostruct-align/1ku3A.t05-thin90.a2m.gz, have 143618 columns in 598 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q0rA/nostruct-align/1q0rA.t05-thin90.a2m.gz
# 1q0rA.t05-thin90.a2m with 8053 sequences, total weight= 8053 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.666275 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q0rA/info/1q0rA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q0rA/nostruct-align/1q0rA.t05-thin90.a2m.gz, have 143915 columns in 599 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fr2A/nostruct-align/1fr2A.t05-thin90.a2m.gz
# 1fr2A.t05-thin90.a2m with 24 sequences, total weight= 5.16778 avg weight= 0.215324 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fr2A/info/1fr2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fr2A/nostruct-align/1fr2A.t05-thin90.a2m.gz, have 143998 columns in 600 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m70A/nostruct-align/1m70A.t05-thin90.a2m.gz
# 1m70A.t05-thin90.a2m with 1198 sequences, total weight= 1198 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04099 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m70A/info/1m70A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m70A/nostruct-align/1m70A.t05-thin90.a2m.gz, have 144188 columns in 601 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qg8A/nostruct-align/1qg8A.t05-thin90.a2m.gz
# 1qg8A.t05-thin90.a2m with 4120 sequences, total weight= 4120 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.82602 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qg8A/info/1qg8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qg8A/nostruct-align/1qg8A.t05-thin90.a2m.gz, have 144426 columns in 602 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gveA/nostruct-align/1gveA.t05-thin90.a2m.gz
# 1gveA.t05-thin90.a2m with 1966 sequences, total weight= 1966 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25952 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gveA/info/1gveA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gveA/nostruct-align/1gveA.t05-thin90.a2m.gz, have 144750 columns in 603 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lm5A/nostruct-align/1lm5A.t05-thin90.a2m.gz
# 1lm5A.t05-thin90.a2m with 219 sequences, total weight= 219 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27634 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lm5A/info/1lm5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lm5A/nostruct-align/1lm5A.t05-thin90.a2m.gz, have 144939 columns in 604 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p90A/nostruct-align/1p90A.t05-thin90.a2m.gz
# 1p90A.t05-thin90.a2m with 230 sequences, total weight= 230 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16119 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p90A/info/1p90A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p90A/nostruct-align/1p90A.t05-thin90.a2m.gz, have 145062 columns in 605 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lq9A/nostruct-align/1lq9A.t05-thin90.a2m.gz
# 1lq9A.t05-thin90.a2m with 114 sequences, total weight= 114 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06393 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lq9A/info/1lq9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lq9A/nostruct-align/1lq9A.t05-thin90.a2m.gz, have 145174 columns in 606 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uuyA/nostruct-align/1uuyA.t05-thin90.a2m.gz
# 1uuyA.t05-thin90.a2m with 728 sequences, total weight= 728 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27543 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uuyA/info/1uuyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uuyA/nostruct-align/1uuyA.t05-thin90.a2m.gz, have 145335 columns in 607 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1z/1zin/nostruct-align/1zin.t05-thin90.a2m.gz
# 1zin.t05-thin90.a2m with 2000 sequences, total weight= 2000 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.914141 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1z/1zin/info/1zin.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1z/1zin/nostruct-align/1zin.t05-thin90.a2m.gz, have 145552 columns in 608 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pz7A/nostruct-align/1pz7A.t05-thin90.a2m.gz
# 1pz7A.t05-thin90.a2m with 1244 sequences, total weight= 1244 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.949527 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pz7A/info/1pz7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pz7A/nostruct-align/1pz7A.t05-thin90.a2m.gz, have 145740 columns in 609 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l5oA/nostruct-align/1l5oA.t05-thin90.a2m.gz
# 1l5oA.t05-thin90.a2m with 165 sequences, total weight= 45.8398 avg weight= 0.277817 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l5oA/info/1l5oA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l5oA/nostruct-align/1l5oA.t05-thin90.a2m.gz, have 146086 columns in 610 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d4aA/nostruct-align/1d4aA.t05-thin90.a2m.gz
# 1d4aA.t05-thin90.a2m with 1153 sequences, total weight= 1153 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06489 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d4aA/info/1d4aA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d4aA/nostruct-align/1d4aA.t05-thin90.a2m.gz, have 146359 columns in 611 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s3eA/nostruct-align/1s3eA.t05-thin90.a2m.gz
# 1s3eA.t05-thin90.a2m with 7958 sequences, total weight= 7958 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.742793 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s3eA/info/1s3eA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s3eA/nostruct-align/1s3eA.t05-thin90.a2m.gz, have 146858 columns in 612 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jhfA/nostruct-align/1jhfA.t05-thin90.a2m.gz
# 1jhfA.t05-thin90.a2m with 568 sequences, total weight= 568 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15255 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jhfA/info/1jhfA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jhfA/nostruct-align/1jhfA.t05-thin90.a2m.gz, have 147055 columns in 613 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rgzA/nostruct-align/1rgzA.t05-thin90.a2m.gz
# 1rgzA.t05-thin90.a2m with 848 sequences, total weight= 848 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.997511 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rgzA/info/1rgzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rgzA/nostruct-align/1rgzA.t05-thin90.a2m.gz, have 147418 columns in 614 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mla/nostruct-align/1mla.t05-thin90.a2m.gz
# 1mla.t05-thin90.a2m with 1453 sequences, total weight= 1453 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2368 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mla/info/1mla.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mla/nostruct-align/1mla.t05-thin90.a2m.gz, have 147723 columns in 615 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f9vA/nostruct-align/1f9vA.t05-thin90.a2m.gz
# 1f9vA.t05-thin90.a2m with 1163 sequences, total weight= 89.9811 avg weight= 0.0773698 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3076 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f9vA/info/1f9vA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f9vA/nostruct-align/1f9vA.t05-thin90.a2m.gz, have 148036 columns in 616 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n8kA/nostruct-align/1n8kA.t05-thin90.a2m.gz
# 1n8kA.t05-thin90.a2m with 3626 sequences, total weight= 3626 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17215 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n8kA/info/1n8kA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n8kA/nostruct-align/1n8kA.t05-thin90.a2m.gz, have 148410 columns in 617 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jx4A/nostruct-align/1jx4A.t05-thin90.a2m.gz
# 1jx4A.t05-thin90.a2m with 567 sequences, total weight= 567 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27993 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jx4A/info/1jx4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jx4A/nostruct-align/1jx4A.t05-thin90.a2m.gz, have 148751 columns in 618 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n97A/nostruct-align/1n97A.t05-thin90.a2m.gz
# 1n97A.t05-thin90.a2m with 4529 sequences, total weight= 4529 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00278 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n97A/info/1n97A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n97A/nostruct-align/1n97A.t05-thin90.a2m.gz, have 149136 columns in 619 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k92A/nostruct-align/1k92A.t05-thin90.a2m.gz
# 1k92A.t05-thin90.a2m with 1360 sequences, total weight= 1360 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21533 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k92A/info/1k92A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k92A/nostruct-align/1k92A.t05-thin90.a2m.gz, have 149580 columns in 620 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pkhA/nostruct-align/1pkhA.t05-thin90.a2m.gz
# 1pkhA.t05-thin90.a2m with 574 sequences, total weight= 574 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18509 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pkhA/info/1pkhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pkhA/nostruct-align/1pkhA.t05-thin90.a2m.gz, have 149762 columns in 621 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q3oA/nostruct-align/1q3oA.t05-thin90.a2m.gz
# 1q3oA.t05-thin90.a2m with 1673 sequences, total weight= 1673 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15139 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q3oA/info/1q3oA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q3oA/nostruct-align/1q3oA.t05-thin90.a2m.gz, have 149866 columns in 622 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kqrA/nostruct-align/1kqrA.t05-thin90.a2m.gz
# 1kqrA.t05-thin90.a2m with 62 sequences, total weight= 7.70826 avg weight= 0.124327 25 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kqrA/info/1kqrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kqrA/nostruct-align/1kqrA.t05-thin90.a2m.gz, have 150026 columns in 623 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1euvA/nostruct-align/1euvA.t05-thin90.a2m.gz
# 1euvA.t05-thin90.a2m with 516 sequences, total weight= 516 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.953125 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1euvA/info/1euvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1euvA/nostruct-align/1euvA.t05-thin90.a2m.gz, have 150247 columns in 624 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d3gA/nostruct-align/1d3gA.t05-thin90.a2m.gz
# 1d3gA.t05-thin90.a2m with 2573 sequences, total weight= 2573 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.965092 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d3gA/info/1d3gA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d3gA/nostruct-align/1d3gA.t05-thin90.a2m.gz, have 150607 columns in 625 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uufA/nostruct-align/1uufA.t05-thin90.a2m.gz
# 1uufA.t05-thin90.a2m with 3781 sequences, total weight= 3781 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17666 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uufA/info/1uufA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uufA/nostruct-align/1uufA.t05-thin90.a2m.gz, have 150946 columns in 626 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1it2A/nostruct-align/1it2A.t05-thin90.a2m.gz
# 1it2A.t05-thin90.a2m with 796 sequences, total weight= 796 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29097 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1it2A/info/1it2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1it2A/nostruct-align/1it2A.t05-thin90.a2m.gz, have 151092 columns in 627 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qb7A/nostruct-align/1qb7A.t05-thin90.a2m.gz
# 1qb7A.t05-thin90.a2m with 2206 sequences, total weight= 2206 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.935153 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qb7A/info/1qb7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qb7A/nostruct-align/1qb7A.t05-thin90.a2m.gz, have 151328 columns in 628 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nn5A/nostruct-align/1nn5A.t05-thin90.a2m.gz
# 1nn5A.t05-thin90.a2m with 10608 sequences, total weight= 10608 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.696283 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nn5A/info/1nn5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nn5A/nostruct-align/1nn5A.t05-thin90.a2m.gz, have 151532 columns in 629 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ucrA/nostruct-align/1ucrA.t05-thin90.a2m.gz
# 1ucrA.t05-thin90.a2m with 13 sequences, total weight= 5.95035 avg weight= 0.457719 19 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ucrA/info/1ucrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ucrA/nostruct-align/1ucrA.t05-thin90.a2m.gz, have 151606 columns in 630 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s95A/nostruct-align/1s95A.t05-thin90.a2m.gz
# 1s95A.t05-thin90.a2m with 972 sequences, total weight= 972 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15001 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s95A/info/1s95A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s95A/nostruct-align/1s95A.t05-thin90.a2m.gz, have 151930 columns in 631 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jykA/nostruct-align/1jykA.t05-thin90.a2m.gz
# 1jykA.t05-thin90.a2m with 2547 sequences, total weight= 2547 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0321 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jykA/info/1jykA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jykA/nostruct-align/1jykA.t05-thin90.a2m.gz, have 152159 columns in 632 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qazA/nostruct-align/1qazA.t05-thin90.a2m.gz
# 1qazA.t05-thin90.a2m with 61 sequences, total weight= 61 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.999549 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qazA/info/1qazA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qazA/nostruct-align/1qazA.t05-thin90.a2m.gz, have 152510 columns in 633 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pkoA/nostruct-align/1pkoA.t05-thin90.a2m.gz
# 1pkoA.t05-thin90.a2m with 10840 sequences, total weight= 10840 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1536 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pkoA/info/1pkoA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pkoA/nostruct-align/1pkoA.t05-thin90.a2m.gz, have 152634 columns in 634 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n9eA/nostruct-align/1n9eA.t05-thin90.a2m.gz
# 1n9eA.t05-thin90.a2m with 147 sequences, total weight= 76.8089 avg weight= 0.52251 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n9eA/info/1n9eA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n9eA/nostruct-align/1n9eA.t05-thin90.a2m.gz, have 153369 columns in 635 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l8bA/nostruct-align/1l8bA.t05-thin90.a2m.gz
# 1l8bA.t05-thin90.a2m with 173 sequences, total weight= 101.112 avg weight= 0.584462 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30123 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l8bA/info/1l8bA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l8bA/nostruct-align/1l8bA.t05-thin90.a2m.gz, have 153546 columns in 636 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1go3F/nostruct-align/1go3F.t05-thin90.a2m.gz
# 1go3F.t05-thin90.a2m with 24 sequences, total weight= 18.4934 avg weight= 0.770559 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1go3F/info/1go3F.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1go3F/nostruct-align/1go3F.t05-thin90.a2m.gz, have 153653 columns in 637 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rcqA/nostruct-align/1rcqA.t05-thin90.a2m.gz
# 1rcqA.t05-thin90.a2m with 1158 sequences, total weight= 1158 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0979 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rcqA/info/1rcqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rcqA/nostruct-align/1rcqA.t05-thin90.a2m.gz, have 154010 columns in 638 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vkeA/nostruct-align/1vkeA.t05-thin90.a2m.gz
# 1vkeA.t05-thin90.a2m with 466 sequences, total weight= 466 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06937 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vkeA/info/1vkeA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vkeA/nostruct-align/1vkeA.t05-thin90.a2m.gz, have 154127 columns in 639 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kp6A/nostruct-align/1kp6A.t05-thin90.a2m.gz
# 1kp6A.t05-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.617161 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kp6A/info/1kp6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kp6A/nostruct-align/1kp6A.t05-thin90.a2m.gz, have 154206 columns in 640 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e5kA/nostruct-align/1e5kA.t05-thin90.a2m.gz
# 1e5kA.t05-thin90.a2m with 2587 sequences, total weight= 2587 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0379 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e5kA/info/1e5kA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e5kA/nostruct-align/1e5kA.t05-thin90.a2m.gz, have 154394 columns in 641 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kveA/nostruct-align/1kveA.t05-thin90.a2m.gz
# 1kveA.t05-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.697962 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kveA/info/1kveA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kveA/nostruct-align/1kveA.t05-thin90.a2m.gz, have 154457 columns in 642 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eajA/nostruct-align/1eajA.t05-thin90.a2m.gz
# 1eajA.t05-thin90.a2m with 12016 sequences, total weight= 48.187 avg weight= 0.00401024 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30179 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eajA/info/1eajA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eajA/nostruct-align/1eajA.t05-thin90.a2m.gz, have 154581 columns in 643 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pgs/nostruct-align/1pgs.t05-thin90.a2m.gz
# 1pgs.t05-thin90.a2m with 5 sequences, total weight= 5 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01788 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pgs/info/1pgs.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pgs/nostruct-align/1pgs.t05-thin90.a2m.gz, have 154892 columns in 644 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pe9A/nostruct-align/1pe9A.t05-thin90.a2m.gz
# 1pe9A.t05-thin90.a2m with 219 sequences, total weight= 219 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27222 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pe9A/info/1pe9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pe9A/nostruct-align/1pe9A.t05-thin90.a2m.gz, have 155253 columns in 645 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2a/2ayh/nostruct-align/2ayh.t05-thin90.a2m.gz
# 2ayh.t05-thin90.a2m with 504 sequences, total weight= 504 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14977 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2a/2ayh/info/2ayh.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2a/2ayh/nostruct-align/2ayh.t05-thin90.a2m.gz, have 155467 columns in 646 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qqqA/nostruct-align/1qqqA.t05-thin90.a2m.gz
# 1qqqA.t05-thin90.a2m with 280 sequences, total weight= 44.854 avg weight= 0.160193 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qqqA/info/1qqqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qqqA/nostruct-align/1qqqA.t05-thin90.a2m.gz, have 155731 columns in 647 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ucdA/nostruct-align/1ucdA.t05-thin90.a2m.gz
# 1ucdA.t05-thin90.a2m with 545 sequences, total weight= 229.18 avg weight= 0.420513 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30969 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ucdA/info/1ucdA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ucdA/nostruct-align/1ucdA.t05-thin90.a2m.gz, have 155921 columns in 648 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uxy/nostruct-align/1uxy.t05-thin90.a2m.gz
# 1uxy.t05-thin90.a2m with 1250 sequences, total weight= 1250 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12121 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uxy/info/1uxy.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uxy/nostruct-align/1uxy.t05-thin90.a2m.gz, have 156261 columns in 649 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1avwB/nostruct-align/1avwB.t05-thin90.a2m.gz
# 1avwB.t05-thin90.a2m with 132 sequences, total weight= 48.9784 avg weight= 0.371048 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1avwB/info/1avwB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1avwB/nostruct-align/1avwB.t05-thin90.a2m.gz, have 156432 columns in 650 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k07A/nostruct-align/1k07A.t05-thin90.a2m.gz
# 1k07A.t05-thin90.a2m with 3357 sequences, total weight= 3357 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.827949 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k07A/info/1k07A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k07A/nostruct-align/1k07A.t05-thin90.a2m.gz, have 156694 columns in 651 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q52A/nostruct-align/1q52A.t05-thin90.a2m.gz
# 1q52A.t05-thin90.a2m with 2172 sequences, total weight= 2172 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14773 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q52A/info/1q52A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q52A/nostruct-align/1q52A.t05-thin90.a2m.gz, have 156963 columns in 652 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fxoA/nostruct-align/1fxoA.t05-thin90.a2m.gz
# 1fxoA.t05-thin90.a2m with 2513 sequences, total weight= 2513 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0112 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fxoA/info/1fxoA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fxoA/nostruct-align/1fxoA.t05-thin90.a2m.gz, have 157255 columns in 653 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1od3A/nostruct-align/1od3A.t05-thin90.a2m.gz
# 1od3A.t05-thin90.a2m with 143 sequences, total weight= 100.318 avg weight= 0.701527 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30069 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1od3A/info/1od3A.stride-mixed.near-backbone-11
WARNING: skipping e, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1o/1od3A/nostruct-align/1od3A.t05-thin90.a2m.gz, have 157386 columns in 654 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qwyA/nostruct-align/1qwyA.t05-thin90.a2m.gz
# 1qwyA.t05-thin90.a2m with 964 sequences, total weight= 964 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08707 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qwyA/info/1qwyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qwyA/nostruct-align/1qwyA.t05-thin90.a2m.gz, have 157620 columns in 655 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jigA/nostruct-align/1jigA.t05-thin90.a2m.gz
# 1jigA.t05-thin90.a2m with 363 sequences, total weight= 363 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23121 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jigA/info/1jigA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jigA/nostruct-align/1jigA.t05-thin90.a2m.gz, have 157766 columns in 656 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iibA/nostruct-align/1iibA.t05-thin90.a2m.gz
# 1iibA.t05-thin90.a2m with 107 sequences, total weight= 23.1835 avg weight= 0.216668 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iibA/info/1iibA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iibA/nostruct-align/1iibA.t05-thin90.a2m.gz, have 157869 columns in 657 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dcs/nostruct-align/1dcs.t05-thin90.a2m.gz
# 1dcs.t05-thin90.a2m with 804 sequences, total weight= 804 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29597 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dcs/info/1dcs.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dcs/nostruct-align/1dcs.t05-thin90.a2m.gz, have 158148 columns in 658 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mnaA/nostruct-align/1mnaA.t05-thin90.a2m.gz
# 1mnaA.t05-thin90.a2m with 9151 sequences, total weight= 9151 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.954372 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mnaA/info/1mnaA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mnaA/nostruct-align/1mnaA.t05-thin90.a2m.gz, have 158424 columns in 659 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1suuA/nostruct-align/1suuA.t05-thin90.a2m.gz
# 1suuA.t05-thin90.a2m with 358 sequences, total weight= 119.501 avg weight= 0.333801 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30398 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1suuA/info/1suuA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1suuA/nostruct-align/1suuA.t05-thin90.a2m.gz, have 158717 columns in 660 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sfdA/nostruct-align/1sfdA.t05-thin90.a2m.gz
# 1sfdA.t05-thin90.a2m with 650 sequences, total weight= 650 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04702 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sfdA/info/1sfdA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sfdA/nostruct-align/1sfdA.t05-thin90.a2m.gz, have 158822 columns in 661 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i0vA/nostruct-align/1i0vA.t05-thin90.a2m.gz
# 1i0vA.t05-thin90.a2m with 28 sequences, total weight= 9.17031 avg weight= 0.327511 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i0vA/info/1i0vA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i0vA/nostruct-align/1i0vA.t05-thin90.a2m.gz, have 158926 columns in 662 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3b/3bamA/nostruct-align/3bamA.t05-thin90.a2m.gz
# 3bamA.t05-thin90.a2m with 3 sequences, total weight= 3 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13973 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3b/3bamA/info/3bamA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/3b/3bamA/nostruct-align/3bamA.t05-thin90.a2m.gz, have 159132 columns in 663 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iq4A/nostruct-align/1iq4A.t05-thin90.a2m.gz
# 1iq4A.t05-thin90.a2m with 336 sequences, total weight= 36.8354 avg weight= 0.109629 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iq4A/info/1iq4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iq4A/nostruct-align/1iq4A.t05-thin90.a2m.gz, have 159311 columns in 664 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o9rA/nostruct-align/1o9rA.t05-thin90.a2m.gz
# 1o9rA.t05-thin90.a2m with 373 sequences, total weight= 373 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14559 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o9rA/info/1o9rA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o9rA/nostruct-align/1o9rA.t05-thin90.a2m.gz, have 159473 columns in 665 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gyxA/nostruct-align/1gyxA.t05-thin90.a2m.gz
# 1gyxA.t05-thin90.a2m with 7 sequences, total weight= 4.68637 avg weight= 0.669481 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gyxA/info/1gyxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gyxA/nostruct-align/1gyxA.t05-thin90.a2m.gz, have 159549 columns in 666 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vk1A/nostruct-align/1vk1A.t05-thin90.a2m.gz
# 1vk1A.t05-thin90.a2m with 273 sequences, total weight= 148.443 avg weight= 0.543748 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30158 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vk1A/info/1vk1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vk1A/nostruct-align/1vk1A.t05-thin90.a2m.gz, have 159781 columns in 667 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t1dA/nostruct-align/1t1dA.t05-thin90.a2m.gz
# 1t1dA.t05-thin90.a2m with 368 sequences, total weight= 81.4362 avg weight= 0.221294 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30493 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t1dA/info/1t1dA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t1dA/nostruct-align/1t1dA.t05-thin90.a2m.gz, have 159881 columns in 668 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2t/2trxA/nostruct-align/2trxA.t05-thin90.a2m.gz
# 2trxA.t05-thin90.a2m with 3141 sequences, total weight= 3141 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00834 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2t/2trxA/info/2trxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2t/2trxA/nostruct-align/2trxA.t05-thin90.a2m.gz, have 159989 columns in 669 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s1dA/nostruct-align/1s1dA.t05-thin90.a2m.gz
# 1s1dA.t05-thin90.a2m with 33 sequences, total weight= 10.771 avg weight= 0.326393 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s1dA/info/1s1dA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s1dA/nostruct-align/1s1dA.t05-thin90.a2m.gz, have 160306 columns in 670 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gca/nostruct-align/1gca.t05-thin90.a2m.gz
# 1gca.t05-thin90.a2m with 2039 sequences, total weight= 2039 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.915209 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gca/info/1gca.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gca/nostruct-align/1gca.t05-thin90.a2m.gz, have 160615 columns in 671 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d3vA/nostruct-align/1d3vA.t05-thin90.a2m.gz
# 1d3vA.t05-thin90.a2m with 409 sequences, total weight= 409 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25595 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d3vA/info/1d3vA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d3vA/nostruct-align/1d3vA.t05-thin90.a2m.gz, have 160923 columns in 672 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eyhA/nostruct-align/1eyhA.t05-thin90.a2m.gz
# 1eyhA.t05-thin90.a2m with 113 sequences, total weight= 31.7054 avg weight= 0.280578 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eyhA/info/1eyhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eyhA/nostruct-align/1eyhA.t05-thin90.a2m.gz, have 161067 columns in 673 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1aqzA/nostruct-align/1aqzA.t05-thin90.a2m.gz
# 1aqzA.t05-thin90.a2m with 4 sequences, total weight= 1.93686 avg weight= 0.484215 8 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1aqzA/info/1aqzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1aqzA/nostruct-align/1aqzA.t05-thin90.a2m.gz, have 161209 columns in 674 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vlaA/nostruct-align/1vlaA.t05-thin90.a2m.gz
# 1vlaA.t05-thin90.a2m with 458 sequences, total weight= 458 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11421 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vlaA/info/1vlaA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vlaA/nostruct-align/1vlaA.t05-thin90.a2m.gz, have 161353 columns in 675 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vclA/nostruct-align/1vclA.t05-thin90.a2m.gz
# 1vclA.t05-thin90.a2m with 379 sequences, total weight= 143.308 avg weight= 0.378122 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vclA/info/1vclA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vclA/nostruct-align/1vclA.t05-thin90.a2m.gz, have 161785 columns in 676 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mfmA/nostruct-align/1mfmA.t05-thin90.a2m.gz
# 1mfmA.t05-thin90.a2m with 435 sequences, total weight= 73.711 avg weight= 0.169451 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30147 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mfmA/info/1mfmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mfmA/nostruct-align/1mfmA.t05-thin90.a2m.gz, have 161938 columns in 677 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1whi/nostruct-align/1whi.t05-thin90.a2m.gz
# 1whi.t05-thin90.a2m with 287 sequences, total weight= 18.8671 avg weight= 0.0657389 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1whi/info/1whi.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1whi/nostruct-align/1whi.t05-thin90.a2m.gz, have 162060 columns in 678 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1ks9A/nostruct-align/1ks9A.t05-thin90.a2m.gz
# 1ks9A.t05-thin90.a2m with 5682 sequences, total weight= 5682 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.805502 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1ks9A/info/1ks9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1ks9A/nostruct-align/1ks9A.t05-thin90.a2m.gz, have 162351 columns in 679 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vns/nostruct-align/1vns.t05-thin90.a2m.gz
# 1vns.t05-thin90.a2m with 42 sequences, total weight= 42 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19276 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vns/info/1vns.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vns/nostruct-align/1vns.t05-thin90.a2m.gz, have 162925 columns in 680 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1ayl/nostruct-align/1ayl.t05-thin90.a2m.gz
# 1ayl.t05-thin90.a2m with 326 sequences, total weight= 123.464 avg weight= 0.378723 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30098 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1ayl/info/1ayl.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1ayl/nostruct-align/1ayl.t05-thin90.a2m.gz, have 163457 columns in 681 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhuA/nostruct-align/1vhuA.t05-thin90.a2m.gz
# 1vhuA.t05-thin90.a2m with 315 sequences, total weight= 315 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15937 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhuA/info/1vhuA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vhuA/nostruct-align/1vhuA.t05-thin90.a2m.gz, have 163649 columns in 682 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h2cA/nostruct-align/1h2cA.t05-thin90.a2m.gz
# 1h2cA.t05-thin90.a2m with 3 sequences, total weight= 2.6571 avg weight= 0.885699 8 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h2cA/info/1h2cA.stride-mixed.near-backbone-11
WARNING: skipping b, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h2cA/nostruct-align/1h2cA.t05-thin90.a2m.gz, have 163773 columns in 683 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/5n/5nul/nostruct-align/5nul.t05-thin90.a2m.gz
# 5nul.t05-thin90.a2m with 1057 sequences, total weight= 1057 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04306 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/5n/5nul/info/5nul.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/5n/5nul/nostruct-align/5nul.t05-thin90.a2m.gz, have 163911 columns in 684 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k7jA/nostruct-align/1k7jA.t05-thin90.a2m.gz
# 1k7jA.t05-thin90.a2m with 499 sequences, total weight= 158.284 avg weight= 0.317202 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30939 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k7jA/info/1k7jA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k7jA/nostruct-align/1k7jA.t05-thin90.a2m.gz, have 164117 columns in 685 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gqzA/nostruct-align/1gqzA.t05-thin90.a2m.gz
# 1gqzA.t05-thin90.a2m with 526 sequences, total weight= 526 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19215 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gqzA/info/1gqzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gqzA/nostruct-align/1gqzA.t05-thin90.a2m.gz, have 164391 columns in 686 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gxuA/nostruct-align/1gxuA.t05-thin90.a2m.gz
# 1gxuA.t05-thin90.a2m with 282 sequences, total weight= 43.8658 avg weight= 0.155552 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30091 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gxuA/info/1gxuA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gxuA/nostruct-align/1gxuA.t05-thin90.a2m.gz, have 164479 columns in 687 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fiuA/nostruct-align/1fiuA.t05-thin90.a2m.gz
# 1fiuA.t05-thin90.a2m with 4 sequences, total weight= 2.86134 avg weight= 0.715334 10 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fiuA/info/1fiuA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fiuA/nostruct-align/1fiuA.t05-thin90.a2m.gz, have 164765 columns in 688 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pfvA/nostruct-align/1pfvA.t05-thin90.a2m.gz
# 1pfvA.t05-thin90.a2m with 2581 sequences, total weight= 2581 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01945 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pfvA/info/1pfvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pfvA/nostruct-align/1pfvA.t05-thin90.a2m.gz, have 165312 columns in 689 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1csh/nostruct-align/1csh.t05-thin90.a2m.gz
# 1csh.t05-thin90.a2m with 497 sequences, total weight= 121.081 avg weight= 0.243623 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3033 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1csh/info/1csh.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1csh/nostruct-align/1csh.t05-thin90.a2m.gz, have 165747 columns in 690 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t1jA/nostruct-align/1t1jA.t05-thin90.a2m.gz
# 1t1jA.t05-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26604 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t1jA/info/1t1jA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t1jA/nostruct-align/1t1jA.t05-thin90.a2m.gz, have 165866 columns in 691 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oh4A/nostruct-align/1oh4A.t05-thin90.a2m.gz
# 1oh4A.t05-thin90.a2m with 14 sequences, total weight= 9.6616 avg weight= 0.690114 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oh4A/info/1oh4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oh4A/nostruct-align/1oh4A.t05-thin90.a2m.gz, have 166040 columns in 692 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1thfD/nostruct-align/1thfD.t05-thin90.a2m.gz
# 1thfD.t05-thin90.a2m with 682 sequences, total weight= 682 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22296 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1thfD/info/1thfD.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1thfD/nostruct-align/1thfD.t05-thin90.a2m.gz, have 166293 columns in 693 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/7a/7a3hA/nostruct-align/7a3hA.t05-thin90.a2m.gz
# 7a3hA.t05-thin90.a2m with 1997 sequences, total weight= 1997 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.821374 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/7a/7a3hA/info/7a3hA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/7a/7a3hA/nostruct-align/7a3hA.t05-thin90.a2m.gz, have 166593 columns in 694 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lbu/nostruct-align/1lbu.t05-thin90.a2m.gz
# 1lbu.t05-thin90.a2m with 363 sequences, total weight= 363 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04773 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lbu/info/1lbu.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lbu/nostruct-align/1lbu.t05-thin90.a2m.gz, have 166806 columns in 695 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ejxC/nostruct-align/1ejxC.t05-thin90.a2m.gz
# 1ejxC.t05-thin90.a2m with 2253 sequences, total weight= 2253 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23524 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ejxC/info/1ejxC.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ejxC/nostruct-align/1ejxC.t05-thin90.a2m.gz, have 167362 columns in 696 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tfe/nostruct-align/1tfe.t05-thin90.a2m.gz
# 1tfe.t05-thin90.a2m with 410 sequences, total weight= 58.6761 avg weight= 0.143112 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30053 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tfe/info/1tfe.