# command:# Prefix for input files set to # command:# Prefix for output files set to # command:# Seed set to 1185030368 # command:# Read 5 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/two-spot-burial.alphabet # command:Unrecognized 1th alphabet rel_sa10 for BackgroundProbs that has no name Unrecognized 1th alphabet CB_burial_12_7 for BackgroundProbs that has no name Unrecognized 1th alphabet CB_burial_14_7 for BackgroundProbs that has no name Unrecognized 1th alphabet abs_sa7 for BackgroundProbs that has no name Unrecognized 1th alphabet alpha11 for BackgroundProbs that has no name Unrecognized 1th alphabet Bystroff for BackgroundProbs that has no name Unrecognized 1th alphabet chi1_3 for BackgroundProbs that has no name Unrecognized 1th alphabet dry_burial_6.5_7 for BackgroundProbs that has no name Unrecognized 1th alphabet dry_burial_8_7 for BackgroundProbs that has no name Unrecognized 1th alphabet dry_burial_12_7 for BackgroundProbs that has no name Unrecognized 1th alphabet DSSP for BackgroundProbs that has no name Unrecognized 1th alphabet EBGHSTL for BackgroundProbs that has no name Unrecognized 1th alphabet str for BackgroundProbs that has no name Unrecognized 1th alphabet str2 for BackgroundProbs that has no name Unrecognized 1th alphabet dssp_ehl2 for BackgroundProbs that has no name Unrecognized 1th alphabet STRIDE for BackgroundProbs that has no name Unrecognized 1th alphabet EBGHTL for BackgroundProbs that has no name Unrecognized 1th alphabet stride_ehl2 for BackgroundProbs that has no name Unrecognized 1th alphabet tco for BackgroundProbs that has no name Unrecognized 1th alphabet wet_burial_6.5_7 for BackgroundProbs that has no name Unrecognized 1th alphabet pb for BackgroundProbs that has no name Unrecognized 1th alphabet gamma_2 for BackgroundProbs that has no name Unrecognized 1th alphabet n_sep for BackgroundProbs that has no name Unrecognized 1th alphabet o_sep for BackgroundProbs that has no name Unrecognized 1th alphabet n_notor for BackgroundProbs that has no name Unrecognized 1th alphabet o_notor for BackgroundProbs that has no name Unrecognized 1th alphabet n_notor2 for BackgroundProbs that has no name Unrecognized 1th alphabet o_notor2 for BackgroundProbs that has no name Unrecognized 1th alphabet CB8-sep9 for BackgroundProbs that has no name # Read 0 alphabets and 3 BackgroundProbs from /projects/compbio/lib/alphabet/dunbrack-in-scop.backgrounds # command:# Neural network set to IDGaaH13-3-13-7-13-9-13-11-near-backbone-11-empty.net # command:# Neural network set to dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-near-backbone-11-from-empty.net # command:# Learning params read from /projects/compbio/experiments/protein-predict/predict-2nd/testing/params/7-jul-05.params # command:# Initializing Weights for near-backbone-11 # Initializing Bias for near-backbone-11 # Initializing Gain for near-backbone-11 # Initializing Weights for third_layer # Initializing Bias for third_layer # Initializing Gain for third_layer # Initializing Weights for second_layer # Initializing Bias for second_layer # Initializing Gain for second_layer # Initializing Weights for FirstLayer # Initializing Bias for FirstLayer # Initializing Gain for FirstLayer # Network initialization done # command:CPU_time= 0.006999 sec, elapsed time= 0.716194 sec) # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/predict-2nd/testing/training-data/ # command:# reading script from file dunbrack-30pc-1763-3.t04-thin90-near-backbone-11 # Prefix for input files set to # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/4u/4ubpA/nostruct-align/4ubpA.t04-thin90.a2m.gz # 4ubpA.t04-thin90.a2m with 80 sequences, total weight= 5.08261 avg weight= 0.0635327 23 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/4u/4ubpA/info/4ubpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/4u/4ubpA/nostruct-align/4ubpA.t04-thin90.a2m.gz, have 100 columns in 1 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kngA/nostruct-align/1kngA.t04-thin90.a2m.gz # 1kngA.t04-thin90.a2m with 2286 sequences, total weight= 2286 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.989005 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kngA/info/1kngA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kngA/nostruct-align/1kngA.t04-thin90.a2m.gz, have 244 columns in 2 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jnrA/nostruct-align/1jnrA.t04-thin90.a2m.gz # 1jnrA.t04-thin90.a2m with 2126 sequences, total weight= 2126 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.93791 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jnrA/info/1jnrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jnrA/nostruct-align/1jnrA.t04-thin90.a2m.gz, have 886 columns in 3 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yc5A/nostruct-align/1yc5A.t04-thin90.a2m.gz # 1yc5A.t04-thin90.a2m with 400 sequences, total weight= 400 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25987 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yc5A/info/1yc5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1yc5A/nostruct-align/1yc5A.t04-thin90.a2m.gz, have 1120 columns in 4 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w2wB/nostruct-align/1w2wB.t04-thin90.a2m.gz # 1w2wB.t04-thin90.a2m with 191 sequences, total weight= 111.932 avg weight= 0.586032 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30113 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w2wB/info/1w2wB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w2wB/nostruct-align/1w2wB.t04-thin90.a2m.gz, have 1311 columns in 5 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o3uA/nostruct-align/1o3uA.t04-thin90.a2m.gz # 1o3uA.t04-thin90.a2m with 76 sequences, total weight= 76 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2297 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o3uA/info/1o3uA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o3uA/nostruct-align/1o3uA.t04-thin90.a2m.gz, have 1431 columns in 6 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e19A/nostruct-align/1e19A.t04-thin90.a2m.gz # 1e19A.t04-thin90.a2m with 658 sequences, total weight= 658 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17428 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e19A/info/1e19A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e19A/nostruct-align/1e19A.t04-thin90.a2m.gz, have 1744 columns in 7 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1z/1z8kA/nostruct-align/1z8kA.t04-thin90.a2m.gz # 1z8kA.t04-thin90.a2m with 11 sequences, total weight= 2.50949 avg weight= 0.228136 13 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1z/1z8kA/info/1z8kA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1z/1z8kA/nostruct-align/1z8kA.t04-thin90.a2m.gz, have 1918 columns in 8 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mtpA/nostruct-align/1mtpA.t04-thin90.a2m.gz # 1mtpA.t04-thin90.a2m with 443 sequences, total weight= 432.009 avg weight= 0.97519 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30043 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mtpA/info/1mtpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mtpA/nostruct-align/1mtpA.t04-thin90.a2m.gz, have 2238 columns in 9 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ijyA/nostruct-align/1ijyA.t04-thin90.a2m.gz # 1ijyA.t04-thin90.a2m with 81 sequences, total weight= 30.8018 avg weight= 0.380269 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ijyA/info/1ijyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1ijyA/nostruct-align/1ijyA.t04-thin90.a2m.gz, have 2360 columns in 10 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pg4A/nostruct-align/1pg4A.t04-thin90.a2m.gz # 1pg4A.t04-thin90.a2m with 2777 sequences, total weight= 2777 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14405 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pg4A/info/1pg4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pg4A/nostruct-align/1pg4A.t04-thin90.a2m.gz, have 2993 columns in 11 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f5nA/nostruct-align/1f5nA.t04-thin90.a2m.gz # 1f5nA.t04-thin90.a2m with 1437 sequences, total weight= 1437 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.958443 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f5nA/info/1f5nA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f5nA/nostruct-align/1f5nA.t04-thin90.a2m.gz, have 3563 columns in 12 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b5eA/nostruct-align/1b5eA.t04-thin90.a2m.gz # 1b5eA.t04-thin90.a2m with 186 sequences, total weight= 45.8493 avg weight= 0.246502 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b5eA/info/1b5eA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1b5eA/nostruct-align/1b5eA.t04-thin90.a2m.gz, have 3804 columns in 13 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gy7A/nostruct-align/1gy7A.t04-thin90.a2m.gz # 1gy7A.t04-thin90.a2m with 87 sequences, total weight= 54.8041 avg weight= 0.629933 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gy7A/info/1gy7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gy7A/nostruct-align/1gy7A.t04-thin90.a2m.gz, have 3925 columns in 14 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a3aA/nostruct-align/1a3aA.t04-thin90.a2m.gz # 1a3aA.t04-thin90.a2m with 360 sequences, total weight= 360 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22209 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a3aA/info/1a3aA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1a3aA/nostruct-align/1a3aA.t04-thin90.a2m.gz, have 4070 columns in 15 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w1oA/nostruct-align/1w1oA.t04-thin90.a2m.gz # 1w1oA.t04-thin90.a2m with 1087 sequences, total weight= 1087 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.867741 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w1oA/info/1w1oA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w1oA/nostruct-align/1w1oA.t04-thin90.a2m.gz, have 4549 columns in 16 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gvdA/nostruct-align/1gvdA.t04-thin90.a2m.gz # 1gvdA.t04-thin90.a2m with 663 sequences, total weight= 36.6513 avg weight= 0.0552809 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30035 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gvdA/info/1gvdA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gvdA/nostruct-align/1gvdA.t04-thin90.a2m.gz, have 4601 columns in 17 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uj2A/nostruct-align/1uj2A.t04-thin90.a2m.gz # 1uj2A.t04-thin90.a2m with 1916 sequences, total weight= 1916 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.801691 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uj2A/info/1uj2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uj2A/nostruct-align/1uj2A.t04-thin90.a2m.gz, have 4814 columns in 18 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l7aA/nostruct-align/1l7aA.t04-thin90.a2m.gz # 1l7aA.t04-thin90.a2m with 2319 sequences, total weight= 2319 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.791668 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l7aA/info/1l7aA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1l7aA/nostruct-align/1l7aA.t04-thin90.a2m.gz, have 5132 columns in 19 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kmtA/nostruct-align/1kmtA.t04-thin90.a2m.gz # 1kmtA.t04-thin90.a2m with 38 sequences, total weight= 13.98 avg weight= 0.367895 31 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kmtA/info/1kmtA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kmtA/nostruct-align/1kmtA.t04-thin90.a2m.gz, have 5270 columns in 20 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bkxA/nostruct-align/2bkxA.t04-thin90.a2m.gz # 2bkxA.t04-thin90.a2m with 327 sequences, total weight= 141.839 avg weight= 0.433759 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30467 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bkxA/info/2bkxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2b/2bkxA/nostruct-align/2bkxA.t04-thin90.a2m.gz, have 5512 columns in 21 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1ji1A/nostruct-align/1ji1A.t04-thin90.a2m.gz # 1ji1A.t04-thin90.a2m with 1329 sequences, total weight= 1329 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01809 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1ji1A/info/1ji1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1ji1A/nostruct-align/1ji1A.t04-thin90.a2m.gz, have 6149 columns in 22 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1luqA/nostruct-align/1luqA.t04-thin90.a2m.gz # 1luqA.t04-thin90.a2m with 10 sequences, total weight= 6.78549 avg weight= 0.678549 17 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1luqA/info/1luqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1luqA/nostruct-align/1luqA.t04-thin90.a2m.gz, have 6268 columns in 23 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h2wA/nostruct-align/1h2wA.t04-thin90.a2m.gz # 1h2wA.t04-thin90.a2m with 2238 sequences, total weight= 2238 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.87231 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h2wA/info/1h2wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h2wA/nostruct-align/1h2wA.t04-thin90.a2m.gz, have 6978 columns in 24 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wvfA/nostruct-align/1wvfA.t04-thin90.a2m.gz # 1wvfA.t04-thin90.a2m with 1240 sequences, total weight= 1240 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.868591 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wvfA/info/1wvfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wvfA/nostruct-align/1wvfA.t04-thin90.a2m.gz, have 7493 columns in 25 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h2bA/nostruct-align/1h2bA.t04-thin90.a2m.gz # 1h2bA.t04-thin90.a2m with 1864 sequences, total weight= 1864 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26919 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h2bA/info/1h2bA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h2bA/nostruct-align/1h2bA.t04-thin90.a2m.gz, have 7836 columns in 26 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bupA/nostruct-align/1bupA.t04-thin90.a2m.gz # 1bupA.t04-thin90.a2m with 1003 sequences, total weight= 1003 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28732 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bupA/info/1bupA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1bupA/nostruct-align/1bupA.t04-thin90.a2m.gz, have 8214 columns in 27 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lm4A/nostruct-align/1lm4A.t04-thin90.a2m.gz # 1lm4A.t04-thin90.a2m with 232 sequences, total weight= 53.3508 avg weight= 0.22996 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30083 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lm4A/info/1lm4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lm4A/nostruct-align/1lm4A.t04-thin90.a2m.gz, have 8404 columns in 28 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gsoA/nostruct-align/1gsoA.t04-thin90.a2m.gz # 1gsoA.t04-thin90.a2m with 1821 sequences, total weight= 1821 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0239 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gsoA/info/1gsoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gsoA/nostruct-align/1gsoA.t04-thin90.a2m.gz, have 8823 columns in 29 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d0cA/nostruct-align/1d0cA.t04-thin90.a2m.gz # 1d0cA.t04-thin90.a2m with 37 sequences, total weight= 6.01388 avg weight= 0.162537 25 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d0cA/info/1d0cA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d0cA/nostruct-align/1d0cA.t04-thin90.a2m.gz, have 9239 columns in 30 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oaa/nostruct-align/1oaa.t04-thin90.a2m.gz # 1oaa.t04-thin90.a2m with 2399 sequences, total weight= 158.376 avg weight= 0.0660177 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32929 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oaa/info/1oaa.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oaa/nostruct-align/1oaa.t04-thin90.a2m.gz, have 9498 columns in 31 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gq6A/nostruct-align/1gq6A.t04-thin90.a2m.gz # 1gq6A.t04-thin90.a2m with 248 sequences, total weight= 248 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25683 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gq6A/info/1gq6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gq6A/nostruct-align/1gq6A.t04-thin90.a2m.gz, have 9793 columns in 32 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ubkL/nostruct-align/1ubkL.t04-thin90.a2m.gz # 1ubkL.t04-thin90.a2m with 361 sequences, total weight= 361 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29493 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ubkL/info/1ubkL.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ubkL/nostruct-align/1ubkL.t04-thin90.a2m.gz, have 10327 columns in 33 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uekA/nostruct-align/1uekA.t04-thin90.a2m.gz # 1uekA.t04-thin90.a2m with 601 sequences, total weight= 601 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.986992 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uekA/info/1uekA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uekA/nostruct-align/1uekA.t04-thin90.a2m.gz, have 10595 columns in 34 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wdvA/nostruct-align/1wdvA.t04-thin90.a2m.gz # 1wdvA.t04-thin90.a2m with 335 sequences, total weight= 335 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22167 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wdvA/info/1wdvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wdvA/nostruct-align/1wdvA.t04-thin90.a2m.gz, have 10745 columns in 35 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kjlA/nostruct-align/1kjlA.t04-thin90.a2m.gz # 1kjlA.t04-thin90.a2m with 313 sequences, total weight= 291.904 avg weight= 0.932601 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30069 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kjlA/info/1kjlA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kjlA/nostruct-align/1kjlA.t04-thin90.a2m.gz, have 10883 columns in 36 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g2rA/nostruct-align/1g2rA.t04-thin90.a2m.gz # 1g2rA.t04-thin90.a2m with 71 sequences, total weight= 44.4458 avg weight= 0.625997 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g2rA/info/1g2rA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g2rA/nostruct-align/1g2rA.t04-thin90.a2m.gz, have 10977 columns in 37 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s7kA/nostruct-align/1s7kA.t04-thin90.a2m.gz # 1s7kA.t04-thin90.a2m with 2299 sequences, total weight= 2299 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.90441 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s7kA/info/1s7kA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1s7kA/nostruct-align/1s7kA.t04-thin90.a2m.gz, have 11135 columns in 38 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g5tA/nostruct-align/1g5tA.t04-thin90.a2m.gz # 1g5tA.t04-thin90.a2m with 114 sequences, total weight= 16.4793 avg weight= 0.144555 39 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g5tA/info/1g5tA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g5tA/nostruct-align/1g5tA.t04-thin90.a2m.gz, have 11292 columns in 39 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e0tA/nostruct-align/1e0tA.t04-thin90.a2m.gz # 1e0tA.t04-thin90.a2m with 302 sequences, total weight= 28.8697 avg weight= 0.0955951 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e0tA/info/1e0tA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e0tA/nostruct-align/1e0tA.t04-thin90.a2m.gz, have 11738 columns in 40 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p0hA/nostruct-align/1p0hA.t04-thin90.a2m.gz # 1p0hA.t04-thin90.a2m with 2418 sequences, total weight= 2418 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.899321 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p0hA/info/1p0hA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p0hA/nostruct-align/1p0hA.t04-thin90.a2m.gz, have 12028 columns in 41 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1molA/nostruct-align/1molA.t04-thin90.a2m.gz # 1molA.t04-thin90.a2m with 3 sequences, total weight= 2.67173 avg weight= 0.890578 6 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1molA/info/1molA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1molA/nostruct-align/1molA.t04-thin90.a2m.gz, have 12122 columns in 42 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1osyA/nostruct-align/1osyA.t04-thin90.a2m.gz # 1osyA.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18111 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1osyA/info/1osyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1osyA/nostruct-align/1osyA.t04-thin90.a2m.gz, have 12236 columns in 43 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sbp/nostruct-align/1sbp.t04-thin90.a2m.gz # 1sbp.t04-thin90.a2m with 1408 sequences, total weight= 1408 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.82784 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sbp/info/1sbp.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sbp/nostruct-align/1sbp.t04-thin90.a2m.gz, have 12545 columns in 44 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pvgA/nostruct-align/1pvgA.t04-thin90.a2m.gz # 1pvgA.t04-thin90.a2m with 729 sequences, total weight= 187.701 avg weight= 0.257477 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30808 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pvgA/info/1pvgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pvgA/nostruct-align/1pvgA.t04-thin90.a2m.gz, have 12923 columns in 45 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1st9A/nostruct-align/1st9A.t04-thin90.a2m.gz # 1st9A.t04-thin90.a2m with 2280 sequences, total weight= 2280 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03284 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1st9A/info/1st9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1st9A/nostruct-align/1st9A.t04-thin90.a2m.gz, have 13060 columns in 46 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f1eA/nostruct-align/1f1eA.t04-thin90.a2m.gz # 1f1eA.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.601427 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f1eA/info/1f1eA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f1eA/nostruct-align/1f1eA.t04-thin90.a2m.gz, have 13211 columns in 47 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ikpA/nostruct-align/1ikpA.t04-thin90.a2m.gz # 1ikpA.t04-thin90.a2m with 700 sequences, total weight= 21.1674 avg weight= 0.0302392 23 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ikpA/info/1ikpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1ikpA/nostruct-align/1ikpA.t04-thin90.a2m.gz, have 13810 columns in 48 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1swxA/nostruct-align/1swxA.t04-thin90.a2m.gz # 1swxA.t04-thin90.a2m with 65 sequences, total weight= 45.3679 avg weight= 0.697967 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1swxA/info/1swxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1swxA/nostruct-align/1swxA.t04-thin90.a2m.gz, have 14008 columns in 49 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uozA/nostruct-align/1uozA.t04-thin90.a2m.gz # 1uozA.t04-thin90.a2m with 75 sequences, total weight= 18.3494 avg weight= 0.244658 36 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uozA/info/1uozA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uozA/nostruct-align/1uozA.t04-thin90.a2m.gz, have 14308 columns in 50 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1id0A/nostruct-align/1id0A.t04-thin90.a2m.gz # 1id0A.t04-thin90.a2m with 2423 sequences, total weight= 106.16 avg weight= 0.0438136 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.33118 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1id0A/info/1id0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1id0A/nostruct-align/1id0A.t04-thin90.a2m.gz, have 14454 columns in 51 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2m/2mcm/nostruct-align/2mcm.t04-thin90.a2m.gz # 2mcm.t04-thin90.a2m with 5 sequences, total weight= 3.566 avg weight= 0.7132 13 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2m/2mcm/info/2mcm.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2m/2mcm/nostruct-align/2mcm.t04-thin90.a2m.gz, have 14566 columns in 52 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a12A/nostruct-align/1a12A.t04-thin90.a2m.gz # 1a12A.t04-thin90.a2m with 322 sequences, total weight= 322 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.971297 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a12A/info/1a12A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1a12A/nostruct-align/1a12A.t04-thin90.a2m.gz, have 14967 columns in 53 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k2xA/nostruct-align/1k2xA.t04-thin90.a2m.gz # 1k2xA.t04-thin90.a2m with 89 sequences, total weight= 28.7892 avg weight= 0.323475 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k2xA/info/1k2xA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k2xA/nostruct-align/1k2xA.t04-thin90.a2m.gz, have 15123 columns in 54 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jp4A/nostruct-align/1jp4A.t04-thin90.a2m.gz # 1jp4A.t04-thin90.a2m with 547 sequences, total weight= 547 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11293 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jp4A/info/1jp4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jp4A/nostruct-align/1jp4A.t04-thin90.a2m.gz, have 15425 columns in 55 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sjyA/nostruct-align/1sjyA.t04-thin90.a2m.gz # 1sjyA.t04-thin90.a2m with 1660 sequences, total weight= 1660 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.81292 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sjyA/info/1sjyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sjyA/nostruct-align/1sjyA.t04-thin90.a2m.gz, have 15579 columns in 56 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nu4A/nostruct-align/1nu4A.t04-thin90.a2m.gz # 1nu4A.t04-thin90.a2m with 2434 sequences, total weight= 2434 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18044 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nu4A/info/1nu4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nu4A/nostruct-align/1nu4A.t04-thin90.a2m.gz, have 15670 columns in 57 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j77A/nostruct-align/1j77A.t04-thin90.a2m.gz # 1j77A.t04-thin90.a2m with 91 sequences, total weight= 91 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26267 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j77A/info/1j77A.stride-mixed.near-backbone-11 WARNING: skipping f, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1j/1j77A/nostruct-align/1j77A.t04-thin90.a2m.gz, have 15869 columns in 58 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1btkA/nostruct-align/1btkA.t04-thin90.a2m.gz # 1btkA.t04-thin90.a2m with 92 sequences, total weight= 92 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18793 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1btkA/info/1btkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1btkA/nostruct-align/1btkA.t04-thin90.a2m.gz, have 16029 columns in 59 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kq1A/nostruct-align/1kq1A.t04-thin90.a2m.gz # 1kq1A.t04-thin90.a2m with 36 sequences, total weight= 5.15459 avg weight= 0.143183 22 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kq1A/info/1kq1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kq1A/nostruct-align/1kq1A.t04-thin90.a2m.gz, have 16089 columns in 60 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1ktgA/nostruct-align/1ktgA.t04-thin90.a2m.gz # 1ktgA.t04-thin90.a2m with 1577 sequences, total weight= 1577 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.8871 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1ktgA/info/1ktgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1ktgA/nostruct-align/1ktgA.t04-thin90.a2m.gz, have 16226 columns in 61 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ockA/nostruct-align/1ockA.t04-thin90.a2m.gz # 1ockA.t04-thin90.a2m with 619 sequences, total weight= 216.449 avg weight= 0.349675 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31171 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ockA/info/1ockA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ockA/nostruct-align/1ockA.t04-thin90.a2m.gz, have 16638 columns in 62 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nkgA/nostruct-align/1nkgA.t04-thin90.a2m.gz # 1nkgA.t04-thin90.a2m with 33 sequences, total weight= 16.8176 avg weight= 0.509624 26 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nkgA/info/1nkgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nkgA/nostruct-align/1nkgA.t04-thin90.a2m.gz, have 17146 columns in 63 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y80A/nostruct-align/1y80A.t04-thin90.a2m.gz # 1y80A.t04-thin90.a2m with 297 sequences, total weight= 71.6952 avg weight= 0.241398 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30124 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y80A/info/1y80A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1y80A/nostruct-align/1y80A.t04-thin90.a2m.gz, have 17271 columns in 64 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f60B/nostruct-align/1f60B.t04-thin90.a2m.gz # 1f60B.t04-thin90.a2m with 47 sequences, total weight= 6.47895 avg weight= 0.13785 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f60B/info/1f60B.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f60B/nostruct-align/1f60B.t04-thin90.a2m.gz, have 17361 columns in 65 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vcc/nostruct-align/1vcc.t04-thin90.a2m.gz # 1vcc.t04-thin90.a2m with 13 sequences, total weight= 4.10853 avg weight= 0.31604 16 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vcc/info/1vcc.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vcc/nostruct-align/1vcc.t04-thin90.a2m.gz, have 17438 columns in 66 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k3yA/nostruct-align/1k3yA.t04-thin90.a2m.gz # 1k3yA.t04-thin90.a2m with 1756 sequences, total weight= 1756 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.98857 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k3yA/info/1k3yA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k3yA/nostruct-align/1k3yA.t04-thin90.a2m.gz, have 17659 columns in 67 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l6pA/nostruct-align/1l6pA.t04-thin90.a2m.gz # 1l6pA.t04-thin90.a2m with 47 sequences, total weight= 18.658 avg weight= 0.39698 40 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l6pA/info/1l6pA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1l6pA/nostruct-align/1l6pA.t04-thin90.a2m.gz, have 17780 columns in 68 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3n/3nul/nostruct-align/3nul.t04-thin90.a2m.gz # 3nul.t04-thin90.a2m with 96 sequences, total weight= 30.6355 avg weight= 0.31912 45 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3n/3nul/info/3nul.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/3n/3nul/nostruct-align/3nul.t04-thin90.a2m.gz, have 17910 columns in 69 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f2tB/nostruct-align/1f2tB.t04-thin90.a2m.gz # 1f2tB.t04-thin90.a2m with 2234 sequences, total weight= 25.4042 avg weight= 0.0113716 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f2tB/info/1f2tB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f2tB/nostruct-align/1f2tB.t04-thin90.a2m.gz, have 18053 columns in 70 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u8vA/nostruct-align/1u8vA.t04-thin90.a2m.gz # 1u8vA.t04-thin90.a2m with 1860 sequences, total weight= 1860 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04856 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u8vA/info/1u8vA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1u8vA/nostruct-align/1u8vA.t04-thin90.a2m.gz, have 18543 columns in 71 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qj4A/nostruct-align/1qj4A.t04-thin90.a2m.gz # 1qj4A.t04-thin90.a2m with 2366 sequences, total weight= 2366 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.790038 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qj4A/info/1qj4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qj4A/nostruct-align/1qj4A.t04-thin90.a2m.gz, have 18799 columns in 72 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r5mA/nostruct-align/1r5mA.t04-thin90.a2m.gz # 1r5mA.t04-thin90.a2m with 1886 sequences, total weight= 1886 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27275 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r5mA/info/1r5mA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r5mA/nostruct-align/1r5mA.t04-thin90.a2m.gz, have 19150 columns in 73 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o8bA/nostruct-align/1o8bA.t04-thin90.a2m.gz # 1o8bA.t04-thin90.a2m with 145 sequences, total weight= 15.9004 avg weight= 0.109658 40 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o8bA/info/1o8bA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o8bA/nostruct-align/1o8bA.t04-thin90.a2m.gz, have 19318 columns in 74 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fg7A/nostruct-align/1fg7A.t04-thin90.a2m.gz # 1fg7A.t04-thin90.a2m with 2127 sequences, total weight= 2127 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05158 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fg7A/info/1fg7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fg7A/nostruct-align/1fg7A.t04-thin90.a2m.gz, have 19672 columns in 75 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x7dA/nostruct-align/1x7dA.t04-thin90.a2m.gz # 1x7dA.t04-thin90.a2m with 1230 sequences, total weight= 1230 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.923153 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x7dA/info/1x7dA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1x7dA/nostruct-align/1x7dA.t04-thin90.a2m.gz, have 20012 columns in 76 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j2rA/nostruct-align/1j2rA.t04-thin90.a2m.gz # 1j2rA.t04-thin90.a2m with 480 sequences, total weight= 480 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11329 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j2rA/info/1j2rA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j2rA/nostruct-align/1j2rA.t04-thin90.a2m.gz, have 20200 columns in 77 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pbyA/nostruct-align/1pbyA.t04-thin90.a2m.gz # 1pbyA.t04-thin90.a2m with 4 sequences, total weight= 3.71504 avg weight= 0.92876 11 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pbyA/info/1pbyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pbyA/nostruct-align/1pbyA.t04-thin90.a2m.gz, have 20689 columns in 78 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k5cA/nostruct-align/1k5cA.t04-thin90.a2m.gz # 1k5cA.t04-thin90.a2m with 318 sequences, total weight= 318 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28915 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k5cA/info/1k5cA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k5cA/nostruct-align/1k5cA.t04-thin90.a2m.gz, have 21022 columns in 79 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dj0A/nostruct-align/1dj0A.t04-thin90.a2m.gz # 1dj0A.t04-thin90.a2m with 238 sequences, total weight= 84.4166 avg weight= 0.354692 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30277 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dj0A/info/1dj0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dj0A/nostruct-align/1dj0A.t04-thin90.a2m.gz, have 21286 columns in 80 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wpnA/nostruct-align/1wpnA.t04-thin90.a2m.gz # 1wpnA.t04-thin90.a2m with 283 sequences, total weight= 283 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14232 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wpnA/info/1wpnA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wpnA/nostruct-align/1wpnA.t04-thin90.a2m.gz, have 21473 columns in 81 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q25A/nostruct-align/1q25A.t04-thin90.a2m.gz # 1q25A.t04-thin90.a2m with 132 sequences, total weight= 132 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28331 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q25A/info/1q25A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q25A/nostruct-align/1q25A.t04-thin90.a2m.gz, have 21901 columns in 82 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sz7A/nostruct-align/1sz7A.t04-thin90.a2m.gz # 1sz7A.t04-thin90.a2m with 102 sequences, total weight= 66.2638 avg weight= 0.649645 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sz7A/info/1sz7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sz7A/nostruct-align/1sz7A.t04-thin90.a2m.gz, have 22060 columns in 83 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hztA/nostruct-align/1hztA.t04-thin90.a2m.gz # 1hztA.t04-thin90.a2m with 1540 sequences, total weight= 1540 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.851125 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hztA/info/1hztA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hztA/nostruct-align/1hztA.t04-thin90.a2m.gz, have 22213 columns in 84 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qopB/nostruct-align/1qopB.t04-thin90.a2m.gz # 1qopB.t04-thin90.a2m with 1089 sequences, total weight= 1089 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13689 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qopB/info/1qopB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qopB/nostruct-align/1qopB.t04-thin90.a2m.gz, have 22603 columns in 85 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l3lA/nostruct-align/1l3lA.t04-thin90.a2m.gz # 1l3lA.t04-thin90.a2m with 2264 sequences, total weight= 2264 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.970116 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l3lA/info/1l3lA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1l3lA/nostruct-align/1l3lA.t04-thin90.a2m.gz, have 22836 columns in 86 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ohlA/nostruct-align/1ohlA.t04-thin90.a2m.gz # 1ohlA.t04-thin90.a2m with 172 sequences, total weight= 9.90418 avg weight= 0.0575824 32 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ohlA/info/1ohlA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ohlA/nostruct-align/1ohlA.t04-thin90.a2m.gz, have 23176 columns in 87 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oygA/nostruct-align/1oygA.t04-thin90.a2m.gz # 1oygA.t04-thin90.a2m with 33 sequences, total weight= 20.665 avg weight= 0.626212 30 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oygA/info/1oygA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oygA/nostruct-align/1oygA.t04-thin90.a2m.gz, have 23616 columns in 88 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1khcA/nostruct-align/1khcA.t04-thin90.a2m.gz # 1khcA.t04-thin90.a2m with 100 sequences, total weight= 100 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01718 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1khcA/info/1khcA.stride-mixed.near-backbone-11 WARNING: skipping f, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1k/1khcA/nostruct-align/1khcA.t04-thin90.a2m.gz, have 23751 columns in 89 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ugpA/nostruct-align/1ugpA.t04-thin90.a2m.gz # 1ugpA.t04-thin90.a2m with 29 sequences, total weight= 7.26113 avg weight= 0.250384 22 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ugpA/info/1ugpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ugpA/nostruct-align/1ugpA.t04-thin90.a2m.gz, have 23954 columns in 90 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rmwA/nostruct-align/1rmwA.t04-thin90.a2m.gz # 1rmwA.t04-thin90.a2m with 147 sequences, total weight= 147 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24733 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rmwA/info/1rmwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rmwA/nostruct-align/1rmwA.t04-thin90.a2m.gz, have 24165 columns in 91 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m93B/nostruct-align/1m93B.t04-thin90.a2m.gz # 1m93B.t04-thin90.a2m with 412 sequences, total weight= 214.207 avg weight= 0.519921 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30685 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m93B/info/1m93B.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m93B/nostruct-align/1m93B.t04-thin90.a2m.gz, have 24410 columns in 92 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vr7A/nostruct-align/1vr7A.t04-thin90.a2m.gz # 1vr7A.t04-thin90.a2m with 77 sequences, total weight= 21.1261 avg weight= 0.274364 43 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vr7A/info/1vr7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vr7A/nostruct-align/1vr7A.t04-thin90.a2m.gz, have 24530 columns in 93 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1ve1A/nostruct-align/1ve1A.t04-thin90.a2m.gz # 1ve1A.t04-thin90.a2m with 1501 sequences, total weight= 1501 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2138 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1ve1A/info/1ve1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1ve1A/nostruct-align/1ve1A.t04-thin90.a2m.gz, have 24832 columns in 94 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1twyA/nostruct-align/1twyA.t04-thin90.a2m.gz # 1twyA.t04-thin90.a2m with 1450 sequences, total weight= 1450 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.907233 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1twyA/info/1twyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1twyA/nostruct-align/1twyA.t04-thin90.a2m.gz, have 25081 columns in 95 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d4tA/nostruct-align/1d4tA.t04-thin90.a2m.gz # 1d4tA.t04-thin90.a2m with 432 sequences, total weight= 432 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2832 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d4tA/info/1d4tA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d4tA/nostruct-align/1d4tA.t04-thin90.a2m.gz, have 25185 columns in 96 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2p/2pth/nostruct-align/2pth.t04-thin90.a2m.gz # 2pth.t04-thin90.a2m with 178 sequences, total weight= 28.4314 avg weight= 0.159727 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2p/2pth/info/2pth.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2p/2pth/nostruct-align/2pth.t04-thin90.a2m.gz, have 25378 columns in 97 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sg6A/nostruct-align/1sg6A.t04-thin90.a2m.gz # 1sg6A.t04-thin90.a2m with 685 sequences, total weight= 685 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16425 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sg6A/info/1sg6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sg6A/nostruct-align/1sg6A.t04-thin90.a2m.gz, have 25755 columns in 98 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gxyA/nostruct-align/1gxyA.t04-thin90.a2m.gz # 1gxyA.t04-thin90.a2m with 39 sequences, total weight= 9.57365 avg weight= 0.245478 25 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gxyA/info/1gxyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gxyA/nostruct-align/1gxyA.t04-thin90.a2m.gz, have 25978 columns in 99 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hh8A/nostruct-align/1hh8A.t04-thin90.a2m.gz # 1hh8A.t04-thin90.a2m with 3127 sequences, total weight= 3127 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.808496 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hh8A/info/1hh8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hh8A/nostruct-align/1hh8A.t04-thin90.a2m.gz, have 26170 columns in 100 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1df4A/nostruct-align/1df4A.t04-thin90.a2m.gz # 1df4A.t04-thin90.a2m with 290 sequences, total weight= 4.71245 avg weight= 0.0162498 22 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1df4A/info/1df4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1df4A/nostruct-align/1df4A.t04-thin90.a2m.gz, have 26227 columns in 101 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kyhA/nostruct-align/1kyhA.t04-thin90.a2m.gz # 1kyhA.t04-thin90.a2m with 1268 sequences, total weight= 1268 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.949749 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kyhA/info/1kyhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kyhA/nostruct-align/1kyhA.t04-thin90.a2m.gz, have 26495 columns in 102 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u84A/nostruct-align/1u84A.t04-thin90.a2m.gz # 1u84A.t04-thin90.a2m with 4 sequences, total weight= 3.49219 avg weight= 0.873046 12 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u84A/info/1u84A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1u84A/nostruct-align/1u84A.t04-thin90.a2m.gz, have 26576 columns in 103 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nu0A/nostruct-align/1nu0A.t04-thin90.a2m.gz # 1nu0A.t04-thin90.a2m with 158 sequences, total weight= 41.5328 avg weight= 0.262866 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30038 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nu0A/info/1nu0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nu0A/nostruct-align/1nu0A.t04-thin90.a2m.gz, have 26707 columns in 104 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dciA/nostruct-align/1dciA.t04-thin90.a2m.gz # 1dciA.t04-thin90.a2m with 1292 sequences, total weight= 1292 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16386 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dciA/info/1dciA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dciA/nostruct-align/1dciA.t04-thin90.a2m.gz, have 26982 columns in 105 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xdnA/nostruct-align/1xdnA.t04-thin90.a2m.gz # 1xdnA.t04-thin90.a2m with 10 sequences, total weight= 7.2751 avg weight= 0.72751 16 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xdnA/info/1xdnA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xdnA/nostruct-align/1xdnA.t04-thin90.a2m.gz, have 27247 columns in 106 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tr9A/nostruct-align/1tr9A.t04-thin90.a2m.gz # 1tr9A.t04-thin90.a2m with 476 sequences, total weight= 248.837 avg weight= 0.522766 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30583 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tr9A/info/1tr9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tr9A/nostruct-align/1tr9A.t04-thin90.a2m.gz, have 27577 columns in 107 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k6kA/nostruct-align/1k6kA.t04-thin90.a2m.gz # 1k6kA.t04-thin90.a2m with 171 sequences, total weight= 142.294 avg weight= 0.832127 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30107 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k6kA/info/1k6kA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k6kA/nostruct-align/1k6kA.t04-thin90.a2m.gz, have 27719 columns in 108 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h4rA/nostruct-align/1h4rA.t04-thin90.a2m.gz # 1h4rA.t04-thin90.a2m with 287 sequences, total weight= 287 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03521 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h4rA/info/1h4rA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h4rA/nostruct-align/1h4rA.t04-thin90.a2m.gz, have 28013 columns in 109 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ryiA/nostruct-align/1ryiA.t04-thin90.a2m.gz # 1ryiA.t04-thin90.a2m with 2271 sequences, total weight= 2271 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.845504 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ryiA/info/1ryiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1ryiA/nostruct-align/1ryiA.t04-thin90.a2m.gz, have 28377 columns in 110 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j30A/nostruct-align/1j30A.t04-thin90.a2m.gz # 1j30A.t04-thin90.a2m with 126 sequences, total weight= 126 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2786 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j30A/info/1j30A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j30A/nostruct-align/1j30A.t04-thin90.a2m.gz, have 28518 columns in 111 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ezgA/nostruct-align/1ezgA.t04-thin90.a2m.gz # 1ezgA.t04-thin90.a2m with 15 sequences, total weight= 2.6641 avg weight= 0.177607 13 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ezgA/info/1ezgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1ezgA/nostruct-align/1ezgA.t04-thin90.a2m.gz, have 28600 columns in 112 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nzjA/nostruct-align/1nzjA.t04-thin90.a2m.gz # 1nzjA.t04-thin90.a2m with 1346 sequences, total weight= 1346 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00153 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nzjA/info/1nzjA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nzjA/nostruct-align/1nzjA.t04-thin90.a2m.gz, have 28873 columns in 113 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n62C/nostruct-align/1n62C.t04-thin90.a2m.gz # 1n62C.t04-thin90.a2m with 214 sequences, total weight= 121.313 avg weight= 0.566884 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30222 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n62C/info/1n62C.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n62C/nostruct-align/1n62C.t04-thin90.a2m.gz, have 29159 columns in 114 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t3iA/nostruct-align/1t3iA.t04-thin90.a2m.gz # 1t3iA.t04-thin90.a2m with 2176 sequences, total weight= 2176 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.970128 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t3iA/info/1t3iA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t3iA/nostruct-align/1t3iA.t04-thin90.a2m.gz, have 29565 columns in 115 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tzvA/nostruct-align/1tzvA.t04-thin90.a2m.gz # 1tzvA.t04-thin90.a2m with 272 sequences, total weight= 272 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24018 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tzvA/info/1tzvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tzvA/nostruct-align/1tzvA.t04-thin90.a2m.gz, have 29706 columns in 116 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nuyA/nostruct-align/1nuyA.t04-thin90.a2m.gz # 1nuyA.t04-thin90.a2m with 551 sequences, total weight= 551 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17133 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nuyA/info/1nuyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nuyA/nostruct-align/1nuyA.t04-thin90.a2m.gz, have 30034 columns in 117 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xocA/nostruct-align/1xocA.t04-thin90.a2m.gz # 1xocA.t04-thin90.a2m with 1238 sequences, total weight= 1238 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0669 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xocA/info/1xocA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xocA/nostruct-align/1xocA.t04-thin90.a2m.gz, have 30538 columns in 118 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k0mA/nostruct-align/1k0mA.t04-thin90.a2m.gz # 1k0mA.t04-thin90.a2m with 1682 sequences, total weight= 1682 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.942169 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k0mA/info/1k0mA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k0mA/nostruct-align/1k0mA.t04-thin90.a2m.gz, have 30773 columns in 119 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v5dA/nostruct-align/1v5dA.t04-thin90.a2m.gz # 1v5dA.t04-thin90.a2m with 65 sequences, total weight= 65 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14462 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v5dA/info/1v5dA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v5dA/nostruct-align/1v5dA.t04-thin90.a2m.gz, have 31159 columns in 120 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ekgA/nostruct-align/1ekgA.t04-thin90.a2m.gz # 1ekgA.t04-thin90.a2m with 56 sequences, total weight= 22.8859 avg weight= 0.408677 41 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ekgA/info/1ekgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1ekgA/nostruct-align/1ekgA.t04-thin90.a2m.gz, have 31278 columns in 121 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v33A/nostruct-align/1v33A.t04-thin90.a2m.gz # 1v33A.t04-thin90.a2m with 74 sequences, total weight= 74 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19461 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v33A/info/1v33A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v33A/nostruct-align/1v33A.t04-thin90.a2m.gz, have 31624 columns in 122 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1es5A/nostruct-align/1es5A.t04-thin90.a2m.gz # 1es5A.t04-thin90.a2m with 628 sequences, total weight= 628 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03932 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1es5A/info/1es5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1es5A/nostruct-align/1es5A.t04-thin90.a2m.gz, have 31884 columns in 123 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m7yA/nostruct-align/1m7yA.t04-thin90.a2m.gz # 1m7yA.t04-thin90.a2m with 2114 sequences, total weight= 2114 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.982592 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m7yA/info/1m7yA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m7yA/nostruct-align/1m7yA.t04-thin90.a2m.gz, have 32308 columns in 124 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qauA/nostruct-align/1qauA.t04-thin90.a2m.gz # 1qauA.t04-thin90.a2m with 1072 sequences, total weight= 1072 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06897 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qauA/info/1qauA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qauA/nostruct-align/1qauA.t04-thin90.a2m.gz, have 32420 columns in 125 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vrmA/nostruct-align/1vrmA.t04-thin90.a2m.gz # 1vrmA.t04-thin90.a2m with 161 sequences, total weight= 77.7743 avg weight= 0.48307 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30096 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vrmA/info/1vrmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vrmA/nostruct-align/1vrmA.t04-thin90.a2m.gz, have 32729 columns in 126 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1ne2A/nostruct-align/1ne2A.t04-thin90.a2m.gz # 1ne2A.t04-thin90.a2m with 2357 sequences, total weight= 2357 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.844163 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1ne2A/info/1ne2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1ne2A/nostruct-align/1ne2A.t04-thin90.a2m.gz, have 32905 columns in 127 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e6cA/nostruct-align/1e6cA.t04-thin90.a2m.gz # 1e6cA.t04-thin90.a2m with 2001 sequences, total weight= 2001 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.925812 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e6cA/info/1e6cA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e6cA/nostruct-align/1e6cA.t04-thin90.a2m.gz, have 33075 columns in 128 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ooyA/nostruct-align/1ooyA.t04-thin90.a2m.gz # 1ooyA.t04-thin90.a2m with 401 sequences, total weight= 401 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26245 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ooyA/info/1ooyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ooyA/nostruct-align/1ooyA.t04-thin90.a2m.gz, have 33538 columns in 129 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ojrA/nostruct-align/1ojrA.t04-thin90.a2m.gz # 1ojrA.t04-thin90.a2m with 324 sequences, total weight= 324 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09479 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ojrA/info/1ojrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ojrA/nostruct-align/1ojrA.t04-thin90.a2m.gz, have 33812 columns in 130 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xauA/nostruct-align/1xauA.t04-thin90.a2m.gz # 1xauA.t04-thin90.a2m with 3 sequences, total weight= 2.42248 avg weight= 0.807494 7 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xauA/info/1xauA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xauA/nostruct-align/1xauA.t04-thin90.a2m.gz, have 33916 columns in 131 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sbxA/nostruct-align/1sbxA.t04-thin90.a2m.gz # 1sbxA.t04-thin90.a2m with 33 sequences, total weight= 8.33539 avg weight= 0.252588 23 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sbxA/info/1sbxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sbxA/nostruct-align/1sbxA.t04-thin90.a2m.gz, have 34022 columns in 132 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h4pA/nostruct-align/1h4pA.t04-thin90.a2m.gz # 1h4pA.t04-thin90.a2m with 1347 sequences, total weight= 1347 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.912 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h4pA/info/1h4pA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h4pA/nostruct-align/1h4pA.t04-thin90.a2m.gz, have 34430 columns in 133 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xs0A/nostruct-align/1xs0A.t04-thin90.a2m.gz # 1xs0A.t04-thin90.a2m with 11 sequences, total weight= 7.41236 avg weight= 0.673851 18 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xs0A/info/1xs0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xs0A/nostruct-align/1xs0A.t04-thin90.a2m.gz, have 34558 columns in 134 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sx5A/nostruct-align/1sx5A.t04-thin90.a2m.gz # 1sx5A.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.939234 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sx5A/info/1sx5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sx5A/nostruct-align/1sx5A.t04-thin90.a2m.gz, have 34802 columns in 135 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qy1A/nostruct-align/1qy1A.t04-thin90.a2m.gz # 1qy1A.t04-thin90.a2m with 304 sequences, total weight= 304 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.982737 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qy1A/info/1qy1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qy1A/nostruct-align/1qy1A.t04-thin90.a2m.gz, have 34959 columns in 136 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2i/2igd/nostruct-align/2igd.t04-thin90.a2m.gz # 2igd.t04-thin90.a2m with 14 sequences, total weight= 3.33002 avg weight= 0.237859 13 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2i/2igd/info/2igd.