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tfe/nostruct-align/1tfe.t05-thin90.a2m.gz, have 167504 columns in 697 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d2nA/nostruct-align/1d2nA.t05-thin90.a2m.gz
# 1d2nA.t05-thin90.a2m with 8081 sequences, total weight= 8081 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.905323 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d2nA/info/1d2nA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d2nA/nostruct-align/1d2nA.t05-thin90.a2m.gz, have 167750 columns in 698 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qd1A/nostruct-align/1qd1A.t05-thin90.a2m.gz
# 1qd1A.t05-thin90.a2m with 42 sequences, total weight= 12.2862 avg weight= 0.292528 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qd1A/info/1qd1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qd1A/nostruct-align/1qd1A.t05-thin90.a2m.gz, have 168069 columns in 699 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ogqA/nostruct-align/1ogqA.t05-thin90.a2m.gz
# 1ogqA.t05-thin90.a2m with 7207 sequences, total weight= 7207 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.968058 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ogqA/info/1ogqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ogqA/nostruct-align/1ogqA.t05-thin90.a2m.gz, have 168382 columns in 700 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v6sA/nostruct-align/1v6sA.t05-thin90.a2m.gz
# 1v6sA.t05-thin90.a2m with 402 sequences, total weight= 16.0319 avg weight= 0.0398803 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v6sA/info/1v6sA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v6sA/nostruct-align/1v6sA.t05-thin90.a2m.gz, have 168772 columns in 701 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t6uA/nostruct-align/1t6uA.t05-thin90.a2m.gz
# 1t6uA.t05-thin90.a2m with 13 sequences, total weight= 4.54698 avg weight= 0.349767 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t6uA/info/1t6uA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t6uA/nostruct-align/1t6uA.t05-thin90.a2m.gz, have 168889 columns in 702 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ekqA/nostruct-align/1ekqA.t05-thin90.a2m.gz
# 1ekqA.t05-thin90.a2m with 1567 sequences, total weight= 1567 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.976111 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ekqA/info/1ekqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ekqA/nostruct-align/1ekqA.t05-thin90.a2m.gz, have 169143 columns in 703 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1njhA/nostruct-align/1njhA.t05-thin90.a2m.gz
# 1njhA.t05-thin90.a2m with 13 sequences, total weight= 3.43668 avg weight= 0.26436 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1njhA/info/1njhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1njhA/nostruct-align/1njhA.t05-thin90.a2m.gz, have 169251 columns in 704 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xfsA/nostruct-align/1xfsA.t05-thin90.a2m.gz
# 1xfsA.t05-thin90.a2m with 670 sequences, total weight= 670 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.829083 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xfsA/info/1xfsA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1x/1xfsA/nostruct-align/1xfsA.t05-thin90.a2m.gz, have 169405 columns in 705 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lriA/nostruct-align/1lriA.t05-thin90.a2m.gz
# 1lriA.t05-thin90.a2m with 35 sequences, total weight= 6.12539 avg weight= 0.175011 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lriA/info/1lriA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lriA/nostruct-align/1lriA.t05-thin90.a2m.gz, have 169503 columns in 706 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dzkA/nostruct-align/1dzkA.t05-thin90.a2m.gz
# 1dzkA.t05-thin90.a2m with 274 sequences, total weight= 274 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05652 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dzkA/info/1dzkA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dzkA/nostruct-align/1dzkA.t05-thin90.a2m.gz, have 169651 columns in 707 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhsA/nostruct-align/1vhsA.t05-thin90.a2m.gz
# 1vhsA.t05-thin90.a2m with 5905 sequences, total weight= 5905 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.758755 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhsA/info/1vhsA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vhsA/nostruct-align/1vhsA.t05-thin90.a2m.gz, have 169816 columns in 708 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1muwA/nostruct-align/1muwA.t05-thin90.a2m.gz
# 1muwA.t05-thin90.a2m with 827 sequences, total weight= 827 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04502 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1muwA/info/1muwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1muwA/nostruct-align/1muwA.t05-thin90.a2m.gz, have 170202 columns in 709 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1orvA/nostruct-align/1orvA.t05-thin90.a2m.gz
# 1orvA.t05-thin90.a2m with 7505 sequences, total weight= 7505 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.830014 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1orvA/info/1orvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1orvA/nostruct-align/1orvA.t05-thin90.a2m.gz, have 170930 columns in 710 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jhgA/nostruct-align/1jhgA.t05-thin90.a2m.gz
# 1jhgA.t05-thin90.a2m with 49 sequences, total weight= 20.6095 avg weight= 0.420602 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jhgA/info/1jhgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jhgA/nostruct-align/1jhgA.t05-thin90.a2m.gz, have 171031 columns in 711 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r0uA/nostruct-align/1r0uA.t05-thin90.a2m.gz
# 1r0uA.t05-thin90.a2m with 39 sequences, total weight= 39 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2556 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r0uA/info/1r0uA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r0uA/nostruct-align/1r0uA.t05-thin90.a2m.gz, have 171173 columns in 712 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ed8A/nostruct-align/1ed8A.t05-thin90.a2m.gz
# 1ed8A.t05-thin90.a2m with 712 sequences, total weight= 712 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02726 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ed8A/info/1ed8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ed8A/nostruct-align/1ed8A.t05-thin90.a2m.gz, have 171622 columns in 713 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kngA/nostruct-align/1kngA.t05-thin90.a2m.gz
# 1kngA.t05-thin90.a2m with 4120 sequences, total weight= 4120 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.932247 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kngA/info/1kngA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kngA/nostruct-align/1kngA.t05-thin90.a2m.gz, have 171766 columns in 714 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gmuA/nostruct-align/1gmuA.t05-thin90.a2m.gz
# 1gmuA.t05-thin90.a2m with 91 sequences, total weight= 47.7919 avg weight= 0.525186 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gmuA/info/1gmuA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gmuA/nostruct-align/1gmuA.t05-thin90.a2m.gz, have 171904 columns in 715 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1aohA/nostruct-align/1aohA.t05-thin90.a2m.gz
# 1aohA.t05-thin90.a2m with 50 sequences, total weight= 13.6892 avg weight= 0.273785 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1aohA/info/1aohA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1aohA/nostruct-align/1aohA.t05-thin90.a2m.gz, have 172047 columns in 716 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g6gA/nostruct-align/1g6gA.t05-thin90.a2m.gz
# 1g6gA.t05-thin90.a2m with 819 sequences, total weight= 819 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.979376 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g6gA/info/1g6gA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g6gA/nostruct-align/1g6gA.t05-thin90.a2m.gz, have 172174 columns in 717 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1din/nostruct-align/1din.t05-thin90.a2m.gz
# 1din.t05-thin90.a2m with 9471 sequences, total weight= 9471 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.740607 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1din/info/1din.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1din/nostruct-align/1din.t05-thin90.a2m.gz, have 172407 columns in 718 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gyvA/nostruct-align/1gyvA.t05-thin90.a2m.gz
# 1gyvA.t05-thin90.a2m with 72 sequences, total weight= 39.4304 avg weight= 0.547645 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gyvA/info/1gyvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gyvA/nostruct-align/1gyvA.t05-thin90.a2m.gz, have 172527 columns in 719 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1ls9A/nostruct-align/1ls9A.t05-thin90.a2m.gz
# 1ls9A.t05-thin90.a2m with 1243 sequences, total weight= 1243 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10171 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1ls9A/info/1ls9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1ls9A/nostruct-align/1ls9A.t05-thin90.a2m.gz, have 172618 columns in 720 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o3uA/nostruct-align/1o3uA.t05-thin90.a2m.gz
# 1o3uA.t05-thin90.a2m with 108 sequences, total weight= 108 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17315 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o3uA/info/1o3uA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o3uA/nostruct-align/1o3uA.t05-thin90.a2m.gz, have 172738 columns in 721 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e19A/nostruct-align/1e19A.t05-thin90.a2m.gz
# 1e19A.t05-thin90.a2m with 912 sequences, total weight= 912 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19861 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e19A/info/1e19A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e19A/nostruct-align/1e19A.t05-thin90.a2m.gz, have 173051 columns in 722 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iujA/nostruct-align/1iujA.t05-thin90.a2m.gz
# 1iujA.t05-thin90.a2m with 344 sequences, total weight= 344 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00356 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iujA/info/1iujA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iujA/nostruct-align/1iujA.t05-thin90.a2m.gz, have 173153 columns in 723 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g5aA/nostruct-align/1g5aA.t05-thin90.a2m.gz
# 1g5aA.t05-thin90.a2m with 1854 sequences, total weight= 1854 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04706 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g5aA/info/1g5aA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g5aA/nostruct-align/1g5aA.t05-thin90.a2m.gz, have 173781 columns in 724 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jtvA/nostruct-align/1jtvA.t05-thin90.a2m.gz
# 1jtvA.t05-thin90.a2m with 10222 sequences, total weight= 10222 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02661 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jtvA/info/1jtvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jtvA/nostruct-align/1jtvA.t05-thin90.a2m.gz, have 174059 columns in 725 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1ako/nostruct-align/1ako.t05-thin90.a2m.gz
# 1ako.t05-thin90.a2m with 1630 sequences, total weight= 1630 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.867332 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1ako/info/1ako.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1ako/nostruct-align/1ako.t05-thin90.a2m.gz, have 174327 columns in 726 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ijyA/nostruct-align/1ijyA.t05-thin90.a2m.gz
# 1ijyA.t05-thin90.a2m with 179 sequences, total weight= 67.6333 avg weight= 0.37784 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30084 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ijyA/info/1ijyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ijyA/nostruct-align/1ijyA.t05-thin90.a2m.gz, have 174449 columns in 727 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nh0A/nostruct-align/1nh0A.t05-thin90.a2m.gz
# 1nh0A.t05-thin90.a2m with 989 sequences, total weight= 3.00252 avg weight= 0.00303591 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nh0A/info/1nh0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nh0A/nostruct-align/1nh0A.t05-thin90.a2m.gz, have 174548 columns in 728 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k2eA/nostruct-align/1k2eA.t05-thin90.a2m.gz
# 1k2eA.t05-thin90.a2m with 2457 sequences, total weight= 2457 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.848844 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k2eA/info/1k2eA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k2eA/nostruct-align/1k2eA.t05-thin90.a2m.gz, have 174700 columns in 729 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f5nA/nostruct-align/1f5nA.t05-thin90.a2m.gz
# 1f5nA.t05-thin90.a2m with 410 sequences, total weight= 410 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04863 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f5nA/info/1f5nA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f5nA/nostruct-align/1f5nA.t05-thin90.a2m.gz, have 175270 columns in 730 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uuzA/nostruct-align/1uuzA.t05-thin90.a2m.gz
# 1uuzA.t05-thin90.a2m with 16 sequences, total weight= 9.76028 avg weight= 0.610018 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uuzA/info/1uuzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uuzA/nostruct-align/1uuzA.t05-thin90.a2m.gz, have 175399 columns in 731 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cex/nostruct-align/1cex.t05-thin90.a2m.gz
# 1cex.t05-thin90.a2m with 285 sequences, total weight= 285 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.958875 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cex/info/1cex.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cex/nostruct-align/1cex.t05-thin90.a2m.gz, have 175596 columns in 732 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pdo/nostruct-align/1pdo.t05-thin90.a2m.gz
# 1pdo.t05-thin90.a2m with 199 sequences, total weight= 119.758 avg weight= 0.6018 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30263 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pdo/info/1pdo.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pdo/nostruct-align/1pdo.t05-thin90.a2m.gz, have 175725 columns in 733 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j98A/nostruct-align/1j98A.t05-thin90.a2m.gz
# 1j98A.t05-thin90.a2m with 74 sequences, total weight= 7.00744 avg weight= 0.0946952 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j98A/info/1j98A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j98A/nostruct-align/1j98A.t05-thin90.a2m.gz, have 175879 columns in 734 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qqfA/nostruct-align/1qqfA.t05-thin90.a2m.gz
# 1qqfA.t05-thin90.a2m with 514 sequences, total weight= 514 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14162 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qqfA/info/1qqfA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qqfA/nostruct-align/1qqfA.t05-thin90.a2m.gz, have 176156 columns in 735 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gy7A/nostruct-align/1gy7A.t05-thin90.a2m.gz
# 1gy7A.t05-thin90.a2m with 151 sequences, total weight= 126.225 avg weight= 0.835924 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30071 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gy7A/info/1gy7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gy7A/nostruct-align/1gy7A.t05-thin90.a2m.gz, have 176277 columns in 736 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a3aA/nostruct-align/1a3aA.t05-thin90.a2m.gz
# 1a3aA.t05-thin90.a2m with 521 sequences, total weight= 521 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23239 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a3aA/info/1a3aA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a3aA/nostruct-align/1a3aA.t05-thin90.a2m.gz, have 176422 columns in 737 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jidA/nostruct-align/1jidA.t05-thin90.a2m.gz
# 1jidA.t05-thin90.a2m with 65 sequences, total weight= 35.9429 avg weight= 0.552968 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jidA/info/1jidA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jidA/nostruct-align/1jidA.t05-thin90.a2m.gz, have 176536 columns in 738 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kv7A/nostruct-align/1kv7A.t05-thin90.a2m.gz
# 1kv7A.t05-thin90.a2m with 868 sequences, total weight= 868 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10639 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kv7A/info/1kv7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kv7A/nostruct-align/1kv7A.t05-thin90.a2m.gz, have 176999 columns in 739 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l2hA/nostruct-align/1l2hA.t05-thin90.a2m.gz
# 1l2hA.t05-thin90.a2m with 113 sequences, total weight= 46.3337 avg weight= 0.410033 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l2hA/info/1l2hA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l2hA/nostruct-align/1l2hA.t05-thin90.a2m.gz, have 177143 columns in 740 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gvdA/nostruct-align/1gvdA.t05-thin90.a2m.gz
# 1gvdA.t05-thin90.a2m with 808 sequences, total weight= 33.7987 avg weight= 0.0418301 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30048 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gvdA/info/1gvdA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gvdA/nostruct-align/1gvdA.t05-thin90.a2m.gz, have 177195 columns in 741 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w1oA/nostruct-align/1w1oA.t05-thin90.a2m.gz
# 1w1oA.t05-thin90.a2m with 1475 sequences, total weight= 1475 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.903023 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w1oA/info/1w1oA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w1oA/nostruct-align/1w1oA.t05-thin90.a2m.gz, have 177674 columns in 742 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/4f/4fiv/nostruct-align/4fiv.t05-thin90.a2m.gz
# 4fiv.t05-thin90.a2m with 762 sequences, total weight= 4.61816 avg weight= 0.00606058 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/4f/4fiv/info/4fiv.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/4f/4fiv/nostruct-align/4fiv.t05-thin90.a2m.gz, have 177787 columns in 743 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1atzA/nostruct-align/1atzA.t05-thin90.a2m.gz
# 1atzA.t05-thin90.a2m with 1573 sequences, total weight= 1573 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02758 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1atzA/info/1atzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1atzA/nostruct-align/1atzA.t05-thin90.a2m.gz, have 177971 columns in 744 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kmtA/nostruct-align/1kmtA.t05-thin90.a2m.gz
# 1kmtA.t05-thin90.a2m with 66 sequences, total weight= 17.2552 avg weight= 0.261443 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kmtA/info/1kmtA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kmtA/nostruct-align/1kmtA.t05-thin90.a2m.gz, have 178109 columns in 745 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v9yA/nostruct-align/1v9yA.t05-thin90.a2m.gz
# 1v9yA.t05-thin90.a2m with 4746 sequences, total weight= 4746 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.957119 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v9yA/info/1v9yA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v9yA/nostruct-align/1v9yA.t05-thin90.a2m.gz, have 178212 columns in 746 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lj8A/nostruct-align/1lj8A.t05-thin90.a2m.gz
# 1lj8A.t05-thin90.a2m with 181 sequences, total weight= 76.7135 avg weight= 0.423832 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30049 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lj8A/info/1lj8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lj8A/nostruct-align/1lj8A.t05-thin90.a2m.gz, have 178704 columns in 747 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1ji1A/nostruct-align/1ji1A.t05-thin90.a2m.gz
# 1ji1A.t05-thin90.a2m with 1829 sequences, total weight= 1829 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03892 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1ji1A/info/1ji1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1ji1A/nostruct-align/1ji1A.t05-thin90.a2m.gz, have 179341 columns in 748 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h6hA/nostruct-align/1h6hA.t05-thin90.a2m.gz
# 1h6hA.t05-thin90.a2m with 321 sequences, total weight= 321 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0919 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h6hA/info/1h6hA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h6hA/nostruct-align/1h6hA.t05-thin90.a2m.gz, have 179484 columns in 749 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ocyA/nostruct-align/1ocyA.t05-thin90.a2m.gz
# 1ocyA.t05-thin90.a2m with 153 sequences, total weight= 153 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17389 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ocyA/info/1ocyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ocyA/nostruct-align/1ocyA.t05-thin90.a2m.gz, have 179682 columns in 750 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fobA/nostruct-align/1fobA.t05-thin90.a2m.gz
# 1fobA.t05-thin90.a2m with 1588 sequences, total weight= 1588 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.893431 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fobA/info/1fobA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fobA/nostruct-align/1fobA.t05-thin90.a2m.gz, have 180016 columns in 751 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h2wA/nostruct-align/1h2wA.t05-thin90.a2m.gz
# 1h2wA.t05-thin90.a2m with 7651 sequences, total weight= 7651 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.820656 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h2wA/info/1h2wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h2wA/nostruct-align/1h2wA.t05-thin90.a2m.gz, have 180726 columns in 752 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kwgA/nostruct-align/1kwgA.t05-thin90.a2m.gz
# 1kwgA.t05-thin90.a2m with 530 sequences, total weight= 530 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02153 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kwgA/info/1kwgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kwgA/nostruct-align/1kwgA.t05-thin90.a2m.gz, have 181370 columns in 753 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dwkA/nostruct-align/1dwkA.t05-thin90.a2m.gz
# 1dwkA.t05-thin90.a2m with 53 sequences, total weight= 10.1383 avg weight= 0.191288 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dwkA/info/1dwkA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dwkA/nostruct-align/1dwkA.t05-thin90.a2m.gz, have 181526 columns in 754 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h2bA/nostruct-align/1h2bA.t05-thin90.a2m.gz
# 1h2bA.t05-thin90.a2m with 3717 sequences, total weight= 3717 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18251 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h2bA/info/1h2bA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h2bA/nostruct-align/1h2bA.t05-thin90.a2m.gz, have 181869 columns in 755 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uf5A/nostruct-align/1uf5A.t05-thin90.a2m.gz
# 1uf5A.t05-thin90.a2m with 1175 sequences, total weight= 1175 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07228 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uf5A/info/1uf5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uf5A/nostruct-align/1uf5A.t05-thin90.a2m.gz, have 182172 columns in 756 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ijbA/nostruct-align/1ijbA.t05-thin90.a2m.gz
# 1ijbA.t05-thin90.a2m with 1793 sequences, total weight= 1793 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.955897 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ijbA/info/1ijbA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ijbA/nostruct-align/1ijbA.t05-thin90.a2m.gz, have 182374 columns in 757 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lqvA/nostruct-align/1lqvA.t05-thin90.a2m.gz
# 1lqvA.t05-thin90.a2m with 1258 sequences, total weight= 110.994 avg weight= 0.0882308 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30417 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lqvA/info/1lqvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lqvA/nostruct-align/1lqvA.t05-thin90.a2m.gz, have 182546 columns in 758 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dowA/nostruct-align/1dowA.t05-thin90.a2m.gz
# 1dowA.t05-thin90.a2m with 56 sequences, total weight= 18.3134 avg weight= 0.327026 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dowA/info/1dowA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dowA/nostruct-align/1dowA.t05-thin90.a2m.gz, have 182751 columns in 759 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cc8A/nostruct-align/1cc8A.t05-thin90.a2m.gz
# 1cc8A.t05-thin90.a2m with 376 sequences, total weight= 92.2948 avg weight= 0.245465 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30517 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cc8A/info/1cc8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cc8A/nostruct-align/1cc8A.t05-thin90.a2m.gz, have 182823 columns in 760 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qf8A/nostruct-align/1qf8A.t05-thin90.a2m.gz
# 1qf8A.t05-thin90.a2m with 70 sequences, total weight= 11.6318 avg weight= 0.166169 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qf8A/info/1qf8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qf8A/nostruct-align/1qf8A.t05-thin90.a2m.gz, have 182990 columns in 761 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gsoA/nostruct-align/1gsoA.t05-thin90.a2m.gz
# 1gsoA.t05-thin90.a2m with 2823 sequences, total weight= 2823 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0479 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gsoA/info/1gsoA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gsoA/nostruct-align/1gsoA.t05-thin90.a2m.gz, have 183409 columns in 762 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d0cA/nostruct-align/1d0cA.t05-thin90.a2m.gz
# 1d0cA.t05-thin90.a2m with 83 sequences, total weight= 7.90956 avg weight= 0.0952958 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d0cA/info/1d0cA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d0cA/nostruct-align/1d0cA.t05-thin90.a2m.gz, have 183825 columns in 763 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gq6A/nostruct-align/1gq6A.t05-thin90.a2m.gz
# 1gq6A.t05-thin90.a2m with 413 sequences, total weight= 413 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25687 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gq6A/info/1gq6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gq6A/nostruct-align/1gq6A.t05-thin90.a2m.gz, have 184120 columns in 764 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oaa/nostruct-align/1oaa.t05-thin90.a2m.gz
# 1oaa.t05-thin90.a2m with 9220 sequences, total weight= 9220 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11006 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oaa/info/1oaa.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oaa/nostruct-align/1oaa.t05-thin90.a2m.gz, have 184379 columns in 765 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rqpA/nostruct-align/1rqpA.t05-thin90.a2m.gz
# 1rqpA.t05-thin90.a2m with 76 sequences, total weight= 27.0457 avg weight= 0.355864 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rqpA/info/1rqpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rqpA/nostruct-align/1rqpA.t05-thin90.a2m.gz, have 184670 columns in 766 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/4u/4uagA/nostruct-align/4uagA.t05-thin90.a2m.gz
# 4uagA.t05-thin90.a2m with 1527 sequences, total weight= 1527 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11548 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/4u/4uagA/info/4uagA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/4u/4uagA/nostruct-align/4uagA.t05-thin90.a2m.gz, have 185099 columns in 767 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vpt/nostruct-align/1vpt.t05-thin90.a2m.gz
# 1vpt.t05-thin90.a2m with 31 sequences, total weight= 14.6656 avg weight= 0.473083 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vpt/info/1vpt.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vpt/nostruct-align/1vpt.t05-thin90.a2m.gz, have 185390 columns in 768 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p4cA/nostruct-align/1p4cA.t05-thin90.a2m.gz
# 1p4cA.t05-thin90.a2m with 2205 sequences, total weight= 2205 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.993911 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p4cA/info/1p4cA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p4cA/nostruct-align/1p4cA.t05-thin90.a2m.gz, have 185743 columns in 769 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l9xA/nostruct-align/1l9xA.t05-thin90.a2m.gz
# 1l9xA.t05-thin90.a2m with 2518 sequences, total weight= 2518 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06802 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l9xA/info/1l9xA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l9xA/nostruct-align/1l9xA.t05-thin90.a2m.gz, have 186031 columns in 770 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n71A/nostruct-align/1n71A.t05-thin90.a2m.gz
# 1n71A.t05-thin90.a2m with 5032 sequences, total weight= 5032 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.870693 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n71A/info/1n71A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n71A/nostruct-align/1n71A.t05-thin90.a2m.gz, have 186211 columns in 771 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a7s/nostruct-align/1a7s.t05-thin90.a2m.gz
# 1a7s.t05-thin90.a2m with 2955 sequences, total weight= 2334.13 avg weight= 0.789892 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3073 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a7s/info/1a7s.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a7s/nostruct-align/1a7s.t05-thin90.a2m.gz, have 186432 columns in 772 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p5fA/nostruct-align/1p5fA.t05-thin90.a2m.gz
# 1p5fA.t05-thin90.a2m with 1120 sequences, total weight= 1120 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13497 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p5fA/info/1p5fA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p5fA/nostruct-align/1p5fA.t05-thin90.a2m.gz, have 186618 columns in 773 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i58A/nostruct-align/1i58A.t05-thin90.a2m.gz
# 1i58A.t05-thin90.a2m with 5874 sequences, total weight= 5874 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24727 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i58A/info/1i58A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i58A/nostruct-align/1i58A.t05-thin90.a2m.gz, have 186807 columns in 774 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uujA/nostruct-align/1uujA.t05-thin90.a2m.gz
# 1uujA.t05-thin90.a2m with 24 sequences, total weight= 8.111 avg weight= 0.337958 27 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uujA/info/1uujA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uujA/nostruct-align/1uujA.t05-thin90.a2m.gz, have 186883 columns in 775 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e0tA/nostruct-align/1e0tA.t05-thin90.a2m.gz
# 1e0tA.t05-thin90.a2m with 426 sequences, total weight= 34.2458 avg weight= 0.0803891 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e0tA/info/1e0tA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e0tA/nostruct-align/1e0tA.t05-thin90.a2m.gz, have 187329 columns in 776 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p0hA/nostruct-align/1p0hA.t05-thin90.a2m.gz
# 1p0hA.t05-thin90.a2m with 5882 sequences, total weight= 5882 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.662395 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p0hA/info/1p0hA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p0hA/nostruct-align/1p0hA.t05-thin90.a2m.gz, have 187619 columns in 777 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1usmA/nostruct-align/1usmA.t05-thin90.a2m.gz
# 1usmA.t05-thin90.a2m with 169 sequences, total weight= 26.1009 avg weight= 0.154443 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1usmA/info/1usmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1usmA/nostruct-align/1usmA.t05-thin90.a2m.gz, have 187696 columns in 778 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fr2B/nostruct-align/1fr2B.t05-thin90.a2m.gz
# 1fr2B.t05-thin90.a2m with 21 sequences, total weight= 4.90623 avg weight= 0.23363 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fr2B/info/1fr2B.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fr2B/nostruct-align/1fr2B.t05-thin90.a2m.gz, have 187827 columns in 779 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vdkA/nostruct-align/1vdkA.t05-thin90.a2m.gz
# 1vdkA.t05-thin90.a2m with 957 sequences, total weight= 255.682 avg weight= 0.267171 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31407 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vdkA/info/1vdkA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vdkA/nostruct-align/1vdkA.t05-thin90.a2m.gz, have 188285 columns in 780 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2s/2sli/nostruct-align/2sli.t05-thin90.a2m.gz
# 2sli.t05-thin90.a2m with 1087 sequences, total weight= 1087 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18884 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2s/2sli/info/2sli.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2s/2sli/nostruct-align/2sli.t05-thin90.a2m.gz, have 188964 columns in 781 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dz3A/nostruct-align/1dz3A.t05-thin90.a2m.gz
# 1dz3A.t05-thin90.a2m with 8996 sequences, total weight= 8996 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25566 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dz3A/info/1dz3A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dz3A/nostruct-align/1dz3A.t05-thin90.a2m.gz, have 189087 columns in 782 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o2dA/nostruct-align/1o2dA.t05-thin90.a2m.gz
# 1o2dA.t05-thin90.a2m with 965 sequences, total weight= 965 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17336 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o2dA/info/1o2dA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o2dA/nostruct-align/1o2dA.t05-thin90.a2m.gz, have 189446 columns in 783 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1molA/nostruct-align/1molA.t05-thin90.a2m.gz
# 1molA.t05-thin90.a2m with 3 sequences, total weight= 2.65834 avg weight= 0.886113 6 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1molA/info/1molA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1molA/nostruct-align/1molA.t05-thin90.a2m.gz, have 189540 columns in 784 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qs1A/nostruct-align/1qs1A.t05-thin90.a2m.gz
# 1qs1A.t05-thin90.a2m with 126 sequences, total weight= 126 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10056 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qs1A/info/1qs1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qs1A/nostruct-align/1qs1A.t05-thin90.a2m.gz, have 189942 columns in 785 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h4gA/nostruct-align/1h4gA.t05-thin90.a2m.gz
# 1h4gA.t05-thin90.a2m with 133 sequences, total weight= 12.6193 avg weight= 0.0948816 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h4gA/info/1h4gA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h4gA/nostruct-align/1h4gA.t05-thin90.a2m.gz, have 190148 columns in 786 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m9xC/nostruct-align/1m9xC.t05-thin90.a2m.gz
# 1m9xC.t05-thin90.a2m with 263 sequences, total weight= 13.2259 avg weight= 0.0502885 25 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m9xC/info/1m9xC.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m9xC/nostruct-align/1m9xC.t05-thin90.a2m.gz, have 190294 columns in 787 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v8cA/nostruct-align/1v8cA.t05-thin90.a2m.gz
# 1v8cA.t05-thin90.a2m with 263 sequences, total weight= 109.585 avg weight= 0.416674 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v8cA/info/1v8cA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v8cA/nostruct-align/1v8cA.t05-thin90.a2m.gz, have 190459 columns in 788 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p5zB/nostruct-align/1p5zB.t05-thin90.a2m.gz
# 1p5zB.t05-thin90.a2m with 3177 sequences, total weight= 3177 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.814722 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p5zB/info/1p5zB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p5zB/nostruct-align/1p5zB.t05-thin90.a2m.gz, have 190688 columns in 789 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1khxA/nostruct-align/1khxA.t05-thin90.a2m.gz
# 1khxA.t05-thin90.a2m with 93 sequences, total weight= 29.36 avg weight= 0.315698 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1khxA/info/1khxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1khxA/nostruct-align/1khxA.t05-thin90.a2m.gz, have 190891 columns in 790 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1st9A/nostruct-align/1st9A.t05-thin90.a2m.gz
# 1st9A.t05-thin90.a2m with 3943 sequences, total weight= 3943 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.981517 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1st9A/info/1st9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1st9A/nostruct-align/1st9A.t05-thin90.a2m.gz, have 191028 columns in 791 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mk4A/nostruct-align/1mk4A.t05-thin90.a2m.gz
# 1mk4A.t05-thin90.a2m with 6021 sequences, total weight= 6021 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.765443 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mk4A/info/1mk4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mk4A/nostruct-align/1mk4A.t05-thin90.a2m.gz, have 191185 columns in 792 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f1eA/nostruct-align/1f1eA.t05-thin90.a2m.gz
# 1f1eA.t05-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.601427 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f1eA/info/1f1eA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f1eA/nostruct-align/1f1eA.t05-thin90.a2m.gz, have 191336 columns in 793 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nh8A/nostruct-align/1nh8A.t05-thin90.a2m.gz
# 1nh8A.t05-thin90.a2m with 206 sequences, total weight= 36.1433 avg weight= 0.175453 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nh8A/info/1nh8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nh8A/nostruct-align/1nh8A.t05-thin90.a2m.gz, have 191612 columns in 794 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ikpA/nostruct-align/1ikpA.t05-thin90.a2m.gz
# 1ikpA.t05-thin90.a2m with 425 sequences, total weight= 61.5775 avg weight= 0.144888 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ikpA/info/1ikpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ikpA/nostruct-align/1ikpA.t05-thin90.a2m.gz, have 192211 columns in 795 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1swxA/nostruct-align/1swxA.t05-thin90.a2m.gz
# 1swxA.t05-thin90.a2m with 90 sequences, total weight= 56.3772 avg weight= 0.626413 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1swxA/info/1swxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1swxA/nostruct-align/1swxA.t05-thin90.a2m.gz, have 192409 columns in 796 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2n/2nlrA/nostruct-align/2nlrA.t05-thin90.a2m.gz
# 2nlrA.t05-thin90.a2m with 64 sequences, total weight= 34.1899 avg weight= 0.534217 43 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2n/2nlrA/info/2nlrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2n/2nlrA/nostruct-align/2nlrA.t05-thin90.a2m.gz, have 192631 columns in 797 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uebA/nostruct-align/1uebA.t05-thin90.a2m.gz
# 1uebA.t05-thin90.a2m with 295 sequences, total weight= 31.6482 avg weight= 0.107282 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uebA/info/1uebA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uebA/nostruct-align/1uebA.t05-thin90.a2m.gz, have 192815 columns in 798 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mgtA/nostruct-align/1mgtA.t05-thin90.a2m.gz
# 1mgtA.t05-thin90.a2m with 469 sequences, total weight= 469 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28042 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mgtA/info/1mgtA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mgtA/nostruct-align/1mgtA.t05-thin90.a2m.gz, have 192984 columns in 799 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dytA/nostruct-align/1dytA.t05-thin90.a2m.gz
# 1dytA.t05-thin90.a2m with 204 sequences, total weight= 44.4209 avg weight= 0.217749 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dytA/info/1dytA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dytA/nostruct-align/1dytA.t05-thin90.a2m.gz, have 193117 columns in 800 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1me4A/nostruct-align/1me4A.t05-thin90.a2m.gz
# 1me4A.t05-thin90.a2m with 1277 sequences, total weight= 284.851 avg weight= 0.223063 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32027 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1me4A/info/1me4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1me4A/nostruct-align/1me4A.t05-thin90.a2m.gz, have 193332 columns in 801 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g6xA/nostruct-align/1g6xA.t05-thin90.a2m.gz
# 1g6xA.t05-thin90.a2m with 634 sequences, total weight= 66.3137 avg weight= 0.104596 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30493 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g6xA/info/1g6xA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g6xA/nostruct-align/1g6xA.t05-thin90.a2m.gz, have 193390 columns in 802 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iwlA/nostruct-align/1iwlA.t05-thin90.a2m.gz
# 1iwlA.t05-thin90.a2m with 235 sequences, total weight= 235 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0109 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iwlA/info/1iwlA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iwlA/nostruct-align/1iwlA.t05-thin90.a2m.gz, have 193567 columns in 803 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k2xA/nostruct-align/1k2xA.t05-thin90.a2m.gz
# 1k2xA.t05-thin90.a2m with 159 sequences, total weight= 33.6592 avg weight= 0.211693 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k2xA/info/1k2xA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k2xA/nostruct-align/1k2xA.t05-thin90.a2m.gz, have 193723 columns in 804 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jiwI/nostruct-align/1jiwI.t05-thin90.a2m.gz
# 1jiwI.t05-thin90.a2m with 22 sequences, total weight= 9.18597 avg weight= 0.417544 25 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jiwI/info/1jiwI.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jiwI/nostruct-align/1jiwI.t05-thin90.a2m.gz, have 193828 columns in 805 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ogiA/nostruct-align/1ogiA.t05-thin90.a2m.gz
# 1ogiA.t05-thin90.a2m with 1873 sequences, total weight= 1873 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.978345 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ogiA/info/1ogiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ogiA/nostruct-align/1ogiA.t05-thin90.a2m.gz, have 194123 columns in 806 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mf7A/nostruct-align/1mf7A.t05-thin90.a2m.gz
# 1mf7A.t05-thin90.a2m with 1710 sequences, total weight= 1710 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.982266 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mf7A/info/1mf7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mf7A/nostruct-align/1mf7A.t05-thin90.a2m.gz, have 194317 columns in 807 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jp4A/nostruct-align/1jp4A.t05-thin90.a2m.gz
# 1jp4A.t05-thin90.a2m with 912 sequences, total weight= 912 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08891 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jp4A/info/1jp4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jp4A/nostruct-align/1jp4A.t05-thin90.a2m.gz, have 194619 columns in 808 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sjyA/nostruct-align/1sjyA.t05-thin90.a2m.gz
# 1sjyA.t05-thin90.a2m with 2543 sequences, total weight= 2543 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.856414 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sjyA/info/1sjyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sjyA/nostruct-align/1sjyA.t05-thin90.a2m.gz, have 194773 columns in 809 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1evyA/nostruct-align/1evyA.t05-thin90.a2m.gz
# 1evyA.t05-thin90.a2m with 3679 sequences, total weight= 3679 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.8834 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1evyA/info/1evyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1evyA/nostruct-align/1evyA.t05-thin90.a2m.gz, have 195119 columns in 810 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1snrA/nostruct-align/1snrA.t05-thin90.a2m.gz
# 1snrA.t05-thin90.a2m with 1287 sequences, total weight= 1287 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05301 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1snrA/info/1snrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1snrA/nostruct-align/1snrA.t05-thin90.a2m.gz, have 195455 columns in 811 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nkgA/nostruct-align/1nkgA.t05-thin90.a2m.gz
# 1nkgA.t05-thin90.a2m with 41 sequences, total weight= 19.7144 avg weight= 0.48084 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nkgA/info/1nkgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nkgA/nostruct-align/1nkgA.t05-thin90.a2m.gz, have 195963 columns in 812 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g12A/nostruct-align/1g12A.t05-thin90.a2m.gz
# 1g12A.t05-thin90.a2m with 52 sequences, total weight= 52 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28642 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g12A/info/1g12A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g12A/nostruct-align/1g12A.t05-thin90.a2m.gz, have 196130 columns in 813 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k3yA/nostruct-align/1k3yA.t05-thin90.a2m.gz
# 1k3yA.t05-thin90.a2m with 2561 sequences, total weight= 2561 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.984618 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k3yA/info/1k3yA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k3yA/nostruct-align/1k3yA.t05-thin90.a2m.gz, have 196351 columns in 814 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1ng6A/nostruct-align/1ng6A.t05-thin90.a2m.gz
# 1ng6A.t05-thin90.a2m with 149 sequences, total weight= 18.6348 avg weight= 0.125066 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1ng6A/info/1ng6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1ng6A/nostruct-align/1ng6A.t05-thin90.a2m.gz, have 196499 columns in 815 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1ftrA/nostruct-align/1ftrA.t05-thin90.a2m.gz
# 1ftrA.t05-thin90.a2m with 80 sequences, total weight= 6.04857 avg weight= 0.0756071 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1ftrA/info/1ftrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1ftrA/nostruct-align/1ftrA.t05-thin90.a2m.gz, have 196795 columns in 816 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1co6A/nostruct-align/1co6A.t05-thin90.a2m.gz
# 1co6A.t05-thin90.a2m with 269 sequences, total weight= 30.9325 avg weight= 0.114991 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1co6A/info/1co6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1co6A/nostruct-align/1co6A.t05-thin90.a2m.gz, have 196902 columns in 817 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nc5A/nostruct-align/1nc5A.t05-thin90.a2m.gz
# 1nc5A.t05-thin90.a2m with 185 sequences, total weight= 185 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.999646 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nc5A/info/1nc5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nc5A/nostruct-align/1nc5A.t05-thin90.a2m.gz, have 197265 columns in 818 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3n/3nul/nostruct-align/3nul.t05-thin90.a2m.gz
# 3nul.t05-thin90.a2m with 136 sequences, total weight= 50.1147 avg weight= 0.36849 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3n/3nul/info/3nul.