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2i/2igd/nostruct-align/2igd.t04-thin90.a2m.gz, have 35020 columns in 137 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lc0A/nostruct-align/1lc0A.t04-thin90.a2m.gz # 1lc0A.t04-thin90.a2m with 1987 sequences, total weight= 1987 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.811473 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lc0A/info/1lc0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lc0A/nostruct-align/1lc0A.t04-thin90.a2m.gz, have 35310 columns in 138 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v30A/nostruct-align/1v30A.t04-thin90.a2m.gz # 1v30A.t04-thin90.a2m with 114 sequences, total weight= 114 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21601 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v30A/info/1v30A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v30A/nostruct-align/1v30A.t04-thin90.a2m.gz, have 35428 columns in 139 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dfuP/nostruct-align/1dfuP.t04-thin90.a2m.gz # 1dfuP.t04-thin90.a2m with 114 sequences, total weight= 31.0506 avg weight= 0.272373 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dfuP/info/1dfuP.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dfuP/nostruct-align/1dfuP.t04-thin90.a2m.gz, have 35522 columns in 140 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1po5A/nostruct-align/1po5A.t04-thin90.a2m.gz # 1po5A.t04-thin90.a2m with 1949 sequences, total weight= 1949 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13913 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1po5A/info/1po5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1po5A/nostruct-align/1po5A.t04-thin90.a2m.gz, have 35987 columns in 141 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1md6A/nostruct-align/1md6A.t04-thin90.a2m.gz # 1md6A.t04-thin90.a2m with 89 sequences, total weight= 31.0751 avg weight= 0.349159 43 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1md6A/info/1md6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1md6A/nostruct-align/1md6A.t04-thin90.a2m.gz, have 36141 columns in 142 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qwrA/nostruct-align/1qwrA.t04-thin90.a2m.gz # 1qwrA.t04-thin90.a2m with 126 sequences, total weight= 126 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29805 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qwrA/info/1qwrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qwrA/nostruct-align/1qwrA.t04-thin90.a2m.gz, have 36456 columns in 143 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uwkA/nostruct-align/1uwkA.t04-thin90.a2m.gz # 1uwkA.t04-thin90.a2m with 61 sequences, total weight= 6.32777 avg weight= 0.103734 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uwkA/info/1uwkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uwkA/nostruct-align/1uwkA.t04-thin90.a2m.gz, have 37010 columns in 144 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1upqA/nostruct-align/1upqA.t04-thin90.a2m.gz # 1upqA.t04-thin90.a2m with 1290 sequences, total weight= 1290 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.931933 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1upqA/info/1upqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1upqA/nostruct-align/1upqA.t04-thin90.a2m.gz, have 37117 columns in 145 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pwgA/nostruct-align/1pwgA.t04-thin90.a2m.gz # 1pwgA.t04-thin90.a2m with 579 sequences, total weight= 579 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00505 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pwgA/info/1pwgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pwgA/nostruct-align/1pwgA.t04-thin90.a2m.gz, have 37462 columns in 146 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jx6A/nostruct-align/1jx6A.t04-thin90.a2m.gz # 1jx6A.t04-thin90.a2m with 1468 sequences, total weight= 1468 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.934989 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jx6A/info/1jx6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jx6A/nostruct-align/1jx6A.t04-thin90.a2m.gz, have 37800 columns in 147 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tqgA/nostruct-align/1tqgA.t04-thin90.a2m.gz # 1tqgA.t04-thin90.a2m with 236 sequences, total weight= 161.355 avg weight= 0.683709 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30295 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tqgA/info/1tqgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tqgA/nostruct-align/1tqgA.t04-thin90.a2m.gz, have 37905 columns in 148 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f5vA/nostruct-align/1f5vA.t04-thin90.a2m.gz # 1f5vA.t04-thin90.a2m with 562 sequences, total weight= 562 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12578 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f5vA/info/1f5vA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f5vA/nostruct-align/1f5vA.t04-thin90.a2m.gz, have 38145 columns in 149 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fcqA/nostruct-align/1fcqA.t04-thin90.a2m.gz # 1fcqA.t04-thin90.a2m with 37 sequences, total weight= 10.8977 avg weight= 0.294533 30 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fcqA/info/1fcqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fcqA/nostruct-align/1fcqA.t04-thin90.a2m.gz, have 38459 columns in 150 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pbyB/nostruct-align/1pbyB.t04-thin90.a2m.gz # 1pbyB.t04-thin90.a2m with 2219 sequences, total weight= 2219 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.864772 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pbyB/info/1pbyB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pbyB/nostruct-align/1pbyB.t04-thin90.a2m.gz, have 38796 columns in 151 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b3aA/nostruct-align/1b3aA.t04-thin90.a2m.gz # 1b3aA.t04-thin90.a2m with 218 sequences, total weight= 55.1249 avg weight= 0.252867 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30117 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b3aA/info/1b3aA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1b3aA/nostruct-align/1b3aA.t04-thin90.a2m.gz, have 38863 columns in 152 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dqzA/nostruct-align/1dqzA.t04-thin90.a2m.gz # 1dqzA.t04-thin90.a2m with 2212 sequences, total weight= 2212 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.797172 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dqzA/info/1dqzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dqzA/nostruct-align/1dqzA.t04-thin90.a2m.gz, have 39143 columns in 153 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rkuA/nostruct-align/1rkuA.t04-thin90.a2m.gz # 1rkuA.t04-thin90.a2m with 2077 sequences, total weight= 2077 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00965 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rkuA/info/1rkuA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rkuA/nostruct-align/1rkuA.t04-thin90.a2m.gz, have 39349 columns in 154 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hfeS/nostruct-align/1hfeS.t04-thin90.a2m.gz # 1hfeS.t04-thin90.a2m with 13 sequences, total weight= 7.44781 avg weight= 0.572909 20 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hfeS/info/1hfeS.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hfeS/nostruct-align/1hfeS.t04-thin90.a2m.gz, have 39437 columns in 155 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nnhA/nostruct-align/1nnhA.t04-thin90.a2m.gz # 1nnhA.t04-thin90.a2m with 950 sequences, total weight= 950 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14285 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nnhA/info/1nnhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nnhA/nostruct-align/1nnhA.t04-thin90.a2m.gz, have 39730 columns in 156 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vkiA/nostruct-align/1vkiA.t04-thin90.a2m.gz # 1vkiA.t04-thin90.a2m with 244 sequences, total weight= 244 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22947 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vkiA/info/1vkiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vkiA/nostruct-align/1vkiA.t04-thin90.a2m.gz, have 39895 columns in 157 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o66A/nostruct-align/1o66A.t04-thin90.a2m.gz # 1o66A.t04-thin90.a2m with 139 sequences, total weight= 11.9227 avg weight= 0.0857751 35 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o66A/info/1o66A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o66A/nostruct-align/1o66A.t04-thin90.a2m.gz, have 40144 columns in 158 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xfkA/nostruct-align/1xfkA.t04-thin90.a2m.gz # 1xfkA.t04-thin90.a2m with 306 sequences, total weight= 306 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23504 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xfkA/info/1xfkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xfkA/nostruct-align/1xfkA.t04-thin90.a2m.gz, have 40468 columns in 159 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1ybiA/nostruct-align/1ybiA.t04-thin90.a2m.gz # 1ybiA.t04-thin90.a2m with 200 sequences, total weight= 200 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.994434 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1ybiA/info/1ybiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1ybiA/nostruct-align/1ybiA.t04-thin90.a2m.gz, have 40752 columns in 160 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vicA/nostruct-align/1vicA.t04-thin90.a2m.gz # 1vicA.t04-thin90.a2m with 1752 sequences, total weight= 1752 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.968533 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vicA/info/1vicA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vicA/nostruct-align/1vicA.t04-thin90.a2m.gz, have 41007 columns in 161 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j6oA/nostruct-align/1j6oA.t04-thin90.a2m.gz # 1j6oA.t04-thin90.a2m with 560 sequences, total weight= 560 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.970925 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j6oA/info/1j6oA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j6oA/nostruct-align/1j6oA.t04-thin90.a2m.gz, have 41267 columns in 162 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tukA/nostruct-align/1tukA.t04-thin90.a2m.gz # 1tukA.t04-thin90.a2m with 58 sequences, total weight= 11.8732 avg weight= 0.204711 42 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tukA/info/1tukA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tukA/nostruct-align/1tukA.t04-thin90.a2m.gz, have 41334 columns in 163 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h4aX/nostruct-align/1h4aX.t04-thin90.a2m.gz # 1h4aX.t04-thin90.a2m with 108 sequences, total weight= 33.9386 avg weight= 0.314246 44 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h4aX/info/1h4aX.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h4aX/nostruct-align/1h4aX.t04-thin90.a2m.gz, have 41507 columns in 164 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xteA/nostruct-align/1xteA.t04-thin90.a2m.gz # 1xteA.t04-thin90.a2m with 428 sequences, total weight= 428 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0813 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xteA/info/1xteA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xteA/nostruct-align/1xteA.t04-thin90.a2m.gz, have 41623 columns in 165 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i1wA/nostruct-align/1i1wA.t04-thin90.a2m.gz # 1i1wA.t04-thin90.a2m with 291 sequences, total weight= 291 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0439 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i1wA/info/1i1wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i1wA/nostruct-align/1i1wA.t04-thin90.a2m.gz, have 41926 columns in 166 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1ten/nostruct-align/1ten.t04-thin90.a2m.gz # 1ten.t04-thin90.a2m with 2178 sequences, total weight= 2178 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06907 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1ten/info/1ten.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1ten/nostruct-align/1ten.t04-thin90.a2m.gz, have 42015 columns in 167 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cb0A/nostruct-align/1cb0A.t04-thin90.a2m.gz # 1cb0A.t04-thin90.a2m with 501 sequences, total weight= 501 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02241 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cb0A/info/1cb0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1cb0A/nostruct-align/1cb0A.t04-thin90.a2m.gz, have 42283 columns in 168 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oalA/nostruct-align/1oalA.t04-thin90.a2m.gz # 1oalA.t04-thin90.a2m with 301 sequences, total weight= 39.0519 avg weight= 0.129741 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oalA/info/1oalA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oalA/nostruct-align/1oalA.t04-thin90.a2m.gz, have 42434 columns in 169 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1deuA/nostruct-align/1deuA.t04-thin90.a2m.gz # 1deuA.t04-thin90.a2m with 857 sequences, total weight= 857 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22063 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1deuA/info/1deuA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1deuA/nostruct-align/1deuA.t04-thin90.a2m.gz, have 42709 columns in 170 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1ygtA/nostruct-align/1ygtA.t04-thin90.a2m.gz # 1ygtA.t04-thin90.a2m with 92 sequences, total weight= 72.5161 avg weight= 0.788219 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1ygtA/info/1ygtA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1ygtA/nostruct-align/1ygtA.t04-thin90.a2m.gz, have 42813 columns in 171 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oh0A/nostruct-align/1oh0A.t04-thin90.a2m.gz # 1oh0A.t04-thin90.a2m with 410 sequences, total weight= 410 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.84971 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oh0A/info/1oh0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oh0A/nostruct-align/1oh0A.t04-thin90.a2m.gz, have 42938 columns in 172 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1byi/nostruct-align/1byi.t04-thin90.a2m.gz # 1byi.t04-thin90.a2m with 2049 sequences, total weight= 2049 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.926397 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1byi/info/1byi.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1byi/nostruct-align/1byi.t04-thin90.a2m.gz, have 43162 columns in 173 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wkqA/nostruct-align/1wkqA.t04-thin90.a2m.gz # 1wkqA.t04-thin90.a2m with 688 sequences, total weight= 688 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13312 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wkqA/info/1wkqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wkqA/nostruct-align/1wkqA.t04-thin90.a2m.gz, have 43320 columns in 174 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eexG/nostruct-align/1eexG.t04-thin90.a2m.gz # 1eexG.t04-thin90.a2m with 11 sequences, total weight= 3.75644 avg weight= 0.341494 16 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eexG/info/1eexG.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1eexG/nostruct-align/1eexG.t04-thin90.a2m.gz, have 43457 columns in 175 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m0kA/nostruct-align/1m0kA.t04-thin90.a2m.gz # 1m0kA.t04-thin90.a2m with 54 sequences, total weight= 37.8745 avg weight= 0.701379 40 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m0kA/info/1m0kA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m0kA/nostruct-align/1m0kA.t04-thin90.a2m.gz, have 43679 columns in 176 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t0tV/nostruct-align/1t0tV.t04-thin90.a2m.gz # 1t0tV.t04-thin90.a2m with 37 sequences, total weight= 28.5194 avg weight= 0.770794 34 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t0tV/info/1t0tV.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t0tV/nostruct-align/1t0tV.t04-thin90.a2m.gz, have 43922 columns in 177 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m6pA/nostruct-align/1m6pA.t04-thin90.a2m.gz # 1m6pA.t04-thin90.a2m with 212 sequences, total weight= 105.652 avg weight= 0.498357 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30125 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m6pA/info/1m6pA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m6pA/nostruct-align/1m6pA.t04-thin90.a2m.gz, have 44068 columns in 178 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e6uA/nostruct-align/1e6uA.t04-thin90.a2m.gz # 1e6uA.t04-thin90.a2m with 2126 sequences, total weight= 2126 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09643 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e6uA/info/1e6uA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e6uA/nostruct-align/1e6uA.t04-thin90.a2m.gz, have 44383 columns in 179 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q5yA/nostruct-align/1q5yA.t04-thin90.a2m.gz # 1q5yA.t04-thin90.a2m with 38 sequences, total weight= 11.5421 avg weight= 0.303739 30 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q5yA/info/1q5yA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q5yA/nostruct-align/1q5yA.t04-thin90.a2m.gz, have 44467 columns in 180 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r0rI/nostruct-align/1r0rI.t04-thin90.a2m.gz # 1r0rI.t04-thin90.a2m with 144 sequences, total weight= 22.8897 avg weight= 0.158956 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r0rI/info/1r0rI.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r0rI/nostruct-align/1r0rI.t04-thin90.a2m.gz, have 44518 columns in 181 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w2yA/nostruct-align/1w2yA.t04-thin90.a2m.gz # 1w2yA.t04-thin90.a2m with 30 sequences, total weight= 28.6809 avg weight= 0.95603 21 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w2yA/info/1w2yA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w2yA/nostruct-align/1w2yA.t04-thin90.a2m.gz, have 44744 columns in 182 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e7wA/nostruct-align/1e7wA.t04-thin90.a2m.gz # 1e7wA.t04-thin90.a2m with 2346 sequences, total weight= 122.255 avg weight= 0.0521123 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30791 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e7wA/info/1e7wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e7wA/nostruct-align/1e7wA.t04-thin90.a2m.gz, have 45011 columns in 183 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lopA/nostruct-align/1lopA.t04-thin90.a2m.gz # 1lopA.t04-thin90.a2m with 688 sequences, total weight= 74.9318 avg weight= 0.108912 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30136 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lopA/info/1lopA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lopA/nostruct-align/1lopA.t04-thin90.a2m.gz, have 45175 columns in 184 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1ty9A/nostruct-align/1ty9A.t04-thin90.a2m.gz # 1ty9A.t04-thin90.a2m with 247 sequences, total weight= 247 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2411 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1ty9A/info/1ty9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1ty9A/nostruct-align/1ty9A.t04-thin90.a2m.gz, have 45377 columns in 185 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t61A/nostruct-align/1t61A.t04-thin90.a2m.gz # 1t61A.t04-thin90.a2m with 48 sequences, total weight= 4.5849 avg weight= 0.0955188 21 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t61A/info/1t61A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t61A/nostruct-align/1t61A.t04-thin90.a2m.gz, have 45600 columns in 186 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fj2A/nostruct-align/1fj2A.t04-thin90.a2m.gz # 1fj2A.t04-thin90.a2m with 2297 sequences, total weight= 2297 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.835768 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fj2A/info/1fj2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fj2A/nostruct-align/1fj2A.t04-thin90.a2m.gz, have 45829 columns in 187 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a8d/nostruct-align/1a8d.t04-thin90.a2m.gz # 1a8d.t04-thin90.a2m with 48 sequences, total weight= 41.0792 avg weight= 0.855817 29 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a8d/info/1a8d.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1a8d/nostruct-align/1a8d.t04-thin90.a2m.gz, have 46281 columns in 188 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sxrA/nostruct-align/1sxrA.t04-thin90.a2m.gz # 1sxrA.t04-thin90.a2m with 233 sequences, total weight= 233 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26349 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sxrA/info/1sxrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sxrA/nostruct-align/1sxrA.t04-thin90.a2m.gz, have 46454 columns in 189 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kgdA/nostruct-align/1kgdA.t04-thin90.a2m.gz # 1kgdA.t04-thin90.a2m with 724 sequences, total weight= 724 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13765 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kgdA/info/1kgdA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kgdA/nostruct-align/1kgdA.t04-thin90.a2m.gz, have 46629 columns in 190 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1px5A/nostruct-align/1px5A.t04-thin90.a2m.gz # 1px5A.t04-thin90.a2m with 53 sequences, total weight= 16.2333 avg weight= 0.306289 31 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1px5A/info/1px5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1px5A/nostruct-align/1px5A.t04-thin90.a2m.gz, have 46958 columns in 191 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1npk/nostruct-align/1npk.t04-thin90.a2m.gz # 1npk.t04-thin90.a2m with 271 sequences, total weight= 39.091 avg weight= 0.144247 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1npk/info/1npk.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1npk/nostruct-align/1npk.t04-thin90.a2m.gz, have 47108 columns in 192 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sbyA/nostruct-align/1sbyA.t04-thin90.a2m.gz # 1sbyA.t04-thin90.a2m with 2326 sequences, total weight= 230.687 avg weight= 0.0991774 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.33269 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sbyA/info/1sbyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sbyA/nostruct-align/1sbyA.t04-thin90.a2m.gz, have 47362 columns in 193 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i1jA/nostruct-align/1i1jA.t04-thin90.a2m.gz # 1i1jA.t04-thin90.a2m with 12 sequences, total weight= 4.95312 avg weight= 0.41276 20 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i1jA/info/1i1jA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i1jA/nostruct-align/1i1jA.t04-thin90.a2m.gz, have 47468 columns in 194 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t1vA/nostruct-align/1t1vA.t04-thin90.a2m.gz # 1t1vA.t04-thin90.a2m with 337 sequences, total weight= 131.334 avg weight= 0.389716 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30385 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t1vA/info/1t1vA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t1vA/nostruct-align/1t1vA.t04-thin90.a2m.gz, have 47561 columns in 195 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j0pA/nostruct-align/1j0pA.t04-thin90.a2m.gz # 1j0pA.t04-thin90.a2m with 52 sequences, total weight= 52 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25424 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j0pA/info/1j0pA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j0pA/nostruct-align/1j0pA.t04-thin90.a2m.gz, have 47669 columns in 196 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1llfA/nostruct-align/1llfA.t04-thin90.a2m.gz # 1llfA.t04-thin90.a2m with 1718 sequences, total weight= 1718 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.96408 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1llfA/info/1llfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1llfA/nostruct-align/1llfA.t04-thin90.a2m.gz, have 48203 columns in 197 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t2wA/nostruct-align/1t2wA.t04-thin90.a2m.gz # 1t2wA.t04-thin90.a2m with 145 sequences, total weight= 126.415 avg weight= 0.871825 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30045 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t2wA/info/1t2wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t2wA/nostruct-align/1t2wA.t04-thin90.a2m.gz, have 48348 columns in 198 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yrcA/nostruct-align/1yrcA.t04-thin90.a2m.gz # 1yrcA.t04-thin90.a2m with 1976 sequences, total weight= 1976 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19558 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yrcA/info/1yrcA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1yrcA/nostruct-align/1yrcA.t04-thin90.a2m.gz, have 48753 columns in 199 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lniA/nostruct-align/1lniA.t04-thin90.a2m.gz # 1lniA.t04-thin90.a2m with 29 sequences, total weight= 9.21263 avg weight= 0.317677 26 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lniA/info/1lniA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lniA/nostruct-align/1lniA.t04-thin90.a2m.gz, have 48849 columns in 200 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p5dX/nostruct-align/1p5dX.t04-thin90.a2m.gz # 1p5dX.t04-thin90.a2m with 615 sequences, total weight= 615 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26117 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p5dX/info/1p5dX.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p5dX/nostruct-align/1p5dX.t04-thin90.a2m.gz, have 49304 columns in 201 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eu3A/nostruct-align/1eu3A.t04-thin90.a2m.gz # 1eu3A.t04-thin90.a2m with 66 sequences, total weight= 46.0359 avg weight= 0.697513 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eu3A/info/1eu3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1eu3A/nostruct-align/1eu3A.t04-thin90.a2m.gz, have 49514 columns in 202 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kpf/nostruct-align/1kpf.t04-thin90.a2m.gz # 1kpf.t04-thin90.a2m with 408 sequences, total weight= 408 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21343 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kpf/info/1kpf.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kpf/nostruct-align/1kpf.t04-thin90.a2m.gz, have 49625 columns in 203 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m1fA/nostruct-align/1m1fA.t04-thin90.a2m.gz # 1m1fA.t04-thin90.a2m with 118 sequences, total weight= 90.1937 avg weight= 0.764353 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30053 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m1fA/info/1m1fA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m1fA/nostruct-align/1m1fA.t04-thin90.a2m.gz, have 49732 columns in 204 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qhoA/nostruct-align/1qhoA.t04-thin90.a2m.gz # 1qhoA.t04-thin90.a2m with 1307 sequences, total weight= 1307 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13897 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qhoA/info/1qhoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qhoA/nostruct-align/1qhoA.t04-thin90.a2m.gz, have 50418 columns in 205 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yacA/nostruct-align/1yacA.t04-thin90.a2m.gz # 1yacA.t04-thin90.a2m with 467 sequences, total weight= 467 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11919 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yacA/info/1yacA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1yacA/nostruct-align/1yacA.t04-thin90.a2m.gz, have 50622 columns in 206 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p3cA/nostruct-align/1p3cA.t04-thin90.a2m.gz # 1p3cA.t04-thin90.a2m with 1917 sequences, total weight= 1917 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29358 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p3cA/info/1p3cA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p3cA/nostruct-align/1p3cA.t04-thin90.a2m.gz, have 50837 columns in 207 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o7qA/nostruct-align/1o7qA.t04-thin90.a2m.gz # 1o7qA.t04-thin90.a2m with 41 sequences, total weight= 8.51309 avg weight= 0.207636 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o7qA/info/1o7qA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o7qA/nostruct-align/1o7qA.t04-thin90.a2m.gz, have 51124 columns in 208 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mgqA/nostruct-align/1mgqA.t04-thin90.a2m.gz # 1mgqA.t04-thin90.a2m with 249 sequences, total weight= 115.072 avg weight= 0.462137 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30289 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mgqA/info/1mgqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mgqA/nostruct-align/1mgqA.t04-thin90.a2m.gz, have 51198 columns in 209 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w3iA/nostruct-align/1w3iA.t04-thin90.a2m.gz # 1w3iA.t04-thin90.a2m with 487 sequences, total weight= 487 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25723 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w3iA/info/1w3iA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w3iA/nostruct-align/1w3iA.t04-thin90.a2m.gz, have 51491 columns in 210 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uxzA/nostruct-align/1uxzA.t04-thin90.a2m.gz # 1uxzA.t04-thin90.a2m with 134 sequences, total weight= 94.5219 avg weight= 0.705388 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30051 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uxzA/info/1uxzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uxzA/nostruct-align/1uxzA.t04-thin90.a2m.gz, have 51622 columns in 211 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ra0A/nostruct-align/1ra0A.t04-thin90.a2m.gz # 1ra0A.t04-thin90.a2m with 1640 sequences, total weight= 1640 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.887809 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ra0A/info/1ra0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1ra0A/nostruct-align/1ra0A.t04-thin90.a2m.gz, have 52045 columns in 212 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wm3A/nostruct-align/1wm3A.t04-thin90.a2m.gz # 1wm3A.t04-thin90.a2m with 54 sequences, total weight= 20.4634 avg weight= 0.378952 36 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wm3A/info/1wm3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wm3A/nostruct-align/1wm3A.t04-thin90.a2m.gz, have 52117 columns in 213 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r12A/nostruct-align/1r12A.t04-thin90.a2m.gz # 1r12A.t04-thin90.a2m with 12 sequences, total weight= 6.32465 avg weight= 0.527054 18 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r12A/info/1r12A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r12A/nostruct-align/1r12A.t04-thin90.a2m.gz, have 52368 columns in 214 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1egwA/nostruct-align/1egwA.t04-thin90.a2m.gz # 1egwA.t04-thin90.a2m with 414 sequences, total weight= 17.6372 avg weight= 0.0426018 41 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1egwA/info/1egwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1egwA/nostruct-align/1egwA.t04-thin90.a2m.gz, have 52439 columns in 215 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jmkC/nostruct-align/1jmkC.t04-thin90.a2m.gz # 1jmkC.t04-thin90.a2m with 2358 sequences, total weight= 2358 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.871629 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jmkC/info/1jmkC.