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/3n/3nul/nostruct-align/3nul.t05-thin90.a2m.gz, have 197395 columns in 819 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qj4A/nostruct-align/1qj4A.t05-thin90.a2m.gz
# 1qj4A.t05-thin90.a2m with 7888 sequences, total weight= 7888 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.646084 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qj4A/info/1qj4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qj4A/nostruct-align/1qj4A.t05-thin90.a2m.gz, have 197651 columns in 820 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g8mA/nostruct-align/1g8mA.t05-thin90.a2m.gz
# 1g8mA.t05-thin90.a2m with 271 sequences, total weight= 14.6072 avg weight= 0.0539011 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g8mA/info/1g8mA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g8mA/nostruct-align/1g8mA.t05-thin90.a2m.gz, have 198241 columns in 821 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n8vA/nostruct-align/1n8vA.t05-thin90.a2m.gz
# 1n8vA.t05-thin90.a2m with 73 sequences, total weight= 14.5732 avg weight= 0.199633 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n8vA/info/1n8vA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n8vA/nostruct-align/1n8vA.t05-thin90.a2m.gz, have 198342 columns in 822 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o8bA/nostruct-align/1o8bA.t05-thin90.a2m.gz
# 1o8bA.t05-thin90.a2m with 221 sequences, total weight= 18.1017 avg weight= 0.0819083 43 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o8bA/info/1o8bA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o8bA/nostruct-align/1o8bA.t05-thin90.a2m.gz, have 198510 columns in 823 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f1uA/nostruct-align/1f1uA.t05-thin90.a2m.gz
# 1f1uA.t05-thin90.a2m with 1697 sequences, total weight= 1697 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.961876 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f1uA/info/1f1uA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f1uA/nostruct-align/1f1uA.t05-thin90.a2m.gz, have 198832 columns in 824 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tqjA/nostruct-align/1tqjA.t05-thin90.a2m.gz
# 1tqjA.t05-thin90.a2m with 1561 sequences, total weight= 1561 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05352 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tqjA/info/1tqjA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tqjA/nostruct-align/1tqjA.t05-thin90.a2m.gz, have 199049 columns in 825 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k5cA/nostruct-align/1k5cA.t05-thin90.a2m.gz
# 1k5cA.t05-thin90.a2m with 448 sequences, total weight= 448 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19779 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k5cA/info/1k5cA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k5cA/nostruct-align/1k5cA.t05-thin90.a2m.gz, have 199382 columns in 826 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oneA/nostruct-align/1oneA.t05-thin90.a2m.gz
# 1oneA.t05-thin90.a2m with 545 sequences, total weight= 34.8287 avg weight= 0.0639059 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oneA/info/1oneA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oneA/nostruct-align/1oneA.t05-thin90.a2m.gz, have 199818 columns in 827 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dj0A/nostruct-align/1dj0A.t05-thin90.a2m.gz
# 1dj0A.t05-thin90.a2m with 400 sequences, total weight= 106.174 avg weight= 0.265435 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30648 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dj0A/info/1dj0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dj0A/nostruct-align/1dj0A.t05-thin90.a2m.gz, have 200082 columns in 828 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q25A/nostruct-align/1q25A.t05-thin90.a2m.gz
# 1q25A.t05-thin90.a2m with 222 sequences, total weight= 222 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17008 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q25A/info/1q25A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q25A/nostruct-align/1q25A.t05-thin90.a2m.gz, have 200510 columns in 829 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gskA/nostruct-align/1gskA.t05-thin90.a2m.gz
# 1gskA.t05-thin90.a2m with 866 sequences, total weight= 866 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07017 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gskA/info/1gskA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gskA/nostruct-align/1gskA.t05-thin90.a2m.gz, have 201012 columns in 830 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j3aA/nostruct-align/1j3aA.t05-thin90.a2m.gz
# 1j3aA.t05-thin90.a2m with 328 sequences, total weight= 42.7937 avg weight= 0.130469 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j3aA/info/1j3aA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j3aA/nostruct-align/1j3aA.t05-thin90.a2m.gz, have 201141 columns in 831 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jy1A/nostruct-align/1jy1A.t05-thin90.a2m.gz
# 1jy1A.t05-thin90.a2m with 53 sequences, total weight= 52.8486 avg weight= 0.997143 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jy1A/info/1jy1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jy1A/nostruct-align/1jy1A.t05-thin90.a2m.gz, have 201580 columns in 832 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i27A/nostruct-align/1i27A.t05-thin90.a2m.gz
# 1i27A.t05-thin90.a2m with 11 sequences, total weight= 5.35869 avg weight= 0.487153 17 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i27A/info/1i27A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i27A/nostruct-align/1i27A.t05-thin90.a2m.gz, have 201653 columns in 833 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tgsI/nostruct-align/1tgsI.t05-thin90.a2m.gz
# 1tgsI.t05-thin90.a2m with 394 sequences, total weight= 124.229 avg weight= 0.315301 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31112 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tgsI/info/1tgsI.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tgsI/nostruct-align/1tgsI.t05-thin90.a2m.gz, have 201709 columns in 834 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dgwA/nostruct-align/1dgwA.t05-thin90.a2m.gz
# 1dgwA.t05-thin90.a2m with 524 sequences, total weight= 524 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17962 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dgwA/info/1dgwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dgwA/nostruct-align/1dgwA.t05-thin90.a2m.gz, have 201887 columns in 835 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w50A/nostruct-align/1w50A.t05-thin90.a2m.gz
# 1w50A.t05-thin90.a2m with 966 sequences, total weight= 966 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15555 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w50A/info/1w50A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w50A/nostruct-align/1w50A.t05-thin90.a2m.gz, have 202264 columns in 836 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gx5A/nostruct-align/1gx5A.t05-thin90.a2m.gz
# 1gx5A.t05-thin90.a2m with 216 sequences, total weight= 137.272 avg weight= 0.635518 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30032 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gx5A/info/1gx5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gx5A/nostruct-align/1gx5A.t05-thin90.a2m.gz, have 202794 columns in 837 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hztA/nostruct-align/1hztA.t05-thin90.a2m.gz
# 1hztA.t05-thin90.a2m with 2538 sequences, total weight= 2538 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.909137 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hztA/info/1hztA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hztA/nostruct-align/1hztA.t05-thin90.a2m.gz, have 202947 columns in 838 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1owlA/nostruct-align/1owlA.t05-thin90.a2m.gz
# 1owlA.t05-thin90.a2m with 418 sequences, total weight= 418 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2486 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1owlA/info/1owlA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1owlA/nostruct-align/1owlA.t05-thin90.a2m.gz, have 203420 columns in 839 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fpoA/nostruct-align/1fpoA.t05-thin90.a2m.gz
# 1fpoA.t05-thin90.a2m with 2116 sequences, total weight= 2116 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0275 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fpoA/info/1fpoA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fpoA/nostruct-align/1fpoA.t05-thin90.a2m.gz, have 203591 columns in 840 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rrmA/nostruct-align/1rrmA.t05-thin90.a2m.gz
# 1rrmA.t05-thin90.a2m with 967 sequences, total weight= 967 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1703 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rrmA/info/1rrmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rrmA/nostruct-align/1rrmA.t05-thin90.a2m.gz, have 203976 columns in 841 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qsaA/nostruct-align/1qsaA.t05-thin90.a2m.gz
# 1qsaA.t05-thin90.a2m with 638 sequences, total weight= 638 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.962672 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qsaA/info/1qsaA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qsaA/nostruct-align/1qsaA.t05-thin90.a2m.gz, have 204594 columns in 842 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ohlA/nostruct-align/1ohlA.t05-thin90.a2m.gz
# 1ohlA.t05-thin90.a2m with 278 sequences, total weight= 10.4004 avg weight= 0.0374116 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ohlA/info/1ohlA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ohlA/nostruct-align/1ohlA.t05-thin90.a2m.gz, have 204934 columns in 843 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oygA/nostruct-align/1oygA.t05-thin90.a2m.gz
# 1oygA.t05-thin90.a2m with 351 sequences, total weight= 351 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19678 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oygA/info/1oygA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oygA/nostruct-align/1oygA.t05-thin90.a2m.gz, have 205374 columns in 844 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1khcA/nostruct-align/1khcA.t05-thin90.a2m.gz
# 1khcA.t05-thin90.a2m with 248 sequences, total weight= 248 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03111 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1khcA/info/1khcA.stride-mixed.near-backbone-11
WARNING: skipping f, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1k/1khcA/nostruct-align/1khcA.t05-thin90.a2m.gz, have 205509 columns in 845 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nlqA/nostruct-align/1nlqA.t05-thin90.a2m.gz
# 1nlqA.t05-thin90.a2m with 41 sequences, total weight= 10.0598 avg weight= 0.245361 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nlqA/info/1nlqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nlqA/nostruct-align/1nlqA.t05-thin90.a2m.gz, have 205614 columns in 846 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b2pA/nostruct-align/1b2pA.t05-thin90.a2m.gz
# 1b2pA.t05-thin90.a2m with 169 sequences, total weight= 72.4813 avg weight= 0.428884 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30058 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b2pA/info/1b2pA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1b2pA/nostruct-align/1b2pA.t05-thin90.a2m.gz, have 205733 columns in 847 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ugpA/nostruct-align/1ugpA.t05-thin90.a2m.gz
# 1ugpA.t05-thin90.a2m with 36 sequences, total weight= 7.53021 avg weight= 0.209172 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ugpA/info/1ugpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ugpA/nostruct-align/1ugpA.t05-thin90.a2m.gz, have 205936 columns in 848 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o8xA/nostruct-align/1o8xA.t05-thin90.a2m.gz
# 1o8xA.t05-thin90.a2m with 3559 sequences, total weight= 3559 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.985666 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o8xA/info/1o8xA.stride-mixed.near-backbone-11
WARNING: skipping a, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o8xA/nostruct-align/1o8xA.t05-thin90.a2m.gz, have 206079 columns in 849 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nulA/nostruct-align/1nulA.t05-thin90.a2m.gz
# 1nulA.t05-thin90.a2m with 719 sequences, total weight= 719 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16986 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nulA/info/1nulA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nulA/nostruct-align/1nulA.t05-thin90.a2m.gz, have 206221 columns in 850 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lugA/nostruct-align/1lugA.t05-thin90.a2m.gz
# 1lugA.t05-thin90.a2m with 410 sequences, total weight= 117.943 avg weight= 0.287665 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30341 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lugA/info/1lugA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lugA/nostruct-align/1lugA.t05-thin90.a2m.gz, have 206480 columns in 851 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tca/nostruct-align/1tca.t05-thin90.a2m.gz
# 1tca.t05-thin90.a2m with 7181 sequences, total weight= 7181 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.701543 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tca/info/1tca.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tca/nostruct-align/1tca.t05-thin90.a2m.gz, have 206797 columns in 852 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1behA/nostruct-align/1behA.t05-thin90.a2m.gz
# 1behA.t05-thin90.a2m with 356 sequences, total weight= 356 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20268 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1behA/info/1behA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1behA/nostruct-align/1behA.t05-thin90.a2m.gz, have 206981 columns in 853 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oaiA/nostruct-align/1oaiA.t05-thin90.a2m.gz
# 1oaiA.t05-thin90.a2m with 21 sequences, total weight= 7.98117 avg weight= 0.380056 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oaiA/info/1oaiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oaiA/nostruct-align/1oaiA.t05-thin90.a2m.gz, have 207040 columns in 854 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sgwA/nostruct-align/1sgwA.t05-thin90.a2m.gz
# 1sgwA.t05-thin90.a2m with 19960 sequences, total weight= 19960 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27461 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sgwA/info/1sgwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sgwA/nostruct-align/1sgwA.t05-thin90.a2m.gz, have 207240 columns in 855 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nkiA/nostruct-align/1nkiA.t05-thin90.a2m.gz
# 1nkiA.t05-thin90.a2m with 2630 sequences, total weight= 2630 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.87014 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nkiA/info/1nkiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nkiA/nostruct-align/1nkiA.t05-thin90.a2m.gz, have 207374 columns in 856 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rv9A/nostruct-align/1rv9A.t05-thin90.a2m.gz
# 1rv9A.t05-thin90.a2m with 205 sequences, total weight= 46.5233 avg weight= 0.226943 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30046 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rv9A/info/1rv9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rv9A/nostruct-align/1rv9A.t05-thin90.a2m.gz, have 207616 columns in 857 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v58A/nostruct-align/1v58A.t05-thin90.a2m.gz
# 1v58A.t05-thin90.a2m with 817 sequences, total weight= 817 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.93017 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v58A/info/1v58A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v58A/nostruct-align/1v58A.t05-thin90.a2m.gz, have 207845 columns in 858 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kllA/nostruct-align/1kllA.t05-thin90.a2m.gz
# 1kllA.t05-thin90.a2m with 2595 sequences, total weight= 2595 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.852582 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kllA/info/1kllA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kllA/nostruct-align/1kllA.t05-thin90.a2m.gz, have 207973 columns in 859 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u4gA/nostruct-align/1u4gA.t05-thin90.a2m.gz
# 1u4gA.t05-thin90.a2m with 165 sequences, total weight= 158.452 avg weight= 0.960314 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u4gA/info/1u4gA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1u4gA/nostruct-align/1u4gA.t05-thin90.a2m.gz, have 208271 columns in 860 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1roaA/nostruct-align/1roaA.t05-thin90.a2m.gz
# 1roaA.t05-thin90.a2m with 318 sequences, total weight= 318 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1516 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1roaA/info/1roaA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1roaA/nostruct-align/1roaA.t05-thin90.a2m.gz, have 208382 columns in 861 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1ctf/nostruct-align/1ctf.t05-thin90.a2m.gz
# 1ctf.t05-thin90.a2m with 269 sequences, total weight= 8.32053 avg weight= 0.0309313 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1ctf/info/1ctf.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1ctf/nostruct-align/1ctf.t05-thin90.a2m.gz, have 208450 columns in 862 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gai/nostruct-align/1gai.t05-thin90.a2m.gz
# 1gai.t05-thin90.a2m with 213 sequences, total weight= 213 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19259 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gai/info/1gai.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gai/nostruct-align/1gai.t05-thin90.a2m.gz, have 208922 columns in 863 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jsdB/nostruct-align/1jsdB.t05-thin90.a2m.gz
# 1jsdB.t05-thin90.a2m with 49 sequences, total weight= 4.98145 avg weight= 0.101662 20 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jsdB/info/1jsdB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jsdB/nostruct-align/1jsdB.t05-thin90.a2m.gz, have 209082 columns in 864 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2p/2pth/nostruct-align/2pth.t05-thin90.a2m.gz
# 2pth.t05-thin90.a2m with 284 sequences, total weight= 35.8274 avg weight= 0.126153 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30043 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2p/2pth/info/2pth.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2p/2pth/nostruct-align/2pth.t05-thin90.a2m.gz, have 209275 columns in 865 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e9gA/nostruct-align/1e9gA.t05-thin90.a2m.gz
# 1e9gA.t05-thin90.a2m with 280 sequences, total weight= 55.2359 avg weight= 0.197271 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e9gA/info/1e9gA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e9gA/nostruct-align/1e9gA.t05-thin90.a2m.gz, have 209559 columns in 866 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lucA/nostruct-align/1lucA.t05-thin90.a2m.gz
# 1lucA.t05-thin90.a2m with 999 sequences, total weight= 999 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12891 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lucA/info/1lucA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lucA/nostruct-align/1lucA.t05-thin90.a2m.gz, have 209885 columns in 867 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sg6A/nostruct-align/1sg6A.t05-thin90.a2m.gz
# 1sg6A.t05-thin90.a2m with 965 sequences, total weight= 965 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17787 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sg6A/info/1sg6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sg6A/nostruct-align/1sg6A.t05-thin90.a2m.gz, have 210262 columns in 868 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s5aA/nostruct-align/1s5aA.t05-thin90.a2m.gz
# 1s5aA.t05-thin90.a2m with 630 sequences, total weight= 630 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.888981 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s5aA/info/1s5aA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s5aA/nostruct-align/1s5aA.t05-thin90.a2m.gz, have 210401 columns in 869 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h1nA/nostruct-align/1h1nA.t05-thin90.a2m.gz
# 1h1nA.t05-thin90.a2m with 1775 sequences, total weight= 1775 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.864799 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h1nA/info/1h1nA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h1nA/nostruct-align/1h1nA.t05-thin90.a2m.gz, have 210706 columns in 870 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gpiA/nostruct-align/1gpiA.t05-thin90.a2m.gz
# 1gpiA.t05-thin90.a2m with 88 sequences, total weight= 9.87576 avg weight= 0.112225 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gpiA/info/1gpiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gpiA/nostruct-align/1gpiA.t05-thin90.a2m.gz, have 211137 columns in 871 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1df4A/nostruct-align/1df4A.t05-thin90.a2m.gz
# 1df4A.t05-thin90.a2m with 868 sequences, total weight= 8.38771 avg weight= 0.00966326 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1df4A/info/1df4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1df4A/nostruct-align/1df4A.t05-thin90.a2m.gz, have 211194 columns in 872 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hxn/nostruct-align/1hxn.t05-thin90.a2m.gz
# 1hxn.t05-thin90.a2m with 346 sequences, total weight= 277.976 avg weight= 0.803399 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30103 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hxn/info/1hxn.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hxn/nostruct-align/1hxn.t05-thin90.a2m.gz, have 211404 columns in 873 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f8mA/nostruct-align/1f8mA.t05-thin90.a2m.gz
# 1f8mA.t05-thin90.a2m with 345 sequences, total weight= 92.3839 avg weight= 0.267779 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3004 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f8mA/info/1f8mA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f8mA/nostruct-align/1f8mA.t05-thin90.a2m.gz, have 211831 columns in 874 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1earA/nostruct-align/1earA.t05-thin90.a2m.gz
# 1earA.t05-thin90.a2m with 90 sequences, total weight= 46.0558 avg weight= 0.511731 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1earA/info/1earA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1earA/nostruct-align/1earA.t05-thin90.a2m.gz, have 211973 columns in 875 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h4rA/nostruct-align/1h4rA.t05-thin90.a2m.gz
# 1h4rA.t05-thin90.a2m with 599 sequences, total weight= 599 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08968 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h4rA/info/1h4rA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h4rA/nostruct-align/1h4rA.t05-thin90.a2m.gz, have 212267 columns in 876 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r9wA/nostruct-align/1r9wA.t05-thin90.a2m.gz
# 1r9wA.t05-thin90.a2m with 93 sequences, total weight= 11.5699 avg weight= 0.124408 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r9wA/info/1r9wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r9wA/nostruct-align/1r9wA.t05-thin90.a2m.gz, have 212405 columns in 877 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qo7A/nostruct-align/1qo7A.t05-thin90.a2m.gz
# 1qo7A.t05-thin90.a2m with 7492 sequences, total weight= 7492 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.741129 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qo7A/info/1qo7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qo7A/nostruct-align/1qo7A.t05-thin90.a2m.gz, have 212790 columns in 878 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j30A/nostruct-align/1j30A.t05-thin90.a2m.gz
# 1j30A.t05-thin90.a2m with 126 sequences, total weight= 35.8287 avg weight= 0.284354 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j30A/info/1j30A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j30A/nostruct-align/1j30A.t05-thin90.a2m.gz, have 212931 columns in 879 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nzjA/nostruct-align/1nzjA.t05-thin90.a2m.gz
# 1nzjA.t05-thin90.a2m with 1063 sequences, total weight= 1063 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14119 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nzjA/info/1nzjA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nzjA/nostruct-align/1nzjA.t05-thin90.a2m.gz, have 213204 columns in 880 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vimA/nostruct-align/1vimA.t05-thin90.a2m.gz
# 1vimA.t05-thin90.a2m with 1577 sequences, total weight= 1577 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.997044 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vimA/info/1vimA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vimA/nostruct-align/1vimA.t05-thin90.a2m.gz, have 213396 columns in 881 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oa8A/nostruct-align/1oa8A.t05-thin90.a2m.gz
# 1oa8A.t05-thin90.a2m with 28 sequences, total weight= 11.408 avg weight= 0.407427 25 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oa8A/info/1oa8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oa8A/nostruct-align/1oa8A.t05-thin90.a2m.gz, have 213524 columns in 882 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m65A/nostruct-align/1m65A.t05-thin90.a2m.gz
# 1m65A.t05-thin90.a2m with 832 sequences, total weight= 832 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.925328 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m65A/info/1m65A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m65A/nostruct-align/1m65A.t05-thin90.a2m.gz, have 213758 columns in 883 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e2kA/nostruct-align/1e2kA.t05-thin90.a2m.gz
# 1e2kA.t05-thin90.a2m with 565 sequences, total weight= 565 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07589 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e2kA/info/1e2kA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e2kA/nostruct-align/1e2kA.t05-thin90.a2m.gz, have 214066 columns in 884 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eyeA/nostruct-align/1eyeA.t05-thin90.a2m.gz
# 1eyeA.t05-thin90.a2m with 479 sequences, total weight= 82.5604 avg weight= 0.17236 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30283 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eyeA/info/1eyeA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eyeA/nostruct-align/1eyeA.t05-thin90.a2m.gz, have 214322 columns in 885 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cs6A/nostruct-align/1cs6A.t05-thin90.a2m.gz
# 1cs6A.t05-thin90.a2m with 6187 sequences, total weight= 6187 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.852616 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cs6A/info/1cs6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cs6A/nostruct-align/1cs6A.t05-thin90.a2m.gz, have 214704 columns in 886 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u7gA/nostruct-align/1u7gA.t05-thin90.a2m.gz
# 1u7gA.t05-thin90.a2m with 540 sequences, total weight= 63.7319 avg weight= 0.118022 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30078 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u7gA/info/1u7gA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1u7gA/nostruct-align/1u7gA.t05-thin90.a2m.gz, have 215087 columns in 887 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kaeA/nostruct-align/1kaeA.t05-thin90.a2m.gz
# 1kaeA.t05-thin90.a2m with 2816 sequences, total weight= 1326.92 avg weight= 0.471207 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32097 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kaeA/info/1kaeA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kaeA/nostruct-align/1kaeA.t05-thin90.a2m.gz, have 215521 columns in 888 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qftA/nostruct-align/1qftA.t05-thin90.a2m.gz
# 1qftA.t05-thin90.a2m with 73 sequences, total weight= 73 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07809 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qftA/info/1qftA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qftA/nostruct-align/1qftA.t05-thin90.a2m.gz, have 215696 columns in 889 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g8aA/nostruct-align/1g8aA.t05-thin90.a2m.gz
# 1g8aA.t05-thin90.a2m with 8033 sequences, total weight= 8033 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.720417 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g8aA/info/1g8aA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g8aA/nostruct-align/1g8aA.t05-thin90.a2m.gz, have 215923 columns in 890 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dtdB/nostruct-align/1dtdB.t05-thin90.a2m.gz
# 1dtdB.t05-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.675221 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dtdB/info/1dtdB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dtdB/nostruct-align/1dtdB.t05-thin90.a2m.gz, have 215984 columns in 891 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1inlA/nostruct-align/1inlA.t05-thin90.a2m.gz
# 1inlA.t05-thin90.a2m with 8458 sequences, total weight= 8458 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.828078 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1inlA/info/1inlA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1inlA/nostruct-align/1inlA.t05-thin90.a2m.gz, have 216269 columns in 892 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q5zA/nostruct-align/1q5zA.t05-thin90.a2m.gz
# 1q5zA.t05-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.588933 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q5zA/info/1q5zA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q5zA/nostruct-align/1q5zA.t05-thin90.a2m.gz, have 216414 columns in 893 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cxqA/nostruct-align/1cxqA.t05-thin90.a2m.gz
# 1cxqA.t05-thin90.a2m with 2176 sequences, total weight= 2176 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02216 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cxqA/info/1cxqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cxqA/nostruct-align/1cxqA.t05-thin90.a2m.gz, have 216557 columns in 894 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1itxA/nostruct-align/1itxA.t05-thin90.a2m.gz
# 1itxA.t05-thin90.a2m with 910 sequences, total weight= 910 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08024 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1itxA/info/1itxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1itxA/nostruct-align/1itxA.t05-thin90.a2m.gz, have 216976 columns in 895 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o97D/nostruct-align/1o97D.t05-thin90.a2m.gz
# 1o97D.t05-thin90.a2m with 488 sequences, total weight= 61.1035 avg weight= 0.125212 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30066 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o97D/info/1o97D.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o97D/nostruct-align/1o97D.t05-thin90.a2m.gz, have 217291 columns in 896 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/4e/4eugA/nostruct-align/4eugA.t05-thin90.a2m.gz
# 4eugA.t05-thin90.a2m with 263 sequences, total weight= 20.7441 avg weight= 0.078875 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/4e/4eugA/info/4eugA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/4e/4eugA/nostruct-align/4eugA.t05-thin90.a2m.gz, have 217516 columns in 897 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pfbA/nostruct-align/1pfbA.t05-thin90.a2m.gz
# 1pfbA.t05-thin90.a2m with 206 sequences, total weight= 26.8326 avg weight= 0.130256 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pfbA/info/1pfbA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pfbA/nostruct-align/1pfbA.t05-thin90.a2m.gz, have 217571 columns in 898 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rjdA/nostruct-align/1rjdA.t05-thin90.a2m.gz
# 1rjdA.t05-thin90.a2m with 322 sequences, total weight= 322 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00615 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rjdA/info/1rjdA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rjdA/nostruct-align/1rjdA.t05-thin90.a2m.gz, have 217899 columns in 899 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhwA/nostruct-align/1vhwA.t05-thin90.a2m.gz
# 1vhwA.t05-thin90.a2m with 863 sequences, total weight= 863 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.99021 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhwA/info/1vhwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vhwA/nostruct-align/1vhwA.t05-thin90.a2m.gz, have 218136 columns in 900 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pwbA/nostruct-align/1pwbA.t05-thin90.a2m.gz
# 1pwbA.t05-thin90.a2m with 2085 sequences, total weight= 97.797 avg weight= 0.046905 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30087 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pwbA/info/1pwbA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pwbA/nostruct-align/1pwbA.t05-thin90.a2m.gz, have 218287 columns in 901 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1irdB/nostruct-align/1irdB.t05-thin90.a2m.gz
# 1irdB.t05-thin90.a2m with 742 sequences, total weight= 126.592 avg weight= 0.170609 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31047 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1irdB/info/1irdB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1irdB/nostruct-align/1irdB.t05-thin90.a2m.gz, have 218433 columns in 902 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rylA/nostruct-align/1rylA.t05-thin90.a2m.gz
# 1rylA.t05-thin90.a2m with 10 sequences, total weight= 10 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17921 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rylA/info/1rylA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rylA/nostruct-align/1rylA.t05-thin90.a2m.gz, have 218590 columns in 903 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sx5A/nostruct-align/1sx5A.t05-thin90.a2m.gz
# 1sx5A.t05-thin90.a2m with 3 sequences, total weight= 3 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17627 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sx5A/info/1sx5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sx5A/nostruct-align/1sx5A.t05-thin90.a2m.gz, have 218834 columns in 904 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ut1A/nostruct-align/1ut1A.t05-thin90.a2m.gz
# 1ut1A.t05-thin90.a2m with 9 sequences, total weight= 5.51544 avg weight= 0.612826 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ut1A/info/1ut1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ut1A/nostruct-align/1ut1A.t05-thin90.a2m.gz, have 218974 columns in 905 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mr7A/nostruct-align/1mr7A.t05-thin90.a2m.gz
# 1mr7A.t05-thin90.a2m with 2126 sequences, total weight= 2126 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.972491 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mr7A/info/1mr7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mr7A/nostruct-align/1mr7A.t05-thin90.a2m.gz, have 219177 columns in 906 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1twdA/nostruct-align/1twdA.t05-thin90.a2m.gz
# 1twdA.t05-thin90.a2m with 88 sequences, total weight= 25.1883 avg weight= 0.28623 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1twdA/info/1twdA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1twdA/nostruct-align/1twdA.t05-thin90.a2m.gz, have 219411 columns in 907 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2i/2igd/nostruct-align/2igd.t05-thin90.a2m.gz
# 2igd.t05-thin90.a2m with 14 sequences, total weight= 3.33906 avg weight= 0.238504 13 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2i/2igd/info/2igd.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2i/2igd/nostruct-align/2igd.t05-thin90.a2m.gz, have 219472 columns in 908 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lc0A/nostruct-align/1lc0A.t05-thin90.a2m.gz
# 1lc0A.t05-thin90.a2m with 2811 sequences, total weight= 2811 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.859316 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lc0A/info/1lc0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lc0A/nostruct-align/1lc0A.t05-thin90.a2m.gz, have 219762 columns in 909 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1ka1A/nostruct-align/1ka1A.t05-thin90.a2m.gz
# 1ka1A.t05-thin90.a2m with 754 sequences, total weight= 754 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09131 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1ka1A/info/1ka1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1ka1A/nostruct-align/1ka1A.t05-thin90.a2m.gz, have 220116 columns in 910 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ejdA/nostruct-align/1ejdA.t05-thin90.a2m.gz
# 1ejdA.t05-thin90.a2m with 597 sequences, total weight= 101.657 avg weight= 0.170279 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30491 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ejdA/info/1ejdA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ejdA/nostruct-align/1ejdA.t05-thin90.a2m.gz, have 220535 columns in 911 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r89A/nostruct-align/1r89A.t05-thin90.a2m.gz
# 1r89A.t05-thin90.a2m with 503 sequences, total weight= 503 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.952284 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r89A/info/1r89A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r89A/nostruct-align/1r89A.t05-thin90.a2m.gz, have 220972 columns in 912 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pq1A/nostruct-align/1pq1A.t05-thin90.a2m.gz
# 1pq1A.t05-thin90.a2m with 153 sequences, total weight= 153 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.111 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pq1A/info/1pq1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pq1A/nostruct-align/1pq1A.t05-thin90.a2m.gz, have 221119 columns in 913 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ursA/nostruct-align/1ursA.t05-thin90.a2m.gz
# 1ursA.t05-thin90.a2m with 1904 sequences, total weight= 1904 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.855765 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ursA/info/1ursA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ursA/nostruct-align/1ursA.t05-thin90.a2m.gz, have 221485 columns in 914 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q35A/nostruct-align/1q35A.t05-thin90.a2m.gz
# 1q35A.t05-thin90.a2m with 2091 sequences, total weight= 2091 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.840633 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q35A/info/1q35A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q35A/nostruct-align/1q35A.t05-thin90.a2m.gz, have 221802 columns in 915 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1psrA/nostruct-align/1psrA.t05-thin90.a2m.gz
# 1psrA.t05-thin90.a2m with 190 sequences, total weight= 63.7642 avg weight= 0.335601 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30061 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1psrA/info/1psrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1psrA/nostruct-align/1psrA.t05-thin90.a2m.gz, have 221902 columns in 916 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1md6A/nostruct-align/1md6A.t05-thin90.a2m.gz
# 1md6A.t05-thin90.a2m with 118 sequences, total weight= 41.2745 avg weight= 0.349784 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1md6A/info/1md6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1md6A/nostruct-align/1md6A.t05-thin90.a2m.gz, have 222056 columns in 917 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1po5A/nostruct-align/1po5A.t05-thin90.a2m.gz
# 1po5A.t05-thin90.a2m with 4528 sequences, total weight= 4528 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01901 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1po5A/info/1po5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1po5A/nostruct-align/1po5A.t05-thin90.a2m.gz, have 222521 columns in 918 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kzfA/nostruct-align/1kzfA.t05-thin90.a2m.gz
# 1kzfA.t05-thin90.a2m with 245 sequences, total weight= 245 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05825 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kzfA/info/1kzfA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kzfA/nostruct-align/1kzfA.t05-thin90.a2m.gz, have 222719 columns in 919 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhh/nostruct-align/1vhh.t05-thin90.a2m.gz
# 1vhh.t05-thin90.a2m with 57 sequences, total weight= 6.09033 avg weight= 0.106848 19 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhh/info/1vhh.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vhh/nostruct-align/1vhh.t05-thin90.a2m.gz, have 222876 columns in 920 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g2bA/nostruct-align/1g2bA.t05-thin90.a2m.gz
# 1g2bA.t05-thin90.a2m with 164 sequences, total weight= 42.7101 avg weight= 0.260427 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30092 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g2bA/info/1g2bA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g2bA/nostruct-align/1g2bA.t05-thin90.a2m.gz, have 222938 columns in 921 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pwgA/nostruct-align/1pwgA.t05-thin90.a2m.gz
# 1pwgA.t05-thin90.a2m with 864 sequences, total weight= 864 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.984341 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pwgA/info/1pwgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pwgA/nostruct-align/1pwgA.t05-thin90.a2m.gz, have 223283 columns in 922 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jx6A/nostruct-align/1jx6A.t05-thin90.a2m.gz
# 1jx6A.t05-thin90.a2m with 2234 sequences, total weight= 2234 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.924266 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jx6A/info/1jx6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jx6A/nostruct-align/1jx6A.t05-thin90.a2m.gz, have 223621 columns in 923 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tqgA/nostruct-align/1tqgA.t05-thin90.a2m.gz
# 1tqgA.t05-thin90.a2m with 317 sequences, total weight= 283.643 avg weight= 0.894773 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30143 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tqgA/info/1tqgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tqgA/nostruct-align/1tqgA.t05-thin90.a2m.gz, have 223726 columns in 924 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rvkA/nostruct-align/1rvkA.t05-thin90.a2m.gz
# 1rvkA.t05-thin90.a2m with 1090 sequences, total weight= 1090 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16725 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rvkA/info/1rvkA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rvkA/nostruct-align/1rvkA.t05-thin90.a2m.gz, have 224107 columns in 925 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f5vA/nostruct-align/1f5vA.t05-thin90.a2m.gz
# 1f5vA.t05-thin90.a2m with 868 sequences, total weight= 868 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12416 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f5vA/info/1f5vA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f5vA/nostruct-align/1f5vA.t05-thin90.a2m.gz, have 224347 columns in 926 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eb6A/nostruct-align/1eb6A.t05-thin90.a2m.gz
# 1eb6A.t05-thin90.a2m with 50 sequences, total weight= 44.1452 avg weight= 0.882903 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eb6A/info/1eb6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eb6A/nostruct-align/1eb6A.t05-thin90.a2m.gz, have 224524 columns in 927 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fcqA/nostruct-align/1fcqA.t05-thin90.a2m.gz
# 1fcqA.t05-thin90.a2m with 80 sequences, total weight= 14.8911 avg weight= 0.186139 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fcqA/info/1fcqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fcqA/nostruct-align/1fcqA.t05-thin90.a2m.gz, have 224838 columns in 928 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ifc/nostruct-align/1ifc.t05-thin90.a2m.gz
# 1ifc.t05-thin90.a2m with 281 sequences, total weight= 53.6494 avg weight= 0.190923 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ifc/info/1ifc.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ifc/nostruct-align/1ifc.t05-thin90.a2m.gz, have 224969 columns in 929 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lxjA/nostruct-align/1lxjA.t05-thin90.a2m.gz
# 1lxjA.t05-thin90.a2m with 98 sequences, total weight= 34.5857 avg weight= 0.352915 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lxjA/info/1lxjA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lxjA/nostruct-align/1lxjA.t05-thin90.a2m.gz, have 225073 columns in 930 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54C/nostruct-align/1v54C.t05-thin90.a2m.gz
# 1v54C.t05-thin90.a2m with 873 sequences, total weight= 68.2452 avg weight= 0.0781732 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30093 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54C/info/1v54C.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v54C/nostruct-align/1v54C.t05-thin90.a2m.gz, have 225332 columns in 931 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pbyB/nostruct-align/1pbyB.t05-thin90.a2m.gz
# 1pbyB.t05-thin90.a2m with 5933 sequences, total weight= 5933 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.817324 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pbyB/info/1pbyB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pbyB/nostruct-align/1pbyB.t05-thin90.a2m.gz, have 225669 columns in 932 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b3aA/nostruct-align/1b3aA.t05-thin90.a2m.gz
# 1b3aA.t05-thin90.a2m with 317 sequences, total weight= 83.1471 avg weight= 0.262294 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30371 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b3aA/info/1b3aA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1b3aA/nostruct-align/1b3aA.t05-thin90.a2m.gz, have 225736 columns in 933 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vl2A/nostruct-align/1vl2A.t05-thin90.a2m.gz
# 1vl2A.t05-thin90.a2m with 1491 sequences, total weight= 1491 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19322 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vl2A/info/1vl2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vl2A/nostruct-align/1vl2A.t05-thin90.a2m.gz, have 226134 columns in 934 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pb7A/nostruct-align/1pb7A.t05-thin90.a2m.gz
# 1pb7A.t05-thin90.a2m with 1870 sequences, total weight= 1870 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.966701 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pb7A/info/1pb7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pb7A/nostruct-align/1pb7A.t05-thin90.a2m.gz, have 226415 columns in 935 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dqzA/nostruct-align/1dqzA.t05-thin90.a2m.gz
# 1dqzA.t05-thin90.a2m with 9364 sequences, total weight= 9364 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.686443 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dqzA/info/1dqzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dqzA/nostruct-align/1dqzA.t05-thin90.a2m.gz, have 226695 columns in 936 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lyvA/nostruct-align/1lyvA.t05-thin90.a2m.gz
# 1lyvA.t05-thin90.a2m with 1035 sequences, total weight= 1035 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21805 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lyvA/info/1lyvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lyvA/nostruct-align/1lyvA.t05-thin90.a2m.gz, have 226978 columns in 937 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lb3A/nostruct-align/1lb3A.t05-thin90.a2m.gz
# 1lb3A.t05-thin90.a2m with 504 sequences, total weight= 504 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29351 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lb3A/info/1lb3A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lb3A/nostruct-align/1lb3A.t05-thin90.a2m.gz, have 227145 columns in 938 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b8zA/nostruct-align/1b8zA.t05-thin90.a2m.gz
# 1b8zA.t05-thin90.a2m with 377 sequences, total weight= 15.4057 avg weight= 0.0408638 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b8zA/info/1b8zA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1b8zA/nostruct-align/1b8zA.t05-thin90.a2m.gz, have 227212 columns in 939 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rkuA/nostruct-align/1rkuA.t05-thin90.a2m.gz
# 1rkuA.t05-thin90.a2m with 5246 sequences, total weight= 5246 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.98433 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rkuA/info/1rkuA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rkuA/nostruct-align/1rkuA.t05-thin90.a2m.gz, have 227418 columns in 940 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vjuA/nostruct-align/1vjuA.t05-thin90.a2m.gz
# 1vjuA.t05-thin90.a2m with 152 sequences, total weight= 9.48746 avg weight= 0.0624175 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vjuA/info/1vjuA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vjuA/nostruct-align/1vjuA.t05-thin90.a2m.gz, have 227709 columns in 941 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ogwA/nostruct-align/1ogwA.t05-thin90.a2m.gz
# 1ogwA.t05-thin90.a2m with 391 sequences, total weight= 63.4781 avg weight= 0.162348 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30084 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ogwA/info/1ogwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ogwA/nostruct-align/1ogwA.t05-thin90.a2m.gz, have 227785 columns in 942 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r1tA/nostruct-align/1r1tA.t05-thin90.a2m.gz
# 1r1tA.t05-thin90.a2m with 1199 sequences, total weight= 1199 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18195 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r1tA/info/1r1tA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r1tA/nostruct-align/1r1tA.t05-thin90.a2m.gz, have 227883 columns in 943 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nnhA/nostruct-align/1nnhA.t05-thin90.a2m.gz
# 1nnhA.t05-thin90.a2m with 1269 sequences, total weight= 1269 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19228 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nnhA/info/1nnhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nnhA/nostruct-align/1nnhA.t05-thin90.a2m.gz, have 228176 columns in 944 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uteA/nostruct-align/1uteA.t05-thin90.a2m.gz
# 1uteA.t05-thin90.a2m with 2766 sequences, total weight= 2766 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.668653 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uteA/info/1uteA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uteA/nostruct-align/1uteA.t05-thin90.a2m.gz, have 228478 columns in 945 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1ks8A/nostruct-align/1ks8A.t05-thin90.a2m.gz
# 1ks8A.t05-thin90.a2m with 267 sequences, total weight= 73.6305 avg weight= 0.27577 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30073 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1ks8A/info/1ks8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1ks8A/nostruct-align/1ks8A.t05-thin90.a2m.gz, have 228911 columns in 946 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vkiA/nostruct-align/1vkiA.t05-thin90.a2m.gz
# 1vkiA.t05-thin90.a2m with 379 sequences, total weight= 379 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21973 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vkiA/info/1vkiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vkiA/nostruct-align/1vkiA.t05-thin90.a2m.gz, have 229076 columns in 947 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ou8A/nostruct-align/1ou8A.t05-thin90.a2m.gz
# 1ou8A.t05-thin90.a2m with 55 sequences, total weight= 7.84847 avg weight= 0.142699 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ou8A/info/1ou8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ou8A/nostruct-align/1ou8A.t05-thin90.a2m.gz, have 229182 columns in 948 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1ssxA/nostruct-align/1ssxA.t05-thin90.a2m.gz
# 1ssxA.t05-thin90.a2m with 3492 sequences, total weight= 3492 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21946 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1ssxA/info/1ssxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1ssxA/nostruct-align/1ssxA.t05-thin90.a2m.gz, have 229380 columns in 949 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j6oA/nostruct-align/1j6oA.t05-thin90.a2m.gz
# 1j6oA.t05-thin90.a2m with 702 sequences, total weight= 702 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09994 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j6oA/info/1j6oA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j6oA/nostruct-align/1j6oA.t05-thin90.a2m.gz, have 229640 columns in 950 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fp2A/nostruct-align/1fp2A.t05-thin90.a2m.gz
# 1fp2A.t05-thin90.a2m with 6935 sequences, total weight= 6935 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.696788 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fp2A/info/1fp2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fp2A/nostruct-align/1fp2A.t05-thin90.a2m.gz, have 229985 columns in 951 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h4aX/nostruct-align/1h4aX.t05-thin90.a2m.gz
# 1h4aX.t05-thin90.a2m with 277 sequences, total weight= 47.314 avg weight= 0.170809 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h4aX/info/1h4aX.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h4aX/nostruct-align/1h4aX.t05-thin90.a2m.gz, have 230158 columns in 952 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oywA/nostruct-align/1oywA.t05-thin90.a2m.gz
# 1oywA.t05-thin90.a2m with 6953 sequences, total weight= 6953 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.913218 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oywA/info/1oywA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oywA/nostruct-align/1oywA.t05-thin90.a2m.gz, have 230674 columns in 953 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mpgA/nostruct-align/1mpgA.t05-thin90.a2m.gz
# 1mpgA.t05-thin90.a2m with 842 sequences, total weight= 842 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04111 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mpgA/info/1mpgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mpgA/nostruct-align/1mpgA.t05-thin90.a2m.gz, have 230956 columns in 954 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qwgA/nostruct-align/1qwgA.t05-thin90.a2m.gz
# 1qwgA.t05-thin90.a2m with 28 sequences, total weight= 14.8188 avg weight= 0.529244 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qwgA/info/1qwgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qwgA/nostruct-align/1qwgA.t05-thin90.a2m.gz, have 231207 columns in 955 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v9fA/nostruct-align/1v9fA.t05-thin90.a2m.gz
# 1v9fA.t05-thin90.a2m with 1271 sequences, total weight= 1271 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1918 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v9fA/info/1v9fA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v9fA/nostruct-align/1v9fA.t05-thin90.a2m.gz, have 231457 columns in 956 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f7lA/nostruct-align/1f7lA.t05-thin90.a2m.gz
# 1f7lA.t05-thin90.a2m with 340 sequences, total weight= 340 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23332 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f7lA/info/1f7lA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f7lA/nostruct-align/1f7lA.t05-thin90.a2m.gz, have 231575 columns in 957 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ey4A/nostruct-align/1ey4A.t05-thin90.a2m.gz
# 1ey4A.t05-thin90.a2m with 443 sequences, total weight= 443 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15065 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ey4A/info/1ey4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ey4A/nostruct-align/1ey4A.t05-thin90.a2m.gz, have 231711 columns in 958 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1os6A/nostruct-align/1os6A.t05-thin90.a2m.gz
# 1os6A.t05-thin90.a2m with 60 sequences, total weight= 37.8701 avg weight= 0.631168 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1os6A/info/1os6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1os6A/nostruct-align/1os6A.t05-thin90.a2m.gz, have 231782 columns in 959 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gvzA/nostruct-align/1gvzA.t05-thin90.a2m.gz
# 1gvzA.t05-thin90.a2m with 2929 sequences, total weight= 2929 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28737 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gvzA/info/1gvzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gvzA/nostruct-align/1gvzA.t05-thin90.a2m.gz, have 232019 columns in 960 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i1wA/nostruct-align/1i1wA.t05-thin90.a2m.gz
# 1i1wA.t05-thin90.a2m with 365 sequences, total weight= 365 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09205 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i1wA/info/1i1wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i1wA/nostruct-align/1i1wA.t05-thin90.a2m.gz, have 232322 columns in 961 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1ten/nostruct-align/1ten.t05-thin90.a2m.gz
# 1ten.t05-thin90.a2m with 4161 sequences, total weight= 4161 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09268 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1ten/info/1ten.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1ten/nostruct-align/1ten.t05-thin90.a2m.gz, have 232411 columns in 962 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gvfA/nostruct-align/1gvfA.t05-thin90.a2m.gz
# 1gvfA.t05-thin90.a2m with 298 sequences, total weight= 26.3594 avg weight= 0.0884542 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gvfA/info/1gvfA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gvfA/nostruct-align/1gvfA.t05-thin90.a2m.gz, have 232684 columns in 963 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mh1/nostruct-align/1mh1.t05-thin90.a2m.gz
# 1mh1.t05-thin90.a2m with 4062 sequences, total weight= 4062 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06847 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mh1/info/1mh1.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mh1/nostruct-align/1mh1.t05-thin90.a2m.gz, have 232867 columns in 964 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gtkA/nostruct-align/1gtkA.t05-thin90.a2m.gz
# 1gtkA.t05-thin90.a2m with 287 sequences, total weight= 22.0306 avg weight= 0.0767615 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gtkA/info/1gtkA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gtkA/nostruct-align/1gtkA.t05-thin90.a2m.gz, have 233161 columns in 965 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pvmA/nostruct-align/1pvmA.t05-thin90.a2m.gz
# 1pvmA.t05-thin90.a2m with 2798 sequences, total weight= 2798 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22527 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pvmA/info/1pvmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pvmA/nostruct-align/1pvmA.t05-thin90.a2m.gz, have 233339 columns in 966 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hbnA/nostruct-align/1hbnA.t05-thin90.a2m.gz
# 1hbnA.t05-thin90.a2m with 54 sequences, total weight= 5.40939 avg weight= 0.100174 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hbnA/info/1hbnA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hbnA/nostruct-align/1hbnA.t05-thin90.a2m.gz, have 233886 columns in 967 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1deuA/nostruct-align/1deuA.t05-thin90.a2m.gz
# 1deuA.t05-thin90.a2m with 1356 sequences, total weight= 1356 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24569 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1deuA/info/1deuA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1deuA/nostruct-align/1deuA.t05-thin90.a2m.gz, have 234161 columns in 968 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i9zA/nostruct-align/1i9zA.t05-thin90.a2m.gz
# 1i9zA.t05-thin90.a2m with 981 sequences, total weight= 981 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.927001 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i9zA/info/1i9zA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i9zA/nostruct-align/1i9zA.t05-thin90.a2m.gz, have 234497 columns in 969 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eexB/nostruct-align/1eexB.t05-thin90.a2m.gz
# 1eexB.t05-thin90.a2m with 21 sequences, total weight= 9.58532 avg weight= 0.456444 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eexB/info/1eexB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eexB/nostruct-align/1eexB.t05-thin90.a2m.gz, have 234675 columns in 970 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h16A/nostruct-align/1h16A.t05-thin90.a2m.gz
# 1h16A.t05-thin90.a2m with 161 sequences, total weight= 90.955 avg weight= 0.564938 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h16A/info/1h16A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h16A/nostruct-align/1h16A.t05-thin90.a2m.gz, have 235434 columns in 971 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m0kA/nostruct-align/1m0kA.t05-thin90.a2m.gz
# 1m0kA.t05-thin90.a2m with 111 sequences, total weight= 49.1822 avg weight= 0.443083 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m0kA/info/1m0kA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m0kA/nostruct-align/1m0kA.t05-thin90.a2m.gz, have 235656 columns in 972 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wkqA/nostruct-align/1wkqA.t05-thin90.a2m.gz
# 1wkqA.t05-thin90.a2m with 972 sequences, total weight= 972 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15708 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wkqA/info/1wkqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wkqA/nostruct-align/1wkqA.t05-thin90.a2m.gz, have 235814 columns in 973 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eexG/nostruct-align/1eexG.t05-thin90.a2m.gz
# 1eexG.t05-thin90.a2m with 13 sequences, total weight= 3.87324 avg weight= 0.297942 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eexG/info/1eexG.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eexG/nostruct-align/1eexG.t05-thin90.a2m.gz, have 235951 columns in 974 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhtA/nostruct-align/1vhtA.t05-thin90.a2m.gz
# 1vhtA.t05-thin90.a2m with 3695 sequences, total weight= 3695 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.814982 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhtA/info/1vhtA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vhtA/nostruct-align/1vhtA.t05-thin90.a2m.gz, have 236159 columns in 975 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nrzA/nostruct-align/1nrzA.t05-thin90.a2m.gz
# 1nrzA.t05-thin90.a2m with 121 sequences, total weight= 25.7625 avg weight= 0.212913 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nrzA/info/1nrzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nrzA/nostruct-align/1nrzA.t05-thin90.a2m.gz, have 236322 columns in 976 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m6pA/nostruct-align/1m6pA.t05-thin90.a2m.gz
# 1m6pA.t05-thin90.a2m with 326 sequences, total weight= 326 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27672 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m6pA/info/1m6pA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m6pA/nostruct-align/1m6pA.t05-thin90.a2m.gz, have 236468 columns in 977 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kfcA/nostruct-align/1kfcA.t05-thin90.a2m.gz
# 1kfcA.t05-thin90.a2m with 460 sequences, total weight= 460 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21047 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kfcA/info/1kfcA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kfcA/nostruct-align/1kfcA.t05-thin90.a2m.gz, have 236722 columns in 978 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1epxA/nostruct-align/1epxA.t05-thin90.a2m.gz
# 1epxA.t05-thin90.a2m with 267 sequences, total weight= 15.7195 avg weight= 0.0588744 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1epxA/info/1epxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1epxA/nostruct-align/1epxA.t05-thin90.a2m.gz, have 237079 columns in 979 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i2tA/nostruct-align/1i2tA.t05-thin90.a2m.gz
# 1i2tA.t05-thin90.a2m with 87 sequences, total weight= 11.0495 avg weight= 0.127006 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i2tA/info/1i2tA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i2tA/nostruct-align/1i2tA.t05-thin90.a2m.gz, have 237140 columns in 980 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nnlA/nostruct-align/1nnlA.t05-thin90.a2m.gz
# 1nnlA.t05-thin90.a2m with 4926 sequences, total weight= 4926 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.907361 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nnlA/info/1nnlA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nnlA/nostruct-align/1nnlA.t05-thin90.a2m.gz, have 237345 columns in 981 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54G/nostruct-align/1v54G.t05-thin90.a2m.gz
# 1v54G.t05-thin90.a2m with 46 sequences, total weight= 11.7878 avg weight= 0.256256 26 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54G/info/1v54G.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v54G/nostruct-align/1v54G.t05-thin90.a2m.gz, have 237429 columns in 982 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hw1A/nostruct-align/1hw1A.t05-thin90.a2m.gz
# 1hw1A.t05-thin90.a2m with 2522 sequences, total weight= 2522 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.940433 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hw1A/info/1hw1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hw1A/nostruct-align/1hw1A.t05-thin90.a2m.gz, have 237655 columns in 983 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1al3/nostruct-align/1al3.t05-thin90.a2m.gz
# 1al3.t05-thin90.a2m with 5370 sequences, total weight= 5042.22 avg weight= 0.938961 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30201 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1al3/info/1al3.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1al3/nostruct-align/1al3.t05-thin90.a2m.gz, have 237892 columns in 984 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w2yA/nostruct-align/1w2yA.t05-thin90.a2m.gz
# 1w2yA.t05-thin90.a2m with 47 sequences, total weight= 45.3759 avg weight= 0.965444 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w2yA/info/1w2yA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w2yA/nostruct-align/1w2yA.t05-thin90.a2m.gz, have 238118 columns in 985 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tx4A/nostruct-align/1tx4A.t05-thin90.a2m.gz
# 1tx4A.t05-thin90.a2m with 971 sequences, total weight= 971 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17968 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tx4A/info/1tx4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tx4A/nostruct-align/1tx4A.t05-thin90.a2m.gz, have 238314 columns in 986 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fj2A/nostruct-align/1fj2A.t05-thin90.a2m.gz
# 1fj2A.t05-thin90.a2m with 10370 sequences, total weight= 10370 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.779566 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fj2A/info/1fj2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fj2A/nostruct-align/1fj2A.t05-thin90.a2m.gz, have 238543 columns in 987 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w2wA/nostruct-align/1w2wA.t05-thin90.a2m.gz
# 1w2wA.t05-thin90.a2m with 146 sequences, total weight= 27.5791 avg weight= 0.188898 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w2wA/info/1w2wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w2wA/nostruct-align/1w2wA.t05-thin90.a2m.gz, have 238754 columns in 988 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r0mA/nostruct-align/1r0mA.t05-thin90.a2m.gz
# 1r0mA.t05-thin90.a2m with 1106 sequences, total weight= 1106 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18546 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r0mA/info/1r0mA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r0mA/nostruct-align/1r0mA.t05-thin90.a2m.gz, have 239114 columns in 989 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c4qA/nostruct-align/1c4qA.t05-thin90.a2m.gz
# 1c4qA.t05-thin90.a2m with 12 sequences, total weight= 2.93614 avg weight= 0.244678 10 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c4qA/info/1c4qA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1c4qA/nostruct-align/1c4qA.t05-thin90.a2m.gz, have 239183 columns in 990 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sxrA/nostruct-align/1sxrA.t05-thin90.a2m.gz
# 1sxrA.t05-thin90.a2m with 341 sequences, total weight= 341 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21975 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sxrA/info/1sxrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sxrA/nostruct-align/1sxrA.t05-thin90.a2m.gz, have 239356 columns in 991 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1utg/nostruct-align/1utg.t05-thin90.a2m.gz
# 1utg.t05-thin90.a2m with 14 sequences, total weight= 4.37471 avg weight= 0.312479 17 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1utg/info/1utg.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1utg/nostruct-align/1utg.t05-thin90.a2m.gz, have 239426 columns in 992 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1npk/nostruct-align/1npk.t05-thin90.a2m.gz
# 1npk.t05-thin90.a2m with 470 sequences, total weight= 65.6962 avg weight= 0.139779 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3007 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1npk/info/1npk.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1npk/nostruct-align/1npk.t05-thin90.a2m.gz, have 239576 columns in 993 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n62A/nostruct-align/1n62A.t05-thin90.a2m.gz
# 1n62A.t05-thin90.a2m with 645 sequences, total weight= 117.429 avg weight= 0.182061 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30616 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n62A/info/1n62A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n62A/nostruct-align/1n62A.t05-thin90.a2m.gz, have 239737 columns in 994 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mg4A/nostruct-align/1mg4A.t05-thin90.a2m.gz
# 1mg4A.t05-thin90.a2m with 116 sequences, total weight= 42.5174 avg weight= 0.366529 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mg4A/info/1mg4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mg4A/nostruct-align/1mg4A.t05-thin90.a2m.gz, have 239838 columns in 995 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1llfA/nostruct-align/1llfA.t05-thin90.a2m.gz
# 1llfA.t05-thin90.a2m with 1869 sequences, total weight= 1869 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03812 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1llfA/info/1llfA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1llfA/nostruct-align/1llfA.t05-thin90.a2m.gz, have 240372 columns in 996 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t1vA/nostruct-align/1t1vA.t05-thin90.a2m.gz
# 1t1vA.t05-thin90.a2m with 590 sequences, total weight= 220.215 avg weight= 0.373245 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30887 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t1vA/info/1t1vA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t1vA/nostruct-align/1t1vA.t05-thin90.a2m.gz, have 240465 columns in 997 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j0pA/nostruct-align/1j0pA.t05-thin90.a2m.gz
# 1j0pA.t05-thin90.a2m with 113 sequences, total weight= 113 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11738 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j0pA/info/1j0pA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j0pA/nostruct-align/1j0pA.t05-thin90.a2m.gz, have 240573 columns in 998 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1omrA/nostruct-align/1omrA.t05-thin90.a2m.gz
# 1omrA.t05-thin90.a2m with 2604 sequences, total weight= 2604 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.875915 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1omrA/info/1omrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1omrA/nostruct-align/1omrA.t05-thin90.a2m.gz, have 240774 columns in 999 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f60A/nostruct-align/1f60A.t05-thin90.a2m.gz
# 1f60A.t05-thin90.a2m with 2464 sequences, total weight= 944.343 avg weight= 0.383256 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32288 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f60A/info/1f60A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f60A/nostruct-align/1f60A.t05-thin90.a2m.gz, have 241214 columns in 1000 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gvp/nostruct-align/1gvp.t05-thin90.a2m.gz
# 1gvp.t05-thin90.a2m with 11 sequences, total weight= 5.9852 avg weight= 0.544109 19 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gvp/info/1gvp.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gvp/nostruct-align/1gvp.t05-thin90.a2m.gz, have 241301 columns in 1001 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1knmA/nostruct-align/1knmA.t05-thin90.a2m.gz
# 1knmA.t05-thin90.a2m with 384 sequences, total weight= 384 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09403 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1knmA/info/1knmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1knmA/nostruct-align/1knmA.t05-thin90.a2m.gz, have 241430 columns in 1002 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t2wA/nostruct-align/1t2wA.t05-thin90.a2m.gz
# 1t2wA.t05-thin90.a2m with 192 sequences, total weight= 192 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29564 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t2wA/info/1t2wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t2wA/nostruct-align/1t2wA.t05-thin90.a2m.gz, have 241575 columns in 1003 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o9gA/nostruct-align/1o9gA.t05-thin90.a2m.gz
# 1o9gA.t05-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.624727 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o9gA/info/1o9gA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o9gA/nostruct-align/1o9gA.t05-thin90.a2m.gz, have 241824 columns in 1004 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fjjA/nostruct-align/1fjjA.t05-thin90.a2m.gz
# 1fjjA.t05-thin90.a2m with 350 sequences, total weight= 350 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28072 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fjjA/info/1fjjA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fjjA/nostruct-align/1fjjA.t05-thin90.a2m.gz, have 241983 columns in 1005 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1ccwB/nostruct-align/1ccwB.t05-thin90.a2m.gz
# 1ccwB.t05-thin90.a2m with 197 sequences, total weight= 55.7209 avg weight= 0.282847 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1ccwB/info/1ccwB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1ccwB/nostruct-align/1ccwB.t05-thin90.a2m.gz, have 242466 columns in 1006 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p5dX/nostruct-align/1p5dX.t05-thin90.a2m.gz
# 1p5dX.t05-thin90.a2m with 939 sequences, total weight= 939 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27831 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p5dX/info/1p5dX.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p5dX/nostruct-align/1p5dX.t05-thin90.a2m.gz, have 242921 columns in 1007 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1josA/nostruct-align/1josA.t05-thin90.a2m.gz
# 1josA.t05-thin90.a2m with 219 sequences, total weight= 41.9723 avg weight= 0.191654 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30037 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1josA/info/1josA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1josA/nostruct-align/1josA.t05-thin90.a2m.gz, have 243021 columns in 1008 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kpf/nostruct-align/1kpf.t05-thin90.a2m.gz
# 1kpf.t05-thin90.a2m with 655 sequences, total weight= 655 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27232 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kpf/info/1kpf.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kpf/nostruct-align/1kpf.t05-thin90.a2m.gz, have 243132 columns in 1009 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eg2A/nostruct-align/1eg2A.t05-thin90.a2m.gz
# 1eg2A.t05-thin90.a2m with 607 sequences, total weight= 607 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02273 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eg2A/info/1eg2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eg2A/nostruct-align/1eg2A.t05-thin90.a2m.gz, have 243402 columns in 1010 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ucsA/nostruct-align/1ucsA.t05-thin90.a2m.gz
# 1ucsA.t05-thin90.a2m with 13 sequences, total weight= 3.0462 avg weight= 0.234323 11 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ucsA/info/1ucsA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ucsA/nostruct-align/1ucsA.t05-thin90.a2m.gz, have 243466 columns in 1011 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sdiA/nostruct-align/1sdiA.t05-thin90.a2m.gz
# 1sdiA.t05-thin90.a2m with 36 sequences, total weight= 10.3594 avg weight= 0.28776 30 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sdiA/info/1sdiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sdiA/nostruct-align/1sdiA.t05-thin90.a2m.gz, have 243679 columns in 1012 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1obdA/nostruct-align/1obdA.t05-thin90.a2m.gz
# 1obdA.t05-thin90.a2m with 271 sequences, total weight= 45.0671 avg weight= 0.166299 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1obdA/info/1obdA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1obdA/nostruct-align/1obdA.t05-thin90.a2m.gz, have 243977 columns in 1013 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rx0A/nostruct-align/1rx0A.t05-thin90.a2m.gz
# 1rx0A.t05-thin90.a2m with 2398 sequences, total weight= 2398 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15192 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rx0A/info/1rx0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rx0A/nostruct-align/1rx0A.t05-thin90.a2m.gz, have 244361 columns in 1014 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p99A/nostruct-align/1p99A.t05-thin90.a2m.gz
# 1p99A.t05-thin90.a2m with 841 sequences, total weight= 841 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03114 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p99A/info/1p99A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p99A/nostruct-align/1p99A.t05-thin90.a2m.gz, have 244616 columns in 1015 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2l/2lisA/nostruct-align/2lisA.t05-thin90.a2m.gz
# 2lisA.t05-thin90.a2m with 29 sequences, total weight= 11.163 avg weight= 0.384929 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2l/2lisA/info/2lisA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2l/2lisA/nostruct-align/2lisA.t05-thin90.a2m.gz, have 244747 columns in 1016 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nvmA/nostruct-align/1nvmA.t05-thin90.a2m.gz
# 1nvmA.t05-thin90.a2m with 856 sequences, total weight= 856 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28197 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nvmA/info/1nvmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nvmA/nostruct-align/1nvmA.t05-thin90.a2m.gz, have 245087 columns in 1017 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1egwA/nostruct-align/1egwA.t05-thin90.a2m.gz
# 1egwA.t05-thin90.a2m with 560 sequences, total weight= 15.8331 avg weight= 0.0282733 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1egwA/info/1egwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1egwA/nostruct-align/1egwA.t05-thin90.a2m.gz, have 245158 columns in 1018 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jmkC/nostruct-align/1jmkC.t05-thin90.a2m.gz
# 1jmkC.t05-thin90.a2m with 8122 sequences, total weight= 8122 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.739265 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jmkC/info/1jmkC.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jmkC/nostruct-align/1jmkC.t05-thin90.a2m.gz, have 245380 columns in 1019 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1duvG/nostruct-align/1duvG.t05-thin90.a2m.gz
# 1duvG.t05-thin90.a2m with 596 sequences, total weight= 46.592 avg weight= 0.0781744 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1duvG/info/1duvG.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1duvG/nostruct-align/1duvG.t05-thin90.a2m.gz, have 245713 columns in 1020 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rocA/nostruct-align/1rocA.t05-thin90.a2m.gz
# 1rocA.t05-thin90.a2m with 53 sequences, total weight= 10.7047 avg weight= 0.201976 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rocA/info/1rocA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rocA/nostruct-align/1rocA.t05-thin90.a2m.gz, have 245868 columns in 1021 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i71A/nostruct-align/1i71A.t05-thin90.a2m.gz
# 1i71A.t05-thin90.a2m with 355 sequences, total weight= 23.9739 avg weight= 0.0675321 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30033 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i71A/info/1i71A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i71A/nostruct-align/1i71A.t05-thin90.a2m.gz, have 245951 columns in 1022 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1umgA/nostruct-align/1umgA.t05-thin90.a2m.gz
# 1umgA.t05-thin90.a2m with 24 sequences, total weight= 3.97169 avg weight= 0.165487 19 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1umgA/info/1umgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1umgA/nostruct-align/1umgA.t05-thin90.a2m.gz, have 246310 columns in 1023 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h5uA/nostruct-align/1h5uA.t05-thin90.a2m.gz
# 1h5uA.t05-thin90.a2m with 450 sequences, total weight= 102.586 avg weight= 0.227969 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30113 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h5uA/info/1h5uA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h5uA/nostruct-align/1h5uA.t05-thin90.a2m.gz, have 247121 columns in 1024 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gkpA/nostruct-align/1gkpA.t05-thin90.a2m.gz
# 1gkpA.t05-thin90.a2m with 2223 sequences, total weight= 2223 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.915394 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gkpA/info/1gkpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gkpA/nostruct-align/1gkpA.t05-thin90.a2m.gz, have 247579 columns in 1025 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pa7A/nostruct-align/1pa7A.t05-thin90.a2m.gz
# 1pa7A.t05-thin90.a2m with 79 sequences, total weight= 17.7664 avg weight= 0.224891 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pa7A/info/1pa7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pa7A/nostruct-align/1pa7A.t05-thin90.a2m.gz, have 247709 columns in 1026 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gnlA/nostruct-align/1gnlA.t05-thin90.a2m.gz
# 1gnlA.t05-thin90.a2m with 118 sequences, total weight= 43.0835 avg weight= 0.365114 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gnlA/info/1gnlA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gnlA/nostruct-align/1gnlA.t05-thin90.a2m.gz, have 248252 columns in 1027 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bteA/nostruct-align/1bteA.t05-thin90.a2m.gz
# 1bteA.t05-thin90.a2m with 36 sequences, total weight= 29.2187 avg weight= 0.811631 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bteA/info/1bteA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bteA/nostruct-align/1bteA.t05-thin90.a2m.gz, have 248344 columns in 1028 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gu2A/nostruct-align/1gu2A.t05-thin90.a2m.gz
# 1gu2A.t05-thin90.a2m with 15 sequences, total weight= 8.52483 avg weight= 0.568322 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gu2A/info/1gu2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gu2A/nostruct-align/1gu2A.t05-thin90.a2m.gz, have 248468 columns in 1029 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l1lA/nostruct-align/1l1lA.t05-thin90.a2m.gz
# 1l1lA.t05-thin90.a2m with 488 sequences, total weight= 488 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26517 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l1lA/info/1l1lA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l1lA/nostruct-align/1l1lA.t05-thin90.a2m.gz, have 249185 columns in 1030 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e2wA/nostruct-align/1e2wA.t05-thin90.a2m.gz
# 1e2wA.t05-thin90.a2m with 51 sequences, total weight= 4.44266 avg weight= 0.087111 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e2wA/info/1e2wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e2wA/nostruct-align/1e2wA.t05-thin90.a2m.gz, have 249436 columns in 1031 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kt6A/nostruct-align/1kt6A.t05-thin90.a2m.gz
# 1kt6A.t05-thin90.a2m with 452 sequences, total weight= 452 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.967641 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kt6A/info/1kt6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kt6A/nostruct-align/1kt6A.t05-thin90.a2m.gz, have 249611 columns in 1032 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2m/2mhr/nostruct-align/2mhr.t05-thin90.a2m.gz
# 2mhr.t05-thin90.a2m with 193 sequences, total weight= 193 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24574 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2m/2mhr/info/2mhr.