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jmkC/nostruct-align/1jmkC.t04-thin90.a2m.gz, have 52661 columns in 216 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1duvG/nostruct-align/1duvG.t04-thin90.a2m.gz # 1duvG.t04-thin90.a2m with 416 sequences, total weight= 45.1396 avg weight= 0.108509 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1duvG/info/1duvG.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1duvG/nostruct-align/1duvG.t04-thin90.a2m.gz, have 52994 columns in 217 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rocA/nostruct-align/1rocA.t04-thin90.a2m.gz # 1rocA.t04-thin90.a2m with 31 sequences, total weight= 8.349 avg weight= 0.269323 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rocA/info/1rocA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rocA/nostruct-align/1rocA.t04-thin90.a2m.gz, have 53149 columns in 218 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v70A/nostruct-align/1v70A.t04-thin90.a2m.gz # 1v70A.t04-thin90.a2m with 1320 sequences, total weight= 1320 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.882362 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v70A/info/1v70A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v70A/nostruct-align/1v70A.t04-thin90.a2m.gz, have 53254 columns in 219 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i71A/nostruct-align/1i71A.t04-thin90.a2m.gz # 1i71A.t04-thin90.a2m with 215 sequences, total weight= 23.945 avg weight= 0.111372 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i71A/info/1i71A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i71A/nostruct-align/1i71A.t04-thin90.a2m.gz, have 53337 columns in 220 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dqgA/nostruct-align/1dqgA.t04-thin90.a2m.gz # 1dqgA.t04-thin90.a2m with 16 sequences, total weight= 8.86823 avg weight= 0.554264 23 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dqgA/info/1dqgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dqgA/nostruct-align/1dqgA.t04-thin90.a2m.gz, have 53471 columns in 221 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pq7A/nostruct-align/1pq7A.t04-thin90.a2m.gz # 1pq7A.t04-thin90.a2m with 1915 sequences, total weight= 494.387 avg weight= 0.258165 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.33113 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pq7A/info/1pq7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pq7A/nostruct-align/1pq7A.t04-thin90.a2m.gz, have 53695 columns in 222 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l1lA/nostruct-align/1l1lA.t04-thin90.a2m.gz # 1l1lA.t04-thin90.a2m with 304 sequences, total weight= 304 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21258 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l1lA/info/1l1lA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1l1lA/nostruct-align/1l1lA.t04-thin90.a2m.gz, have 54412 columns in 223 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e2wA/nostruct-align/1e2wA.t04-thin90.a2m.gz # 1e2wA.t04-thin90.a2m with 40 sequences, total weight= 4.30209 avg weight= 0.107552 21 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e2wA/info/1e2wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e2wA/nostruct-align/1e2wA.t04-thin90.a2m.gz, have 54663 columns in 224 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lam/nostruct-align/1lam.t04-thin90.a2m.gz # 1lam.t04-thin90.a2m with 227 sequences, total weight= 47.4053 avg weight= 0.208834 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30055 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lam/info/1lam.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lam/nostruct-align/1lam.t04-thin90.a2m.gz, have 55147 columns in 225 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xx1A/nostruct-align/1xx1A.t04-thin90.a2m.gz # 1xx1A.t04-thin90.a2m with 24 sequences, total weight= 17.6331 avg weight= 0.734712 22 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xx1A/info/1xx1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xx1A/nostruct-align/1xx1A.t04-thin90.a2m.gz, have 55432 columns in 226 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1ltzA/nostruct-align/1ltzA.t04-thin90.a2m.gz # 1ltzA.t04-thin90.a2m with 61 sequences, total weight= 16.9704 avg weight= 0.278203 35 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1ltzA/info/1ltzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1ltzA/nostruct-align/1ltzA.t04-thin90.a2m.gz, have 55706 columns in 227 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nar/nostruct-align/1nar.t04-thin90.a2m.gz # 1nar.t04-thin90.a2m with 651 sequences, total weight= 651 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07809 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nar/info/1nar.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nar/nostruct-align/1nar.t04-thin90.a2m.gz, have 55995 columns in 228 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xppA/nostruct-align/1xppA.t04-thin90.a2m.gz # 1xppA.t04-thin90.a2m with 5 sequences, total weight= 3.96946 avg weight= 0.793891 12 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xppA/info/1xppA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xppA/nostruct-align/1xppA.t04-thin90.a2m.gz, have 56094 columns in 229 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kyfA/nostruct-align/1kyfA.t04-thin90.a2m.gz # 1kyfA.t04-thin90.a2m with 26 sequences, total weight= 22.9897 avg weight= 0.88422 29 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kyfA/info/1kyfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kyfA/nostruct-align/1kyfA.t04-thin90.a2m.gz, have 56341 columns in 230 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i40A/nostruct-align/1i40A.t04-thin90.a2m.gz # 1i40A.t04-thin90.a2m with 185 sequences, total weight= 27.5971 avg weight= 0.149174 45 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i40A/info/1i40A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i40A/nostruct-align/1i40A.t04-thin90.a2m.gz, have 56516 columns in 231 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1io0A/nostruct-align/1io0A.t04-thin90.a2m.gz # 1io0A.t04-thin90.a2m with 36 sequences, total weight= 16.4896 avg weight= 0.458045 29 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1io0A/info/1io0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1io0A/nostruct-align/1io0A.t04-thin90.a2m.gz, have 56682 columns in 232 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/8a/8abp/nostruct-align/8abp.t04-thin90.a2m.gz # 8abp.t04-thin90.a2m with 1316 sequences, total weight= 1316 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.974163 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/8a/8abp/info/8abp.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/8a/8abp/nostruct-align/8abp.t04-thin90.a2m.gz, have 56987 columns in 233 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cjwA/nostruct-align/1cjwA.t04-thin90.a2m.gz # 1cjwA.t04-thin90.a2m with 2442 sequences, total weight= 2442 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.812045 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cjwA/info/1cjwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1cjwA/nostruct-align/1cjwA.t04-thin90.a2m.gz, have 57153 columns in 234 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bopA/nostruct-align/2bopA.t04-thin90.a2m.gz # 2bopA.t04-thin90.a2m with 108 sequences, total weight= 14.5827 avg weight= 0.135025 38 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bopA/info/2bopA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2b/2bopA/nostruct-align/2bopA.t04-thin90.a2m.gz, have 57238 columns in 235 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xzzA/nostruct-align/1xzzA.t04-thin90.a2m.gz # 1xzzA.t04-thin90.a2m with 29 sequences, total weight= 9.60271 avg weight= 0.331128 20 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xzzA/info/1xzzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xzzA/nostruct-align/1xzzA.t04-thin90.a2m.gz, have 57454 columns in 236 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qmgA/nostruct-align/1qmgA.t04-thin90.a2m.gz # 1qmgA.t04-thin90.a2m with 1454 sequences, total weight= 1454 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0794 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qmgA/info/1qmgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qmgA/nostruct-align/1qmgA.t04-thin90.a2m.gz, have 57968 columns in 237 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jovA/nostruct-align/1jovA.t04-thin90.a2m.gz # 1jovA.t04-thin90.a2m with 285 sequences, total weight= 285 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11737 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jovA/info/1jovA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jovA/nostruct-align/1jovA.t04-thin90.a2m.gz, have 58237 columns in 238 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1ws8A/nostruct-align/1ws8A.t04-thin90.a2m.gz # 1ws8A.t04-thin90.a2m with 134 sequences, total weight= 24.3231 avg weight= 0.181515 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1ws8A/info/1ws8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1ws8A/nostruct-align/1ws8A.t04-thin90.a2m.gz, have 58341 columns in 239 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vmgA/nostruct-align/1vmgA.t04-thin90.a2m.gz # 1vmgA.t04-thin90.a2m with 94 sequences, total weight= 45.4682 avg weight= 0.483704 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vmgA/info/1vmgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vmgA/nostruct-align/1vmgA.t04-thin90.a2m.gz, have 58424 columns in 240 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hqkA/nostruct-align/1hqkA.t04-thin90.a2m.gz # 1hqkA.t04-thin90.a2m with 173 sequences, total weight= 24.363 avg weight= 0.140827 45 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hqkA/info/1hqkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hqkA/nostruct-align/1hqkA.t04-thin90.a2m.gz, have 58578 columns in 241 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e85A/nostruct-align/1e85A.t04-thin90.a2m.gz # 1e85A.t04-thin90.a2m with 43 sequences, total weight= 43 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27597 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e85A/info/1e85A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e85A/nostruct-align/1e85A.t04-thin90.a2m.gz, have 58703 columns in 242 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e6bA/nostruct-align/1e6bA.t04-thin90.a2m.gz # 1e6bA.t04-thin90.a2m with 1644 sequences, total weight= 1644 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02422 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e6bA/info/1e6bA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e6bA/nostruct-align/1e6bA.t04-thin90.a2m.gz, have 58897 columns in 243 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nzyA/nostruct-align/1nzyA.t04-thin90.a2m.gz # 1nzyA.t04-thin90.a2m with 1301 sequences, total weight= 1301 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17953 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nzyA/info/1nzyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nzyA/nostruct-align/1nzyA.t04-thin90.a2m.gz, have 59166 columns in 244 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n93X/nostruct-align/1n93X.t04-thin90.a2m.gz # 1n93X.t04-thin90.a2m with 11 sequences, total weight= 5.24515 avg weight= 0.476832 12 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n93X/info/1n93X.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n93X/nostruct-align/1n93X.t04-thin90.a2m.gz, have 59501 columns in 245 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qq5A/nostruct-align/1qq5A.t04-thin90.a2m.gz # 1qq5A.t04-thin90.a2m with 1896 sequences, total weight= 1896 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.793937 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qq5A/info/1qq5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qq5A/nostruct-align/1qq5A.t04-thin90.a2m.gz, have 59746 columns in 246 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1si6X/nostruct-align/1si6X.t04-thin90.a2m.gz # 1si6X.t04-thin90.a2m with 795 sequences, total weight= 795 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.986478 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1si6X/info/1si6X.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1si6X/nostruct-align/1si6X.t04-thin90.a2m.gz, have 60026 columns in 247 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r5rA/nostruct-align/1r5rA.t04-thin90.a2m.gz # 1r5rA.t04-thin90.a2m with 208 sequences, total weight= 208 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.966659 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r5rA/info/1r5rA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r5rA/nostruct-align/1r5rA.t04-thin90.a2m.gz, have 60143 columns in 248 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ow1A/nostruct-align/1ow1A.t04-thin90.a2m.gz # 1ow1A.t04-thin90.a2m with 10 sequences, total weight= 6.79296 avg weight= 0.679296 19 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ow1A/info/1ow1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ow1A/nostruct-align/1ow1A.t04-thin90.a2m.gz, have 60310 columns in 249 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iirA/nostruct-align/1iirA.t04-thin90.a2m.gz # 1iirA.t04-thin90.a2m with 2262 sequences, total weight= 2262 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.808245 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iirA/info/1iirA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iirA/nostruct-align/1iirA.t04-thin90.a2m.gz, have 60692 columns in 250 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vggA/nostruct-align/1vggA.t04-thin90.a2m.gz # 1vggA.t04-thin90.a2m with 24 sequences, total weight= 3.82664 avg weight= 0.159443 19 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vggA/info/1vggA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vggA/nostruct-align/1vggA.t04-thin90.a2m.gz, have 60853 columns in 251 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oc7A/nostruct-align/1oc7A.t04-thin90.a2m.gz # 1oc7A.t04-thin90.a2m with 71 sequences, total weight= 19.5403 avg weight= 0.275216 35 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oc7A/info/1oc7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oc7A/nostruct-align/1oc7A.t04-thin90.a2m.gz, have 61217 columns in 252 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wkrA/nostruct-align/1wkrA.t04-thin90.a2m.gz # 1wkrA.t04-thin90.a2m with 794 sequences, total weight= 794 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19643 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wkrA/info/1wkrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wkrA/nostruct-align/1wkrA.t04-thin90.a2m.gz, have 61557 columns in 253 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v4vA/nostruct-align/1v4vA.t04-thin90.a2m.gz # 1v4vA.t04-thin90.a2m with 2438 sequences, total weight= 2438 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.811693 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v4vA/info/1v4vA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v4vA/nostruct-align/1v4vA.t04-thin90.a2m.gz, have 61930 columns in 254 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wy2A/nostruct-align/1wy2A.t04-thin90.a2m.gz # 1wy2A.t04-thin90.a2m with 1133 sequences, total weight= 1133 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11044 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wy2A/info/1wy2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wy2A/nostruct-align/1wy2A.t04-thin90.a2m.gz, have 62281 columns in 255 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tt8A/nostruct-align/1tt8A.t04-thin90.a2m.gz # 1tt8A.t04-thin90.a2m with 76 sequences, total weight= 76 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18152 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tt8A/info/1tt8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tt8A/nostruct-align/1tt8A.t04-thin90.a2m.gz, have 62445 columns in 256 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qsgA/nostruct-align/1qsgA.t04-thin90.a2m.gz # 1qsgA.t04-thin90.a2m with 2356 sequences, total weight= 109.347 avg weight= 0.0464123 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32238 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qsgA/info/1qsgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qsgA/nostruct-align/1qsgA.t04-thin90.a2m.gz, have 62703 columns in 257 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1aquA/nostruct-align/1aquA.t04-thin90.a2m.gz # 1aquA.t04-thin90.a2m with 374 sequences, total weight= 374 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.910823 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1aquA/info/1aquA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1aquA/nostruct-align/1aquA.t04-thin90.a2m.gz, have 62984 columns in 258 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1llnA/nostruct-align/1llnA.t04-thin90.a2m.gz # 1llnA.t04-thin90.a2m with 104 sequences, total weight= 104 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25432 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1llnA/info/1llnA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1llnA/nostruct-align/1llnA.t04-thin90.a2m.gz, have 63246 columns in 259 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hdoA/nostruct-align/1hdoA.t04-thin90.a2m.gz # 1hdoA.t04-thin90.a2m with 2215 sequences, total weight= 2215 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15617 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hdoA/info/1hdoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hdoA/nostruct-align/1hdoA.t04-thin90.a2m.gz, have 63451 columns in 260 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c1dA/nostruct-align/1c1dA.t04-thin90.a2m.gz # 1c1dA.t04-thin90.a2m with 592 sequences, total weight= 592 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19968 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c1dA/info/1c1dA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1c1dA/nostruct-align/1c1dA.t04-thin90.a2m.gz, have 63800 columns in 261 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vk5A/nostruct-align/1vk5A.t04-thin90.a2m.gz # 1vk5A.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18865 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vk5A/info/1vk5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vk5A/nostruct-align/1vk5A.t04-thin90.a2m.gz, have 63921 columns in 262 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ie9A/nostruct-align/1ie9A.t04-thin90.a2m.gz # 1ie9A.t04-thin90.a2m with 745 sequences, total weight= 745 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.825561 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ie9A/info/1ie9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1ie9A/nostruct-align/1ie9A.t04-thin90.a2m.gz, have 64176 columns in 263 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1ay7B/nostruct-align/1ay7B.t04-thin90.a2m.gz # 1ay7B.t04-thin90.a2m with 29 sequences, total weight= 29 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26778 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1ay7B/info/1ay7B.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1ay7B/nostruct-align/1ay7B.t04-thin90.a2m.gz, have 64265 columns in 264 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cruA/nostruct-align/1cruA.t04-thin90.a2m.gz # 1cruA.t04-thin90.a2m with 482 sequences, total weight= 482 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.953776 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cruA/info/1cruA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1cruA/nostruct-align/1cruA.t04-thin90.a2m.gz, have 64713 columns in 265 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1moq/nostruct-align/1moq.t04-thin90.a2m.gz # 1moq.t04-thin90.a2m with 910 sequences, total weight= 910 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03094 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1moq/info/1moq.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1moq/nostruct-align/1moq.t04-thin90.a2m.gz, have 65079 columns in 266 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iomA/nostruct-align/1iomA.t04-thin90.a2m.gz # 1iomA.t04-thin90.a2m with 295 sequences, total weight= 77.7611 avg weight= 0.263597 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30103 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iomA/info/1iomA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iomA/nostruct-align/1iomA.t04-thin90.a2m.gz, have 65453 columns in 267 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q92A/nostruct-align/1q92A.t04-thin90.a2m.gz # 1q92A.t04-thin90.a2m with 1208 sequences, total weight= 1208 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.928796 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q92A/info/1q92A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q92A/nostruct-align/1q92A.t04-thin90.a2m.gz, have 65648 columns in 268 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xm3A/nostruct-align/1xm3A.t04-thin90.a2m.gz # 1xm3A.t04-thin90.a2m with 538 sequences, total weight= 538 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06286 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xm3A/info/1xm3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xm3A/nostruct-align/1xm3A.t04-thin90.a2m.gz, have 65892 columns in 269 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1ja9A/nostruct-align/1ja9A.t04-thin90.a2m.gz # 1ja9A.t04-thin90.a2m with 2368 sequences, total weight= 98.8118 avg weight= 0.041728 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31765 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1ja9A/info/1ja9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1ja9A/nostruct-align/1ja9A.t04-thin90.a2m.gz, have 66151 columns in 270 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x9dA/nostruct-align/1x9dA.t04-thin90.a2m.gz # 1x9dA.t04-thin90.a2m with 175 sequences, total weight= 35.1324 avg weight= 0.200756 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x9dA/info/1x9dA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1x9dA/nostruct-align/1x9dA.t04-thin90.a2m.gz, have 66602 columns in 271 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v2bA/nostruct-align/1v2bA.t04-thin90.a2m.gz # 1v2bA.t04-thin90.a2m with 51 sequences, total weight= 30.6924 avg weight= 0.601811 38 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v2bA/info/1v2bA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v2bA/nostruct-align/1v2bA.t04-thin90.a2m.gz, have 66750 columns in 272 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gp6A/nostruct-align/1gp6A.t04-thin90.a2m.gz # 1gp6A.t04-thin90.a2m with 545 sequences, total weight= 545 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21974 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gp6A/info/1gp6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gp6A/nostruct-align/1gp6A.t04-thin90.a2m.gz, have 67099 columns in 273 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gtvA/nostruct-align/1gtvA.t04-thin90.a2m.gz # 1gtvA.t04-thin90.a2m with 1741 sequences, total weight= 1741 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.812707 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gtvA/info/1gtvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gtvA/nostruct-align/1gtvA.t04-thin90.a2m.gz, have 67307 columns in 274 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bqcA/nostruct-align/1bqcA.t04-thin90.a2m.gz # 1bqcA.t04-thin90.a2m with 1686 sequences, total weight= 1686 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.800412 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bqcA/info/1bqcA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1bqcA/nostruct-align/1bqcA.t04-thin90.a2m.gz, have 67609 columns in 275 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nwzA/nostruct-align/1nwzA.t04-thin90.a2m.gz # 1nwzA.t04-thin90.a2m with 8 sequences, total weight= 4.66201 avg weight= 0.582751 16 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nwzA/info/1nwzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nwzA/nostruct-align/1nwzA.t04-thin90.a2m.gz, have 67734 columns in 276 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wmqA/nostruct-align/1wmqA.t04-thin90.a2m.gz # 1wmqA.t04-thin90.a2m with 6 sequences, total weight= 3.44682 avg weight= 0.574469 13 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wmqA/info/1wmqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wmqA/nostruct-align/1wmqA.t04-thin90.a2m.gz, have 67877 columns in 277 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pinA/nostruct-align/1pinA.t04-thin90.a2m.gz # 1pinA.t04-thin90.a2m with 346 sequences, total weight= 346 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21184 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pinA/info/1pinA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pinA/nostruct-align/1pinA.t04-thin90.a2m.gz, have 68030 columns in 278 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jlvA/nostruct-align/1jlvA.t04-thin90.a2m.gz # 1jlvA.t04-thin90.a2m with 1693 sequences, total weight= 1693 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.994468 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jlvA/info/1jlvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jlvA/nostruct-align/1jlvA.t04-thin90.a2m.gz, have 68237 columns in 279 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kcqA/nostruct-align/1kcqA.t04-thin90.a2m.gz # 1kcqA.t04-thin90.a2m with 369 sequences, total weight= 369 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08601 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kcqA/info/1kcqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kcqA/nostruct-align/1kcqA.t04-thin90.a2m.gz, have 68340 columns in 280 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qh5A/nostruct-align/1qh5A.t04-thin90.a2m.gz # 1qh5A.t04-thin90.a2m with 2039 sequences, total weight= 2039 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.839767 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qh5A/info/1qh5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qh5A/nostruct-align/1qh5A.t04-thin90.a2m.gz, have 68600 columns in 281 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v0wA/nostruct-align/1v0wA.t04-thin90.a2m.gz # 1v0wA.t04-thin90.a2m with 591 sequences, total weight= 591 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.930589 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v0wA/info/1v0wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v0wA/nostruct-align/1v0wA.t04-thin90.a2m.gz, have 69096 columns in 282 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2i/2ilk/nostruct-align/2ilk.t04-thin90.a2m.gz # 2ilk.t04-thin90.a2m with 43 sequences, total weight= 27.6875 avg weight= 0.643896 37 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2i/2ilk/info/2ilk.