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2m/2mhr/nostruct-align/2mhr.t05-thin90.a2m.gz, have 249729 columns in 1033 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vjoA/nostruct-align/1vjoA.t05-thin90.a2m.gz
# 1vjoA.t05-thin90.a2m with 8380 sequences, total weight= 8380 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.822251 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vjoA/info/1vjoA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vjoA/nostruct-align/1vjoA.t05-thin90.a2m.gz, have 250106 columns in 1034 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mqvA/nostruct-align/1mqvA.t05-thin90.a2m.gz
# 1mqvA.t05-thin90.a2m with 66 sequences, total weight= 50.8726 avg weight= 0.770797 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mqvA/info/1mqvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mqvA/nostruct-align/1mqvA.t05-thin90.a2m.gz, have 250229 columns in 1035 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1io0A/nostruct-align/1io0A.t05-thin90.a2m.gz
# 1io0A.t05-thin90.a2m with 391 sequences, total weight= 391 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20522 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1io0A/info/1io0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1io0A/nostruct-align/1io0A.t05-thin90.a2m.gz, have 250395 columns in 1036 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i40A/nostruct-align/1i40A.t05-thin90.a2m.gz
# 1i40A.t05-thin90.a2m with 283 sequences, total weight= 32.4944 avg weight= 0.114821 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i40A/info/1i40A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i40A/nostruct-align/1i40A.t05-thin90.a2m.gz, have 250570 columns in 1037 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t0bA/nostruct-align/1t0bA.t05-thin90.a2m.gz
# 1t0bA.t05-thin90.a2m with 97 sequences, total weight= 97 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05675 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t0bA/info/1t0bA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t0bA/nostruct-align/1t0bA.t05-thin90.a2m.gz, have 250810 columns in 1038 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uxaA/nostruct-align/1uxaA.t05-thin90.a2m.gz
# 1uxaA.t05-thin90.a2m with 45 sequences, total weight= 17.1401 avg weight= 0.380892 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uxaA/info/1uxaA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uxaA/nostruct-align/1uxaA.t05-thin90.a2m.gz, have 250995 columns in 1039 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cjwA/nostruct-align/1cjwA.t05-thin90.a2m.gz
# 1cjwA.t05-thin90.a2m with 5965 sequences, total weight= 5965 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.73196 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cjwA/info/1cjwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cjwA/nostruct-align/1cjwA.t05-thin90.a2m.gz, have 251161 columns in 1040 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/8a/8abp/nostruct-align/8abp.t05-thin90.a2m.gz
# 8abp.t05-thin90.a2m with 1953 sequences, total weight= 1953 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.948813 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/8a/8abp/info/8abp.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/8a/8abp/nostruct-align/8abp.t05-thin90.a2m.gz, have 251466 columns in 1041 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bopA/nostruct-align/2bopA.t05-thin90.a2m.gz
# 2bopA.t05-thin90.a2m with 112 sequences, total weight= 15.5971 avg weight= 0.13926 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bopA/info/2bopA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2b/2bopA/nostruct-align/2bopA.t05-thin90.a2m.gz, have 251551 columns in 1042 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qmgA/nostruct-align/1qmgA.t05-thin90.a2m.gz
# 1qmgA.t05-thin90.a2m with 1562 sequences, total weight= 1562 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19016 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qmgA/info/1qmgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qmgA/nostruct-align/1qmgA.t05-thin90.a2m.gz, have 252065 columns in 1043 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jovA/nostruct-align/1jovA.t05-thin90.a2m.gz
# 1jovA.t05-thin90.a2m with 445 sequences, total weight= 445 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12079 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jovA/info/1jovA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jovA/nostruct-align/1jovA.t05-thin90.a2m.gz, have 252334 columns in 1044 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e85A/nostruct-align/1e85A.t05-thin90.a2m.gz
# 1e85A.t05-thin90.a2m with 73 sequences, total weight= 73 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2749 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e85A/info/1e85A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e85A/nostruct-align/1e85A.t05-thin90.a2m.gz, have 252459 columns in 1045 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hqkA/nostruct-align/1hqkA.t05-thin90.a2m.gz
# 1hqkA.t05-thin90.a2m with 256 sequences, total weight= 25.3907 avg weight= 0.0991824 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hqkA/info/1hqkA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hqkA/nostruct-align/1hqkA.t05-thin90.a2m.gz, have 252613 columns in 1046 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c75A/nostruct-align/1c75A.t05-thin90.a2m.gz
# 1c75A.t05-thin90.a2m with 743 sequences, total weight= 363.567 avg weight= 0.489322 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31484 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c75A/info/1c75A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1c75A/nostruct-align/1c75A.t05-thin90.a2m.gz, have 252684 columns in 1047 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dg6A/nostruct-align/1dg6A.t05-thin90.a2m.gz
# 1dg6A.t05-thin90.a2m with 176 sequences, total weight= 176 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28968 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dg6A/info/1dg6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dg6A/nostruct-align/1dg6A.t05-thin90.a2m.gz, have 252833 columns in 1048 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1syyA/nostruct-align/1syyA.t05-thin90.a2m.gz
# 1syyA.t05-thin90.a2m with 353 sequences, total weight= 353 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20564 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1syyA/info/1syyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1syyA/nostruct-align/1syyA.t05-thin90.a2m.gz, have 253150 columns in 1049 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vknA/nostruct-align/1vknA.t05-thin90.a2m.gz
# 1vknA.t05-thin90.a2m with 1752 sequences, total weight= 1752 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23682 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vknA/info/1vknA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vknA/nostruct-align/1vknA.t05-thin90.a2m.gz, have 253490 columns in 1050 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a62/nostruct-align/1a62.t05-thin90.a2m.gz
# 1a62.t05-thin90.a2m with 143 sequences, total weight= 12.4463 avg weight= 0.0870372 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a62/info/1a62.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a62/nostruct-align/1a62.t05-thin90.a2m.gz, have 253615 columns in 1051 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e6bA/nostruct-align/1e6bA.t05-thin90.a2m.gz
# 1e6bA.t05-thin90.a2m with 2637 sequences, total weight= 2637 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02286 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e6bA/info/1e6bA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e6bA/nostruct-align/1e6bA.t05-thin90.a2m.gz, have 253809 columns in 1052 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nzyA/nostruct-align/1nzyA.t05-thin90.a2m.gz
# 1nzyA.t05-thin90.a2m with 2105 sequences, total weight= 2105 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16656 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nzyA/info/1nzyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nzyA/nostruct-align/1nzyA.t05-thin90.a2m.gz, have 254078 columns in 1053 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r7jA/nostruct-align/1r7jA.t05-thin90.a2m.gz
# 1r7jA.t05-thin90.a2m with 29 sequences, total weight= 24.098 avg weight= 0.830966 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r7jA/info/1r7jA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r7jA/nostruct-align/1r7jA.t05-thin90.a2m.gz, have 254168 columns in 1054 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bgc/nostruct-align/1bgc.t05-thin90.a2m.gz
# 1bgc.t05-thin90.a2m with 59 sequences, total weight= 26.4178 avg weight= 0.447759 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bgc/info/1bgc.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bgc/nostruct-align/1bgc.t05-thin90.a2m.gz, have 254326 columns in 1055 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j1yA/nostruct-align/1j1yA.t05-thin90.a2m.gz
# 1j1yA.t05-thin90.a2m with 1062 sequences, total weight= 1062 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00389 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j1yA/info/1j1yA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j1yA/nostruct-align/1j1yA.t05-thin90.a2m.gz, have 254442 columns in 1056 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qxyA/nostruct-align/1qxyA.t05-thin90.a2m.gz
# 1qxyA.t05-thin90.a2m with 1276 sequences, total weight= 1276 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18688 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qxyA/info/1qxyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qxyA/nostruct-align/1qxyA.t05-thin90.a2m.gz, have 254691 columns in 1057 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oz2A/nostruct-align/1oz2A.t05-thin90.a2m.gz
# 1oz2A.t05-thin90.a2m with 129 sequences, total weight= 47.7737 avg weight= 0.370339 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oz2A/info/1oz2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oz2A/nostruct-align/1oz2A.t05-thin90.a2m.gz, have 255015 columns in 1058 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1shuX/nostruct-align/1shuX.t05-thin90.a2m.gz
# 1shuX.t05-thin90.a2m with 1976 sequences, total weight= 1976 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.955318 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1shuX/info/1shuX.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1shuX/nostruct-align/1shuX.t05-thin90.a2m.gz, have 255196 columns in 1059 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h8uA/nostruct-align/1h8uA.t05-thin90.a2m.gz
# 1h8uA.t05-thin90.a2m with 1966 sequences, total weight= 1966 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05586 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h8uA/info/1h8uA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h8uA/nostruct-align/1h8uA.t05-thin90.a2m.gz, have 255311 columns in 1060 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oc7A/nostruct-align/1oc7A.t05-thin90.a2m.gz
# 1oc7A.t05-thin90.a2m with 80 sequences, total weight= 22.8142 avg weight= 0.285177 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oc7A/info/1oc7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oc7A/nostruct-align/1oc7A.t05-thin90.a2m.gz, have 255675 columns in 1061 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ufoA/nostruct-align/1ufoA.t05-thin90.a2m.gz
# 1ufoA.t05-thin90.a2m with 10895 sequences, total weight= 10895 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.705532 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ufoA/info/1ufoA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ufoA/nostruct-align/1ufoA.t05-thin90.a2m.gz, have 255913 columns in 1062 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1ji7A/nostruct-align/1ji7A.t05-thin90.a2m.gz
# 1ji7A.t05-thin90.a2m with 95 sequences, total weight= 46.8238 avg weight= 0.492882 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1ji7A/info/1ji7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1ji7A/nostruct-align/1ji7A.t05-thin90.a2m.gz, have 255990 columns in 1063 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wkrA/nostruct-align/1wkrA.t05-thin90.a2m.gz
# 1wkrA.t05-thin90.a2m with 951 sequences, total weight= 951 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20594 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wkrA/info/1wkrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wkrA/nostruct-align/1wkrA.t05-thin90.a2m.gz, have 256330 columns in 1064 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nszA/nostruct-align/1nszA.t05-thin90.a2m.gz
# 1nszA.t05-thin90.a2m with 436 sequences, total weight= 436 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12534 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nszA/info/1nszA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nszA/nostruct-align/1nszA.t05-thin90.a2m.gz, have 256670 columns in 1065 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q74A/nostruct-align/1q74A.t05-thin90.a2m.gz
# 1q74A.t05-thin90.a2m with 308 sequences, total weight= 308 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0156 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q74A/info/1q74A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q74A/nostruct-align/1q74A.t05-thin90.a2m.gz, have 256957 columns in 1066 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dd9A/nostruct-align/1dd9A.t05-thin90.a2m.gz
# 1dd9A.t05-thin90.a2m with 481 sequences, total weight= 481 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04993 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dd9A/info/1dd9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dd9A/nostruct-align/1dd9A.t05-thin90.a2m.gz, have 257267 columns in 1067 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mml/nostruct-align/1mml.t05-thin90.a2m.gz
# 1mml.t05-thin90.a2m with 310 sequences, total weight= 4.87894 avg weight= 0.0157385 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mml/info/1mml.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mml/nostruct-align/1mml.t05-thin90.a2m.gz, have 257518 columns in 1068 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1aquA/nostruct-align/1aquA.t05-thin90.a2m.gz
# 1aquA.t05-thin90.a2m with 775 sequences, total weight= 775 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.946707 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1aquA/info/1aquA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1aquA/nostruct-align/1aquA.t05-thin90.a2m.gz, have 257799 columns in 1069 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i2kA/nostruct-align/1i2kA.t05-thin90.a2m.gz
# 1i2kA.t05-thin90.a2m with 654 sequences, total weight= 654 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2046 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i2kA/info/1i2kA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i2kA/nostruct-align/1i2kA.t05-thin90.a2m.gz, have 258068 columns in 1070 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sc3A/nostruct-align/1sc3A.t05-thin90.a2m.gz
# 1sc3A.t05-thin90.a2m with 256 sequences, total weight= 202.495 avg weight= 0.790997 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30231 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sc3A/info/1sc3A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sc3A/nostruct-align/1sc3A.t05-thin90.a2m.gz, have 258241 columns in 1071 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m9zA/nostruct-align/1m9zA.t05-thin90.a2m.gz
# 1m9zA.t05-thin90.a2m with 15 sequences, total weight= 4.57097 avg weight= 0.304732 20 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m9zA/info/1m9zA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m9zA/nostruct-align/1m9zA.t05-thin90.a2m.gz, have 258346 columns in 1072 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c1dA/nostruct-align/1c1dA.t05-thin90.a2m.gz
# 1c1dA.t05-thin90.a2m with 752 sequences, total weight= 752 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29783 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c1dA/info/1c1dA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1c1dA/nostruct-align/1c1dA.t05-thin90.a2m.gz, have 258695 columns in 1073 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vk5A/nostruct-align/1vk5A.t05-thin90.a2m.gz
# 1vk5A.t05-thin90.a2m with 3 sequences, total weight= 2.38912 avg weight= 0.796373 8 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vk5A/info/1vk5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vk5A/nostruct-align/1vk5A.t05-thin90.a2m.gz, have 258816 columns in 1074 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ie9A/nostruct-align/1ie9A.t05-thin90.a2m.gz
# 1ie9A.t05-thin90.a2m with 1182 sequences, total weight= 1182 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.907863 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ie9A/info/1ie9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ie9A/nostruct-align/1ie9A.t05-thin90.a2m.gz, have 259071 columns in 1075 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54A/nostruct-align/1v54A.t05-thin90.a2m.gz
# 1v54A.t05-thin90.a2m with 1987 sequences, total weight= 34.9377 avg weight= 0.0175831 42 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54A/info/1v54A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v54A/nostruct-align/1v54A.t05-thin90.a2m.gz, have 259585 columns in 1076 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nogA/nostruct-align/1nogA.t05-thin90.a2m.gz
# 1nogA.t05-thin90.a2m with 145 sequences, total weight= 20.1488 avg weight= 0.138957 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nogA/info/1nogA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nogA/nostruct-align/1nogA.t05-thin90.a2m.gz, have 259734 columns in 1077 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1ay7B/nostruct-align/1ay7B.t05-thin90.a2m.gz
# 1ay7B.t05-thin90.a2m with 43 sequences, total weight= 39.9159 avg weight= 0.928276 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1ay7B/info/1ay7B.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1ay7B/nostruct-align/1ay7B.t05-thin90.a2m.gz, have 259823 columns in 1078 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cruA/nostruct-align/1cruA.t05-thin90.a2m.gz
# 1cruA.t05-thin90.a2m with 1090 sequences, total weight= 1090 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.897955 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cruA/info/1cruA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cruA/nostruct-align/1cruA.t05-thin90.a2m.gz, have 260271 columns in 1079 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dc1A/nostruct-align/1dc1A.t05-thin90.a2m.gz
# 1dc1A.t05-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14377 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dc1A/info/1dc1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dc1A/nostruct-align/1dc1A.t05-thin90.a2m.gz, have 260581 columns in 1080 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kid/nostruct-align/1kid.t05-thin90.a2m.gz
# 1kid.t05-thin90.a2m with 526 sequences, total weight= 18.8774 avg weight= 0.0358886 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kid/info/1kid.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kid/nostruct-align/1kid.t05-thin90.a2m.gz, have 260774 columns in 1081 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rliA/nostruct-align/1rliA.t05-thin90.a2m.gz
# 1rliA.t05-thin90.a2m with 1316 sequences, total weight= 1316 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.965467 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rliA/info/1rliA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rliA/nostruct-align/1rliA.t05-thin90.a2m.gz, have 260930 columns in 1082 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1moq/nostruct-align/1moq.t05-thin90.a2m.gz
# 1moq.t05-thin90.a2m with 1203 sequences, total weight= 1203 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1136 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1moq/info/1moq.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1moq/nostruct-align/1moq.t05-thin90.a2m.gz, have 261296 columns in 1083 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ryqA/nostruct-align/1ryqA.t05-thin90.a2m.gz
# 1ryqA.t05-thin90.a2m with 54 sequences, total weight= 13.0291 avg weight= 0.24128 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ryqA/info/1ryqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1ryqA/nostruct-align/1ryqA.t05-thin90.a2m.gz, have 261360 columns in 1084 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fm0E/nostruct-align/1fm0E.t05-thin90.a2m.gz
# 1fm0E.t05-thin90.a2m with 204 sequences, total weight= 35.1344 avg weight= 0.172228 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30032 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fm0E/info/1fm0E.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fm0E/nostruct-align/1fm0E.t05-thin90.a2m.gz, have 261502 columns in 1085 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e7lA/nostruct-align/1e7lA.t05-thin90.a2m.gz
# 1e7lA.t05-thin90.a2m with 15 sequences, total weight= 9.65103 avg weight= 0.643402 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e7lA/info/1e7lA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e7lA/nostruct-align/1e7lA.t05-thin90.a2m.gz, have 261659 columns in 1086 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q92A/nostruct-align/1q92A.t05-thin90.a2m.gz
# 1q92A.t05-thin90.a2m with 2203 sequences, total weight= 2203 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.916747 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q92A/info/1q92A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q92A/nostruct-align/1q92A.t05-thin90.a2m.gz, have 261854 columns in 1087 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jyeA/nostruct-align/1jyeA.t05-thin90.a2m.gz
# 1jyeA.t05-thin90.a2m with 1943 sequences, total weight= 1943 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.996612 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jyeA/info/1jyeA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jyeA/nostruct-align/1jyeA.t05-thin90.a2m.gz, have 262125 columns in 1088 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lst/nostruct-align/1lst.t05-thin90.a2m.gz
# 1lst.t05-thin90.a2m with 2183 sequences, total weight= 2183 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.939582 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lst/info/1lst.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lst/nostruct-align/1lst.t05-thin90.a2m.gz, have 262363 columns in 1089 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qwoA/nostruct-align/1qwoA.t05-thin90.a2m.gz
# 1qwoA.t05-thin90.a2m with 392 sequences, total weight= 392 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.932053 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qwoA/info/1qwoA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qwoA/nostruct-align/1qwoA.t05-thin90.a2m.gz, have 262798 columns in 1090 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k1eA/nostruct-align/1k1eA.t05-thin90.a2m.gz
# 1k1eA.t05-thin90.a2m with 154 sequences, total weight= 69.3766 avg weight= 0.450497 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30034 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k1eA/info/1k1eA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k1eA/nostruct-align/1k1eA.t05-thin90.a2m.gz, have 262975 columns in 1091 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2h/2hft/nostruct-align/2hft.t05-thin90.a2m.gz
# 2hft.t05-thin90.a2m with 427 sequences, total weight= 427 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0206 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2h/2hft/info/2hft.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2h/2hft/nostruct-align/2hft.t05-thin90.a2m.gz, have 263180 columns in 1092 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/19/19hcA/nostruct-align/19hcA.t05-thin90.a2m.gz
# 19hcA.t05-thin90.a2m with 646 sequences, total weight= 646 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.834813 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/19/19hcA/info/19hcA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/19/19hcA/nostruct-align/19hcA.t05-thin90.a2m.gz, have 263472 columns in 1093 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g66A/nostruct-align/1g66A.t05-thin90.a2m.gz
# 1g66A.t05-thin90.a2m with 175 sequences, total weight= 175 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14396 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g66A/info/1g66A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g66A/nostruct-align/1g66A.t05-thin90.a2m.gz, have 263679 columns in 1094 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wmzA/nostruct-align/1wmzA.t05-thin90.a2m.gz
# 1wmzA.t05-thin90.a2m with 2126 sequences, total weight= 2126 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.996552 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wmzA/info/1wmzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wmzA/nostruct-align/1wmzA.t05-thin90.a2m.gz, have 263819 columns in 1095 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ew6A/nostruct-align/1ew6A.t05-thin90.a2m.gz
# 1ew6A.t05-thin90.a2m with 610 sequences, total weight= 610 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2379 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ew6A/info/1ew6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ew6A/nostruct-align/1ew6A.t05-thin90.a2m.gz, have 263956 columns in 1096 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h97A/nostruct-align/1h97A.t05-thin90.a2m.gz
# 1h97A.t05-thin90.a2m with 765 sequences, total weight= 765 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29217 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h97A/info/1h97A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h97A/nostruct-align/1h97A.t05-thin90.a2m.gz, have 264103 columns in 1097 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2n/2nacA/nostruct-align/2nacA.t05-thin90.a2m.gz
# 2nacA.t05-thin90.a2m with 1559 sequences, total weight= 1559 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22798 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2n/2nacA/info/2nacA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2n/2nacA/nostruct-align/2nacA.t05-thin90.a2m.gz, have 264477 columns in 1098 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i0rA/nostruct-align/1i0rA.t05-thin90.a2m.gz
# 1i0rA.t05-thin90.a2m with 531 sequences, total weight= 531 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20796 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i0rA/info/1i0rA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i0rA/nostruct-align/1i0rA.t05-thin90.a2m.gz, have 264638 columns in 1099 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nbuA/nostruct-align/1nbuA.t05-thin90.a2m.gz
# 1nbuA.t05-thin90.a2m with 247 sequences, total weight= 136.328 avg weight= 0.551936 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30408 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nbuA/info/1nbuA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nbuA/nostruct-align/1nbuA.t05-thin90.a2m.gz, have 264756 columns in 1100 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sj1A/nostruct-align/1sj1A.t05-thin90.a2m.gz
# 1sj1A.t05-thin90.a2m with 219 sequences, total weight= 76.2585 avg weight= 0.348212 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30177 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sj1A/info/1sj1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sj1A/nostruct-align/1sj1A.t05-thin90.a2m.gz, have 264822 columns in 1101 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gtvA/nostruct-align/1gtvA.t05-thin90.a2m.gz
# 1gtvA.t05-thin90.a2m with 4847 sequences, total weight= 4847 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.828761 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gtvA/info/1gtvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gtvA/nostruct-align/1gtvA.t05-thin90.a2m.gz, have 265030 columns in 1102 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nwzA/nostruct-align/1nwzA.t05-thin90.a2m.gz
# 1nwzA.t05-thin90.a2m with 9 sequences, total weight= 4.61856 avg weight= 0.513173 17 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nwzA/info/1nwzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nwzA/nostruct-align/1nwzA.t05-thin90.a2m.gz, have 265155 columns in 1103 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bqcA/nostruct-align/1bqcA.t05-thin90.a2m.gz
# 1bqcA.t05-thin90.a2m with 2218 sequences, total weight= 2218 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.815547 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bqcA/info/1bqcA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bqcA/nostruct-align/1bqcA.t05-thin90.a2m.gz, have 265457 columns in 1104 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vl1A/nostruct-align/1vl1A.t05-thin90.a2m.gz
# 1vl1A.t05-thin90.a2m with 384 sequences, total weight= 116.675 avg weight= 0.30384 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30331 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vl1A/info/1vl1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vl1A/nostruct-align/1vl1A.t05-thin90.a2m.gz, have 265675 columns in 1105 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cqmA/nostruct-align/1cqmA.t05-thin90.a2m.gz
# 1cqmA.t05-thin90.a2m with 230 sequences, total weight= 87.7839 avg weight= 0.381669 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30236 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cqmA/info/1cqmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cqmA/nostruct-align/1cqmA.t05-thin90.a2m.gz, have 265773 columns in 1106 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iktA/nostruct-align/1iktA.t05-thin90.a2m.gz
# 1iktA.t05-thin90.a2m with 150 sequences, total weight= 148.878 avg weight= 0.992523 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iktA/info/1iktA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iktA/nostruct-align/1iktA.t05-thin90.a2m.gz, have 265888 columns in 1107 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rhs/nostruct-align/1rhs.t05-thin90.a2m.gz
# 1rhs.t05-thin90.a2m with 1465 sequences, total weight= 1465 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.998913 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rhs/info/1rhs.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rhs/nostruct-align/1rhs.t05-thin90.a2m.gz, have 266181 columns in 1108 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j8rA/nostruct-align/1j8rA.t05-thin90.a2m.gz
# 1j8rA.t05-thin90.a2m with 5 sequences, total weight= 3.50232 avg weight= 0.700465 13 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j8rA/info/1j8rA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j8rA/nostruct-align/1j8rA.t05-thin90.a2m.gz, have 266377 columns in 1109 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k3xA/nostruct-align/1k3xA.t05-thin90.a2m.gz
# 1k3xA.t05-thin90.a2m with 322 sequences, total weight= 69.6238 avg weight= 0.216223 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30178 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k3xA/info/1k3xA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k3xA/nostruct-align/1k3xA.t05-thin90.a2m.gz, have 266630 columns in 1110 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iooA/nostruct-align/1iooA.t05-thin90.a2m.gz
# 1iooA.t05-thin90.a2m with 551 sequences, total weight= 343.518 avg weight= 0.623445 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30691 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iooA/info/1iooA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iooA/nostruct-align/1iooA.t05-thin90.a2m.gz, have 266826 columns in 1111 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gweA/nostruct-align/1gweA.t05-thin90.a2m.gz
# 1gweA.t05-thin90.a2m with 457 sequences, total weight= 55.3366 avg weight= 0.121087 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gweA/info/1gweA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gweA/nostruct-align/1gweA.t05-thin90.a2m.gz, have 267324 columns in 1112 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oqvA/nostruct-align/1oqvA.t05-thin90.a2m.gz
# 1oqvA.t05-thin90.a2m with 15 sequences, total weight= 5.47838 avg weight= 0.365225 19 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oqvA/info/1oqvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oqvA/nostruct-align/1oqvA.t05-thin90.a2m.gz, have 267495 columns in 1113 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jlvA/nostruct-align/1jlvA.t05-thin90.a2m.gz
# 1jlvA.t05-thin90.a2m with 2592 sequences, total weight= 2592 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02433 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jlvA/info/1jlvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jlvA/nostruct-align/1jlvA.t05-thin90.a2m.gz, have 267702 columns in 1114 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nrvA/nostruct-align/1nrvA.t05-thin90.a2m.gz
# 1nrvA.t05-thin90.a2m with 791 sequences, total weight= 617.556 avg weight= 0.780729 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30415 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nrvA/info/1nrvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nrvA/nostruct-align/1nrvA.t05-thin90.a2m.gz, have 267802 columns in 1115 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kcqA/nostruct-align/1kcqA.t05-thin90.a2m.gz
# 1kcqA.t05-thin90.a2m with 692 sequences, total weight= 692 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09757 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kcqA/info/1kcqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kcqA/nostruct-align/1kcqA.t05-thin90.a2m.gz, have 267905 columns in 1116 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w53A/nostruct-align/1w53A.t05-thin90.a2m.gz
# 1w53A.t05-thin90.a2m with 7 sequences, total weight= 4.16557 avg weight= 0.595082 15 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w53A/info/1w53A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w53A/nostruct-align/1w53A.t05-thin90.a2m.gz, have 267989 columns in 1117 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bdmA/nostruct-align/1bdmA.t05-thin90.a2m.gz
# 1bdmA.t05-thin90.a2m with 1828 sequences, total weight= 1828 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.056 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bdmA/info/1bdmA.stride-mixed.near-backbone-11
WARNING: skipping a, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bdmA/nostruct-align/1bdmA.t05-thin90.a2m.gz, have 268306 columns in 1118 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2i/2ilk/nostruct-align/2ilk.t05-thin90.a2m.gz
# 2ilk.t05-thin90.a2m with 80 sequences, total weight= 40.9599 avg weight= 0.511999 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2i/2ilk/info/2ilk.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2i/2ilk/nostruct-align/2ilk.t05-thin90.a2m.gz, have 268461 columns in 1119 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h2eA/nostruct-align/1h2eA.t05-thin90.a2m.gz
# 1h2eA.t05-thin90.a2m with 1368 sequences, total weight= 1368 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05532 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h2eA/info/1h2eA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h2eA/nostruct-align/1h2eA.t05-thin90.a2m.gz, have 268668 columns in 1120 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uzbA/nostruct-align/1uzbA.t05-thin90.a2m.gz
# 1uzbA.t05-thin90.a2m with 3057 sequences, total weight= 3057 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27751 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uzbA/info/1uzbA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uzbA/nostruct-align/1uzbA.t05-thin90.a2m.gz, have 269184 columns in 1121 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w2fA/nostruct-align/1w2fA.t05-thin90.a2m.gz
# 1w2fA.t05-thin90.a2m with 164 sequences, total weight= 164 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29012 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w2fA/info/1w2fA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w2fA/nostruct-align/1w2fA.t05-thin90.a2m.gz, have 269460 columns in 1122 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1isuA/nostruct-align/1isuA.t05-thin90.a2m.gz
# 1isuA.t05-thin90.a2m with 31 sequences, total weight= 11.5196 avg weight= 0.371601 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1isuA/info/1isuA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1isuA/nostruct-align/1isuA.t05-thin90.a2m.gz, have 269522 columns in 1123 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iab/nostruct-align/1iab.t05-thin90.a2m.gz
# 1iab.t05-thin90.a2m with 410 sequences, total weight= 280.65 avg weight= 0.684513 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30414 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iab/info/1iab.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iab/nostruct-align/1iab.t05-thin90.a2m.gz, have 269722 columns in 1124 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qusA/nostruct-align/1qusA.t05-thin90.a2m.gz
# 1qusA.t05-thin90.a2m with 217 sequences, total weight= 145.948 avg weight= 0.67257 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30125 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qusA/info/1qusA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qusA/nostruct-align/1qusA.t05-thin90.a2m.gz, have 270034 columns in 1125 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mc2A/nostruct-align/1mc2A.t05-thin90.a2m.gz
# 1mc2A.t05-thin90.a2m with 308 sequences, total weight= 25.0934 avg weight= 0.0814721 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mc2A/info/1mc2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mc2A/nostruct-align/1mc2A.t05-thin90.a2m.gz, have 270156 columns in 1126 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qtwA/nostruct-align/1qtwA.t05-thin90.a2m.gz
# 1qtwA.t05-thin90.a2m with 960 sequences, total weight= 960 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.91592 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qtwA/info/1qtwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qtwA/nostruct-align/1qtwA.t05-thin90.a2m.gz, have 270441 columns in 1127 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vsrA/nostruct-align/1vsrA.t05-thin90.a2m.gz
# 1vsrA.t05-thin90.a2m with 44 sequences, total weight= 13.4641 avg weight= 0.306003 34 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vsrA/info/1vsrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vsrA/nostruct-align/1vsrA.t05-thin90.a2m.gz, have 270575 columns in 1128 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1na3A/nostruct-align/1na3A.t05-thin90.a2m.gz
# 1na3A.t05-thin90.a2m with 6519 sequences, total weight= 6519 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.948005 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1na3A/info/1na3A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1na3A/nostruct-align/1na3A.t05-thin90.a2m.gz, have 270661 columns in 1129 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lo7A/nostruct-align/1lo7A.t05-thin90.a2m.gz
# 1lo7A.t05-thin90.a2m with 893 sequences, total weight= 893 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.985353 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lo7A/nostruct-align/1lo7A.t05-thin90.a2m.gz, have 270801 columns in 1130 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1flmA/nostruct-align/1flmA.t05-thin90.a2m.gz
# 1flmA.t05-thin90.a2m with 47 sequences, total weight= 38.7011 avg weight= 0.823429 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1flmA/info/1flmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1flmA/nostruct-align/1flmA.t05-thin90.a2m.gz, have 270923 columns in 1131 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lb6A/nostruct-align/1lb6A.t05-thin90.a2m.gz
# 1lb6A.t05-thin90.a2m with 147 sequences, total weight= 110.316 avg weight= 0.750448 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30083 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lb6A/info/1lb6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lb6A/nostruct-align/1lb6A.t05-thin90.a2m.gz, have 271078 columns in 1132 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gci/nostruct-align/1gci.t05-thin90.a2m.gz
# 1gci.t05-thin90.a2m with 1358 sequences, total weight= 1358 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22194 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gci/info/1gci.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gci/nostruct-align/1gci.t05-thin90.a2m.gz, have 271347 columns in 1133 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1juvA/nostruct-align/1juvA.t05-thin90.a2m.gz
# 1juvA.t05-thin90.a2m with 409 sequences, total weight= 409 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25423 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1juvA/info/1juvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1juvA/nostruct-align/1juvA.t05-thin90.a2m.gz, have 271540 columns in 1134 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d1qA/nostruct-align/1d1qA.t05-thin90.a2m.gz
# 1d1qA.t05-thin90.a2m with 523 sequences, total weight= 483.436 avg weight= 0.924352 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30138 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d1qA/info/1d1qA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d1qA/nostruct-align/1d1qA.t05-thin90.a2m.gz, have 271699 columns in 1135 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1unqA/nostruct-align/1unqA.t05-thin90.a2m.gz
# 1unqA.t05-thin90.a2m with 1706 sequences, total weight= 1706 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.902305 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1unqA/info/1unqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1unqA/nostruct-align/1unqA.t05-thin90.a2m.gz, have 271816 columns in 1136 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g4yB/nostruct-align/1g4yB.t05-thin90.a2m.gz
# 1g4yB.t05-thin90.a2m with 26 sequences, total weight= 5.8788 avg weight= 0.226108 19 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g4yB/info/1g4yB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g4yB/nostruct-align/1g4yB.t05-thin90.a2m.gz, have 271897 columns in 1137 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m1nA/nostruct-align/1m1nA.t05-thin90.a2m.gz
# 1m1nA.t05-thin90.a2m with 531 sequences, total weight= 531 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22723 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m1nA/info/1m1nA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m1nA/nostruct-align/1m1nA.t05-thin90.a2m.gz, have 272374 columns in 1138 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tzpA/nostruct-align/1tzpA.t05-thin90.a2m.gz
# 1tzpA.t05-thin90.a2m with 32 sequences, total weight= 9.99296 avg weight= 0.31228 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tzpA/info/1tzpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tzpA/nostruct-align/1tzpA.t05-thin90.a2m.gz, have 272614 columns in 1139 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n3lA/nostruct-align/1n3lA.t05-thin90.a2m.gz
# 1n3lA.t05-thin90.a2m with 767 sequences, total weight= 767 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23734 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n3lA/info/1n3lA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n3lA/nostruct-align/1n3lA.t05-thin90.a2m.gz, have 272946 columns in 1140 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1us0A/nostruct-align/1us0A.t05-thin90.a2m.gz
# 1us0A.t05-thin90.a2m with 2019 sequences, total weight= 2019 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2618 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1us0A/info/1us0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1us0A/nostruct-align/1us0A.t05-thin90.a2m.gz, have 273259 columns in 1141 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l8rA/nostruct-align/1l8rA.t05-thin90.a2m.gz
# 1l8rA.t05-thin90.a2m with 19 sequences, total weight= 3.37883 avg weight= 0.177833 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l8rA/info/1l8rA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l8rA/nostruct-align/1l8rA.t05-thin90.a2m.gz, have 273360 columns in 1142 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p9aG/nostruct-align/1p9aG.t05-thin90.a2m.gz
# 1p9aG.t05-thin90.a2m with 6912 sequences, total weight= 6912 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.93966 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p9aG/info/1p9aG.