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2i/2ilk/nostruct-align/2ilk.t04-thin90.a2m.gz, have 69251 columns in 283 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h2eA/nostruct-align/1h2eA.t04-thin90.a2m.gz # 1h2eA.t04-thin90.a2m with 864 sequences, total weight= 864 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03035 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h2eA/info/1h2eA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h2eA/nostruct-align/1h2eA.t04-thin90.a2m.gz, have 69458 columns in 284 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r5yA/nostruct-align/1r5yA.t04-thin90.a2m.gz # 1r5yA.t04-thin90.a2m with 203 sequences, total weight= 53.7721 avg weight= 0.264887 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r5yA/info/1r5yA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r5yA/nostruct-align/1r5yA.t04-thin90.a2m.gz, have 69819 columns in 285 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n13B/nostruct-align/1n13B.t04-thin90.a2m.gz # 1n13B.t04-thin90.a2m with 16 sequences, total weight= 9.35185 avg weight= 0.584491 22 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n13B/info/1n13B.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n13B/nostruct-align/1n13B.t04-thin90.a2m.gz, have 69931 columns in 286 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qusA/nostruct-align/1qusA.t04-thin90.a2m.gz # 1qusA.t04-thin90.a2m with 126 sequences, total weight= 87.5179 avg weight= 0.694586 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qusA/info/1qusA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qusA/nostruct-align/1qusA.t04-thin90.a2m.gz, have 70243 columns in 287 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mc2A/nostruct-align/1mc2A.t04-thin90.a2m.gz # 1mc2A.t04-thin90.a2m with 225 sequences, total weight= 21.8227 avg weight= 0.09699 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mc2A/info/1mc2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mc2A/nostruct-align/1mc2A.t04-thin90.a2m.gz, have 70365 columns in 288 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vsrA/nostruct-align/1vsrA.t04-thin90.a2m.gz # 1vsrA.t04-thin90.a2m with 23 sequences, total weight= 13.0207 avg weight= 0.566115 29 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vsrA/info/1vsrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vsrA/nostruct-align/1vsrA.t04-thin90.a2m.gz, have 70499 columns in 289 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ooeA/nostruct-align/1ooeA.t04-thin90.a2m.gz # 1ooeA.t04-thin90.a2m with 2339 sequences, total weight= 91.3282 avg weight= 0.0390458 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31377 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ooeA/info/1ooeA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ooeA/nostruct-align/1ooeA.t04-thin90.a2m.gz, have 70734 columns in 290 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1flmA/nostruct-align/1flmA.t04-thin90.a2m.gz # 1flmA.t04-thin90.a2m with 10 sequences, total weight= 5.81372 avg weight= 0.581372 19 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1flmA/info/1flmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1flmA/nostruct-align/1flmA.t04-thin90.a2m.gz, have 70856 columns in 291 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xg5A/nostruct-align/1xg5A.t04-thin90.a2m.gz # 1xg5A.t04-thin90.a2m with 2359 sequences, total weight= 80.2475 avg weight= 0.0340176 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31287 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xg5A/info/1xg5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xg5A/nostruct-align/1xg5A.t04-thin90.a2m.gz, have 71110 columns in 292 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gci/nostruct-align/1gci.t04-thin90.a2m.gz # 1gci.t04-thin90.a2m with 893 sequences, total weight= 893 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21285 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gci/info/1gci.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gci/nostruct-align/1gci.t04-thin90.a2m.gz, have 71379 columns in 293 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vm0A/nostruct-align/1vm0A.t04-thin90.a2m.gz # 1vm0A.t04-thin90.a2m with 5 sequences, total weight= 2.95056 avg weight= 0.590112 10 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vm0A/info/1vm0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vm0A/nostruct-align/1vm0A.t04-thin90.a2m.gz, have 71472 columns in 294 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1usgA/nostruct-align/1usgA.t04-thin90.a2m.gz # 1usgA.t04-thin90.a2m with 1100 sequences, total weight= 1100 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.877159 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1usgA/info/1usgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1usgA/nostruct-align/1usgA.t04-thin90.a2m.gz, have 71817 columns in 295 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1unqA/nostruct-align/1unqA.t04-thin90.a2m.gz # 1unqA.t04-thin90.a2m with 1234 sequences, total weight= 1234 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.896505 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1unqA/info/1unqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1unqA/nostruct-align/1unqA.t04-thin90.a2m.gz, have 71934 columns in 296 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m1nA/nostruct-align/1m1nA.t04-thin90.a2m.gz # 1m1nA.t04-thin90.a2m with 398 sequences, total weight= 398 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21889 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m1nA/info/1m1nA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m1nA/nostruct-align/1m1nA.t04-thin90.a2m.gz, have 72411 columns in 297 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1se8A/nostruct-align/1se8A.t04-thin90.a2m.gz # 1se8A.t04-thin90.a2m with 229 sequences, total weight= 41.2159 avg weight= 0.179982 34 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1se8A/info/1se8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1se8A/nostruct-align/1se8A.t04-thin90.a2m.gz, have 72624 columns in 298 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pot/nostruct-align/1pot.t04-thin90.a2m.gz # 1pot.t04-thin90.a2m with 1412 sequences, total weight= 1412 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.851061 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pot/info/1pot.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pot/nostruct-align/1pot.t04-thin90.a2m.gz, have 72946 columns in 299 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w6sB/nostruct-align/1w6sB.t04-thin90.a2m.gz # 1w6sB.t04-thin90.a2m with 9 sequences, total weight= 3.0755 avg weight= 0.341722 14 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w6sB/info/1w6sB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w6sB/nostruct-align/1w6sB.t04-thin90.a2m.gz, have 73018 columns in 300 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wlgA/nostruct-align/1wlgA.t04-thin90.a2m.gz # 1wlgA.t04-thin90.a2m with 247 sequences, total weight= 118.389 avg weight= 0.479306 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30154 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wlgA/info/1wlgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wlgA/nostruct-align/1wlgA.t04-thin90.a2m.gz, have 73311 columns in 301 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r6jA/nostruct-align/1r6jA.t04-thin90.a2m.gz # 1r6jA.t04-thin90.a2m with 349 sequences, total weight= 76.7403 avg weight= 0.219886 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30404 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r6jA/info/1r6jA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r6jA/nostruct-align/1r6jA.t04-thin90.a2m.gz, have 73393 columns in 302 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iqcA/nostruct-align/1iqcA.t04-thin90.a2m.gz # 1iqcA.t04-thin90.a2m with 235 sequences, total weight= 235 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05529 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iqcA/info/1iqcA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iqcA/nostruct-align/1iqcA.t04-thin90.a2m.gz, have 73701 columns in 303 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p9aG/nostruct-align/1p9aG.t04-thin90.a2m.gz # 1p9aG.t04-thin90.a2m with 3068 sequences, total weight= 3068 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02896 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p9aG/info/1p9aG.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p9aG/nostruct-align/1p9aG.t04-thin90.a2m.gz, have 73967 columns in 304 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1z/1z57A/nostruct-align/1z57A.t04-thin90.a2m.gz # 1z57A.t04-thin90.a2m with 1214 sequences, total weight= 182.271 avg weight= 0.150141 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32301 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1z/1z57A/info/1z57A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1z/1z57A/nostruct-align/1z57A.t04-thin90.a2m.gz, have 74300 columns in 305 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yg9A/nostruct-align/1yg9A.t04-thin90.a2m.gz # 1yg9A.t04-thin90.a2m with 888 sequences, total weight= 888 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22234 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yg9A/info/1yg9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1yg9A/nostruct-align/1yg9A.t04-thin90.a2m.gz, have 74630 columns in 306 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oewA/nostruct-align/1oewA.t04-thin90.a2m.gz # 1oewA.t04-thin90.a2m with 617 sequences, total weight= 617 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24682 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oewA/info/1oewA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oewA/nostruct-align/1oewA.t04-thin90.a2m.gz, have 74958 columns in 307 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hz4A/nostruct-align/1hz4A.t04-thin90.a2m.gz # 1hz4A.t04-thin90.a2m with 9 sequences, total weight= 3.63519 avg weight= 0.403909 14 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hz4A/info/1hz4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hz4A/nostruct-align/1hz4A.t04-thin90.a2m.gz, have 75324 columns in 308 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wer/nostruct-align/1wer.t04-thin90.a2m.gz # 1wer.t04-thin90.a2m with 83 sequences, total weight= 83 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17352 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wer/info/1wer.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wer/nostruct-align/1wer.t04-thin90.a2m.gz, have 75648 columns in 309 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1ne9A/nostruct-align/1ne9A.t04-thin90.a2m.gz # 1ne9A.t04-thin90.a2m with 250 sequences, total weight= 250 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.908445 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1ne9A/info/1ne9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1ne9A/nostruct-align/1ne9A.t04-thin90.a2m.gz, have 75983 columns in 310 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qe3A/nostruct-align/1qe3A.t04-thin90.a2m.gz # 1qe3A.t04-thin90.a2m with 1949 sequences, total weight= 1949 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.962873 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qe3A/info/1qe3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qe3A/nostruct-align/1qe3A.t04-thin90.a2m.gz, have 76450 columns in 311 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qnaA/nostruct-align/1qnaA.t04-thin90.a2m.gz # 1qnaA.t04-thin90.a2m with 73 sequences, total weight= 23.0863 avg weight= 0.31625 40 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qnaA/info/1qnaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qnaA/nostruct-align/1qnaA.t04-thin90.a2m.gz, have 76632 columns in 312 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wouA/nostruct-align/1wouA.t04-thin90.a2m.gz # 1wouA.t04-thin90.a2m with 1589 sequences, total weight= 1589 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13879 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wouA/info/1wouA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wouA/nostruct-align/1wouA.t04-thin90.a2m.gz, have 76751 columns in 313 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rp0A/nostruct-align/1rp0A.t04-thin90.a2m.gz # 1rp0A.t04-thin90.a2m with 2182 sequences, total weight= 2182 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.855836 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rp0A/info/1rp0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rp0A/nostruct-align/1rp0A.t04-thin90.a2m.gz, have 77029 columns in 314 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3p/3proC/nostruct-align/3proC.t04-thin90.a2m.gz # 3proC.t04-thin90.a2m with 22 sequences, total weight= 15.5295 avg weight= 0.705888 26 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3p/3proC/info/3proC.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/3p/3proC/nostruct-align/3proC.t04-thin90.a2m.gz, have 77179 columns in 315 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ukfA/nostruct-align/1ukfA.t04-thin90.a2m.gz # 1ukfA.t04-thin90.a2m with 18 sequences, total weight= 18 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17166 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ukfA/info/1ukfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ukfA/nostruct-align/1ukfA.t04-thin90.a2m.gz, have 77367 columns in 316 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v7rA/nostruct-align/1v7rA.t04-thin90.a2m.gz # 1v7rA.t04-thin90.a2m with 187 sequences, total weight= 28.0688 avg weight= 0.150101 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v7rA/info/1v7rA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v7rA/nostruct-align/1v7rA.t04-thin90.a2m.gz, have 77553 columns in 317 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nz0A/nostruct-align/1nz0A.t04-thin90.a2m.gz # 1nz0A.t04-thin90.a2m with 129 sequences, total weight= 96.3981 avg weight= 0.747272 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3007 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nz0A/info/1nz0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nz0A/nostruct-align/1nz0A.t04-thin90.a2m.gz, have 77662 columns in 318 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p4oA/nostruct-align/1p4oA.t04-thin90.a2m.gz # 1p4oA.t04-thin90.a2m with 1311 sequences, total weight= 86.6128 avg weight= 0.0660662 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32013 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p4oA/info/1p4oA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p4oA/nostruct-align/1p4oA.t04-thin90.a2m.gz, have 77970 columns in 319 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1ajsA/nostruct-align/1ajsA.t04-thin90.a2m.gz # 1ajsA.t04-thin90.a2m with 2183 sequences, total weight= 2183 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.964115 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1ajsA/info/1ajsA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1ajsA/nostruct-align/1ajsA.t04-thin90.a2m.gz, have 78382 columns in 320 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c3cA/nostruct-align/1c3cA.t04-thin90.a2m.gz # 1c3cA.t04-thin90.a2m with 587 sequences, total weight= 412.608 avg weight= 0.70291 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30579 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c3cA/info/1c3cA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1c3cA/nostruct-align/1c3cA.t04-thin90.a2m.gz, have 78806 columns in 321 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mzbA/nostruct-align/1mzbA.t04-thin90.a2m.gz # 1mzbA.t04-thin90.a2m with 325 sequences, total weight= 325 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28614 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mzbA/info/1mzbA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mzbA/nostruct-align/1mzbA.t04-thin90.a2m.gz, have 78939 columns in 322 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wvgA/nostruct-align/1wvgA.t04-thin90.a2m.gz # 1wvgA.t04-thin90.a2m with 2085 sequences, total weight= 2085 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13035 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wvgA/info/1wvgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wvgA/nostruct-align/1wvgA.t04-thin90.a2m.gz, have 79291 columns in 323 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xq6A/nostruct-align/1xq6A.t04-thin90.a2m.gz # 1xq6A.t04-thin90.a2m with 2150 sequences, total weight= 2150 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1306 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xq6A/info/1xq6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xq6A/nostruct-align/1xq6A.t04-thin90.a2m.gz, have 79544 columns in 324 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b6a/nostruct-align/1b6a.t04-thin90.a2m.gz # 1b6a.t04-thin90.a2m with 782 sequences, total weight= 782 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15567 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b6a/info/1b6a.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1b6a/nostruct-align/1b6a.t04-thin90.a2m.gz, have 79899 columns in 325 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x8gA/nostruct-align/1x8gA.t04-thin90.a2m.gz # 1x8gA.t04-thin90.a2m with 2214 sequences, total weight= 2214 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.839411 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x8gA/info/1x8gA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1x8gA/nostruct-align/1x8gA.t04-thin90.a2m.gz, have 80123 columns in 326 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c1kA/nostruct-align/1c1kA.t04-thin90.a2m.gz # 1c1kA.t04-thin90.a2m with 8 sequences, total weight= 4.3472 avg weight= 0.5434 15 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c1kA/info/1c1kA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1c1kA/nostruct-align/1c1kA.t04-thin90.a2m.gz, have 80340 columns in 327 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3v/3vub/nostruct-align/3vub.t04-thin90.a2m.gz # 3vub.t04-thin90.a2m with 11 sequences, total weight= 7.94145 avg weight= 0.72195 17 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3v/3vub/info/3vub.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/3v/3vub/nostruct-align/3vub.t04-thin90.a2m.gz, have 80441 columns in 328 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2baa/nostruct-align/2baa.t04-thin90.a2m.gz # 2baa.t04-thin90.a2m with 241 sequences, total weight= 41.5524 avg weight= 0.172417 42 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2baa/info/2baa.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2b/2baa/nostruct-align/2baa.t04-thin90.a2m.gz, have 80684 columns in 329 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xsqA/nostruct-align/1xsqA.t04-thin90.a2m.gz # 1xsqA.t04-thin90.a2m with 60 sequences, total weight= 26.7618 avg weight= 0.44603 42 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xsqA/info/1xsqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xsqA/nostruct-align/1xsqA.t04-thin90.a2m.gz, have 80838 columns in 330 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oruA/nostruct-align/1oruA.t04-thin90.a2m.gz # 1oruA.t04-thin90.a2m with 81 sequences, total weight= 67.5794 avg weight= 0.834314 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oruA/info/1oruA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oruA/nostruct-align/1oruA.t04-thin90.a2m.gz, have 81020 columns in 331 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cqxA/nostruct-align/1cqxA.t04-thin90.a2m.gz # 1cqxA.t04-thin90.a2m with 1237 sequences, total weight= 1237 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.941295 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cqxA/info/1cqxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1cqxA/nostruct-align/1cqxA.t04-thin90.a2m.gz, have 81423 columns in 332 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1txlA/nostruct-align/1txlA.t04-thin90.a2m.gz # 1txlA.t04-thin90.a2m with 23 sequences, total weight= 9.46192 avg weight= 0.411388 22 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1txlA/info/1txlA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1txlA/nostruct-align/1txlA.t04-thin90.a2m.gz, have 81611 columns in 333 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ud9A/nostruct-align/1ud9A.t04-thin90.a2m.gz # 1ud9A.t04-thin90.a2m with 144 sequences, total weight= 144 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16051 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ud9A/info/1ud9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ud9A/nostruct-align/1ud9A.t04-thin90.a2m.gz, have 81853 columns in 334 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t82A/nostruct-align/1t82A.t04-thin90.a2m.gz # 1t82A.t04-thin90.a2m with 177 sequences, total weight= 177 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11305 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t82A/info/1t82A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t82A/nostruct-align/1t82A.t04-thin90.a2m.gz, have 81996 columns in 335 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m1qA/nostruct-align/1m1qA.t04-thin90.a2m.gz # 1m1qA.t04-thin90.a2m with 47 sequences, total weight= 47 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21848 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m1qA/info/1m1qA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m1qA/nostruct-align/1m1qA.t04-thin90.a2m.gz, have 82086 columns in 336 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nnxA/nostruct-align/1nnxA.t04-thin90.a2m.gz # 1nnxA.t04-thin90.a2m with 33 sequences, total weight= 14.979 avg weight= 0.45391 30 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nnxA/info/1nnxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nnxA/nostruct-align/1nnxA.t04-thin90.a2m.gz, have 82179 columns in 337 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fm0D/nostruct-align/1fm0D.t04-thin90.a2m.gz # 1fm0D.t04-thin90.a2m with 167 sequences, total weight= 47.696 avg weight= 0.285605 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30044 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fm0D/info/1fm0D.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fm0D/nostruct-align/1fm0D.t04-thin90.a2m.gz, have 82260 columns in 338 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v7wA/nostruct-align/1v7wA.t04-thin90.a2m.gz # 1v7wA.t04-thin90.a2m with 709 sequences, total weight= 709 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.761675 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v7wA/info/1v7wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v7wA/nostruct-align/1v7wA.t04-thin90.a2m.gz, have 83039 columns in 339 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hd2A/nostruct-align/1hd2A.t04-thin90.a2m.gz # 1hd2A.t04-thin90.a2m with 958 sequences, total weight= 958 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24739 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hd2A/info/1hd2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hd2A/nostruct-align/1hd2A.t04-thin90.a2m.gz, have 83200 columns in 340 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pa1A/nostruct-align/1pa1A.t04-thin90.a2m.gz # 1pa1A.t04-thin90.a2m with 645 sequences, total weight= 645 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05548 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pa1A/info/1pa1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pa1A/nostruct-align/1pa1A.t04-thin90.a2m.gz, have 83502 columns in 341 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1euwA/nostruct-align/1euwA.t04-thin90.a2m.gz # 1euwA.t04-thin90.a2m with 418 sequences, total weight= 418 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22333 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1euwA/info/1euwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1euwA/nostruct-align/1euwA.t04-thin90.a2m.gz, have 83638 columns in 342 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1ah7/nostruct-align/1ah7.t04-thin90.a2m.gz # 1ah7.t04-thin90.a2m with 78 sequences, total weight= 78 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15905 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1ah7/info/1ah7.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1ah7/nostruct-align/1ah7.t04-thin90.a2m.gz, have 83883 columns in 343 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f6bA/nostruct-align/1f6bA.t04-thin90.a2m.gz # 1f6bA.t04-thin90.a2m with 1151 sequences, total weight= 789.601 avg weight= 0.686013 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30954 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f6bA/info/1f6bA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f6bA/nostruct-align/1f6bA.t04-thin90.a2m.gz, have 84059 columns in 344 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vqsA/nostruct-align/1vqsA.t04-thin90.a2m.gz # 1vqsA.t04-thin90.a2m with 93 sequences, total weight= 55.7429 avg weight= 0.599386 41 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vqsA/info/1vqsA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vqsA/nostruct-align/1vqsA.t04-thin90.a2m.gz, have 84169 columns in 345 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qksA/nostruct-align/1qksA.t04-thin90.a2m.gz # 1qksA.t04-thin90.a2m with 2093 sequences, total weight= 2093 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.948686 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qksA/info/1qksA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qksA/nostruct-align/1qksA.t04-thin90.a2m.gz, have 84728 columns in 346 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h6fA/nostruct-align/1h6fA.t04-thin90.a2m.gz # 1h6fA.t04-thin90.a2m with 141 sequences, total weight= 29.6915 avg weight= 0.210578 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h6fA/info/1h6fA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h6fA/nostruct-align/1h6fA.t04-thin90.a2m.gz, have 84912 columns in 347 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q7lA/nostruct-align/1q7lA.t04-thin90.a2m.gz # 1q7lA.t04-thin90.a2m with 980 sequences, total weight= 980 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10473 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q7lA/info/1q7lA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q7lA/nostruct-align/1q7lA.t04-thin90.a2m.gz, have 85104 columns in 348 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1te2A/nostruct-align/1te2A.t04-thin90.a2m.gz # 1te2A.t04-thin90.a2m with 2361 sequences, total weight= 2361 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.840289 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1te2A/info/1te2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1te2A/nostruct-align/1te2A.t04-thin90.a2m.gz, have 85322 columns in 349 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q0pA/nostruct-align/1q0pA.t04-thin90.a2m.gz # 1q0pA.t04-thin90.a2m with 949 sequences, total weight= 949 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05612 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q0pA/info/1q0pA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q0pA/nostruct-align/1q0pA.t04-thin90.a2m.gz, have 85514 columns in 350 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xe0A/nostruct-align/1xe0A.t04-thin90.a2m.gz # 1xe0A.t04-thin90.a2m with 35 sequences, total weight= 10.4219 avg weight= 0.29777 23 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xe0A/info/1xe0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xe0A/nostruct-align/1xe0A.t04-thin90.a2m.gz, have 85622 columns in 351 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vziA/nostruct-align/1vziA.t04-thin90.a2m.gz # 1vziA.t04-thin90.a2m with 29 sequences, total weight= 13.0497 avg weight= 0.449989 30 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vziA/info/1vziA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vziA/nostruct-align/1vziA.t04-thin90.a2m.gz, have 85747 columns in 352 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vybA/nostruct-align/1vybA.t04-thin90.a2m.gz # 1vybA.t04-thin90.a2m with 1140 sequences, total weight= 1140 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.848252 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vybA/info/1vybA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vybA/nostruct-align/1vybA.t04-thin90.a2m.gz, have 85983 columns in 353 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uptB/nostruct-align/1uptB.t04-thin90.a2m.gz # 1uptB.t04-thin90.a2m with 5 sequences, total weight= 2.90339 avg weight= 0.580677 9 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uptB/info/1uptB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uptB/nostruct-align/1uptB.t04-thin90.a2m.gz, have 86041 columns in 354 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o4vA/nostruct-align/1o4vA.t04-thin90.a2m.gz # 1o4vA.t04-thin90.a2m with 193 sequences, total weight= 19.2856 avg weight= 0.0999252 42 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o4vA/info/1o4vA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o4vA/nostruct-align/1o4vA.t04-thin90.a2m.gz, have 86210 columns in 355 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gq8A/nostruct-align/1gq8A.t04-thin90.a2m.gz # 1gq8A.t04-thin90.a2m with 306 sequences, total weight= 306 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21144 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gq8A/info/1gq8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gq8A/nostruct-align/1gq8A.t04-thin90.a2m.gz, have 86529 columns in 356 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pz4A/nostruct-align/1pz4A.t04-thin90.a2m.gz # 1pz4A.t04-thin90.a2m with 86 sequences, total weight= 75.6615 avg weight= 0.879785 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pz4A/info/1pz4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pz4A/nostruct-align/1pz4A.t04-thin90.a2m.gz, have 86642 columns in 357 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bjiA/nostruct-align/2bjiA.t04-thin90.a2m.gz # 2bjiA.t04-thin90.a2m with 766 sequences, total weight= 766 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13233 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bjiA/info/2bjiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2b/2bjiA/nostruct-align/2bjiA.t04-thin90.a2m.gz, have 86916 columns in 358 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qmvA/nostruct-align/1qmvA.t04-thin90.a2m.gz # 1qmvA.t04-thin90.a2m with 1636 sequences, total weight= 1636 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0899 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qmvA/info/1qmvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qmvA/nostruct-align/1qmvA.t04-thin90.a2m.gz, have 87113 columns in 359 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qgiA/nostruct-align/1qgiA.t04-thin90.a2m.gz # 1qgiA.t04-thin90.a2m with 19 sequences, total weight= 13.6698 avg weight= 0.719462 22 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qgiA/info/1qgiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qgiA/nostruct-align/1qgiA.t04-thin90.a2m.gz, have 87372 columns in 360 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sfsA/nostruct-align/1sfsA.t04-thin90.a2m.gz # 1sfsA.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.993228 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sfsA/info/1sfsA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sfsA/nostruct-align/1sfsA.t04-thin90.a2m.gz, have 87585 columns in 361 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ru4A/nostruct-align/1ru4A.t04-thin90.a2m.gz # 1ru4A.t04-thin90.a2m with 729 sequences, total weight= 729 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.839966 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ru4A/info/1ru4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1ru4A/nostruct-align/1ru4A.t04-thin90.a2m.gz, have 87985 columns in 362 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m33A/nostruct-align/1m33A.t04-thin90.a2m.gz # 1m33A.t04-thin90.a2m with 2336 sequences, total weight= 2336 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.809958 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m33A/info/1m33A.stride-mixed.near-backbone-11 WARNING: skipping e, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1m/1m33A/nostruct-align/1m33A.t04-thin90.a2m.gz, have 88240 columns in 363 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t4hA/nostruct-align/1t4hA.t04-thin90.a2m.gz # 1t4hA.t04-thin90.a2m with 1154 sequences, total weight= 40.2313 avg weight= 0.0348625 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t4hA/info/1t4hA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t4hA/nostruct-align/1t4hA.t04-thin90.a2m.gz, have 88510 columns in 364 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1igqA/nostruct-align/1igqA.t04-thin90.a2m.gz # 1igqA.t04-thin90.a2m with 4 sequences, total weight= 2.20688 avg weight= 0.551719 8 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1igqA/info/1igqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1igqA/nostruct-align/1igqA.t04-thin90.a2m.gz, have 88564 columns in 365 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mkkA/nostruct-align/1mkkA.t04-thin90.a2m.gz # 1mkkA.t04-thin90.a2m with 42 sequences, total weight= 16.9754 avg weight= 0.404175 37 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mkkA/info/1mkkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mkkA/nostruct-align/1mkkA.t04-thin90.a2m.gz, have 88657 columns in 366 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pyfA/nostruct-align/1pyfA.t04-thin90.a2m.gz # 1pyfA.t04-thin90.a2m with 1307 sequences, total weight= 1307 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26138 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pyfA/info/1pyfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pyfA/nostruct-align/1pyfA.t04-thin90.a2m.gz, have 88968 columns in 367 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rxqA/nostruct-align/1rxqA.t04-thin90.a2m.gz # 1rxqA.t04-thin90.a2m with 57 sequences, total weight= 57 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.934914 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rxqA/info/1rxqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rxqA/nostruct-align/1rxqA.t04-thin90.a2m.gz, have 89142 columns in 368 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1ql0A/nostruct-align/1ql0A.t04-thin90.a2m.gz # 1ql0A.t04-thin90.a2m with 115 sequences, total weight= 115 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14097 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1ql0A/info/1ql0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1ql0A/nostruct-align/1ql0A.t04-thin90.a2m.gz, have 89383 columns in 369 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qnrA/nostruct-align/1qnrA.t04-thin90.a2m.gz # 1qnrA.t04-thin90.a2m with 1624 sequences, total weight= 1624 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.789655 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qnrA/info/1qnrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qnrA/nostruct-align/1qnrA.t04-thin90.a2m.gz, have 89727 columns in 370 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u07A/nostruct-align/1u07A.t04-thin90.a2m.gz # 1u07A.t04-thin90.a2m with 196 sequences, total weight= 122.876 avg weight= 0.62692 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30205 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u07A/info/1u07A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1u07A/nostruct-align/1u07A.t04-thin90.a2m.gz, have 89817 columns in 371 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sh8A/nostruct-align/1sh8A.t04-thin90.a2m.gz # 1sh8A.t04-thin90.a2m with 66 sequences, total weight= 66 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19934 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sh8A/info/1sh8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sh8A/nostruct-align/1sh8A.t04-thin90.a2m.gz, have 89970 columns in 372 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j71A/nostruct-align/1j71A.t04-thin90.a2m.gz # 1j71A.t04-thin90.a2m with 670 sequences, total weight= 670 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23242 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j71A/info/1j71A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j71A/nostruct-align/1j71A.t04-thin90.a2m.gz, have 90304 columns in 373 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tr0A/nostruct-align/1tr0A.t04-thin90.a2m.gz # 1tr0A.t04-thin90.a2m with 88 sequences, total weight= 88 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13775 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tr0A/info/1tr0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tr0A/nostruct-align/1tr0A.t04-thin90.a2m.gz, have 90410 columns in 374 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h32A/nostruct-align/1h32A.t04-thin90.a2m.gz # 1h32A.t04-thin90.a2m with 445 sequences, total weight= 445 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00901 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h32A/info/1h32A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h32A/nostruct-align/1h32A.t04-thin90.a2m.gz, have 90671 columns in 375 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bg6/nostruct-align/1bg6.t04-thin90.a2m.gz # 1bg6.t04-thin90.a2m with 2106 sequences, total weight= 2106 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.890582 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bg6/info/1bg6.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1bg6/nostruct-align/1bg6.t04-thin90.a2m.gz, have 91020 columns in 376 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1idpA/nostruct-align/1idpA.t04-thin90.a2m.gz # 1idpA.t04-thin90.a2m with 11 sequences, total weight= 4.35888 avg weight= 0.396262 15 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1idpA/info/1idpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1idpA/nostruct-align/1idpA.t04-thin90.a2m.gz, have 91167 columns in 377 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u5xA/nostruct-align/1u5xA.t04-thin90.a2m.gz # 1u5xA.t04-thin90.a2m with 122 sequences, total weight= 78.7797 avg weight= 0.645735 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30063 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u5xA/info/1u5xA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1u5xA/nostruct-align/1u5xA.t04-thin90.a2m.gz, have 91297 columns in 378 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kmvA/nostruct-align/1kmvA.t04-thin90.a2m.gz # 1kmvA.t04-thin90.a2m with 367 sequences, total weight= 367 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1435 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kmvA/info/1kmvA.stride-mixed.near-backbone-11 WARNING: skipping b, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1k/1kmvA/nostruct-align/1kmvA.t04-thin90.a2m.gz, have 91482 columns in 379 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oi6A/nostruct-align/1oi6A.t04-thin90.a2m.gz # 1oi6A.t04-thin90.a2m with 245 sequences, total weight= 55.7743 avg weight= 0.22765 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oi6A/info/1oi6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oi6A/nostruct-align/1oi6A.t04-thin90.a2m.gz, have 91684 columns in 380 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uq5A/nostruct-align/1uq5A.t04-thin90.a2m.gz # 1uq5A.t04-thin90.a2m with 118 sequences, total weight= 118 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26098 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uq5A/info/1uq5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uq5A/nostruct-align/1uq5A.t04-thin90.a2m.gz, have 91947 columns in 381 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oxjA/nostruct-align/1oxjA.t04-thin90.a2m.gz # 1oxjA.t04-thin90.a2m with 9 sequences, total weight= 8.35563 avg weight= 0.928403 15 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oxjA/info/1oxjA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oxjA/nostruct-align/1oxjA.t04-thin90.a2m.gz, have 92117 columns in 382 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nxmA/nostruct-align/1nxmA.t04-thin90.a2m.gz # 1nxmA.t04-thin90.a2m with 246 sequences, total weight= 58.5524 avg weight= 0.238018 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nxmA/info/1nxmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nxmA/nostruct-align/1nxmA.t04-thin90.a2m.gz, have 92311 columns in 383 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s9rA/nostruct-align/1s9rA.t04-thin90.a2m.gz # 1s9rA.t04-thin90.a2m with 215 sequences, total weight= 215 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13177 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s9rA/info/1s9rA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1s9rA/nostruct-align/1s9rA.t04-thin90.a2m.gz, have 92720 columns in 384 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i52A/nostruct-align/1i52A.t04-thin90.a2m.gz # 1i52A.t04-thin90.a2m with 1688 sequences, total weight= 1688 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00825 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i52A/info/1i52A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i52A/nostruct-align/1i52A.t04-thin90.a2m.gz, have 92945 columns in 385 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p5vB/nostruct-align/1p5vB.t04-thin90.a2m.gz # 1p5vB.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.614906 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p5vB/info/1p5vB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p5vB/nostruct-align/1p5vB.t04-thin90.a2m.gz, have 93081 columns in 386 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nq7A/nostruct-align/1nq7A.t04-thin90.a2m.gz # 1nq7A.t04-thin90.a2m with 912 sequences, total weight= 912 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.860266 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nq7A/info/1nq7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nq7A/nostruct-align/1nq7A.t04-thin90.a2m.gz, have 93325 columns in 387 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1is3A/nostruct-align/1is3A.t04-thin90.a2m.gz # 1is3A.t04-thin90.a2m with 212 sequences, total weight= 212 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24272 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1is3A/info/1is3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1is3A/nostruct-align/1is3A.t04-thin90.a2m.gz, have 93459 columns in 388 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l3kA/nostruct-align/1l3kA.t04-thin90.a2m.gz # 1l3kA.t04-thin90.a2m with 1808 sequences, total weight= 1808 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11165 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l3kA/info/1l3kA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1l3kA/nostruct-align/1l3kA.t04-thin90.a2m.gz, have 93622 columns in 389 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nkr/nostruct-align/1nkr.t04-thin90.a2m.gz # 1nkr.t04-thin90.a2m with 2939 sequences, total weight= 2939 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.934044 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nkr/info/1nkr.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nkr/nostruct-align/1nkr.t04-thin90.a2m.gz, have 93817 columns in 390 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vh4A/nostruct-align/1vh4A.t04-thin90.a2m.gz # 1vh4A.t04-thin90.a2m with 231 sequences, total weight= 231 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23958 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vh4A/info/1vh4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vh4A/nostruct-align/1vh4A.t04-thin90.a2m.gz, have 94227 columns in 391 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o97C/nostruct-align/1o97C.t04-thin90.a2m.gz # 1o97C.t04-thin90.a2m with 222 sequences, total weight= 68.4772 avg weight= 0.308456 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30056 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o97C/info/1o97C.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o97C/nostruct-align/1o97C.t04-thin90.a2m.gz, have 94478 columns in 392 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tyjA/nostruct-align/1tyjA.t04-thin90.a2m.gz # 1tyjA.t04-thin90.a2m with 26 sequences, total weight= 6.07171 avg weight= 0.233527 23 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tyjA/info/1tyjA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tyjA/nostruct-align/1tyjA.t04-thin90.a2m.gz, have 94648 columns in 393 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vd6A/nostruct-align/1vd6A.t04-thin90.a2m.gz # 1vd6A.t04-thin90.a2m with 533 sequences, total weight= 533 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12876 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vd6A/info/1vd6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vd6A/nostruct-align/1vd6A.t04-thin90.a2m.gz, have 94866 columns in 394 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vpmA/nostruct-align/1vpmA.t04-thin90.a2m.gz # 1vpmA.t04-thin90.a2m with 652 sequences, total weight= 652 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0329 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vpmA/info/1vpmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vpmA/nostruct-align/1vpmA.t04-thin90.a2m.gz, have 95021 columns in 395 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k77A/nostruct-align/1k77A.t04-thin90.a2m.gz # 1k77A.t04-thin90.a2m with 684 sequences, total weight= 684 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.90569 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k77A/info/1k77A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k77A/nostruct-align/1k77A.t04-thin90.a2m.gz, have 95281 columns in 396 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rzhM/nostruct-align/1rzhM.t04-thin90.a2m.gz # 1rzhM.t04-thin90.a2m with 176 sequences, total weight= 16.1736 avg weight= 0.0918952 32 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rzhM/info/1rzhM.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rzhM/nostruct-align/1rzhM.t04-thin90.a2m.gz, have 95582 columns in 397 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rwzA/nostruct-align/1rwzA.t04-thin90.a2m.gz # 1rwzA.t04-thin90.a2m with 129 sequences, total weight= 129 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18245 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rwzA/info/1rwzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rwzA/nostruct-align/1rwzA.t04-thin90.a2m.gz, have 95826 columns in 398 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iu8A/nostruct-align/1iu8A.t04-thin90.a2m.gz # 1iu8A.t04-thin90.a2m with 86 sequences, total weight= 55.5452 avg weight= 0.645875 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iu8A/info/1iu8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iu8A/nostruct-align/1iu8A.t04-thin90.a2m.gz, have 96032 columns in 399 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jh6A/nostruct-align/1jh6A.t04-thin90.a2m.gz # 1jh6A.t04-thin90.a2m with 89 sequences, total weight= 89 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06694 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jh6A/info/1jh6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jh6A/nostruct-align/1jh6A.t04-thin90.a2m.gz, have 96213 columns in 400 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nykA/nostruct-align/1nykA.t04-thin90.a2m.gz # 1nykA.t04-thin90.a2m with 831 sequences, total weight= 831 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.976998 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nykA/info/1nykA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nykA/nostruct-align/1nykA.t04-thin90.a2m.gz, have 96369 columns in 401 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w0nA/nostruct-align/1w0nA.t04-thin90.a2m.gz # 1w0nA.t04-thin90.a2m with 4 sequences, total weight= 2.89094 avg weight= 0.722735 10 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w0nA/info/1w0nA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w0nA/nostruct-align/1w0nA.t04-thin90.a2m.gz, have 96489 columns in 402 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u7lA/nostruct-align/1u7lA.t04-thin90.a2m.gz # 1u7lA.t04-thin90.a2m with 49 sequences, total weight= 18.6234 avg weight= 0.38007 33 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u7lA/info/1u7lA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1u7lA/nostruct-align/1u7lA.t04-thin90.a2m.gz, have 96853 columns in 403 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xgkA/nostruct-align/1xgkA.t04-thin90.a2m.gz # 1xgkA.t04-thin90.a2m with 2179 sequences, total weight= 2179 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04733 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xgkA/info/1xgkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xgkA/nostruct-align/1xgkA.t04-thin90.a2m.gz, have 97178 columns in 404 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q8dA/nostruct-align/1q8dA.t04-thin90.a2m.gz # 1q8dA.t04-thin90.a2m with 20 sequences, total weight= 4.64664 avg weight= 0.232332 21 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q8dA/info/1q8dA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q8dA/nostruct-align/1q8dA.t04-thin90.a2m.gz, have 97278 columns in 405 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fsgA/nostruct-align/1fsgA.t04-thin90.a2m.gz # 1fsgA.t04-thin90.a2m with 1392 sequences, total weight= 1392 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.978132 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fsgA/info/1fsgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fsgA/nostruct-align/1fsgA.t04-thin90.a2m.gz, have 97511 columns in 406 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1ts9A/nostruct-align/1ts9A.t04-thin90.a2m.gz # 1ts9A.t04-thin90.a2m with 50 sequences, total weight= 33.2241 avg weight= 0.664481 42 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1ts9A/info/1ts9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1ts9A/nostruct-align/1ts9A.t04-thin90.a2m.gz, have 97609 columns in 407 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kshB/nostruct-align/1kshB.t04-thin90.a2m.gz # 1kshB.t04-thin90.a2m with 17 sequences, total weight= 8.08343 avg weight= 0.475496 21 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kshB/info/1kshB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kshB/nostruct-align/1kshB.t04-thin90.a2m.gz, have 97751 columns in 408 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y7yA/nostruct-align/1y7yA.t04-thin90.a2m.gz # 1y7yA.t04-thin90.a2m with 1067 sequences, total weight= 464.557 avg weight= 0.435386 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31647 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y7yA/info/1y7yA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1y7yA/nostruct-align/1y7yA.t04-thin90.a2m.gz, have 97820 columns in 409 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a4iA/nostruct-align/1a4iA.t04-thin90.a2m.gz # 1a4iA.t04-thin90.a2m with 474 sequences, total weight= 337.66 avg weight= 0.712363 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30393 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a4iA/info/1a4iA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1a4iA/nostruct-align/1a4iA.t04-thin90.a2m.gz, have 98105 columns in 410 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jubA/nostruct-align/1jubA.t04-thin90.a2m.gz # 1jubA.t04-thin90.a2m with 2078 sequences, total weight= 2078 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.935164 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jubA/info/1jubA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jubA/nostruct-align/1jubA.t04-thin90.a2m.gz, have 98416 columns in 411 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oflA/nostruct-align/1oflA.t04-thin90.a2m.gz # 1oflA.t04-thin90.a2m with 452 sequences, total weight= 452 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01226 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oflA/info/1oflA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oflA/nostruct-align/1oflA.t04-thin90.a2m.gz, have 98897 columns in 412 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wcv1/nostruct-align/1wcv1.t04-thin90.a2m.gz # 1wcv1.t04-thin90.a2m with 1633 sequences, total weight= 1633 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08918 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wcv1/info/1wcv1.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wcv1/nostruct-align/1wcv1.t04-thin90.a2m.gz, have 99140 columns in 413 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhnA/nostruct-align/1vhnA.t04-thin90.a2m.gz # 1vhnA.t04-thin90.a2m with 1854 sequences, total weight= 1854 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.931411 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhnA/info/1vhnA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vhnA/nostruct-align/1vhnA.t04-thin90.a2m.gz, have 99445 columns in 414 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c5eA/nostruct-align/1c5eA.t04-thin90.a2m.gz # 1c5eA.t04-thin90.a2m with 7 sequences, total weight= 3.87668 avg weight= 0.553811 14 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c5eA/info/1c5eA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1c5eA/nostruct-align/1c5eA.t04-thin90.a2m.gz, have 99540 columns in 415 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rwjA/nostruct-align/1rwjA.t04-thin90.a2m.gz # 1rwjA.t04-thin90.a2m with 44 sequences, total weight= 9.85067 avg weight= 0.223879 33 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rwjA/info/1rwjA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rwjA/nostruct-align/1rwjA.t04-thin90.a2m.gz, have 99621 columns in 416 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p3dA/nostruct-align/1p3dA.t04-thin90.a2m.gz # 1p3dA.t04-thin90.a2m with 913 sequences, total weight= 913 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08338 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p3dA/info/1p3dA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p3dA/nostruct-align/1p3dA.t04-thin90.a2m.gz, have 100084 columns in 417 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x8qA/nostruct-align/1x8qA.t04-thin90.a2m.gz # 1x8qA.t04-thin90.a2m with 68 sequences, total weight= 68 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11409 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x8qA/info/1x8qA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1x8qA/nostruct-align/1x8qA.t04-thin90.a2m.gz, have 100268 columns in 418 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2s/2sak/nostruct-align/2sak.t04-thin90.a2m.gz # 2sak.t04-thin90.a2m with 5 sequences, total weight= 5 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.238 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2s/2sak/info/2sak.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2s/2sak/nostruct-align/2sak.t04-thin90.a2m.gz, have 100389 columns in 419 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d0qA/nostruct-align/1d0qA.t04-thin90.a2m.gz # 1d0qA.t04-thin90.a2m with 151 sequences, total weight= 23.4987 avg weight= 0.15562 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d0qA/info/1d0qA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d0qA/nostruct-align/1d0qA.t04-thin90.a2m.gz, have 100491 columns in 420 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xe7A/nostruct-align/1xe7A.t04-thin90.a2m.gz # 1xe7A.t04-thin90.a2m with 60 sequences, total weight= 25.5594 avg weight= 0.42599 39 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xe7A/info/1xe7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xe7A/nostruct-align/1xe7A.t04-thin90.a2m.gz, have 100677 columns in 421 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1npyA/nostruct-align/1npyA.t04-thin90.a2m.gz # 1npyA.t04-thin90.a2m with 470 sequences, total weight= 470 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16348 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1npyA/info/1npyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1npyA/nostruct-align/1npyA.t04-thin90.a2m.gz, have 100946 columns in 422 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bl8A/nostruct-align/2bl8A.t04-thin90.a2m.gz # 2bl8A.t04-thin90.a2m with 9 sequences, total weight= 4.45568 avg weight= 0.495075 16 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bl8A/info/2bl8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2b/2bl8A/nostruct-align/2bl8A.t04-thin90.a2m.gz, have 101039 columns in 423 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fs7A/nostruct-align/1fs7A.t04-thin90.a2m.gz # 1fs7A.t04-thin90.a2m with 297 sequences, total weight= 297 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.882959 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fs7A/info/1fs7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fs7A/nostruct-align/1fs7A.t04-thin90.a2m.gz, have 101510 columns in 424 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eazA/nostruct-align/1eazA.t04-thin90.a2m.gz # 1eazA.t04-thin90.a2m with 724 sequences, total weight= 724 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.930424 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eazA/info/1eazA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1eazA/nostruct-align/1eazA.t04-thin90.a2m.gz, have 101613 columns in 425 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pg6A/nostruct-align/1pg6A.t04-thin90.a2m.gz # 1pg6A.t04-thin90.a2m with 108 sequences, total weight= 102.068 avg weight= 0.945073 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pg6A/info/1pg6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pg6A/nostruct-align/1pg6A.t04-thin90.a2m.gz, have 101829 columns in 426 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uj8A/nostruct-align/1uj8A.t04-thin90.a2m.gz # 1uj8A.t04-thin90.a2m with 47 sequences, total weight= 7.70932 avg weight= 0.164028 27 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uj8A/info/1uj8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uj8A/nostruct-align/1uj8A.t04-thin90.a2m.gz, have 101902 columns in 427 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1npsA/nostruct-align/1npsA.t04-thin90.a2m.gz # 1npsA.t04-thin90.a2m with 5 sequences, total weight= 3.43886 avg weight= 0.687772 11 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1npsA/info/1npsA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1npsA/nostruct-align/1npsA.t04-thin90.a2m.gz, have 101990 columns in 428 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1ypqA/nostruct-align/1ypqA.t04-thin90.a2m.gz # 1ypqA.t04-thin90.a2m with 1720 sequences, total weight= 1720 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00536 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1ypqA/info/1ypqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1ypqA/nostruct-align/1ypqA.t04-thin90.a2m.gz, have 102121 columns in 429 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1arb/nostruct-align/1arb.t04-thin90.a2m.gz # 1arb.t04-thin90.a2m with 537 sequences, total weight= 537 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1671 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1arb/info/1arb.