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p9aG/nostruct-align/1p9aG.t05-thin90.a2m.gz, have 273626 columns in 1143 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iqcA/nostruct-align/1iqcA.t05-thin90.a2m.gz
# 1iqcA.t05-thin90.a2m with 373 sequences, total weight= 373 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08826 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iqcA/info/1iqcA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iqcA/nostruct-align/1iqcA.t05-thin90.a2m.gz, have 273934 columns in 1144 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i0dA/nostruct-align/1i0dA.t05-thin90.a2m.gz
# 1i0dA.t05-thin90.a2m with 1052 sequences, total weight= 1052 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.936569 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i0dA/info/1i0dA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i0dA/nostruct-align/1i0dA.t05-thin90.a2m.gz, have 274265 columns in 1145 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q7eA/nostruct-align/1q7eA.t05-thin90.a2m.gz
# 1q7eA.t05-thin90.a2m with 773 sequences, total weight= 178.963 avg weight= 0.231518 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30937 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q7eA/info/1q7eA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q7eA/nostruct-align/1q7eA.t05-thin90.a2m.gz, have 274675 columns in 1146 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tvxA/nostruct-align/1tvxA.t05-thin90.a2m.gz
# 1tvxA.t05-thin90.a2m with 229 sequences, total weight= 40.3522 avg weight= 0.17621 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30056 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tvxA/info/1tvxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tvxA/nostruct-align/1tvxA.t05-thin90.a2m.gz, have 274739 columns in 1147 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hz4A/nostruct-align/1hz4A.t05-thin90.a2m.gz
# 1hz4A.t05-thin90.a2m with 11 sequences, total weight= 3.9945 avg weight= 0.363136 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hz4A/info/1hz4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hz4A/nostruct-align/1hz4A.t05-thin90.a2m.gz, have 275105 columns in 1148 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wer/nostruct-align/1wer.t05-thin90.a2m.gz
# 1wer.t05-thin90.a2m with 266 sequences, total weight= 266 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03194 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wer/info/1wer.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wer/nostruct-align/1wer.t05-thin90.a2m.gz, have 275429 columns in 1149 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w0pA/nostruct-align/1w0pA.t05-thin90.a2m.gz
# 1w0pA.t05-thin90.a2m with 952 sequences, total weight= 274.853 avg weight= 0.288711 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30196 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w0pA/info/1w0pA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1w0pA/nostruct-align/1w0pA.t05-thin90.a2m.gz, have 276182 columns in 1150 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qe3A/nostruct-align/1qe3A.t05-thin90.a2m.gz
# 1qe3A.t05-thin90.a2m with 1886 sequences, total weight= 1886 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06585 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qe3A/info/1qe3A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qe3A/nostruct-align/1qe3A.t05-thin90.a2m.gz, have 276649 columns in 1151 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jz8A/nostruct-align/1jz8A.t05-thin90.a2m.gz
# 1jz8A.t05-thin90.a2m with 649 sequences, total weight= 649 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12016 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jz8A/info/1jz8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jz8A/nostruct-align/1jz8A.t05-thin90.a2m.gz, have 277660 columns in 1152 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lkkA/nostruct-align/1lkkA.t05-thin90.a2m.gz
# 1lkkA.t05-thin90.a2m with 824 sequences, total weight= 824 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26656 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lkkA/info/1lkkA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lkkA/nostruct-align/1lkkA.t05-thin90.a2m.gz, have 277765 columns in 1153 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qnaA/nostruct-align/1qnaA.t05-thin90.a2m.gz
# 1qnaA.t05-thin90.a2m with 121 sequences, total weight= 27.5341 avg weight= 0.227555 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qnaA/info/1qnaA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qnaA/nostruct-align/1qnaA.t05-thin90.a2m.gz, have 277947 columns in 1154 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n7oA/nostruct-align/1n7oA.t05-thin90.a2m.gz
# 1n7oA.t05-thin90.a2m with 73 sequences, total weight= 73 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15662 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n7oA/info/1n7oA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n7oA/nostruct-align/1n7oA.t05-thin90.a2m.gz, have 278668 columns in 1155 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r5lA/nostruct-align/1r5lA.t05-thin90.a2m.gz
# 1r5lA.t05-thin90.a2m with 566 sequences, total weight= 566 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.989558 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r5lA/info/1r5lA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r5lA/nostruct-align/1r5lA.t05-thin90.a2m.gz, have 278919 columns in 1156 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wouA/nostruct-align/1wouA.t05-thin90.a2m.gz
# 1wouA.t05-thin90.a2m with 2040 sequences, total weight= 2040 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17771 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wouA/info/1wouA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1w/1wouA/nostruct-align/1wouA.t05-thin90.a2m.gz, have 279038 columns in 1157 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ukfA/nostruct-align/1ukfA.t05-thin90.a2m.gz
# 1ukfA.t05-thin90.a2m with 21 sequences, total weight= 21 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15148 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ukfA/info/1ukfA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ukfA/nostruct-align/1ukfA.t05-thin90.a2m.gz, have 279226 columns in 1158 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jtgB/nostruct-align/1jtgB.t05-thin90.a2m.gz
# 1jtgB.t05-thin90.a2m with 4 sequences, total weight= 4 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1647 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jtgB/info/1jtgB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jtgB/nostruct-align/1jtgB.t05-thin90.a2m.gz, have 279391 columns in 1159 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nz0A/nostruct-align/1nz0A.t05-thin90.a2m.gz
# 1nz0A.t05-thin90.a2m with 221 sequences, total weight= 126.943 avg weight= 0.574402 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30206 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nz0A/info/1nz0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nz0A/nostruct-align/1nz0A.t05-thin90.a2m.gz, have 279500 columns in 1160 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kw3B/nostruct-align/1kw3B.t05-thin90.a2m.gz
# 1kw3B.t05-thin90.a2m with 1758 sequences, total weight= 1758 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.983909 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kw3B/info/1kw3B.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kw3B/nostruct-align/1kw3B.t05-thin90.a2m.gz, have 279788 columns in 1161 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iv3A/nostruct-align/1iv3A.t05-thin90.a2m.gz
# 1iv3A.t05-thin90.a2m with 196 sequences, total weight= 10.0542 avg weight= 0.0512971 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iv3A/info/1iv3A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iv3A/nostruct-align/1iv3A.t05-thin90.a2m.gz, have 279938 columns in 1162 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p5vA/nostruct-align/1p5vA.t05-thin90.a2m.gz
# 1p5vA.t05-thin90.a2m with 226 sequences, total weight= 184.467 avg weight= 0.816226 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30086 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p5vA/info/1p5vA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p5vA/nostruct-align/1p5vA.t05-thin90.a2m.gz, have 280129 columns in 1163 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oi2A/nostruct-align/1oi2A.t05-thin90.a2m.gz
# 1oi2A.t05-thin90.a2m with 160 sequences, total weight= 15.6128 avg weight= 0.09758 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oi2A/info/1oi2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oi2A/nostruct-align/1oi2A.t05-thin90.a2m.gz, have 280465 columns in 1164 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jf8A/nostruct-align/1jf8A.t05-thin90.a2m.gz
# 1jf8A.t05-thin90.a2m with 523 sequences, total weight= 216.838 avg weight= 0.414603 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31003 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jf8A/info/1jf8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jf8A/nostruct-align/1jf8A.t05-thin90.a2m.gz, have 280595 columns in 1165 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b6a/nostruct-align/1b6a.t05-thin90.a2m.gz
# 1b6a.t05-thin90.a2m with 1245 sequences, total weight= 152.347 avg weight= 0.122367 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30271 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b6a/info/1b6a.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1b6a/nostruct-align/1b6a.t05-thin90.a2m.gz, have 280950 columns in 1166 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gudA/nostruct-align/1gudA.t05-thin90.a2m.gz
# 1gudA.t05-thin90.a2m with 2050 sequences, total weight= 2050 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.928218 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gudA/info/1gudA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gudA/nostruct-align/1gudA.t05-thin90.a2m.gz, have 281238 columns in 1167 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k7iA/nostruct-align/1k7iA.t05-thin90.a2m.gz
# 1k7iA.t05-thin90.a2m with 1567 sequences, total weight= 1567 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13248 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k7iA/info/1k7iA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k7iA/nostruct-align/1k7iA.t05-thin90.a2m.gz, have 281700 columns in 1168 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a8o/nostruct-align/1a8o.t05-thin90.a2m.gz
# 1a8o.t05-thin90.a2m with 131 sequences, total weight= 7.79948 avg weight= 0.059538 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a8o/info/1a8o.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a8o/nostruct-align/1a8o.t05-thin90.a2m.gz, have 281770 columns in 1169 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ew4A/nostruct-align/1ew4A.t05-thin90.a2m.gz
# 1ew4A.t05-thin90.a2m with 94 sequences, total weight= 24.3083 avg weight= 0.258599 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ew4A/info/1ew4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ew4A/nostruct-align/1ew4A.t05-thin90.a2m.gz, have 281876 columns in 1170 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3v/3vub/nostruct-align/3vub.t05-thin90.a2m.gz
# 3vub.t05-thin90.a2m with 18 sequences, total weight= 10.2047 avg weight= 0.566929 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3v/3vub/info/3vub.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/3v/3vub/nostruct-align/3vub.t05-thin90.a2m.gz, have 281977 columns in 1171 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2baa/nostruct-align/2baa.t05-thin90.a2m.gz
# 2baa.t05-thin90.a2m with 282 sequences, total weight= 51.3228 avg weight= 0.181996 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2baa/info/2baa.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2b/2baa/nostruct-align/2baa.t05-thin90.a2m.gz, have 282220 columns in 1172 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2f/2fdn/nostruct-align/2fdn.t05-thin90.a2m.gz
# 2fdn.t05-thin90.a2m with 277 sequences, total weight= 16.6013 avg weight= 0.0599325 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2f/2fdn/info/2fdn.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2f/2fdn/nostruct-align/2fdn.t05-thin90.a2m.gz, have 282275 columns in 1173 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l6xA/nostruct-align/1l6xA.t05-thin90.a2m.gz
# 1l6xA.t05-thin90.a2m with 5649 sequences, total weight= 115.949 avg weight= 0.0205256 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31319 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l6xA/info/1l6xA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l6xA/nostruct-align/1l6xA.t05-thin90.a2m.gz, have 282482 columns in 1174 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1smbA/nostruct-align/1smbA.t05-thin90.a2m.gz
# 1smbA.t05-thin90.a2m with 562 sequences, total weight= 562 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25344 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1smbA/info/1smbA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1smbA/nostruct-align/1smbA.t05-thin90.a2m.gz, have 282631 columns in 1175 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mxrA/nostruct-align/1mxrA.t05-thin90.a2m.gz
# 1mxrA.t05-thin90.a2m with 350 sequences, total weight= 350 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22181 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mxrA/info/1mxrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mxrA/nostruct-align/1mxrA.t05-thin90.a2m.gz, have 282970 columns in 1176 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t82A/nostruct-align/1t82A.t05-thin90.a2m.gz
# 1t82A.t05-thin90.a2m with 455 sequences, total weight= 455 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07168 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t82A/info/1t82A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t82A/nostruct-align/1t82A.t05-thin90.a2m.gz, have 283113 columns in 1177 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n6aA/nostruct-align/1n6aA.t05-thin90.a2m.gz
# 1n6aA.t05-thin90.a2m with 477 sequences, total weight= 477 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0462 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n6aA/info/1n6aA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n6aA/nostruct-align/1n6aA.t05-thin90.a2m.gz, have 283347 columns in 1178 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ecsA/nostruct-align/1ecsA.t05-thin90.a2m.gz
# 1ecsA.t05-thin90.a2m with 2166 sequences, total weight= 2166 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.905963 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ecsA/info/1ecsA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ecsA/nostruct-align/1ecsA.t05-thin90.a2m.gz, have 283467 columns in 1179 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f7dA/nostruct-align/1f7dA.t05-thin90.a2m.gz
# 1f7dA.t05-thin90.a2m with 577 sequences, total weight= 577 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26418 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f7dA/info/1f7dA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f7dA/nostruct-align/1f7dA.t05-thin90.a2m.gz, have 283585 columns in 1180 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lk9A/nostruct-align/1lk9A.t05-thin90.a2m.gz
# 1lk9A.t05-thin90.a2m with 4739 sequences, total weight= 4739 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.928064 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lk9A/info/1lk9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lk9A/nostruct-align/1lk9A.t05-thin90.a2m.gz, have 284010 columns in 1181 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pmhX/nostruct-align/1pmhX.t05-thin90.a2m.gz
# 1pmhX.t05-thin90.a2m with 6 sequences, total weight= 6 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23677 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pmhX/info/1pmhX.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pmhX/nostruct-align/1pmhX.t05-thin90.a2m.gz, have 284193 columns in 1182 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m1qA/nostruct-align/1m1qA.t05-thin90.a2m.gz
# 1m1qA.t05-thin90.a2m with 47 sequences, total weight= 47 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23935 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m1qA/info/1m1qA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m1qA/nostruct-align/1m1qA.t05-thin90.a2m.gz, have 284283 columns in 1183 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nnxA/nostruct-align/1nnxA.t05-thin90.a2m.gz
# 1nnxA.t05-thin90.a2m with 42 sequences, total weight= 17.598 avg weight= 0.418999 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nnxA/info/1nnxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nnxA/nostruct-align/1nnxA.t05-thin90.a2m.gz, have 284376 columns in 1184 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ouwA/nostruct-align/1ouwA.t05-thin90.a2m.gz
# 1ouwA.t05-thin90.a2m with 241 sequences, total weight= 94.4772 avg weight= 0.392022 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3015 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ouwA/info/1ouwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ouwA/nostruct-align/1ouwA.t05-thin90.a2m.gz, have 284525 columns in 1185 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fm0D/nostruct-align/1fm0D.t05-thin90.a2m.gz
# 1fm0D.t05-thin90.a2m with 230 sequences, total weight= 57.6835 avg weight= 0.250798 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30149 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fm0D/info/1fm0D.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fm0D/nostruct-align/1fm0D.t05-thin90.a2m.gz, have 284606 columns in 1186 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h99A/nostruct-align/1h99A.t05-thin90.a2m.gz
# 1h99A.t05-thin90.a2m with 248 sequences, total weight= 248 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00787 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h99A/info/1h99A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h99A/nostruct-align/1h99A.t05-thin90.a2m.gz, have 284826 columns in 1187 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oksA/nostruct-align/1oksA.t05-thin90.a2m.gz
# 1oksA.t05-thin90.a2m with 5 sequences, total weight= 3.01005 avg weight= 0.60201 9 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oksA/info/1oksA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oksA/nostruct-align/1oksA.t05-thin90.a2m.gz, have 284879 columns in 1188 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c9oA/nostruct-align/1c9oA.t05-thin90.a2m.gz
# 1c9oA.t05-thin90.a2m with 644 sequences, total weight= 27.3034 avg weight= 0.0423965 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c9oA/info/1c9oA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1c9oA/nostruct-align/1c9oA.t05-thin90.a2m.gz, have 284945 columns in 1189 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pa1A/nostruct-align/1pa1A.t05-thin90.a2m.gz
# 1pa1A.t05-thin90.a2m with 1073 sequences, total weight= 1073 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17612 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pa1A/info/1pa1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pa1A/nostruct-align/1pa1A.t05-thin90.a2m.gz, have 285247 columns in 1190 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hd2A/nostruct-align/1hd2A.t05-thin90.a2m.gz
# 1hd2A.t05-thin90.a2m with 1530 sequences, total weight= 1530 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24071 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hd2A/info/1hd2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hd2A/nostruct-align/1hd2A.t05-thin90.a2m.gz, have 285408 columns in 1191 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iq6A/nostruct-align/1iq6A.t05-thin90.a2m.gz
# 1iq6A.t05-thin90.a2m with 840 sequences, total weight= 840 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09035 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iq6A/info/1iq6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iq6A/nostruct-align/1iq6A.t05-thin90.a2m.gz, have 285540 columns in 1192 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ummA/nostruct-align/1ummA.t05-thin90.a2m.gz
# 1ummA.t05-thin90.a2m with 1573 sequences, total weight= 1573 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.965701 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ummA/info/1ummA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ummA/nostruct-align/1ummA.t05-thin90.a2m.gz, have 285689 columns in 1193 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2a/2arcA/nostruct-align/2arcA.t05-thin90.a2m.gz
# 2arcA.t05-thin90.a2m with 9 sequences, total weight= 5.3813 avg weight= 0.597922 17 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2a/2arcA/info/2arcA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2a/2arcA/nostruct-align/2arcA.t05-thin90.a2m.gz, have 285850 columns in 1194 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f6bA/nostruct-align/1f6bA.t05-thin90.a2m.gz
# 1f6bA.t05-thin90.a2m with 5963 sequences, total weight= 5963 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.988548 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f6bA/info/1f6bA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f6bA/nostruct-align/1f6bA.t05-thin90.a2m.gz, have 286026 columns in 1195 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nfp/nostruct-align/1nfp.t05-thin90.a2m.gz
# 1nfp.t05-thin90.a2m with 911 sequences, total weight= 911 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11177 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nfp/info/1nfp.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nfp/nostruct-align/1nfp.t05-thin90.a2m.gz, have 286254 columns in 1196 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gppA/nostruct-align/1gppA.t05-thin90.a2m.gz
# 1gppA.t05-thin90.a2m with 55 sequences, total weight= 55 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28072 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gppA/info/1gppA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gppA/nostruct-align/1gppA.t05-thin90.a2m.gz, have 286471 columns in 1197 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pwxA/nostruct-align/1pwxA.t05-thin90.a2m.gz
# 1pwxA.t05-thin90.a2m with 9016 sequences, total weight= 9016 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11478 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pwxA/info/1pwxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pwxA/nostruct-align/1pwxA.t05-thin90.a2m.gz, have 286723 columns in 1198 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1es9A/nostruct-align/1es9A.t05-thin90.a2m.gz
# 1es9A.t05-thin90.a2m with 1259 sequences, total weight= 1259 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.786131 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1es9A/info/1es9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1es9A/nostruct-align/1es9A.t05-thin90.a2m.gz, have 286935 columns in 1199 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eca/nostruct-align/1eca.t05-thin90.a2m.gz
# 1eca.t05-thin90.a2m with 967 sequences, total weight= 967 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2596 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eca/info/1eca.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eca/nostruct-align/1eca.t05-thin90.a2m.gz, have 287071 columns in 1200 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q7lA/nostruct-align/1q7lA.t05-thin90.a2m.gz
# 1q7lA.t05-thin90.a2m with 1319 sequences, total weight= 1319 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11822 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q7lA/info/1q7lA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q7lA/nostruct-align/1q7lA.t05-thin90.a2m.gz, have 287263 columns in 1201 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1ja1A/nostruct-align/1ja1A.t05-thin90.a2m.gz
# 1ja1A.t05-thin90.a2m with 1827 sequences, total weight= 1827 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0305 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1ja1A/info/1ja1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1ja1A/nostruct-align/1ja1A.t05-thin90.a2m.gz, have 287879 columns in 1202 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h6fA/nostruct-align/1h6fA.t05-thin90.a2m.gz
# 1h6fA.t05-thin90.a2m with 241 sequences, total weight= 37.771 avg weight= 0.156726 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h6fA/info/1h6fA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h6fA/nostruct-align/1h6fA.t05-thin90.a2m.gz, have 288063 columns in 1203 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1te2A/nostruct-align/1te2A.t05-thin90.a2m.gz
# 1te2A.t05-thin90.a2m with 3559 sequences, total weight= 3559 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.874784 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1te2A/info/1te2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1te2A/nostruct-align/1te2A.t05-thin90.a2m.gz, have 288281 columns in 1204 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54F/nostruct-align/1v54F.t05-thin90.a2m.gz
# 1v54F.t05-thin90.a2m with 49 sequences, total weight= 16.996 avg weight= 0.346858 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54F/info/1v54F.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v54F/nostruct-align/1v54F.t05-thin90.a2m.gz, have 288379 columns in 1205 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yge/nostruct-align/1yge.t05-thin90.a2m.gz
# 1yge.t05-thin90.a2m with 228 sequences, total weight= 66.1226 avg weight= 0.290011 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yge/info/1yge.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1y/1yge/nostruct-align/1yge.t05-thin90.a2m.gz, have 289218 columns in 1206 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1in6A/nostruct-align/1in6A.t05-thin90.a2m.gz
# 1in6A.t05-thin90.a2m with 9864 sequences, total weight= 9864 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.902915 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1in6A/info/1in6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1in6A/nostruct-align/1in6A.t05-thin90.a2m.gz, have 289518 columns in 1207 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u4bA/nostruct-align/1u4bA.t05-thin90.a2m.gz
# 1u4bA.t05-thin90.a2m with 733 sequences, total weight= 733 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21839 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u4bA/info/1u4bA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1u4bA/nostruct-align/1u4bA.t05-thin90.a2m.gz, have 290098 columns in 1208 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uptB/nostruct-align/1uptB.t05-thin90.a2m.gz
# 1uptB.t05-thin90.a2m with 12 sequences, total weight= 5.31553 avg weight= 0.44296 18 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uptB/info/1uptB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uptB/nostruct-align/1uptB.t05-thin90.a2m.gz, have 290156 columns in 1209 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p57A/nostruct-align/1p57A.t05-thin90.a2m.gz
# 1p57A.t05-thin90.a2m with 6 sequences, total weight= 2.79798 avg weight= 0.46633 10 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p57A/info/1p57A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p57A/nostruct-align/1p57A.t05-thin90.a2m.gz, have 290266 columns in 1210 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vlyA/nostruct-align/1vlyA.t05-thin90.a2m.gz
# 1vlyA.t05-thin90.a2m with 628 sequences, total weight= 628 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20091 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vlyA/info/1vlyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vlyA/nostruct-align/1vlyA.t05-thin90.a2m.gz, have 290589 columns in 1211 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u7iA/nostruct-align/1u7iA.t05-thin90.a2m.gz
# 1u7iA.t05-thin90.a2m with 682 sequences, total weight= 682 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02312 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u7iA/info/1u7iA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1u7iA/nostruct-align/1u7iA.t05-thin90.a2m.gz, have 290723 columns in 1212 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o4vA/nostruct-align/1o4vA.t05-thin90.a2m.gz
# 1o4vA.t05-thin90.a2m with 270 sequences, total weight= 16.6658 avg weight= 0.0617253 42 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o4vA/info/1o4vA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o4vA/nostruct-align/1o4vA.t05-thin90.a2m.gz, have 290892 columns in 1213 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gq8A/nostruct-align/1gq8A.t05-thin90.a2m.gz
# 1gq8A.t05-thin90.a2m with 330 sequences, total weight= 172.921 avg weight= 0.524004 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30265 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gq8A/info/1gq8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gq8A/nostruct-align/1gq8A.t05-thin90.a2m.gz, have 291211 columns in 1214 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m2dA/nostruct-align/1m2dA.t05-thin90.a2m.gz
# 1m2dA.t05-thin90.a2m with 155 sequences, total weight= 108.9 avg weight= 0.70258 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3009 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m2dA/info/1m2dA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m2dA/nostruct-align/1m2dA.t05-thin90.a2m.gz, have 291312 columns in 1215 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1khiA/nostruct-align/1khiA.t05-thin90.a2m.gz
# 1khiA.t05-thin90.a2m with 97 sequences, total weight= 16.439 avg weight= 0.169474 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1khiA/info/1khiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1khiA/nostruct-align/1khiA.t05-thin90.a2m.gz, have 291459 columns in 1216 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mqkH/nostruct-align/1mqkH.t05-thin90.a2m.gz
# 1mqkH.t05-thin90.a2m with 12780 sequences, total weight= 19.9891 avg weight= 0.00156409 45 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mqkH/info/1mqkH.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mqkH/nostruct-align/1mqkH.t05-thin90.a2m.gz, have 291582 columns in 1217 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m7gA/nostruct-align/1m7gA.t05-thin90.a2m.gz
# 1m7gA.t05-thin90.a2m with 3355 sequences, total weight= 3355 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.796683 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m7gA/info/1m7gA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m7gA/nostruct-align/1m7gA.t05-thin90.a2m.gz, have 291790 columns in 1218 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f46A/nostruct-align/1f46A.t05-thin90.a2m.gz
# 1f46A.t05-thin90.a2m with 47 sequences, total weight= 22.5216 avg weight= 0.479183 39 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f46A/info/1f46A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f46A/nostruct-align/1f46A.t05-thin90.a2m.gz, have 291929 columns in 1219 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gkmA/nostruct-align/1gkmA.t05-thin90.a2m.gz
# 1gkmA.t05-thin90.a2m with 272 sequences, total weight= 31.5008 avg weight= 0.115812 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gkmA/info/1gkmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gkmA/nostruct-align/1gkmA.t05-thin90.a2m.gz, have 292438 columns in 1220 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tu9A/nostruct-align/1tu9A.t05-thin90.a2m.gz
# 1tu9A.t05-thin90.a2m with 516 sequences, total weight= 516 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17841 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tu9A/info/1tu9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tu9A/nostruct-align/1tu9A.t05-thin90.a2m.gz, have 292569 columns in 1221 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ru4A/nostruct-align/1ru4A.t05-thin90.a2m.gz
# 1ru4A.t05-thin90.a2m with 1178 sequences, total weight= 1178 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.96565 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ru4A/info/1ru4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1ru4A/nostruct-align/1ru4A.t05-thin90.a2m.gz, have 292969 columns in 1222 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m33A/nostruct-align/1m33A.t05-thin90.a2m.gz
# 1m33A.t05-thin90.a2m with 7473 sequences, total weight= 7473 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.684912 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m33A/info/1m33A.stride-mixed.near-backbone-11
WARNING: skipping e, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m33A/nostruct-align/1m33A.t05-thin90.a2m.gz, have 293224 columns in 1223 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t4hA/nostruct-align/1t4hA.t05-thin90.a2m.gz
# 1t4hA.t05-thin90.a2m with 13489 sequences, total weight= 13489 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13344 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t4hA/info/1t4hA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t4hA/nostruct-align/1t4hA.t05-thin90.a2m.gz, have 293494 columns in 1224 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1igqA/nostruct-align/1igqA.t05-thin90.a2m.gz
# 1igqA.t05-thin90.a2m with 6 sequences, total weight= 2.45317 avg weight= 0.408862 10 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1igqA/info/1igqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1igqA/nostruct-align/1igqA.t05-thin90.a2m.gz, have 293548 columns in 1225 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mtyD/nostruct-align/1mtyD.t05-thin90.a2m.gz
# 1mtyD.t05-thin90.a2m with 163 sequences, total weight= 114.737 avg weight= 0.70391 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mtyD/info/1mtyD.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mtyD/nostruct-align/1mtyD.t05-thin90.a2m.gz, have 294060 columns in 1226 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rxqA/nostruct-align/1rxqA.t05-thin90.a2m.gz
# 1rxqA.t05-thin90.a2m with 197 sequences, total weight= 197 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.850961 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rxqA/info/1rxqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rxqA/nostruct-align/1rxqA.t05-thin90.a2m.gz, have 294234 columns in 1227 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i24A/nostruct-align/1i24A.t05-thin90.a2m.gz
# 1i24A.t05-thin90.a2m with 10283 sequences, total weight= 10283 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.847563 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i24A/info/1i24A.stride-mixed.near-backbone-11
WARNING: skipping i, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i24A/nostruct-align/1i24A.t05-thin90.a2m.gz, have 294626 columns in 1228 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o98A/nostruct-align/1o98A.t05-thin90.a2m.gz
# 1o98A.t05-thin90.a2m with 1055 sequences, total weight= 1055 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11075 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o98A/info/1o98A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o98A/nostruct-align/1o98A.t05-thin90.a2m.gz, have 295135 columns in 1229 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dk8A/nostruct-align/1dk8A.t05-thin90.a2m.gz
# 1dk8A.t05-thin90.a2m with 369 sequences, total weight= 369 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14279 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dk8A/info/1dk8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dk8A/nostruct-align/1dk8A.t05-thin90.a2m.gz, have 295282 columns in 1230 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qnrA/nostruct-align/1qnrA.t05-thin90.a2m.gz
# 1qnrA.t05-thin90.a2m with 2313 sequences, total weight= 2313 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.807306 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qnrA/info/1qnrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qnrA/nostruct-align/1qnrA.t05-thin90.a2m.gz, have 295626 columns in 1231 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eokA/nostruct-align/1eokA.t05-thin90.a2m.gz
# 1eokA.t05-thin90.a2m with 102 sequences, total weight= 102 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0847 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eokA/info/1eokA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eokA/nostruct-align/1eokA.t05-thin90.a2m.gz, have 295908 columns in 1232 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uehA/nostruct-align/1uehA.t05-thin90.a2m.gz
# 1uehA.t05-thin90.a2m with 402 sequences, total weight= 53.8212 avg weight= 0.133884 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3005 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uehA/info/1uehA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uehA/nostruct-align/1uehA.t05-thin90.a2m.gz, have 296122 columns in 1233 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3p/3pviA/nostruct-align/3pviA.t05-thin90.a2m.gz
# 3pviA.t05-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24387 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3p/3pviA/info/3pviA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/3p/3pviA/nostruct-align/3pviA.t05-thin90.a2m.gz, have 296278 columns in 1234 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sh8A/nostruct-align/1sh8A.t05-thin90.a2m.gz
# 1sh8A.t05-thin90.a2m with 798 sequences, total weight= 798 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.987094 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sh8A/info/1sh8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sh8A/nostruct-align/1sh8A.t05-thin90.a2m.gz, have 296431 columns in 1235 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m6kA/nostruct-align/1m6kA.t05-thin90.a2m.gz
# 1m6kA.t05-thin90.a2m with 1608 sequences, total weight= 1608 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10444 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m6kA/info/1m6kA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m6kA/nostruct-align/1m6kA.t05-thin90.a2m.gz, have 296681 columns in 1236 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tr0A/nostruct-align/1tr0A.t05-thin90.a2m.gz
# 1tr0A.t05-thin90.a2m with 119 sequences, total weight= 119 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1643 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tr0A/info/1tr0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tr0A/nostruct-align/1tr0A.t05-thin90.a2m.gz, have 296787 columns in 1237 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bg6/nostruct-align/1bg6.t05-thin90.a2m.gz
# 1bg6.t05-thin90.a2m with 5222 sequences, total weight= 5222 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.548223 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bg6/info/1bg6.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bg6/nostruct-align/1bg6.t05-thin90.a2m.gz, have 297136 columns in 1238 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1idpA/nostruct-align/1idpA.t05-thin90.a2m.gz
# 1idpA.t05-thin90.a2m with 26 sequences, total weight= 16.6727 avg weight= 0.641258 24 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1idpA/info/1idpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1idpA/nostruct-align/1idpA.t05-thin90.a2m.gz, have 297283 columns in 1239 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n7hA/nostruct-align/1n7hA.t05-thin90.a2m.gz
# 1n7hA.t05-thin90.a2m with 10909 sequences, total weight= 10909 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.931112 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n7hA/info/1n7hA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1n7hA/nostruct-align/1n7hA.t05-thin90.a2m.gz, have 297614 columns in 1240 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r2zA/nostruct-align/1r2zA.t05-thin90.a2m.gz
# 1r2zA.t05-thin90.a2m with 325 sequences, total weight= 81.5363 avg weight= 0.250881 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30249 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r2zA/info/1r2zA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r2zA/nostruct-align/1r2zA.t05-thin90.a2m.gz, have 297887 columns in 1241 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uq5A/nostruct-align/1uq5A.t05-thin90.a2m.gz
# 1uq5A.t05-thin90.a2m with 142 sequences, total weight= 142 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23423 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uq5A/info/1uq5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uq5A/nostruct-align/1uq5A.t05-thin90.a2m.gz, have 298150 columns in 1242 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nwwA/nostruct-align/1nwwA.t05-thin90.a2m.gz
# 1nwwA.t05-thin90.a2m with 768 sequences, total weight= 768 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.810173 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nwwA/info/1nwwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nwwA/nostruct-align/1nwwA.t05-thin90.a2m.gz, have 298295 columns in 1243 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oxjA/nostruct-align/1oxjA.t05-thin90.a2m.gz
# 1oxjA.t05-thin90.a2m with 27 sequences, total weight= 15.1982 avg weight= 0.562898 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oxjA/info/1oxjA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oxjA/nostruct-align/1oxjA.t05-thin90.a2m.gz, have 298465 columns in 1244 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bbkH/nostruct-align/2bbkH.t05-thin90.a2m.gz
# 2bbkH.t05-thin90.a2m with 6366 sequences, total weight= 6366 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.73689 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bbkH/info/2bbkH.