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1arb/nostruct-align/1arb.t04-thin90.a2m.gz, have 102384 columns in 430 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jyaA/nostruct-align/1jyaA.t04-thin90.a2m.gz # 1jyaA.t04-thin90.a2m with 6 sequences, total weight= 6 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24331 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jyaA/info/1jyaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jyaA/nostruct-align/1jyaA.t04-thin90.a2m.gz, have 102501 columns in 431 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yndA/nostruct-align/1yndA.t04-thin90.a2m.gz # 1yndA.t04-thin90.a2m with 983 sequences, total weight= 76.5852 avg weight= 0.0779096 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30151 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yndA/info/1yndA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1yndA/nostruct-align/1yndA.t04-thin90.a2m.gz, have 102665 columns in 432 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i19A/nostruct-align/1i19A.t04-thin90.a2m.gz # 1i19A.t04-thin90.a2m with 964 sequences, total weight= 964 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.864606 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i19A/info/1i19A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i19A/nostruct-align/1i19A.t04-thin90.a2m.gz, have 103206 columns in 433 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dljA/nostruct-align/1dljA.t04-thin90.a2m.gz # 1dljA.t04-thin90.a2m with 1949 sequences, total weight= 1949 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.956286 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dljA/info/1dljA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dljA/nostruct-align/1dljA.t04-thin90.a2m.gz, have 103608 columns in 434 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1go3E/nostruct-align/1go3E.t04-thin90.a2m.gz # 1go3E.t04-thin90.a2m with 674 sequences, total weight= 674 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18224 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1go3E/info/1go3E.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1go3E/nostruct-align/1go3E.t04-thin90.a2m.gz, have 103785 columns in 435 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fo8A/nostruct-align/1fo8A.t04-thin90.a2m.gz # 1fo8A.t04-thin90.a2m with 1513 sequences, total weight= 1513 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.863225 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fo8A/info/1fo8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fo8A/nostruct-align/1fo8A.t04-thin90.a2m.gz, have 104115 columns in 436 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bdo/nostruct-align/1bdo.t04-thin90.a2m.gz # 1bdo.t04-thin90.a2m with 368 sequences, total weight= 29.6019 avg weight= 0.08044 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bdo/info/1bdo.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1bdo/nostruct-align/1bdo.t04-thin90.a2m.gz, have 104195 columns in 437 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rwhA/nostruct-align/1rwhA.t04-thin90.a2m.gz # 1rwhA.t04-thin90.a2m with 59 sequences, total weight= 59 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13439 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rwhA/info/1rwhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rwhA/nostruct-align/1rwhA.t04-thin90.a2m.gz, have 104949 columns in 438 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j7xA/nostruct-align/1j7xA.t04-thin90.a2m.gz # 1j7xA.t04-thin90.a2m with 405 sequences, total weight= 405 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19148 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j7xA/info/1j7xA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j7xA/nostruct-align/1j7xA.t04-thin90.a2m.gz, have 105251 columns in 439 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ukkA/nostruct-align/1ukkA.t04-thin90.a2m.gz # 1ukkA.t04-thin90.a2m with 274 sequences, total weight= 274 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11967 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ukkA/info/1ukkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ukkA/nostruct-align/1ukkA.t04-thin90.a2m.gz, have 105392 columns in 440 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m15A/nostruct-align/1m15A.t04-thin90.a2m.gz # 1m15A.t04-thin90.a2m with 121 sequences, total weight= 19.142 avg weight= 0.158198 34 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m15A/info/1m15A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m15A/nostruct-align/1m15A.t04-thin90.a2m.gz, have 105748 columns in 441 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bkrA/nostruct-align/1bkrA.t04-thin90.a2m.gz # 1bkrA.t04-thin90.a2m with 305 sequences, total weight= 305 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28614 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bkrA/info/1bkrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1bkrA/nostruct-align/1bkrA.t04-thin90.a2m.gz, have 105856 columns in 442 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qlwA/nostruct-align/1qlwA.t04-thin90.a2m.gz # 1qlwA.t04-thin90.a2m with 2367 sequences, total weight= 2367 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.79703 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qlwA/info/1qlwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qlwA/nostruct-align/1qlwA.t04-thin90.a2m.gz, have 106174 columns in 443 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x8vA/nostruct-align/1x8vA.t04-thin90.a2m.gz # 1x8vA.t04-thin90.a2m with 1949 sequences, total weight= 1949 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23236 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x8vA/info/1x8vA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1x8vA/nostruct-align/1x8vA.t04-thin90.a2m.gz, have 106603 columns in 444 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1elkA/nostruct-align/1elkA.t04-thin90.a2m.gz # 1elkA.t04-thin90.a2m with 112 sequences, total weight= 112 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2804 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1elkA/info/1elkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1elkA/nostruct-align/1elkA.t04-thin90.a2m.gz, have 106756 columns in 445 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f1mA/nostruct-align/1f1mA.t04-thin90.a2m.gz # 1f1mA.t04-thin90.a2m with 119 sequences, total weight= 5.94903 avg weight= 0.0499919 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f1mA/info/1f1mA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f1mA/nostruct-align/1f1mA.t04-thin90.a2m.gz, have 106918 columns in 446 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vkkA/nostruct-align/1vkkA.t04-thin90.a2m.gz # 1vkkA.t04-thin90.a2m with 199 sequences, total weight= 160.158 avg weight= 0.804814 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30124 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vkkA/info/1vkkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vkkA/nostruct-align/1vkkA.t04-thin90.a2m.gz, have 107055 columns in 447 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r2qA/nostruct-align/1r2qA.t04-thin90.a2m.gz # 1r2qA.t04-thin90.a2m with 1441 sequences, total weight= 1441 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27411 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r2qA/info/1r2qA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r2qA/nostruct-align/1r2qA.t04-thin90.a2m.gz, have 107225 columns in 448 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1edg/nostruct-align/1edg.t04-thin90.a2m.gz # 1edg.t04-thin90.a2m with 1367 sequences, total weight= 1367 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.836528 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1edg/info/1edg.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1edg/nostruct-align/1edg.t04-thin90.a2m.gz, have 107605 columns in 449 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cnzA/nostruct-align/1cnzA.t04-thin90.a2m.gz # 1cnzA.t04-thin90.a2m with 506 sequences, total weight= 46.2166 avg weight= 0.0913372 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cnzA/info/1cnzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1cnzA/nostruct-align/1cnzA.t04-thin90.a2m.gz, have 107968 columns in 450 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w96A/nostruct-align/1w96A.t04-thin90.a2m.gz # 1w96A.t04-thin90.a2m with 2166 sequences, total weight= 2166 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09353 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w96A/info/1w96A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w96A/nostruct-align/1w96A.t04-thin90.a2m.gz, have 108517 columns in 451 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k4nA/nostruct-align/1k4nA.t04-thin90.a2m.gz # 1k4nA.t04-thin90.a2m with 19 sequences, total weight= 8.36616 avg weight= 0.440324 25 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k4nA/info/1k4nA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k4nA/nostruct-align/1k4nA.t04-thin90.a2m.gz, have 108700 columns in 452 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gxrA/nostruct-align/1gxrA.t04-thin90.a2m.gz # 1gxrA.t04-thin90.a2m with 2061 sequences, total weight= 2061 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.925827 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gxrA/info/1gxrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gxrA/nostruct-align/1gxrA.t04-thin90.a2m.gz, have 109035 columns in 453 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qv9A/nostruct-align/1qv9A.t04-thin90.a2m.gz # 1qv9A.t04-thin90.a2m with 9 sequences, total weight= 3.45398 avg weight= 0.383775 13 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qv9A/info/1qv9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qv9A/nostruct-align/1qv9A.t04-thin90.a2m.gz, have 109317 columns in 454 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rwiA/nostruct-align/1rwiA.t04-thin90.a2m.gz # 1rwiA.t04-thin90.a2m with 2392 sequences, total weight= 2392 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.894719 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rwiA/info/1rwiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rwiA/nostruct-align/1rwiA.t04-thin90.a2m.gz, have 109573 columns in 455 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2d/2dpmA/nostruct-align/2dpmA.t04-thin90.a2m.gz # 2dpmA.t04-thin90.a2m with 167 sequences, total weight= 167 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13384 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2d/2dpmA/info/2dpmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2d/2dpmA/nostruct-align/2dpmA.t04-thin90.a2m.gz, have 109831 columns in 456 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u14A/nostruct-align/1u14A.t04-thin90.a2m.gz # 1u14A.t04-thin90.a2m with 30 sequences, total weight= 13.005 avg weight= 0.4335 32 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u14A/info/1u14A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1u14A/nostruct-align/1u14A.t04-thin90.a2m.gz, have 110000 columns in 457 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54H/nostruct-align/1v54H.t04-thin90.a2m.gz # 1v54H.t04-thin90.a2m with 27 sequences, total weight= 6.61315 avg weight= 0.244931 25 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54H/info/1v54H.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v54H/nostruct-align/1v54H.t04-thin90.a2m.gz, have 110079 columns in 458 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bx4A/nostruct-align/1bx4A.t04-thin90.a2m.gz # 1bx4A.t04-thin90.a2m with 1195 sequences, total weight= 1195 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.997253 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bx4A/info/1bx4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1bx4A/nostruct-align/1bx4A.t04-thin90.a2m.gz, have 110421 columns in 459 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e42A/nostruct-align/1e42A.t04-thin90.a2m.gz # 1e42A.t04-thin90.a2m with 14 sequences, total weight= 7.37033 avg weight= 0.526452 18 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e42A/info/1e42A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e42A/nostruct-align/1e42A.t04-thin90.a2m.gz, have 110654 columns in 460 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t56A/nostruct-align/1t56A.t04-thin90.a2m.gz # 1t56A.t04-thin90.a2m with 2409 sequences, total weight= 2409 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.790721 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t56A/info/1t56A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t56A/nostruct-align/1t56A.t04-thin90.a2m.gz, have 110847 columns in 461 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tmxA/nostruct-align/1tmxA.t04-thin90.a2m.gz # 1tmxA.t04-thin90.a2m with 246 sequences, total weight= 114.824 avg weight= 0.466765 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30089 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tmxA/info/1tmxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tmxA/nostruct-align/1tmxA.t04-thin90.a2m.gz, have 111139 columns in 462 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lmiA/nostruct-align/1lmiA.t04-thin90.a2m.gz # 1lmiA.t04-thin90.a2m with 3 sequences, total weight= 3 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1765 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lmiA/info/1lmiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lmiA/nostruct-align/1lmiA.t04-thin90.a2m.gz, have 111270 columns in 463 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gp0A/nostruct-align/1gp0A.t04-thin90.a2m.gz # 1gp0A.t04-thin90.a2m with 217 sequences, total weight= 88.6174 avg weight= 0.408375 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30218 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gp0A/info/1gp0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gp0A/nostruct-align/1gp0A.t04-thin90.a2m.gz, have 111403 columns in 464 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1opd/nostruct-align/1opd.t04-thin90.a2m.gz # 1opd.t04-thin90.a2m with 180 sequences, total weight= 22.5311 avg weight= 0.125173 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1opd/info/1opd.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1opd/nostruct-align/1opd.t04-thin90.a2m.gz, have 111488 columns in 465 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vl7A/nostruct-align/1vl7A.t04-thin90.a2m.gz # 1vl7A.t04-thin90.a2m with 246 sequences, total weight= 246 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0323 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vl7A/info/1vl7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vl7A/nostruct-align/1vl7A.t04-thin90.a2m.gz, have 111623 columns in 466 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mqoA/nostruct-align/1mqoA.t04-thin90.a2m.gz # 1mqoA.t04-thin90.a2m with 2103 sequences, total weight= 2103 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.814018 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mqoA/info/1mqoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mqoA/nostruct-align/1mqoA.t04-thin90.a2m.gz, have 111844 columns in 467 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a73A/nostruct-align/1a73A.t04-thin90.a2m.gz # 1a73A.t04-thin90.a2m with 12 sequences, total weight= 12 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21013 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a73A/info/1a73A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1a73A/nostruct-align/1a73A.t04-thin90.a2m.gz, have 112006 columns in 468 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1no5A/nostruct-align/1no5A.t04-thin90.a2m.gz # 1no5A.t04-thin90.a2m with 285 sequences, total weight= 285 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01781 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1no5A/info/1no5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1no5A/nostruct-align/1no5A.t04-thin90.a2m.gz, have 112106 columns in 469 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fltX/nostruct-align/1fltX.t04-thin90.a2m.gz # 1fltX.t04-thin90.a2m with 24 sequences, total weight= 13.4311 avg weight= 0.559628 28 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fltX/info/1fltX.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fltX/nostruct-align/1fltX.t04-thin90.a2m.gz, have 112201 columns in 470 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lf7A/nostruct-align/1lf7A.t04-thin90.a2m.gz # 1lf7A.t04-thin90.a2m with 301 sequences, total weight= 301 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.917974 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lf7A/info/1lf7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lf7A/nostruct-align/1lf7A.t04-thin90.a2m.gz, have 112365 columns in 471 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ew0A/nostruct-align/1ew0A.t04-thin90.a2m.gz # 1ew0A.t04-thin90.a2m with 4026 sequences, total weight= 4026 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.83584 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ew0A/info/1ew0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1ew0A/nostruct-align/1ew0A.t04-thin90.a2m.gz, have 112495 columns in 472 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nxuA/nostruct-align/1nxuA.t04-thin90.a2m.gz # 1nxuA.t04-thin90.a2m with 88 sequences, total weight= 28.4289 avg weight= 0.323056 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nxuA/info/1nxuA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nxuA/nostruct-align/1nxuA.t04-thin90.a2m.gz, have 112827 columns in 473 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f9yA/nostruct-align/1f9yA.t04-thin90.a2m.gz # 1f9yA.t04-thin90.a2m with 176 sequences, total weight= 30.8796 avg weight= 0.175452 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f9yA/info/1f9yA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f9yA/nostruct-align/1f9yA.t04-thin90.a2m.gz, have 112985 columns in 474 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3e/3ezmA/nostruct-align/3ezmA.t04-thin90.a2m.gz # 3ezmA.t04-thin90.a2m with 4 sequences, total weight= 3.93864 avg weight= 0.98466 8 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3e/3ezmA/info/3ezmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/3e/3ezmA/nostruct-align/3ezmA.t04-thin90.a2m.gz, have 113086 columns in 475 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vmhA/nostruct-align/1vmhA.t04-thin90.a2m.gz # 1vmhA.t04-thin90.a2m with 129 sequences, total weight= 14.9268 avg weight= 0.115712 40 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vmhA/info/1vmhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vmhA/nostruct-align/1vmhA.t04-thin90.a2m.gz, have 113215 columns in 476 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h05A/nostruct-align/1h05A.t04-thin90.a2m.gz # 1h05A.t04-thin90.a2m with 129 sequences, total weight= 9.1529 avg weight= 0.0709527 33 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h05A/info/1h05A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h05A/nostruct-align/1h05A.t04-thin90.a2m.gz, have 113353 columns in 477 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s7iA/nostruct-align/1s7iA.t04-thin90.a2m.gz # 1s7iA.t04-thin90.a2m with 69 sequences, total weight= 34.3676 avg weight= 0.498081 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s7iA/info/1s7iA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1s7iA/nostruct-align/1s7iA.t04-thin90.a2m.gz, have 113477 columns in 478 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p9hA/nostruct-align/1p9hA.t04-thin90.a2m.gz # 1p9hA.t04-thin90.a2m with 354 sequences, total weight= 253.378 avg weight= 0.715756 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30074 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p9hA/info/1p9hA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p9hA/nostruct-align/1p9hA.t04-thin90.a2m.gz, have 113656 columns in 479 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mwqA/nostruct-align/1mwqA.t04-thin90.a2m.gz # 1mwqA.t04-thin90.a2m with 112 sequences, total weight= 65.829 avg weight= 0.587759 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mwqA/info/1mwqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mwqA/nostruct-align/1mwqA.t04-thin90.a2m.gz, have 113756 columns in 480 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ifrA/nostruct-align/1ifrA.t04-thin90.a2m.gz # 1ifrA.t04-thin90.a2m with 77 sequences, total weight= 29.4555 avg weight= 0.382538 43 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ifrA/info/1ifrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1ifrA/nostruct-align/1ifrA.t04-thin90.a2m.gz, have 113869 columns in 481 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ej0A/nostruct-align/1ej0A.t04-thin90.a2m.gz # 1ej0A.t04-thin90.a2m with 1002 sequences, total weight= 1002 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.986687 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ej0A/info/1ej0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1ej0A/nostruct-align/1ej0A.t04-thin90.a2m.gz, have 114049 columns in 482 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kq6A/nostruct-align/1kq6A.t04-thin90.a2m.gz # 1kq6A.t04-thin90.a2m with 164 sequences, total weight= 164 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08916 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kq6A/info/1kq6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kq6A/nostruct-align/1kq6A.t04-thin90.a2m.gz, have 114189 columns in 483 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3s/3sdhA/nostruct-align/3sdhA.t04-thin90.a2m.gz # 3sdhA.t04-thin90.a2m with 747 sequences, total weight= 747 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19507 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3s/3sdhA/info/3sdhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/3s/3sdhA/nostruct-align/3sdhA.t04-thin90.a2m.gz, have 114334 columns in 484 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1snyA/nostruct-align/1snyA.t04-thin90.a2m.gz # 1snyA.t04-thin90.a2m with 2324 sequences, total weight= 163.798 avg weight= 0.0704813 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32677 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1snyA/info/1snyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1snyA/nostruct-align/1snyA.t04-thin90.a2m.gz, have 114582 columns in 485 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x6oA/nostruct-align/1x6oA.t04-thin90.a2m.gz # 1x6oA.t04-thin90.a2m with 76 sequences, total weight= 15.5827 avg weight= 0.205035 32 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x6oA/info/1x6oA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1x6oA/nostruct-align/1x6oA.t04-thin90.a2m.gz, have 114725 columns in 486 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jpzA/nostruct-align/1jpzA.t04-thin90.a2m.gz # 1jpzA.t04-thin90.a2m with 1814 sequences, total weight= 1814 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14726 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jpzA/info/1jpzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jpzA/nostruct-align/1jpzA.t04-thin90.a2m.gz, have 115181 columns in 487 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2t/2tnfA/nostruct-align/2tnfA.t04-thin90.a2m.gz # 2tnfA.t04-thin90.a2m with 85 sequences, total weight= 36.5238 avg weight= 0.429692 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2t/2tnfA/info/2tnfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2t/2tnfA/nostruct-align/2tnfA.t04-thin90.a2m.gz, have 115329 columns in 488 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uwfA/nostruct-align/1uwfA.t04-thin90.a2m.gz # 1uwfA.t04-thin90.a2m with 7 sequences, total weight= 4.32731 avg weight= 0.618188 14 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uwfA/info/1uwfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uwfA/nostruct-align/1uwfA.t04-thin90.a2m.gz, have 115487 columns in 489 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d4xG/nostruct-align/1d4xG.t04-thin90.a2m.gz # 1d4xG.t04-thin90.a2m with 301 sequences, total weight= 301 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08446 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d4xG/info/1d4xG.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d4xG/nostruct-align/1d4xG.t04-thin90.a2m.gz, have 115611 columns in 490 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f86A/nostruct-align/1f86A.t04-thin90.a2m.gz # 1f86A.t04-thin90.a2m with 67 sequences, total weight= 11.9831 avg weight= 0.178852 34 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f86A/info/1f86A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f86A/nostruct-align/1f86A.t04-thin90.a2m.gz, have 115726 columns in 491 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1orrA/nostruct-align/1orrA.t04-thin90.a2m.gz # 1orrA.t04-thin90.a2m with 2117 sequences, total weight= 2117 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07692 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1orrA/info/1orrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1orrA/nostruct-align/1orrA.t04-thin90.a2m.gz, have 116064 columns in 492 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m4iA/nostruct-align/1m4iA.t04-thin90.a2m.gz # 1m4iA.t04-thin90.a2m with 2432 sequences, total weight= 2432 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.836973 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m4iA/info/1m4iA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m4iA/nostruct-align/1m4iA.t04-thin90.a2m.gz, have 116245 columns in 493 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rtqA/nostruct-align/1rtqA.t04-thin90.a2m.gz # 1rtqA.t04-thin90.a2m with 1356 sequences, total weight= 1356 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.863837 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rtqA/info/1rtqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rtqA/nostruct-align/1rtqA.t04-thin90.a2m.gz, have 116536 columns in 494 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g6sA/nostruct-align/1g6sA.t04-thin90.a2m.gz # 1g6sA.t04-thin90.a2m with 397 sequences, total weight= 80.2686 avg weight= 0.202188 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30169 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g6sA/info/1g6sA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g6sA/nostruct-align/1g6sA.t04-thin90.a2m.gz, have 116963 columns in 495 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r2mA/nostruct-align/1r2mA.t04-thin90.a2m.gz # 1r2mA.t04-thin90.a2m with 19 sequences, total weight= 4.1189 avg weight= 0.216784 23 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r2mA/info/1r2mA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r2mA/nostruct-align/1r2mA.t04-thin90.a2m.gz, have 117033 columns in 496 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nqzA/nostruct-align/1nqzA.t04-thin90.a2m.gz # 1nqzA.t04-thin90.a2m with 1559 sequences, total weight= 1559 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.791813 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nqzA/info/1nqzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nqzA/nostruct-align/1nqzA.t04-thin90.a2m.gz, have 117204 columns in 497 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2e/2eng/nostruct-align/2eng.t04-thin90.a2m.gz # 2eng.t04-thin90.a2m with 22 sequences, total weight= 5.24969 avg weight= 0.238622 22 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2e/2eng/info/2eng.stride-mixed.near-backbone-11 WARNING: skipping f, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/2e/2eng/nostruct-align/2eng.t04-thin90.a2m.gz, have 117409 columns in 498 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kafA/nostruct-align/1kafA.t04-thin90.a2m.gz # 1kafA.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.964603 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kafA/info/1kafA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kafA/nostruct-align/1kafA.t04-thin90.a2m.gz, have 117517 columns in 499 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1ku3A/nostruct-align/1ku3A.t04-thin90.a2m.gz # 1ku3A.t04-thin90.a2m with 200 sequences, total weight= 11.802 avg weight= 0.0590102 39 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1ku3A/info/1ku3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1ku3A/nostruct-align/1ku3A.t04-thin90.a2m.gz, have 117578 columns in 500 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rkqA/nostruct-align/1rkqA.t04-thin90.a2m.gz # 1rkqA.t04-thin90.a2m with 2044 sequences, total weight= 2044 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.968655 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rkqA/info/1rkqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rkqA/nostruct-align/1rkqA.t04-thin90.a2m.gz, have 117849 columns in 501 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qg8A/nostruct-align/1qg8A.t04-thin90.a2m.gz # 1qg8A.t04-thin90.a2m with 2343 sequences, total weight= 2343 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.877543 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qg8A/info/1qg8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qg8A/nostruct-align/1qg8A.t04-thin90.a2m.gz, have 118087 columns in 502 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lm5A/nostruct-align/1lm5A.t04-thin90.a2m.gz # 1lm5A.t04-thin90.a2m with 93 sequences, total weight= 93 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16546 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lm5A/info/1lm5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lm5A/nostruct-align/1lm5A.t04-thin90.a2m.gz, have 118276 columns in 503 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2c/2cuaA/nostruct-align/2cuaA.t04-thin90.a2m.gz # 2cuaA.t04-thin90.a2m with 368 sequences, total weight= 5.07572 avg weight= 0.0137927 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2c/2cuaA/info/2cuaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2c/2cuaA/nostruct-align/2cuaA.t04-thin90.a2m.gz, have 118398 columns in 504 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mla/nostruct-align/1mla.t04-thin90.a2m.gz # 1mla.t04-thin90.a2m with 1033 sequences, total weight= 1033 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24846 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mla/info/1mla.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mla/nostruct-align/1mla.t04-thin90.a2m.gz, have 118703 columns in 505 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f9vA/nostruct-align/1f9vA.t04-thin90.a2m.gz # 1f9vA.t04-thin90.a2m with 494 sequences, total weight= 50.5816 avg weight= 0.102392 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30122 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f9vA/info/1f9vA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f9vA/nostruct-align/1f9vA.t04-thin90.a2m.gz, have 119016 columns in 506 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s2oA/nostruct-align/1s2oA.t04-thin90.a2m.gz # 1s2oA.t04-thin90.a2m with 2154 sequences, total weight= 2154 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.920382 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s2oA/info/1s2oA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1s2oA/nostruct-align/1s2oA.t04-thin90.a2m.gz, have 119260 columns in 507 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k92A/nostruct-align/1k92A.t04-thin90.a2m.gz # 1k92A.t04-thin90.a2m with 1104 sequences, total weight= 1104 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1029 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k92A/info/1k92A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k92A/nostruct-align/1k92A.t04-thin90.a2m.gz, have 119704 columns in 508 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i4jA/nostruct-align/1i4jA.t04-thin90.a2m.gz # 1i4jA.t04-thin90.a2m with 237 sequences, total weight= 37.9604 avg weight= 0.16017 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i4jA/info/1i4jA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i4jA/nostruct-align/1i4jA.t04-thin90.a2m.gz, have 119814 columns in 509 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q3oA/nostruct-align/1q3oA.t04-thin90.a2m.gz # 1q3oA.t04-thin90.a2m with 744 sequences, total weight= 744 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13657 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q3oA/info/1q3oA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q3oA/nostruct-align/1q3oA.t04-thin90.a2m.gz, have 119918 columns in 510 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1euvA/nostruct-align/1euvA.t04-thin90.a2m.gz # 1euvA.t04-thin90.a2m with 348 sequences, total weight= 348 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.911685 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1euvA/info/1euvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1euvA/nostruct-align/1euvA.t04-thin90.a2m.gz, have 120139 columns in 511 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d3gA/nostruct-align/1d3gA.t04-thin90.a2m.gz # 1d3gA.t04-thin90.a2m with 1859 sequences, total weight= 1859 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.947624 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d3gA/info/1d3gA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d3gA/nostruct-align/1d3gA.t04-thin90.a2m.gz, have 120499 columns in 512 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uufA/nostruct-align/1uufA.t04-thin90.a2m.gz # 1uufA.t04-thin90.a2m with 1945 sequences, total weight= 1945 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27767 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uufA/info/1uufA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uufA/nostruct-align/1uufA.t04-thin90.a2m.gz, have 120838 columns in 513 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wmaA/nostruct-align/1wmaA.t04-thin90.a2m.gz # 1wmaA.t04-thin90.a2m with 2223 sequences, total weight= 177.847 avg weight= 0.0800033 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31296 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wmaA/info/1wmaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wmaA/nostruct-align/1wmaA.t04-thin90.a2m.gz, have 121113 columns in 514 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qveA/nostruct-align/1qveA.t04-thin90.a2m.gz # 1qveA.t04-thin90.a2m with 158 sequences, total weight= 34.2322 avg weight= 0.216659 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qveA/info/1qveA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qveA/nostruct-align/1qveA.t04-thin90.a2m.gz, have 121239 columns in 515 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qazA/nostruct-align/1qazA.t04-thin90.a2m.gz # 1qazA.t04-thin90.a2m with 31 sequences, total weight= 31 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11446 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qazA/info/1qazA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qazA/nostruct-align/1qazA.t04-thin90.a2m.gz, have 121590 columns in 516 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cczA/nostruct-align/1cczA.t04-thin90.a2m.gz # 1cczA.t04-thin90.a2m with 2888 sequences, total weight= 2888 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.98223 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cczA/info/1cczA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1cczA/nostruct-align/1cczA.t04-thin90.a2m.gz, have 121761 columns in 517 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p0zA/nostruct-align/1p0zA.t04-thin90.a2m.gz # 1p0zA.t04-thin90.a2m with 45 sequences, total weight= 20.7102 avg weight= 0.460226 36 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p0zA/info/1p0zA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p0zA/nostruct-align/1p0zA.t04-thin90.a2m.gz, have 121892 columns in 518 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n9eA/nostruct-align/1n9eA.t04-thin90.a2m.gz # 1n9eA.t04-thin90.a2m with 102 sequences, total weight= 70.5683 avg weight= 0.691846 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n9eA/info/1n9eA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n9eA/nostruct-align/1n9eA.t04-thin90.a2m.gz, have 122627 columns in 519 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l8bA/nostruct-align/1l8bA.t04-thin90.a2m.gz # 1l8bA.t04-thin90.a2m with 86 sequences, total weight= 43.6085 avg weight= 0.507076 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l8bA/info/1l8bA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1l8bA/nostruct-align/1l8bA.t04-thin90.a2m.gz, have 122804 columns in 520 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vkeA/nostruct-align/1vkeA.t04-thin90.a2m.gz # 1vkeA.t04-thin90.a2m with 311 sequences, total weight= 311 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26489 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vkeA/info/1vkeA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vkeA/nostruct-align/1vkeA.t04-thin90.a2m.gz, have 122921 columns in 521 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b8oA/nostruct-align/1b8oA.t04-thin90.a2m.gz # 1b8oA.t04-thin90.a2m with 481 sequences, total weight= 481 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05802 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b8oA/info/1b8oA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1b8oA/nostruct-align/1b8oA.t04-thin90.a2m.gz, have 123201 columns in 522 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vcaA/nostruct-align/1vcaA.t04-thin90.a2m.gz # 1vcaA.t04-thin90.a2m with 2840 sequences, total weight= 2840 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.941028 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vcaA/info/1vcaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vcaA/nostruct-align/1vcaA.t04-thin90.a2m.gz, have 123400 columns in 523 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qq9A/nostruct-align/1qq9A.t04-thin90.a2m.gz # 1qq9A.t04-thin90.a2m with 1325 sequences, total weight= 1325 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.89832 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qq9A/info/1qq9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qq9A/nostruct-align/1qq9A.t04-thin90.a2m.gz, have 123677 columns in 524 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xkrA/nostruct-align/1xkrA.t04-thin90.a2m.gz # 1xkrA.t04-thin90.a2m with 110 sequences, total weight= 110 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14623 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xkrA/info/1xkrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xkrA/nostruct-align/1xkrA.t04-thin90.a2m.gz, have 123882 columns in 525 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uasA/nostruct-align/1uasA.t04-thin90.a2m.gz # 1uasA.t04-thin90.a2m with 259 sequences, total weight= 259 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0151 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uasA/info/1uasA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uasA/nostruct-align/1uasA.t04-thin90.a2m.gz, have 124244 columns in 526 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y9lA/nostruct-align/1y9lA.t04-thin90.a2m.gz # 1y9lA.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.616166 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y9lA/info/1y9lA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1y9lA/nostruct-align/1y9lA.t04-thin90.a2m.gz, have 124354 columns in 527 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hyvA/nostruct-align/1hyvA.t04-thin90.a2m.gz # 1hyvA.t04-thin90.a2m with 596 sequences, total weight= 596 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28293 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hyvA/info/1hyvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hyvA/nostruct-align/1hyvA.t04-thin90.a2m.gz, have 124498 columns in 528 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uxy/nostruct-align/1uxy.t04-thin90.a2m.gz # 1uxy.t04-thin90.a2m with 953 sequences, total weight= 953 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.998088 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uxy/info/1uxy.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uxy/nostruct-align/1uxy.t04-thin90.a2m.gz, have 124838 columns in 529 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1avwB/nostruct-align/1avwB.t04-thin90.a2m.gz # 1avwB.t04-thin90.a2m with 104 sequences, total weight= 42.7012 avg weight= 0.410588 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1avwB/info/1avwB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1avwB/nostruct-align/1avwB.t04-thin90.a2m.gz, have 125009 columns in 530 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xszA/nostruct-align/1xszA.t04-thin90.a2m.gz # 1xszA.t04-thin90.a2m with 188 sequences, total weight= 188 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16296 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xszA/info/1xszA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xszA/nostruct-align/1xszA.t04-thin90.a2m.gz, have 125365 columns in 531 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e43A/nostruct-align/1e43A.t04-thin90.a2m.gz # 1e43A.t04-thin90.a2m with 1335 sequences, total weight= 1335 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.979775 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e43A/info/1e43A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e43A/nostruct-align/1e43A.t04-thin90.a2m.gz, have 125848 columns in 532 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fxoA/nostruct-align/1fxoA.t04-thin90.a2m.gz # 1fxoA.t04-thin90.a2m with 1623 sequences, total weight= 1623 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00798 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fxoA/info/1fxoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fxoA/nostruct-align/1fxoA.t04-thin90.a2m.gz, have 126140 columns in 533 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q52A/nostruct-align/1q52A.t04-thin90.a2m.gz # 1q52A.t04-thin90.a2m with 1425 sequences, total weight= 1425 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1089 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q52A/info/1q52A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q52A/nostruct-align/1q52A.t04-thin90.a2m.gz, have 126409 columns in 534 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mnaA/nostruct-align/1mnaA.t04-thin90.a2m.gz # 1mnaA.t04-thin90.a2m with 2380 sequences, total weight= 2380 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.885447 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mnaA/info/1mnaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mnaA/nostruct-align/1mnaA.t04-thin90.a2m.gz, have 126685 columns in 535 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mugA/nostruct-align/1mugA.t04-thin90.a2m.gz # 1mugA.t04-thin90.a2m with 183 sequences, total weight= 183 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.251 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mugA/info/1mugA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mugA/nostruct-align/1mugA.t04-thin90.a2m.gz, have 126850 columns in 536 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1suuA/nostruct-align/1suuA.t04-thin90.a2m.gz # 1suuA.t04-thin90.a2m with 258 sequences, total weight= 88.8651 avg weight= 0.344438 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30163 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1suuA/info/1suuA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1suuA/nostruct-align/1suuA.t04-thin90.a2m.gz, have 127143 columns in 537 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nf9A/nostruct-align/1nf9A.t04-thin90.a2m.gz # 1nf9A.t04-thin90.a2m with 486 sequences, total weight= 486 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0841 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nf9A/info/1nf9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nf9A/nostruct-align/1nf9A.t04-thin90.a2m.gz, have 127350 columns in 538 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bgf/nostruct-align/1bgf.t04-thin90.a2m.gz # 1bgf.t04-thin90.a2m with 32 sequences, total weight= 12.7708 avg weight= 0.399086 28 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bgf/info/1bgf.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1bgf/nostruct-align/1bgf.t04-thin90.a2m.gz, have 127474 columns in 539 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ugiA/nostruct-align/1ugiA.t04-thin90.a2m.gz # 1ugiA.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.584933 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ugiA/info/1ugiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ugiA/nostruct-align/1ugiA.t04-thin90.a2m.gz, have 127557 columns in 540 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y0uA/nostruct-align/1y0uA.t04-thin90.a2m.gz # 1y0uA.t04-thin90.a2m with 3 sequences, total weight= 3 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2033 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y0uA/info/1y0uA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1y0uA/nostruct-align/1y0uA.t04-thin90.a2m.gz, have 127646 columns in 541 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y66A/nostruct-align/1y66A.t04-thin90.a2m.gz # 1y66A.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.514604 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y66A/info/1y66A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1y66A/nostruct-align/1y66A.t04-thin90.a2m.gz, have 127696 columns in 542 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wdpA/nostruct-align/1wdpA.t04-thin90.a2m.gz # 1wdpA.t04-thin90.a2m with 54 sequences, total weight= 14.3172 avg weight= 0.265133 31 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wdpA/info/1wdpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wdpA/nostruct-align/1wdpA.t04-thin90.a2m.gz, have 128189 columns in 543 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bkaA/nostruct-align/2bkaA.t04-thin90.a2m.gz # 2bkaA.t04-thin90.a2m with 2098 sequences, total weight= 2098 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15456 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bkaA/info/2bkaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2b/2bkaA/nostruct-align/2bkaA.t04-thin90.a2m.gz, have 128420 columns in 544 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bjqA/nostruct-align/2bjqA.t04-thin90.a2m.gz # 2bjqA.t04-thin90.a2m with 12 sequences, total weight= 4.62229 avg weight= 0.385191 17 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bjqA/info/2bjqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2b/2bjqA/nostruct-align/2bjqA.t04-thin90.a2m.gz, have 128760 columns in 545 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sw5A/nostruct-align/1sw5A.t04-thin90.a2m.gz # 1sw5A.t04-thin90.a2m with 259 sequences, total weight= 259 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21987 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sw5A/info/1sw5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sw5A/nostruct-align/1sw5A.t04-thin90.a2m.gz, have 129030 columns in 546 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mqkL/nostruct-align/1mqkL.t04-thin90.a2m.gz # 1mqkL.t04-thin90.a2m with 1160 sequences, total weight= 8.59054 avg weight= 0.00740564 32 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mqkL/info/1mqkL.stride-mixed.near-backbone-11 WARNING: skipping d, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1m/1mqkL/nostruct-align/1mqkL.t04-thin90.a2m.gz, have 129138 columns in 547 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vk1A/nostruct-align/1vk1A.t04-thin90.a2m.gz # 1vk1A.t04-thin90.a2m with 412 sequences, total weight= 412 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1321 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vk1A/info/1vk1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vk1A/nostruct-align/1vk1A.t04-thin90.a2m.gz, have 129370 columns in 548 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xk7A/nostruct-align/1xk7A.t04-thin90.a2m.gz # 1xk7A.t04-thin90.a2m with 617 sequences, total weight= 133.985 avg weight= 0.217155 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30642 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xk7A/info/1xk7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xk7A/nostruct-align/1xk7A.t04-thin90.a2m.gz, have 129777 columns in 549 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2t/2trxA/nostruct-align/2trxA.t04-thin90.a2m.gz # 2trxA.t04-thin90.a2m with 2018 sequences, total weight= 2018 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.966911 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2t/2trxA/info/2trxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2t/2trxA/nostruct-align/2trxA.t04-thin90.a2m.gz, have 129885 columns in 550 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bjfA/nostruct-align/2bjfA.t04-thin90.a2m.gz # 2bjfA.t04-thin90.a2m with 103 sequences, total weight= 103 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24567 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bjfA/info/2bjfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2b/2bjfA/nostruct-align/2bjfA.t04-thin90.a2m.gz, have 130213 columns in 551 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sqgA/nostruct-align/1sqgA.t04-thin90.a2m.gz # 1sqgA.t04-thin90.a2m with 2325 sequences, total weight= 2325 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.85002 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sqgA/info/1sqgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sqgA/nostruct-align/1sqgA.t04-thin90.a2m.gz, have 130637 columns in 552 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tvgA/nostruct-align/1tvgA.t04-thin90.a2m.gz # 1tvgA.t04-thin90.a2m with 7 sequences, total weight= 4.49365 avg weight= 0.64195 13 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tvgA/info/1tvgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tvgA/nostruct-align/1tvgA.t04-thin90.a2m.gz, have 130773 columns in 553 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h4xA/nostruct-align/1h4xA.t04-thin90.a2m.gz # 1h4xA.t04-thin90.a2m with 315 sequences, total weight= 315 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.096 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h4xA/info/1h4xA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h4xA/nostruct-align/1h4xA.t04-thin90.a2m.gz, have 130884 columns in 554 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v4pA/nostruct-align/1v4pA.t04-thin90.a2m.gz # 1v4pA.t04-thin90.a2m with 533 sequences, total weight= 194.745 avg weight= 0.365376 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30893 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v4pA/info/1v4pA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v4pA/nostruct-align/1v4pA.t04-thin90.a2m.gz, have 131035 columns in 555 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vclA/nostruct-align/1vclA.t04-thin90.a2m.gz # 1vclA.t04-thin90.a2m with 252 sequences, total weight= 25.1359 avg weight= 0.0997458 23 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vclA/info/1vclA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vclA/nostruct-align/1vclA.t04-thin90.a2m.gz, have 131467 columns in 556 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w1hA/nostruct-align/1w1hA.t04-thin90.a2m.gz # 1w1hA.t04-thin90.a2m with 45 sequences, total weight= 45 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17888 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w1hA/info/1w1hA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w1hA/nostruct-align/1w1hA.t04-thin90.a2m.gz, have 131614 columns in 557 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ihjA/nostruct-align/1ihjA.t04-thin90.a2m.gz # 1ihjA.t04-thin90.a2m with 932 sequences, total weight= 932 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23353 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ihjA/info/1ihjA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1ihjA/nostruct-align/1ihjA.t04-thin90.a2m.gz, have 131708 columns in 558 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r62A/nostruct-align/1r62A.t04-thin90.a2m.gz # 1r62A.t04-thin90.a2m with 2425 sequences, total weight= 386.759 avg weight= 0.159488 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.34291 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r62A/info/1r62A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r62A/nostruct-align/1r62A.t04-thin90.a2m.gz, have 131844 columns in 559 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y0bA/nostruct-align/1y0bA.t04-thin90.a2m.gz # 1y0bA.t04-thin90.a2m with 1684 sequences, total weight= 1684 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0075 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y0bA/info/1y0bA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1y0bA/nostruct-align/1y0bA.t04-thin90.a2m.gz, have 132037 columns in 560 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nofA/nostruct-align/1nofA.t04-thin90.a2m.gz # 1nofA.t04-thin90.a2m with 167 sequences, total weight= 167 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.923465 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nofA/info/1nofA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nofA/nostruct-align/1nofA.t04-thin90.a2m.gz, have 132420 columns in 561 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1ykiA/nostruct-align/1ykiA.t04-thin90.a2m.gz # 1ykiA.t04-thin90.a2m with 719 sequences, total weight= 719 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.972972 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1ykiA/info/1ykiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1ykiA/nostruct-align/1ykiA.t04-thin90.a2m.gz, have 132636 columns in 562 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g3p/nostruct-align/1g3p.t04-thin90.a2m.gz # 1g3p.t04-thin90.a2m with 676 sequences, total weight= 38.8314 avg weight= 0.0574429 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g3p/info/1g3p.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g3p/nostruct-align/1g3p.t04-thin90.a2m.gz, have 132828 columns in 563 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vdwA/nostruct-align/1vdwA.t04-thin90.a2m.gz # 1vdwA.t04-thin90.a2m with 596 sequences, total weight= 596 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17717 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vdwA/info/1vdwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vdwA/nostruct-align/1vdwA.t04-thin90.a2m.gz, have 133076 columns in 564 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h2cA/nostruct-align/1h2cA.t04-thin90.a2m.gz # 1h2cA.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00753 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h2cA/info/1h2cA.stride-mixed.near-backbone-11 WARNING: skipping b, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1h/1h2cA/nostruct-align/1h2cA.t04-thin90.a2m.gz, have 133200 columns in 565 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhuA/nostruct-align/1vhuA.t04-thin90.a2m.gz # 1vhuA.t04-thin90.a2m with 184 sequences, total weight= 184 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23014 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhuA/info/1vhuA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vhuA/nostruct-align/1vhuA.t04-thin90.a2m.gz, have 133392 columns in 566 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1ju2A/nostruct-align/1ju2A.t04-thin90.a2m.gz # 1ju2A.t04-thin90.a2m with 2193 sequences, total weight= 2193 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.851981 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1ju2A/info/1ju2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1ju2A/nostruct-align/1ju2A.t04-thin90.a2m.gz, have 133913 columns in 567 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1ysqA/nostruct-align/1ysqA.t04-thin90.a2m.gz # 1ysqA.t04-thin90.a2m with 608 sequences, total weight= 608 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14695 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1ysqA/info/1ysqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1ysqA/nostruct-align/1ysqA.t04-thin90.a2m.gz, have 134094 columns in 568 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t9iA/nostruct-align/1t9iA.t04-thin90.a2m.gz # 1t9iA.t04-thin90.a2m with 358 sequences, total weight= 358 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03827 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t9iA/info/1t9iA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t9iA/nostruct-align/1t9iA.t04-thin90.a2m.gz, have 134247 columns in 569 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d2sA/nostruct-align/1d2sA.t04-thin90.a2m.gz # 1d2sA.t04-thin90.a2m with 508 sequences, total weight= 508 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.96343 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d2sA/info/1d2sA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d2sA/nostruct-align/1d2sA.t04-thin90.a2m.gz, have 134417 columns in 570 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oh4A/nostruct-align/1oh4A.t04-thin90.a2m.gz # 1oh4A.t04-thin90.a2m with 6 sequences, total weight= 6 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2544 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oh4A/info/1oh4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oh4A/nostruct-align/1oh4A.t04-thin90.a2m.gz, have 134591 columns in 571 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ok0A/nostruct-align/1ok0A.t04-thin90.a2m.gz # 1ok0A.t04-thin90.a2m with 8 sequences, total weight= 4.00175 avg weight= 0.500218 18 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ok0A/info/1ok0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ok0A/nostruct-align/1ok0A.t04-thin90.a2m.gz, have 134665 columns in 572 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1thfD/nostruct-align/1thfD.t04-thin90.a2m.gz # 1thfD.t04-thin90.a2m with 709 sequences, total weight= 709 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07821 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1thfD/info/1thfD.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1thfD/nostruct-align/1thfD.t04-thin90.a2m.gz, have 134918 columns in 573 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/7a/7a3hA/nostruct-align/7a3hA.t04-thin90.a2m.gz # 7a3hA.t04-thin90.a2m with 1406 sequences, total weight= 1406 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.80732