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2b/2bbkH/nostruct-align/2bbkH.t05-thin90.a2m.gz, have 298820 columns in 1245 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i6lA/nostruct-align/1i6lA.t05-thin90.a2m.gz
# 1i6lA.t05-thin90.a2m with 785 sequences, total weight= 785 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24479 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i6lA/info/1i6lA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i6lA/nostruct-align/1i6lA.t05-thin90.a2m.gz, have 299146 columns in 1246 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i52A/nostruct-align/1i52A.t05-thin90.a2m.gz
# 1i52A.t05-thin90.a2m with 2654 sequences, total weight= 2654 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01781 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i52A/info/1i52A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i52A/nostruct-align/1i52A.t05-thin90.a2m.gz, have 299371 columns in 1247 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2t/2tgi/nostruct-align/2tgi.t05-thin90.a2m.gz
# 2tgi.t05-thin90.a2m with 399 sequences, total weight= 61.811 avg weight= 0.154915 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30125 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2t/2tgi/info/2tgi.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2t/2tgi/nostruct-align/2tgi.t05-thin90.a2m.gz, have 299483 columns in 1248 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l3kA/nostruct-align/1l3kA.t05-thin90.a2m.gz
# 1l3kA.t05-thin90.a2m with 4410 sequences, total weight= 4410 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05272 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l3kA/info/1l3kA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1l3kA/nostruct-align/1l3kA.t05-thin90.a2m.gz, have 299646 columns in 1249 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qv1A/nostruct-align/1qv1A.t05-thin90.a2m.gz
# 1qv1A.t05-thin90.a2m with 800 sequences, total weight= 800 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09326 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qv1A/info/1qv1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qv1A/nostruct-align/1qv1A.t05-thin90.a2m.gz, have 299833 columns in 1250 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k77A/nostruct-align/1k77A.t05-thin90.a2m.gz
# 1k77A.t05-thin90.a2m with 1022 sequences, total weight= 1022 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.90773 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k77A/info/1k77A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k77A/nostruct-align/1k77A.t05-thin90.a2m.gz, have 300093 columns in 1251 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rzhM/nostruct-align/1rzhM.t05-thin90.a2m.gz
# 1rzhM.t05-thin90.a2m with 233 sequences, total weight= 16.1165 avg weight= 0.0691696 32 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rzhM/info/1rzhM.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rzhM/nostruct-align/1rzhM.t05-thin90.a2m.gz, have 300394 columns in 1252 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iu8A/nostruct-align/1iu8A.t05-thin90.a2m.gz
# 1iu8A.t05-thin90.a2m with 132 sequences, total weight= 96.0797 avg weight= 0.727877 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30038 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iu8A/info/1iu8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iu8A/nostruct-align/1iu8A.t05-thin90.a2m.gz, have 300600 columns in 1253 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jh6A/nostruct-align/1jh6A.t05-thin90.a2m.gz
# 1jh6A.t05-thin90.a2m with 214 sequences, total weight= 214 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04369 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jh6A/info/1jh6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jh6A/nostruct-align/1jh6A.t05-thin90.a2m.gz, have 300781 columns in 1254 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jl0A/nostruct-align/1jl0A.t05-thin90.a2m.gz
# 1jl0A.t05-thin90.a2m with 91 sequences, total weight= 20.8387 avg weight= 0.228996 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jl0A/info/1jl0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jl0A/nostruct-align/1jl0A.t05-thin90.a2m.gz, have 301091 columns in 1255 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a92A/nostruct-align/1a92A.t05-thin90.a2m.gz
# 1a92A.t05-thin90.a2m with 26 sequences, total weight= 3.25279 avg weight= 0.125107 16 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a92A/info/1a92A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a92A/nostruct-align/1a92A.t05-thin90.a2m.gz, have 301141 columns in 1256 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t6eX/nostruct-align/1t6eX.t05-thin90.a2m.gz
# 1t6eX.t05-thin90.a2m with 961 sequences, total weight= 961 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15895 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t6eX/info/1t6eX.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t6eX/nostruct-align/1t6eX.t05-thin90.a2m.gz, have 301503 columns in 1257 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q8dA/nostruct-align/1q8dA.t05-thin90.a2m.gz
# 1q8dA.t05-thin90.a2m with 30 sequences, total weight= 5.80036 avg weight= 0.193345 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q8dA/info/1q8dA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q8dA/nostruct-align/1q8dA.t05-thin90.a2m.gz, have 301603 columns in 1258 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o08A/nostruct-align/1o08A.t05-thin90.a2m.gz
# 1o08A.t05-thin90.a2m with 3456 sequences, total weight= 3456 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.873408 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o08A/info/1o08A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o08A/nostruct-align/1o08A.t05-thin90.a2m.gz, have 301824 columns in 1259 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dbxA/nostruct-align/1dbxA.t05-thin90.a2m.gz
# 1dbxA.t05-thin90.a2m with 437 sequences, total weight= 437 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24223 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dbxA/info/1dbxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dbxA/nostruct-align/1dbxA.t05-thin90.a2m.gz, have 301976 columns in 1260 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jbeA/nostruct-align/1jbeA.t05-thin90.a2m.gz
# 1jbeA.t05-thin90.a2m with 9137 sequences, total weight= 9137 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22895 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jbeA/info/1jbeA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jbeA/nostruct-align/1jbeA.t05-thin90.a2m.gz, have 302102 columns in 1261 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jubA/nostruct-align/1jubA.t05-thin90.a2m.gz
# 1jubA.t05-thin90.a2m with 2485 sequences, total weight= 2485 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.978076 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jubA/info/1jubA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jubA/nostruct-align/1jubA.t05-thin90.a2m.gz, have 302413 columns in 1262 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oflA/nostruct-align/1oflA.t05-thin90.a2m.gz
# 1oflA.t05-thin90.a2m with 551 sequences, total weight= 551 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18928 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oflA/info/1oflA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oflA/nostruct-align/1oflA.t05-thin90.a2m.gz, have 302894 columns in 1263 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhnA/nostruct-align/1vhnA.t05-thin90.a2m.gz
# 1vhnA.t05-thin90.a2m with 1292 sequences, total weight= 1292 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05198 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhnA/info/1vhnA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vhnA/nostruct-align/1vhnA.t05-thin90.a2m.gz, have 303199 columns in 1264 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lyqA/nostruct-align/1lyqA.t05-thin90.a2m.gz
# 1lyqA.t05-thin90.a2m with 93 sequences, total weight= 32.9463 avg weight= 0.354261 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lyqA/info/1lyqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lyqA/nostruct-align/1lyqA.t05-thin90.a2m.gz, have 303300 columns in 1265 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r29A/nostruct-align/1r29A.t05-thin90.a2m.gz
# 1r29A.t05-thin90.a2m with 1379 sequences, total weight= 1379 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15704 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r29A/info/1r29A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r29A/nostruct-align/1r29A.t05-thin90.a2m.gz, have 303422 columns in 1266 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rwjA/nostruct-align/1rwjA.t05-thin90.a2m.gz
# 1rwjA.t05-thin90.a2m with 62 sequences, total weight= 21.1963 avg weight= 0.341876 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rwjA/info/1rwjA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rwjA/nostruct-align/1rwjA.t05-thin90.a2m.gz, have 303503 columns in 1267 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dmgA/nostruct-align/1dmgA.t05-thin90.a2m.gz
# 1dmgA.t05-thin90.a2m with 332 sequences, total weight= 119.188 avg weight= 0.358999 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30103 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dmgA/info/1dmgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dmgA/nostruct-align/1dmgA.t05-thin90.a2m.gz, have 303675 columns in 1268 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ofzA/nostruct-align/1ofzA.t05-thin90.a2m.gz
# 1ofzA.t05-thin90.a2m with 42 sequences, total weight= 42 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.991099 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ofzA/info/1ofzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ofzA/nostruct-align/1ofzA.t05-thin90.a2m.gz, have 303987 columns in 1269 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s5uA/nostruct-align/1s5uA.t05-thin90.a2m.gz
# 1s5uA.t05-thin90.a2m with 931 sequences, total weight= 931 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.977107 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s5uA/info/1s5uA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1s5uA/nostruct-align/1s5uA.t05-thin90.a2m.gz, have 304116 columns in 1270 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gs9A/nostruct-align/1gs9A.t05-thin90.a2m.gz
# 1gs9A.t05-thin90.a2m with 77 sequences, total weight= 28.3668 avg weight= 0.3684 41 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gs9A/info/1gs9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gs9A/nostruct-align/1gs9A.t05-thin90.a2m.gz, have 304260 columns in 1271 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pg6A/nostruct-align/1pg6A.t05-thin90.a2m.gz
# 1pg6A.t05-thin90.a2m with 153 sequences, total weight= 110.2 avg weight= 0.720264 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30083 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pg6A/info/1pg6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pg6A/nostruct-align/1pg6A.t05-thin90.a2m.gz, have 304476 columns in 1272 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hqsA/nostruct-align/1hqsA.t05-thin90.a2m.gz
# 1hqsA.t05-thin90.a2m with 758 sequences, total weight= 102.942 avg weight= 0.135807 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30267 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hqsA/info/1hqsA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hqsA/nostruct-align/1hqsA.t05-thin90.a2m.gz, have 304899 columns in 1273 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1ny1A/nostruct-align/1ny1A.t05-thin90.a2m.gz
# 1ny1A.t05-thin90.a2m with 876 sequences, total weight= 876 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.957868 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1ny1A/info/1ny1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1ny1A/nostruct-align/1ny1A.t05-thin90.a2m.gz, have 305134 columns in 1274 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1ntyA/nostruct-align/1ntyA.t05-thin90.a2m.gz
# 1ntyA.t05-thin90.a2m with 1026 sequences, total weight= 1026 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00351 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1ntyA/info/1ntyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1ntyA/nostruct-align/1ntyA.t05-thin90.a2m.gz, have 305439 columns in 1275 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o1yA/nostruct-align/1o1yA.t05-thin90.a2m.gz
# 1o1yA.t05-thin90.a2m with 2654 sequences, total weight= 2654 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.985819 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o1yA/info/1o1yA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o1yA/nostruct-align/1o1yA.t05-thin90.a2m.gz, have 305669 columns in 1276 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hyp/nostruct-align/1hyp.t05-thin90.a2m.gz
# 1hyp.t05-thin90.a2m with 84 sequences, total weight= 6.11079 avg weight= 0.0727475 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hyp/info/1hyp.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hyp/nostruct-align/1hyp.t05-thin90.a2m.gz, have 305744 columns in 1277 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1izcA/nostruct-align/1izcA.t05-thin90.a2m.gz
# 1izcA.t05-thin90.a2m with 1177 sequences, total weight= 1177 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09244 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1izcA/info/1izcA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1izcA/nostruct-align/1izcA.t05-thin90.a2m.gz, have 306043 columns in 1278 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k8uA/nostruct-align/1k8uA.t05-thin90.a2m.gz
# 1k8uA.t05-thin90.a2m with 186 sequences, total weight= 38.2985 avg weight= 0.205906 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k8uA/info/1k8uA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k8uA/nostruct-align/1k8uA.t05-thin90.a2m.gz, have 306132 columns in 1279 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ig0A/nostruct-align/1ig0A.t05-thin90.a2m.gz
# 1ig0A.t05-thin90.a2m with 124 sequences, total weight= 124 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16916 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ig0A/info/1ig0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ig0A/nostruct-align/1ig0A.t05-thin90.a2m.gz, have 306449 columns in 1280 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1ddwA/nostruct-align/1ddwA.t05-thin90.a2m.gz
# 1ddwA.t05-thin90.a2m with 60 sequences, total weight= 12.0141 avg weight= 0.200236 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1ddwA/info/1ddwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1ddwA/nostruct-align/1ddwA.t05-thin90.a2m.gz, have 306560 columns in 1281 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1arb/nostruct-align/1arb.t05-thin90.a2m.gz
# 1arb.t05-thin90.a2m with 909 sequences, total weight= 118.703 avg weight= 0.130587 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30121 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1arb/info/1arb.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1arb/nostruct-align/1arb.t05-thin90.a2m.gz, have 306823 columns in 1282 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fi2A/nostruct-align/1fi2A.t05-thin90.a2m.gz
# 1fi2A.t05-thin90.a2m with 815 sequences, total weight= 815 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.997373 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fi2A/info/1fi2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fi2A/nostruct-align/1fi2A.t05-thin90.a2m.gz, have 307024 columns in 1283 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jyaA/nostruct-align/1jyaA.t05-thin90.a2m.gz
# 1jyaA.t05-thin90.a2m with 5 sequences, total weight= 4.91883 avg weight= 0.983766 10 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jyaA/info/1jyaA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jyaA/nostruct-align/1jyaA.t05-thin90.a2m.gz, have 307141 columns in 1284 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dljA/nostruct-align/1dljA.t05-thin90.a2m.gz
# 1dljA.t05-thin90.a2m with 3204 sequences, total weight= 3204 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01832 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dljA/info/1dljA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dljA/nostruct-align/1dljA.t05-thin90.a2m.gz, have 307543 columns in 1285 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i19A/nostruct-align/1i19A.t05-thin90.a2m.gz
# 1i19A.t05-thin90.a2m with 1404 sequences, total weight= 797.768 avg weight= 0.568211 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30687 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i19A/info/1i19A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i19A/nostruct-align/1i19A.t05-thin90.a2m.gz, have 308084 columns in 1286 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vmeA/nostruct-align/1vmeA.t05-thin90.a2m.gz
# 1vmeA.t05-thin90.a2m with 3349 sequences, total weight= 3349 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.824368 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vmeA/info/1vmeA.stride-mixed.near-backbone-11
WARNING: skipping f, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vmeA/nostruct-align/1vmeA.t05-thin90.a2m.gz, have 308485 columns in 1287 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1go3E/nostruct-align/1go3E.t05-thin90.a2m.gz
# 1go3E.t05-thin90.a2m with 248 sequences, total weight= 248 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19617 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1go3E/info/1go3E.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1go3E/nostruct-align/1go3E.t05-thin90.a2m.gz, have 308662 columns in 1288 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fo8A/nostruct-align/1fo8A.t05-thin90.a2m.gz
# 1fo8A.t05-thin90.a2m with 2657 sequences, total weight= 2657 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.872702 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fo8A/info/1fo8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fo8A/nostruct-align/1fo8A.t05-thin90.a2m.gz, have 308992 columns in 1289 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bdo/nostruct-align/1bdo.t05-thin90.a2m.gz
# 1bdo.t05-thin90.a2m with 682 sequences, total weight= 45.4398 avg weight= 0.0666273 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30157 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bdo/info/1bdo.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bdo/nostruct-align/1bdo.t05-thin90.a2m.gz, have 309072 columns in 1290 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ukkA/nostruct-align/1ukkA.t05-thin90.a2m.gz
# 1ukkA.t05-thin90.a2m with 458 sequences, total weight= 458 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11315 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ukkA/info/1ukkA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ukkA/nostruct-align/1ukkA.t05-thin90.a2m.gz, have 309213 columns in 1291 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m15A/nostruct-align/1m15A.t05-thin90.a2m.gz
# 1m15A.t05-thin90.a2m with 206 sequences, total weight= 23.4857 avg weight= 0.114008 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m15A/info/1m15A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m15A/nostruct-align/1m15A.t05-thin90.a2m.gz, have 309569 columns in 1292 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bkrA/nostruct-align/1bkrA.t05-thin90.a2m.gz
# 1bkrA.t05-thin90.a2m with 317 sequences, total weight= 109.822 avg weight= 0.346442 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30352 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bkrA/info/1bkrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bkrA/nostruct-align/1bkrA.t05-thin90.a2m.gz, have 309677 columns in 1293 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qlwA/nostruct-align/1qlwA.t05-thin90.a2m.gz
# 1qlwA.t05-thin90.a2m with 7555 sequences, total weight= 7555 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.757498 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qlwA/info/1qlwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qlwA/nostruct-align/1qlwA.t05-thin90.a2m.gz, have 309995 columns in 1294 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t6cA/nostruct-align/1t6cA.t05-thin90.a2m.gz
# 1t6cA.t05-thin90.a2m with 1786 sequences, total weight= 1786 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09256 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t6cA/info/1t6cA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t6cA/nostruct-align/1t6cA.t05-thin90.a2m.gz, have 310301 columns in 1295 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o7nA/nostruct-align/1o7nA.t05-thin90.a2m.gz
# 1o7nA.t05-thin90.a2m with 909 sequences, total weight= 909 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.97762 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o7nA/info/1o7nA.stride-mixed.near-backbone-11
WARNING: skipping h, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o7nA/nostruct-align/1o7nA.t05-thin90.a2m.gz, have 310748 columns in 1296 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bx7/nostruct-align/1bx7.t05-thin90.a2m.gz
# 1bx7.t05-thin90.a2m with 5 sequences, total weight= 2.54723 avg weight= 0.509447 14 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bx7/info/1bx7.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bx7/nostruct-align/1bx7.t05-thin90.a2m.gz, have 310799 columns in 1297 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j5xA/nostruct-align/1j5xA.t05-thin90.a2m.gz
# 1j5xA.t05-thin90.a2m with 1132 sequences, total weight= 1132 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13098 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j5xA/info/1j5xA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j5xA/nostruct-align/1j5xA.t05-thin90.a2m.gz, have 311118 columns in 1298 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1elkA/nostruct-align/1elkA.t05-thin90.a2m.gz
# 1elkA.t05-thin90.a2m with 261 sequences, total weight= 261 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27678 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1elkA/info/1elkA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1elkA/nostruct-align/1elkA.t05-thin90.a2m.gz, have 311271 columns in 1299 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1ak0/nostruct-align/1ak0.t05-thin90.a2m.gz
# 1ak0.t05-thin90.a2m with 90 sequences, total weight= 90 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20321 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1ak0/info/1ak0.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1ak0/nostruct-align/1ak0.t05-thin90.a2m.gz, have 311535 columns in 1300 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/25/256bA/nostruct-align/256bA.t05-thin90.a2m.gz
# 256bA.t05-thin90.a2m with 12 sequences, total weight= 9.03788 avg weight= 0.753157 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/25/256bA/info/256bA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/25/256bA/nostruct-align/256bA.t05-thin90.a2m.gz, have 311641 columns in 1301 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r8sA/nostruct-align/1r8sA.t05-thin90.a2m.gz
# 1r8sA.t05-thin90.a2m with 6059 sequences, total weight= 6059 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05526 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r8sA/info/1r8sA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r8sA/nostruct-align/1r8sA.t05-thin90.a2m.gz, have 311801 columns in 1302 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q2hA/nostruct-align/1q2hA.t05-thin90.a2m.gz
# 1q2hA.t05-thin90.a2m with 17 sequences, total weight= 6.68165 avg weight= 0.393038 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q2hA/info/1q2hA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q2hA/nostruct-align/1q2hA.t05-thin90.a2m.gz, have 311864 columns in 1303 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1edg/nostruct-align/1edg.t05-thin90.a2m.gz
# 1edg.t05-thin90.a2m with 1988 sequences, total weight= 1988 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.86731 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1edg/info/1edg.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1edg/nostruct-align/1edg.t05-thin90.a2m.gz, have 312244 columns in 1304 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rgxA/nostruct-align/1rgxA.t05-thin90.a2m.gz
# 1rgxA.t05-thin90.a2m with 16 sequences, total weight= 3.62915 avg weight= 0.226822 20 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rgxA/info/1rgxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rgxA/nostruct-align/1rgxA.t05-thin90.a2m.gz, have 312333 columns in 1305 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cnzA/nostruct-align/1cnzA.t05-thin90.a2m.gz
# 1cnzA.t05-thin90.a2m with 754 sequences, total weight= 60.5921 avg weight= 0.0803609 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30095 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cnzA/info/1cnzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cnzA/nostruct-align/1cnzA.t05-thin90.a2m.gz, have 312696 columns in 1306 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k4nA/nostruct-align/1k4nA.t05-thin90.a2m.gz
# 1k4nA.t05-thin90.a2m with 27 sequences, total weight= 10.8189 avg weight= 0.400699 31 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k4nA/info/1k4nA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k4nA/nostruct-align/1k4nA.t05-thin90.a2m.gz, have 312879 columns in 1307 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gxrA/nostruct-align/1gxrA.t05-thin90.a2m.gz
# 1gxrA.t05-thin90.a2m with 9251 sequences, total weight= 9251 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.761747 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gxrA/info/1gxrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gxrA/nostruct-align/1gxrA.t05-thin90.a2m.gz, have 313214 columns in 1308 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qv9A/nostruct-align/1qv9A.t05-thin90.a2m.gz
# 1qv9A.t05-thin90.a2m with 10 sequences, total weight= 3.4915 avg weight= 0.34915 14 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qv9A/info/1qv9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qv9A/nostruct-align/1qv9A.t05-thin90.a2m.gz, have 313496 columns in 1309 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2d/2dpmA/nostruct-align/2dpmA.t05-thin90.a2m.gz
# 2dpmA.t05-thin90.a2m with 276 sequences, total weight= 276 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09824 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2d/2dpmA/info/2dpmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2d/2dpmA/nostruct-align/2dpmA.t05-thin90.a2m.gz, have 313754 columns in 1310 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o7nB/nostruct-align/1o7nB.t05-thin90.a2m.gz
# 1o7nB.t05-thin90.a2m with 201 sequences, total weight= 201 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19742 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o7nB/info/1o7nB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o7nB/nostruct-align/1o7nB.t05-thin90.a2m.gz, have 313947 columns in 1311 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e42A/nostruct-align/1e42A.t05-thin90.a2m.gz
# 1e42A.t05-thin90.a2m with 38 sequences, total weight= 18.1336 avg weight= 0.4772 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e42A/info/1e42A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e42A/nostruct-align/1e42A.t05-thin90.a2m.gz, have 314180 columns in 1312 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t56A/nostruct-align/1t56A.t05-thin90.a2m.gz
# 1t56A.t05-thin90.a2m with 3679 sequences, total weight= 3679 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.818612 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t56A/info/1t56A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t56A/nostruct-align/1t56A.t05-thin90.a2m.gz, have 314373 columns in 1313 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rwrA/nostruct-align/1rwrA.t05-thin90.a2m.gz
# 1rwrA.t05-thin90.a2m with 91 sequences, total weight= 19.4117 avg weight= 0.213315 42 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rwrA/info/1rwrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rwrA/nostruct-align/1rwrA.t05-thin90.a2m.gz, have 314670 columns in 1314 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oqjA/nostruct-align/1oqjA.t05-thin90.a2m.gz
# 1oqjA.t05-thin90.a2m with 71 sequences, total weight= 22.5273 avg weight= 0.317286 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oqjA/info/1oqjA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oqjA/nostruct-align/1oqjA.t05-thin90.a2m.gz, have 314760 columns in 1315 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lmiA/nostruct-align/1lmiA.t05-thin90.a2m.gz
# 1lmiA.t05-thin90.a2m with 3 sequences, total weight= 3 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17891 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lmiA/info/1lmiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lmiA/nostruct-align/1lmiA.t05-thin90.a2m.gz, have 314891 columns in 1316 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fyeA/nostruct-align/1fyeA.t05-thin90.a2m.gz
# 1fyeA.t05-thin90.a2m with 290 sequences, total weight= 290 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05297 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fyeA/info/1fyeA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fyeA/nostruct-align/1fyeA.t05-thin90.a2m.gz, have 315111 columns in 1317 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gp0A/nostruct-align/1gp0A.t05-thin90.a2m.gz
# 1gp0A.t05-thin90.a2m with 342 sequences, total weight= 342 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27596 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gp0A/info/1gp0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gp0A/nostruct-align/1gp0A.t05-thin90.a2m.gz, have 315244 columns in 1318 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b5pA/nostruct-align/1b5pA.t05-thin90.a2m.gz
# 1b5pA.t05-thin90.a2m with 4909 sequences, total weight= 4909 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.913764 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b5pA/info/1b5pA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1b5pA/nostruct-align/1b5pA.t05-thin90.a2m.gz, have 315626 columns in 1319 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a73A/nostruct-align/1a73A.t05-thin90.a2m.gz
# 1a73A.t05-thin90.a2m with 20 sequences, total weight= 20 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13338 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a73A/info/1a73A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a73A/nostruct-align/1a73A.t05-thin90.a2m.gz, have 315788 columns in 1320 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1no5A/nostruct-align/1no5A.t05-thin90.a2m.gz
# 1no5A.t05-thin90.a2m with 410 sequences, total weight= 410 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0687 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1no5A/info/1no5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1no5A/nostruct-align/1no5A.t05-thin90.a2m.gz, have 315888 columns in 1321 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hfuA/nostruct-align/1hfuA.t05-thin90.a2m.gz
# 1hfuA.t05-thin90.a2m with 844 sequences, total weight= 844 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11336 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hfuA/info/1hfuA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hfuA/nostruct-align/1hfuA.t05-thin90.a2m.gz, have 316388 columns in 1322 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fltX/nostruct-align/1fltX.t05-thin90.a2m.gz
# 1fltX.t05-thin90.a2m with 57 sequences, total weight= 29.8817 avg weight= 0.524241 44 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fltX/info/1fltX.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fltX/nostruct-align/1fltX.t05-thin90.a2m.gz, have 316483 columns in 1323 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oxxK/nostruct-align/1oxxK.t05-thin90.a2m.gz
# 1oxxK.t05-thin90.a2m with 19469 sequences, total weight= 19469 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.996723 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oxxK/info/1oxxK.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1oxxK/nostruct-align/1oxxK.t05-thin90.a2m.gz, have 316835 columns in 1324 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f9yA/nostruct-align/1f9yA.t05-thin90.a2m.gz
# 1f9yA.t05-thin90.a2m with 283 sequences, total weight= 37.9251 avg weight= 0.134011 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30058 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f9yA/info/1f9yA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f9yA/nostruct-align/1f9yA.t05-thin90.a2m.gz, have 316993 columns in 1325 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a6m/nostruct-align/1a6m.t05-thin90.a2m.gz
# 1a6m.t05-thin90.a2m with 843 sequences, total weight= 843 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28848 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a6m/info/1a6m.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1a6m/nostruct-align/1a6m.t05-thin90.a2m.gz, have 317144 columns in 1326 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3e/3ezmA/nostruct-align/3ezmA.t05-thin90.a2m.gz
# 3ezmA.t05-thin90.a2m with 4 sequences, total weight= 3.93864 avg weight= 0.98466 8 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3e/3ezmA/info/3ezmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/3e/3ezmA/nostruct-align/3ezmA.t05-thin90.a2m.gz, have 317245 columns in 1327 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fl0A/nostruct-align/1fl0A.t05-thin90.a2m.gz
# 1fl0A.t05-thin90.a2m with 511 sequences, total weight= 106.723 avg weight= 0.208851 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3036 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fl0A/info/1fl0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fl0A/nostruct-align/1fl0A.t05-thin90.a2m.gz, have 317409 columns in 1328 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lycA/nostruct-align/1lycA.t05-thin90.a2m.gz
# 1lycA.t05-thin90.a2m with 878 sequences, total weight= 124.839 avg weight= 0.142185 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3027 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lycA/info/1lycA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lycA/nostruct-align/1lycA.t05-thin90.a2m.gz, have 317745 columns in 1329 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h05A/nostruct-align/1h05A.t05-thin90.a2m.gz
# 1h05A.t05-thin90.a2m with 208 sequences, total weight= 11.9575 avg weight= 0.0574881 36 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h05A/info/1h05A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h05A/nostruct-align/1h05A.t05-thin90.a2m.gz, have 317883 columns in 1330 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p9hA/nostruct-align/1p9hA.t05-thin90.a2m.gz
# 1p9hA.t05-thin90.a2m with 499 sequences, total weight= 65.8755 avg weight= 0.132015 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p9hA/info/1p9hA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p9hA/nostruct-align/1p9hA.t05-thin90.a2m.gz, have 318062 columns in 1331 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ewfA/nostruct-align/1ewfA.t05-thin90.a2m.gz
# 1ewfA.t05-thin90.a2m with 152 sequences, total weight= 152 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07442 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ewfA/info/1ewfA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ewfA/nostruct-align/1ewfA.t05-thin90.a2m.gz, have 318518 columns in 1332 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r6wA/nostruct-align/1r6wA.t05-thin90.a2m.gz
# 1r6wA.t05-thin90.a2m with 1071 sequences, total weight= 1071 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20476 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r6wA/info/1r6wA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r6wA/nostruct-align/1r6wA.t05-thin90.a2m.gz, have 318839 columns in 1333 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kptA/nostruct-align/1kptA.t05-thin90.a2m.gz
# 1kptA.t05-thin90.a2m with 7 sequences, total weight= 3.89767 avg weight= 0.55681 14 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kptA/info/1kptA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kptA/nostruct-align/1kptA.t05-thin90.a2m.gz, have 318944 columns in 1334 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i0lA/nostruct-align/1i0lA.t05-thin90.a2m.gz
# 1i0lA.t05-thin90.a2m with 1295 sequences, total weight= 1295 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03986 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i0lA/info/1i0lA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i0lA/nostruct-align/1i0lA.t05-thin90.a2m.gz, have 319136 columns in 1335 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mwqA/nostruct-align/1mwqA.t05-thin90.a2m.gz
# 1mwqA.t05-thin90.a2m with 187 sequences, total weight= 96.2895 avg weight= 0.514917 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30124 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mwqA/info/1mwqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mwqA/nostruct-align/1mwqA.t05-thin90.a2m.gz, have 319236 columns in 1336 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nvmB/nostruct-align/1nvmB.t05-thin90.a2m.gz
# 1nvmB.t05-thin90.a2m with 1133 sequences, total weight= 1133 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23087 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nvmB/info/1nvmB.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nvmB/nostruct-align/1nvmB.t05-thin90.a2m.gz, have 319548 columns in 1337 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nox/nostruct-align/1nox.t05-thin90.a2m.gz
# 1nox.t05-thin90.a2m with 916 sequences, total weight= 916 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01273 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nox/info/1nox.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nox/nostruct-align/1nox.t05-thin90.a2m.gz, have 319748 columns in 1338 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1onwA/nostruct-align/1onwA.t05-thin90.a2m.gz
# 1onwA.t05-thin90.a2m with 2216 sequences, total weight= 2216 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.925623 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1onwA/info/1onwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1onwA/nostruct-align/1onwA.t05-thin90.a2m.gz, have 320124 columns in 1339 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1smxA/nostruct-align/1smxA.t05-thin90.a2m.gz
# 1smxA.t05-thin90.a2m with 156 sequences, total weight= 9.12155 avg weight= 0.0584715 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1smxA/info/1smxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1smxA/nostruct-align/1smxA.t05-thin90.a2m.gz, have 320211 columns in 1340 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pqhA/nostruct-align/1pqhA.t05-thin90.a2m.gz
# 1pqhA.t05-thin90.a2m with 104 sequences, total weight= 7.38036 avg weight= 0.070965 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pqhA/info/1pqhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pqhA/nostruct-align/1pqhA.t05-thin90.a2m.gz, have 320330 columns in 1341 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jfuA/nostruct-align/1jfuA.t05-thin90.a2m.gz
# 1jfuA.t05-thin90.a2m with 4251 sequences, total weight= 4251 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.874825 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jfuA/info/1jfuA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jfuA/nostruct-align/1jfuA.t05-thin90.a2m.gz, have 320506 columns in 1342 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ijqA/nostruct-align/1ijqA.t05-thin90.a2m.gz
# 1ijqA.t05-thin90.a2m with 1580 sequences, total weight= 1580 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.956728 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ijqA/info/1ijqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ijqA/nostruct-align/1ijqA.t05-thin90.a2m.gz, have 320814 columns in 1343 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1snyA/nostruct-align/1snyA.t05-thin90.a2m.gz
# 1snyA.t05-thin90.a2m with 9368 sequences, total weight= 9368 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10169 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1snyA/info/1snyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1snyA/nostruct-align/1snyA.t05-thin90.a2m.gz, have 321062 columns in 1344 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fs1B/nostruct-align/1fs1B.t05-thin90.a2m.gz
# 1fs1B.t05-thin90.a2m with 182 sequences, total weight= 43.6422 avg weight= 0.239793 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fs1B/info/1fs1B.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1fs1B/nostruct-align/1fs1B.t05-thin90.a2m.gz, have 321178 columns in 1345 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jl1A/nostruct-align/1jl1A.t05-thin90.a2m.gz
# 1jl1A.t05-thin90.a2m with 764 sequences, total weight= 764 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21004 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jl1A/info/1jl1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jl1A/nostruct-align/1jl1A.t05-thin90.a2m.gz, have 321330 columns in 1346 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jpzA/nostruct-align/1jpzA.t05-thin90.a2m.gz
# 1jpzA.t05-thin90.a2m with 4576 sequences, total weight= 4576 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01101 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jpzA/info/1jpzA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jpzA/nostruct-align/1jpzA.t05-thin90.a2m.gz, have 321786 columns in 1347 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x6oA/nostruct-align/1x6oA.t05-thin90.a2m.gz
# 1x6oA.t05-thin90.a2m with 96 sequences, total weight= 17.2906 avg weight= 0.18011 33 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x6oA/info/1x6oA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1x/1x6oA/nostruct-align/1x6oA.t05-thin90.a2m.gz, have 321929 columns in 1348 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2t/2tnfA/nostruct-align/2tnfA.t05-thin90.a2m.gz
# 2tnfA.t05-thin90.a2m with 168 sequences, total weight= 136.283 avg weight= 0.811207 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30072 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2t/2tnfA/info/2tnfA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2t/2tnfA/nostruct-align/2tnfA.t05-thin90.a2m.gz, have 322077 columns in 1349 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d4xG/nostruct-align/1d4xG.t05-thin90.a2m.gz
# 1d4xG.t05-thin90.a2m with 552 sequences, total weight= 552 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12425 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d4xG/info/1d4xG.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d4xG/nostruct-align/1d4xG.t05-thin90.a2m.gz, have 322201 columns in 1350 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hm9A/nostruct-align/1hm9A.t05-thin90.a2m.gz
# 1hm9A.t05-thin90.a2m with 3474 sequences, total weight= 3474 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03227 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hm9A/info/1hm9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hm9A/nostruct-align/1hm9A.t05-thin90.a2m.gz, have 322659 columns in 1351 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1orrA/nostruct-align/1orrA.t05-thin90.a2m.gz
# 1orrA.t05-thin90.a2m with 10768 sequences, total weight= 10768 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.889364 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1orrA/info/1orrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1orrA/nostruct-align/1orrA.t05-thin90.a2m.gz, have 322997 columns in 1352 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gqnA/nostruct-align/1gqnA.t05-thin90.a2m.gz
# 1gqnA.t05-thin90.a2m with 121 sequences, total weight= 121 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27204 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gqnA/info/1gqnA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gqnA/nostruct-align/1gqnA.t05-thin90.a2m.gz, have 323249 columns in 1353 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rtqA/nostruct-align/1rtqA.t05-thin90.a2m.gz
# 1rtqA.t05-thin90.a2m with 2296 sequences, total weight= 2296 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.87975 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rtqA/info/1rtqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rtqA/nostruct-align/1rtqA.t05-thin90.a2m.gz, have 323540 columns in 1354 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cy5A/nostruct-align/1cy5A.t05-thin90.a2m.gz
# 1cy5A.t05-thin90.a2m with 10 sequences, total weight= 3.45596 avg weight= 0.345596 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cy5A/info/1cy5A.stride-mixed.near-backbone-11
WARNING: skipping f, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cy5A/nostruct-align/1cy5A.t05-thin90.a2m.gz, have 323632 columns in 1355 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1azo/nostruct-align/1azo.t05-thin90.a2m.gz
# 1azo.t05-thin90.a2m with 43 sequences, total weight= 33.2028 avg weight= 0.772157 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1azo/info/1azo.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1a/1azo/nostruct-align/1azo.t05-thin90.a2m.gz, have 323846 columns in 1356 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m4lA/nostruct-align/1m4lA.t05-thin90.a2m.gz
# 1m4lA.t05-thin90.a2m with 668 sequences, total weight= 668 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08262 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m4lA/info/1m4lA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1m4lA/nostruct-align/1m4lA.t05-thin90.a2m.gz, have 324153 columns in 1357 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r2mA/nostruct-align/1r2mA.t05-thin90.a2m.gz
# 1r2mA.t05-thin90.a2m with 19 sequences, total weight= 4.10319 avg weight= 0.215957 23 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r2mA/info/1r2mA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r2mA/nostruct-align/1r2mA.t05-thin90.a2m.gz, have 324223 columns in 1358 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g6sA/nostruct-align/1g6sA.t05-thin90.a2m.gz
# 1g6sA.t05-thin90.a2m with 598 sequences, total weight= 110.327 avg weight= 0.184494 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30528 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g6sA/info/1g6sA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g6sA/nostruct-align/1g6sA.t05-thin90.a2m.gz, have 324650 columns in 1359 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j79A/nostruct-align/1j79A.t05-thin90.a2m.gz
# 1j79A.t05-thin90.a2m with 644 sequences, total weight= 644 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19056 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j79A/info/1j79A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j79A/nostruct-align/1j79A.t05-thin90.a2m.gz, have 324993 columns in 1360 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gu7A/nostruct-align/1gu7A.t05-thin90.a2m.gz
# 1gu7A.t05-thin90.a2m with 3698 sequences, total weight= 3698 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08652 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gu7A/info/1gu7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gu7A/nostruct-align/1gu7A.t05-thin90.a2m.gz, have 325357 columns in 1361 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ryaA/nostruct-align/1ryaA.t05-thin90.a2m.gz
# 1ryaA.t05-thin90.a2m with 2619 sequences, total weight= 2619 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.845022 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ryaA/info/1ryaA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1ryaA/nostruct-align/1ryaA.t05-thin90.a2m.gz, have 325517 columns in 1362 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rkqA/nostruct-align/1rkqA.t05-thin90.a2m.gz
# 1rkqA.t05-thin90.a2m with 3343 sequences, total weight= 3343 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.973284 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rkqA/info/1rkqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rkqA/nostruct-align/1rkqA.t05-thin90.a2m.gz, have 325788 columns in 1363 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e29A/nostruct-align/1e29A.t05-thin90.a2m.gz
# 1e29A.t05-thin90.a2m with 483 sequences, total weight= 483 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10301 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e29A/info/1e29A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e29A/nostruct-align/1e29A.t05-thin90.a2m.gz, have 325923 columns in 1364 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k3iA/nostruct-align/1k3iA.t05-thin90.a2m.gz
# 1k3iA.t05-thin90.a2m with 1899 sequences, total weight= 1899 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15587 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k3iA/info/1k3iA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k3iA/nostruct-align/1k3iA.t05-thin90.a2m.gz, have 326574 columns in 1365 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g2nA/nostruct-align/1g2nA.t05-thin90.a2m.gz
# 1g2nA.t05-thin90.a2m with 1158 sequences, total weight= 1158 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.876705 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g2nA/info/1g2nA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g2nA/nostruct-align/1g2nA.t05-thin90.a2m.gz, have 326820 columns in 1366 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qddA/nostruct-align/1qddA.t05-thin90.a2m.gz
# 1qddA.t05-thin90.a2m with 2302 sequences, total weight= 2302 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.963674 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qddA/info/1qddA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qddA/nostruct-align/1qddA.t05-thin90.a2m.gz, have 326964 columns in 1367 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jo8A/nostruct-align/1jo8A.t05-thin90.a2m.gz
# 1jo8A.t05-thin90.a2m with 1510 sequences, total weight= 146.671 avg weight= 0.0971334 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32808 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jo8A/info/1jo8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jo8A/nostruct-align/1jo8A.t05-thin90.a2m.gz, have 327022 columns in 1368 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2c/2cuaA/nostruct-align/2cuaA.t05-thin90.a2m.gz
# 2cuaA.t05-thin90.a2m with 961 sequences, total weight= 186.391 avg weight= 0.193956 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31187 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2c/2cuaA/info/2cuaA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2c/2cuaA/nostruct-align/2cuaA.t05-thin90.a2m.gz, have 327144 columns in 1369 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h80A/nostruct-align/1h80A.t05-thin90.a2m.gz
# 1h80A.t05-thin90.a2m with 753 sequences, total weight= 753 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.987334 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h80A/info/1h80A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h80A/nostruct-align/1h80A.t05-thin90.a2m.gz, have 327577 columns in 1370 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sqsA/nostruct-align/1sqsA.t05-thin90.a2m.gz
# 1sqsA.t05-thin90.a2m with 1306 sequences, total weight= 1306 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.949113 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sqsA/info/1sqsA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sqsA/nostruct-align/1sqsA.t05-thin90.a2m.gz, have 327809 columns in 1371 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ix9A/nostruct-align/1ix9A.t05-thin90.a2m.gz
# 1ix9A.t05-thin90.a2m with 671 sequences, total weight= 37.2736 avg weight= 0.0555493 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ix9A/info/1ix9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ix9A/nostruct-align/1ix9A.t05-thin90.a2m.gz, have 328014 columns in 1372 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i4jA/nostruct-align/1i4jA.t05-thin90.a2m.gz
# 1i4jA.t05-thin90.a2m with 367 sequences, total weight= 59.0839 avg weight= 0.160992 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30045 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i4jA/info/1i4jA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i4jA/nostruct-align/1i4jA.t05-thin90.a2m.gz, have 328124 columns in 1373 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ornA/nostruct-align/1ornA.t05-thin90.a2m.gz
# 1ornA.t05-thin90.a2m with 870 sequences, total weight= 870 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15981 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ornA/info/1ornA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ornA/nostruct-align/1ornA.t05-thin90.a2m.gz, have 328338 columns in 1374 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o5kA/nostruct-align/1o5kA.t05-thin90.a2m.gz
# 1o5kA.t05-thin90.a2m with 663 sequences, total weight= 663 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27317 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o5kA/info/1o5kA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o5kA/nostruct-align/1o5kA.t05-thin90.a2m.gz, have 328633 columns in 1375 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e87A/nostruct-align/1e87A.t05-thin90.a2m.gz
# 1e87A.t05-thin90.a2m with 2197 sequences, total weight= 2197 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08203 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e87A/info/1e87A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e87A/nostruct-align/1e87A.t05-thin90.a2m.gz, have 328750 columns in 1376 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kjqA/nostruct-align/1kjqA.t05-thin90.a2m.gz
# 1kjqA.t05-thin90.a2m with 2813 sequences, total weight= 2813 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04206 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kjqA/info/1kjqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kjqA/nostruct-align/1kjqA.t05-thin90.a2m.gz, have 329138 columns in 1377 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jsdA/nostruct-align/1jsdA.t05-thin90.a2m.gz
# 1jsdA.t05-thin90.a2m with 158 sequences, total weight= 10.7363 avg weight= 0.067951 29 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jsdA/info/1jsdA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jsdA/nostruct-align/1jsdA.t05-thin90.a2m.gz, have 329455 columns in 1378 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tif/nostruct-align/1tif.t05-thin90.a2m.gz
# 1tif.t05-thin90.a2m with 233 sequences, total weight= 11.2843 avg weight= 0.0484306 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tif/info/1tif.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tif/nostruct-align/1tif.t05-thin90.a2m.gz, have 329531 columns in 1379 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dqpA/nostruct-align/1dqpA.t05-thin90.a2m.gz
# 1dqpA.t05-thin90.a2m with 2043 sequences, total weight= 2043 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03742 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dqpA/info/1dqpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1dqpA/nostruct-align/1dqpA.t05-thin90.a2m.gz, have 329761 columns in 1380 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qveA/nostruct-align/1qveA.t05-thin90.a2m.gz
# 1qveA.t05-thin90.a2m with 215 sequences, total weight= 58.2564 avg weight= 0.27096 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30036 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qveA/info/1qveA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qveA/nostruct-align/1qveA.t05-thin90.a2m.gz, have 329887 columns in 1381 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ubkS/nostruct-align/1ubkS.t05-thin90.a2m.gz
# 1ubkS.t05-thin90.a2m with 393 sequences, total weight= 104.253 avg weight= 0.265275 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30153 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ubkS/info/1ubkS.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ubkS/nostruct-align/1ubkS.t05-thin90.a2m.gz, have 330154 columns in 1382 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t2dA/nostruct-align/1t2dA.t05-thin90.a2m.gz
# 1t2dA.t05-thin90.a2m with 1065 sequences, total weight= 1065 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11733 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t2dA/info/1t2dA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1t2dA/nostruct-align/1t2dA.t05-thin90.a2m.gz, have 330469 columns in 1383 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2a/2a0b/nostruct-align/2a0b.t05-thin90.a2m.gz
# 2a0b.t05-thin90.a2m with 25 sequences, total weight= 13.3809 avg weight= 0.535236 28 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2a/2a0b/info/2a0b.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/2a/2a0b/nostruct-align/2a0b.t05-thin90.a2m.gz, have 330587 columns in 1384 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cczA/nostruct-align/1cczA.t05-thin90.a2m.gz
# 1cczA.t05-thin90.a2m with 10557 sequences, total weight= 10557 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.94408 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cczA/info/1cczA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1c/1cczA/nostruct-align/1cczA.t05-thin90.a2m.gz, have 330758 columns in 1385 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p0zA/nostruct-align/1p0zA.t05-thin90.a2m.gz
# 1p0zA.t05-thin90.a2m with 72 sequences, total weight= 26.8767 avg weight= 0.373287 43 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p0zA/info/1p0zA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1p0zA/nostruct-align/1p0zA.t05-thin90.a2m.gz, have 330889 columns in 1386 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1urrA/nostruct-align/1urrA.t05-thin90.a2m.gz
# 1urrA.t05-thin90.a2m with 286 sequences, total weight= 57.7349 avg weight= 0.20187 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30204 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1urrA/info/1urrA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1urrA/nostruct-align/1urrA.t05-thin90.a2m.gz, have 330986 columns in 1387 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o4yA/nostruct-align/1o4yA.t05-thin90.a2m.gz
# 1o4yA.t05-thin90.a2m with 498 sequences, total weight= 498 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09692 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o4yA/info/1o4yA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o4yA/nostruct-align/1o4yA.t05-thin90.a2m.gz, have 331256 columns in 1388 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1guqA/nostruct-align/1guqA.t05-thin90.a2m.gz
# 1guqA.t05-thin90.a2m with 609 sequences, total weight= 609 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24707 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1guqA/info/1guqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1guqA/nostruct-align/1guqA.t05-thin90.a2m.gz, have 331603 columns in 1389 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1ju3A/nostruct-align/1ju3A.t05-thin90.a2m.gz
# 1ju3A.t05-thin90.a2m with 9690 sequences, total weight= 9690 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.862196 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1ju3A/info/1ju3A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1ju3A/nostruct-align/1ju3A.t05-thin90.a2m.gz, have 332173 columns in 1390 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b8oA/nostruct-align/1b8oA.t05-thin90.a2m.gz
# 1b8oA.t05-thin90.a2m with 709 sequences, total weight= 709 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08312 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b8oA/info/1b8oA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1b8oA/nostruct-align/1b8oA.t05-thin90.a2m.gz, have 332453 columns in 1391 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lzlA/nostruct-align/1lzlA.t05-thin90.a2m.gz
# 1lzlA.t05-thin90.a2m with 5218 sequences, total weight= 5218 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.833145 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lzlA/info/1lzlA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lzlA/nostruct-align/1lzlA.t05-thin90.a2m.gz, have 332770 columns in 1392 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vcaA/nostruct-align/1vcaA.t05-thin90.a2m.gz
# 1vcaA.t05-thin90.a2m with 10029 sequences, total weight= 10029 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.864146 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vcaA/info/1vcaA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vcaA/nostruct-align/1vcaA.t05-thin90.a2m.gz, have 332969 columns in 1393 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q6oA/nostruct-align/1q6oA.t05-thin90.a2m.gz
# 1q6oA.t05-thin90.a2m with 1254 sequences, total weight= 1254 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05322 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q6oA/info/1q6oA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q6oA/nostruct-align/1q6oA.t05-thin90.a2m.gz, have 333182 columns in 1394 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qq9A/nostruct-align/1qq9A.t05-thin90.a2m.gz
# 1qq9A.t05-thin90.a2m with 2287 sequences, total weight= 2287 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.908902 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qq9A/info/1qq9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1qq9A/nostruct-align/1qq9A.t05-thin90.a2m.gz, have 333459 columns in 1395 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jo0A/nostruct-align/1jo0A.t05-thin90.a2m.gz
# 1jo0A.t05-thin90.a2m with 115 sequences, total weight= 19.3214 avg weight= 0.168012 42 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jo0A/info/1jo0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jo0A/nostruct-align/1jo0A.t05-thin90.a2m.gz, have 333556 columns in 1396 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sqeA/nostruct-align/1sqeA.t05-thin90.a2m.gz
# 1sqeA.t05-thin90.a2m with 165 sequences, total weight= 165 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08819 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sqeA/info/1sqeA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sqeA/nostruct-align/1sqeA.t05-thin90.a2m.gz, have 333657 columns in 1397 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jb3A/nostruct-align/1jb3A.t05-thin90.a2m.gz
# 1jb3A.t05-thin90.a2m with 9 sequences, total weight= 4.01042 avg weight= 0.445602 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jb3A/info/1jb3A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jb3A/nostruct-align/1jb3A.t05-thin90.a2m.gz, have 333784 columns in 1398 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uasA/nostruct-align/1uasA.t05-thin90.a2m.gz
# 1uasA.t05-thin90.a2m with 385 sequences, total weight= 385 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.994455 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uasA/info/1uasA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1uasA/nostruct-align/1uasA.t05-thin90.a2m.gz, have 334146 columns in 1399 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hyvA/nostruct-align/1hyvA.t05-thin90.a2m.gz
# 1hyvA.t05-thin90.a2m with 258 sequences, total weight= 77.3535 avg weight= 0.29982 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30087 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hyvA/info/1hyvA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hyvA/nostruct-align/1hyvA.t05-thin90.a2m.gz, have 334290 columns in 1400 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhqA/nostruct-align/1vhqA.t05-thin90.a2m.gz
# 1vhqA.t05-thin90.a2m with 719 sequences, total weight= 719 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20932 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhqA/info/1vhqA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vhqA/nostruct-align/1vhqA.t05-thin90.a2m.gz, have 334507 columns in 1401 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e43A/nostruct-align/1e43A.t05-thin90.a2m.gz
# 1e43A.t05-thin90.a2m with 1831 sequences, total weight= 1831 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03866 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e43A/info/1e43A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e43A/nostruct-align/1e43A.t05-thin90.a2m.gz, have 334990 columns in 1402 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nkpA/nostruct-align/1nkpA.t05-thin90.a2m.gz
# 1nkpA.t05-thin90.a2m with 172 sequences, total weight= 50.8201 avg weight= 0.295466 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30064 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nkpA/info/1nkpA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nkpA/nostruct-align/1nkpA.t05-thin90.a2m.gz, have 335078 columns in 1403 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iw0A/nostruct-align/1iw0A.t05-thin90.a2m.gz
# 1iw0A.t05-thin90.a2m with 158 sequences, total weight= 158 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20645 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iw0A/info/1iw0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1iw0A/nostruct-align/1iw0A.t05-thin90.a2m.gz, have 335285 columns in 1404 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o6sB/nostruct-align/1o6sB.t05-thin90.a2m.gz
# 1o6sB.t05-thin90.a2m with 5584 sequences, total weight= 5584 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22567 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o6sB/info/1o6sB.stride-mixed.near-backbone-11
WARNING: skipping a, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1o/1o6sB/nostruct-align/1o6sB.t05-thin90.a2m.gz, have 335389 columns in 1405 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g8kA/nostruct-align/1g8kA.t05-thin90.a2m.gz
# 1g8kA.t05-thin90.a2m with 1165 sequences, total weight= 1165 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11483 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g8kA/info/1g8kA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g8kA/nostruct-align/1g8kA.t05-thin90.a2m.gz, have 336211 columns in 1406 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tuaA/nostruct-align/1tuaA.t05-thin90.a2m.gz
# 1tuaA.t05-thin90.a2m with 114 sequences, total weight= 33.2667 avg weight= 0.291813 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tuaA/info/1tuaA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1t/1tuaA/nostruct-align/1tuaA.t05-thin90.a2m.gz, have 336400 columns in 1407 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r26A/nostruct-align/1r26A.t05-thin90.a2m.gz
# 1r26A.t05-thin90.a2m with 3122 sequences, total weight= 3122 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02042 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r26A/info/1r26A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r26A/nostruct-align/1r26A.t05-thin90.a2m.gz, have 336513 columns in 1408 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mugA/nostruct-align/1mugA.t05-thin90.a2m.gz
# 1mugA.t05-thin90.a2m with 373 sequences, total weight= 373 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19619 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mugA/info/1mugA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mugA/nostruct-align/1mugA.t05-thin90.a2m.gz, have 336678 columns in 1409 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bgf/nostruct-align/1bgf.t05-thin90.a2m.gz
# 1bgf.t05-thin90.a2m with 56 sequences, total weight= 21.1712 avg weight= 0.378057 38 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bgf/info/1bgf.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bgf/nostruct-align/1bgf.t05-thin90.a2m.gz, have 336802 columns in 1410 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vioA/nostruct-align/1vioA.t05-thin90.a2m.gz
# 1vioA.t05-thin90.a2m with 1292 sequences, total weight= 1181.83 avg weight= 0.914727 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30239 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vioA/info/1vioA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vioA/nostruct-align/1vioA.t05-thin90.a2m.gz, have 337032 columns in 1411 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nf9A/nostruct-align/1nf9A.t05-thin90.a2m.gz
# 1nf9A.t05-thin90.a2m with 736 sequences, total weight= 736 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08859 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nf9A/info/1nf9A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nf9A/nostruct-align/1nf9A.t05-thin90.a2m.gz, have 337239 columns in 1412 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ugiA/nostruct-align/1ugiA.t05-thin90.a2m.gz
# 1ugiA.t05-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.584933 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ugiA/info/1ugiA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1u/1ugiA/nostruct-align/1ugiA.t05-thin90.a2m.gz, have 337322 columns in 1413 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eu1A/nostruct-align/1eu1A.t05-thin90.a2m.gz
# 1eu1A.t05-thin90.a2m with 1138 sequences, total weight= 1138 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14148 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eu1A/info/1eu1A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1eu1A/nostruct-align/1eu1A.t05-thin90.a2m.gz, have 338089 columns in 1414 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kr7A/nostruct-align/1kr7A.t05-thin90.a2m.gz
# 1kr7A.t05-thin90.a2m with 5 sequences, total weight= 3.76694 avg weight= 0.753387 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kr7A/info/1kr7A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kr7A/nostruct-align/1kr7A.t05-thin90.a2m.gz, have 338199 columns in 1415 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hx6A/nostruct-align/1hx6A.t05-thin90.a2m.gz
# 1hx6A.t05-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.583138 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hx6A/info/1hx6A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hx6A/nostruct-align/1hx6A.t05-thin90.a2m.gz, have 338569 columns in 1416 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sw5A/nostruct-align/1sw5A.t05-thin90.a2m.gz
# 1sw5A.t05-thin90.a2m with 378 sequences, total weight= 378 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21214 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sw5A/info/1sw5A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sw5A/nostruct-align/1sw5A.t05-thin90.a2m.gz, have 338839 columns in 1417 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mqkL/nostruct-align/1mqkL.t05-thin90.a2m.gz
# 1mqkL.t05-thin90.a2m with 10627 sequences, total weight= 23.5576 avg weight= 0.00221677 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mqkL/info/1mqkL.stride-mixed.near-backbone-11
WARNING: skipping d, since it is lower case.
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mqkL/nostruct-align/1mqkL.t05-thin90.a2m.gz, have 338947 columns in 1418 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1szhA/nostruct-align/1szhA.t05-thin90.a2m.gz
# 1szhA.t05-thin90.a2m with 5 sequences, total weight= 3.58609 avg weight= 0.717219 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1szhA/info/1szhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1szhA/nostruct-align/1szhA.t05-thin90.a2m.gz, have 339094 columns in 1419 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i60A/nostruct-align/1i60A.t05-thin90.a2m.gz
# 1i60A.t05-thin90.a2m with 1035 sequences, total weight= 1035 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.875422 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i60A/info/1i60A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i60A/nostruct-align/1i60A.t05-thin90.a2m.gz, have 339372 columns in 1420 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i12A/nostruct-align/1i12A.t05-thin90.a2m.gz
# 1i12A.t05-thin90.a2m with 5796 sequences, total weight= 5796 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.737455 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i12A/info/1i12A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1i12A/nostruct-align/1i12A.t05-thin90.a2m.gz, have 339526 columns in 1421 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kkoA/nostruct-align/1kkoA.t05-thin90.a2m.gz
# 1kkoA.t05-thin90.a2m with 1086 sequences, total weight= 1086 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20302 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kkoA/info/1kkoA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kkoA/nostruct-align/1kkoA.t05-thin90.a2m.gz, have 339937 columns in 1422 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lqaA/nostruct-align/1lqaA.t05-thin90.a2m.gz
# 1lqaA.t05-thin90.a2m with 2003 sequences, total weight= 2003 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24108 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lqaA/info/1lqaA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lqaA/nostruct-align/1lqaA.t05-thin90.a2m.gz, have 340283 columns in 1423 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pcfA/nostruct-align/1pcfA.t05-thin90.a2m.gz
# 1pcfA.t05-thin90.a2m with 43 sequences, total weight= 11.6757 avg weight= 0.271527 35 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pcfA/info/1pcfA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1p/1pcfA/nostruct-align/1pcfA.t05-thin90.a2m.gz, have 340349 columns in 1424 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r4pA/nostruct-align/1r4pA.t05-thin90.a2m.gz
# 1r4pA.t05-thin90.a2m with 148 sequences, total weight= 148 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18408 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r4pA/info/1r4pA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r4pA/nostruct-align/1r4pA.t05-thin90.a2m.gz, have 340630 columns in 1425 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sqgA/nostruct-align/1sqgA.t05-thin90.a2m.gz
# 1sqgA.t05-thin90.a2m with 3953 sequences, total weight= 3953 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.914526 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sqgA/info/1sqgA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sqgA/nostruct-align/1sqgA.t05-thin90.a2m.gz, have 341054 columns in 1426 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h4xA/nostruct-align/1h4xA.t05-thin90.a2m.gz
# 1h4xA.t05-thin90.a2m with 435 sequences, total weight= 435 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08431 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h4xA/info/1h4xA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1h4xA/nostruct-align/1h4xA.t05-thin90.a2m.gz, have 341165 columns in 1427 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3e/3eipA/nostruct-align/3eipA.t05-thin90.a2m.gz
# 3eipA.t05-thin90.a2m with 7 sequences, total weight= 2.32939 avg weight= 0.33277 11 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3e/3eipA/info/3eipA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/3e/3eipA/nostruct-align/3eipA.t05-thin90.a2m.gz, have 341249 columns in 1428 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k94A/nostruct-align/1k94A.t05-thin90.a2m.gz
# 1k94A.t05-thin90.a2m with 2065 sequences, total weight= 2065 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.991443 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k94A/info/1k94A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1k94A/nostruct-align/1k94A.t05-thin90.a2m.gz, have 341414 columns in 1429 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r62A/nostruct-align/1r62A.t05-thin90.a2m.gz
# 1r62A.t05-thin90.a2m with 6555 sequences, total weight= 6555 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18742 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r62A/info/1r62A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1r62A/nostruct-align/1r62A.t05-thin90.a2m.gz, have 341550 columns in 1430 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ihjA/nostruct-align/1ihjA.t05-thin90.a2m.gz
# 1ihjA.t05-thin90.a2m with 1603 sequences, total weight= 1603 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25034 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ihjA/info/1ihjA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1i/1ihjA/nostruct-align/1ihjA.t05-thin90.a2m.gz, have 341644 columns in 1431 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nofA/nostruct-align/1nofA.t05-thin90.a2m.gz
# 1nofA.t05-thin90.a2m with 295 sequences, total weight= 295 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.895682 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nofA/info/1nofA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1n/1nofA/nostruct-align/1nofA.t05-thin90.a2m.gz, have 342027 columns in 1432 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g3p/nostruct-align/1g3p.t05-thin90.a2m.gz
# 1g3p.t05-thin90.a2m with 2412 sequences, total weight= 469.978 avg weight= 0.19485 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32828 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g3p/info/1g3p.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1g3p/nostruct-align/1g3p.t05-thin90.a2m.gz, have 342219 columns in 1433 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vdwA/nostruct-align/1vdwA.t05-thin90.a2m.gz
# 1vdwA.t05-thin90.a2m with 927 sequences, total weight= 927 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19382 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vdwA/info/1vdwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1vdwA/nostruct-align/1vdwA.t05-thin90.a2m.gz, have 342467 columns in 1434 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q1fA/nostruct-align/1q1fA.t05-thin90.a2m.gz
# 1q1fA.t05-thin90.a2m with 998 sequences, total weight= 998 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18304 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q1fA/info/1q1fA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1q/1q1fA/nostruct-align/1q1fA.t05-thin90.a2m.gz, have 342615 columns in 1435 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jakA/nostruct-align/1jakA.t05-thin90.a2m.gz
# 1jakA.t05-thin90.a2m with 296 sequences, total weight= 296 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05883 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jakA/info/1jakA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jakA/nostruct-align/1jakA.t05-thin90.a2m.gz, have 343114 columns in 1436 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1ju2A/nostruct-align/1ju2A.t05-thin90.a2m.gz
# 1ju2A.t05-thin90.a2m with 4618 sequences, total weight= 4618 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.790225 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1ju2A/info/1ju2A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1ju2A/nostruct-align/1ju2A.t05-thin90.a2m.gz, have 343635 columns in 1437 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1orc/nostruct-align/1orc.t05-thin90.a2m.gz
# 1orc.t05-thin90.a2m with 5 sequences, total weight= 3.58842 avg weight= 0.717684 12 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1orc/info/1orc.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1orc/nostruct-align/1orc.t05-thin90.a2m.gz, have 343699 columns in 1438 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mhnA/nostruct-align/1mhnA.t05-thin90.a2m.gz
# 1mhnA.t05-thin90.a2m with 56 sequences, total weight= 18.8781 avg weight= 0.33711 40 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mhnA/info/1mhnA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1m/1mhnA/nostruct-align/1mhnA.t05-thin90.a2m.gz, have 343758 columns in 1439 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d2sA/nostruct-align/1d2sA.t05-thin90.a2m.gz
# 1d2sA.t05-thin90.a2m with 1230 sequences, total weight= 1230 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.993382 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d2sA/info/1d2sA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d2sA/nostruct-align/1d2sA.t05-thin90.a2m.gz, have 343928 columns in 1440 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v7zA/nostruct-align/1v7zA.t05-thin90.a2m.gz
# 1v7zA.t05-thin90.a2m with 104 sequences, total weight= 93.294 avg weight= 0.897058 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v7zA/info/1v7zA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1v/1v7zA/nostruct-align/1v7zA.t05-thin90.a2m.gz, have 344185 columns in 1441 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ok0A/nostruct-align/1ok0A.t05-thin90.a2m.gz
# 1ok0A.t05-thin90.a2m with 8 sequences, total weight= 3.99964 avg weight= 0.499954 17 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ok0A/info/1ok0A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1o/1ok0A/nostruct-align/1ok0A.t05-thin90.a2m.gz, have 344259 columns in 1442 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jixA/nostruct-align/1jixA.t05-thin90.a2m.gz
# 1jixA.t05-thin90.a2m with 90 sequences, total weight= 90 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.997285 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jixA/info/1jixA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1jixA/nostruct-align/1jixA.t05-thin90.a2m.gz, have 344610 columns in 1443 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e4cP/nostruct-align/1e4cP.t05-thin90.a2m.gz
# 1e4cP.t05-thin90.a2m with 480 sequences, total weight= 480 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18919 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e4cP/info/1e4cP.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1e4cP/nostruct-align/1e4cP.t05-thin90.a2m.gz, have 344816 columns in 1444 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ezwA/nostruct-align/1ezwA.t05-thin90.a2m.gz
# 1ezwA.t05-thin90.a2m with 1007 sequences, total weight= 1007 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11969 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ezwA/info/1ezwA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1e/1ezwA/nostruct-align/1ezwA.t05-thin90.a2m.gz, have 345163 columns in 1445 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f94A/nostruct-align/1f94A.t05-thin90.a2m.gz
# 1f94A.t05-thin90.a2m with 2 sequences, total weight= 1.94772 avg weight= 0.973858 6 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f94A/info/1f94A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f94A/nostruct-align/1f94A.t05-thin90.a2m.gz, have 345226 columns in 1446 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kr4A/nostruct-align/1kr4A.t05-thin90.a2m.gz
# 1kr4A.t05-thin90.a2m with 139 sequences, total weight= 24.5173 avg weight= 0.176383 46 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kr4A/info/1kr4A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kr4A/nostruct-align/1kr4A.t05-thin90.a2m.gz, have 345336 columns in 1447 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ryoA/nostruct-align/1ryoA.t05-thin90.a2m.gz
# 1ryoA.t05-thin90.a2m with 282 sequences, total weight= 84.3208 avg weight= 0.29901 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30076 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ryoA/info/1ryoA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1ryoA/nostruct-align/1ryoA.t05-thin90.a2m.gz, have 345660 columns in 1448 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kxoA/nostruct-align/1kxoA.t05-thin90.a2m.gz
# 1kxoA.t05-thin90.a2m with 478 sequences, total weight= 478 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.957724 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kxoA/info/1kxoA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1k/1kxoA/nostruct-align/1kxoA.t05-thin90.a2m.gz, have 345825 columns in 1449 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bu8A/nostruct-align/1bu8A.t05-thin90.a2m.gz
# 1bu8A.t05-thin90.a2m with 5391 sequences, total weight= 5391 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0823 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bu8A/info/1bu8A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1b/1bu8A/nostruct-align/1bu8A.t05-thin90.a2m.gz, have 346271 columns in 1450 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lvmA/nostruct-align/1lvmA.t05-thin90.a2m.gz
# 1lvmA.t05-thin90.a2m with 366 sequences, total weight= 366 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06302 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lvmA/info/1lvmA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1l/1lvmA/nostruct-align/1lvmA.t05-thin90.a2m.gz, have 346500 columns in 1451 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gwyA/nostruct-align/1gwyA.t05-thin90.a2m.gz
# 1gwyA.t05-thin90.a2m with 19 sequences, total weight= 9.01131 avg weight= 0.474279 21 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gwyA/info/1gwyA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1g/1gwyA/nostruct-align/1gwyA.t05-thin90.a2m.gz, have 346675 columns in 1452 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j24A/nostruct-align/1j24A.t05-thin90.a2m.gz
# 1j24A.t05-thin90.a2m with 135 sequences, total weight= 84.1435 avg weight= 0.623285 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30094 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j24A/info/1j24A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1j/1j24A/nostruct-align/1j24A.t05-thin90.a2m.gz, have 346808 columns in 1453 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sfxA/nostruct-align/1sfxA.t05-thin90.a2m.gz
# 1sfxA.t05-thin90.a2m with 68 sequences, total weight= 68 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2686 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sfxA/info/1sfxA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1s/1sfxA/nostruct-align/1sfxA.t05-thin90.a2m.gz, have 346917 columns in 1454 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rhcA/nostruct-align/1rhcA.t05-thin90.a2m.gz
# 1rhcA.t05-thin90.a2m with 1008 sequences, total weight= 1008 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10032 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rhcA/info/1rhcA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1r/1rhcA/nostruct-align/1rhcA.t05-thin90.a2m.gz, have 347247 columns in 1455 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hxhA/nostruct-align/1hxhA.t05-thin90.a2m.gz
# 1hxhA.t05-thin90.a2m with 9248 sequences, total weight= 9248 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12742 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hxhA/info/1hxhA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1h/1hxhA/nostruct-align/1hxhA.t05-thin90.a2m.gz, have 347500 columns in 1456 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f32A/nostruct-align/1f32A.t05-thin90.a2m.gz
# 1f32A.t05-thin90.a2m with 16 sequences, total weight= 8.48816 avg weight= 0.53051 22 iterations
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f32A/info/1f32A.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1f/1f32A/nostruct-align/1f32A.t05-thin90.a2m.gz, have 347627 columns in 1457 chains
# Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d5tA/nostruct-align/1d5tA.t05-thin90.a2m.gz
# 1d5tA.t05-thin90.a2m with 8255 sequences, total weight= 8255 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.904742 bits.
# Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d5tA/info/1d5tA.stride-mixed.near-backbone-11
# After reading /projects/compbio/experiments/models.97/pdb/1d/1d5tA/nostruct-align/1d5tA.t05-thin90.a2m.gz, have 348060 columns in 1458 chains
# command:CPU_time= 8893.37 sec, elapsed time= 8931.93 sec)
# command:# ReportNetQualityForTestTo quality-reports/dunbrack-30pc-1763-t05-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-near-backbone-11-from-empty-for-casp.test ok.
# command:# Testing net dunbrack-30pc-1763-t05-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-near-backbone-11-from-empty.net
# Initializing Gain for near-backbone-11
# Initializing Gain for third_layer
# Initializing Gain for second_layer
# Initializing Gain for FirstLayer
# Network initialization done
# command:CPU_time= 9011.7 sec, elapsed time= 9050.36 sec)
# command: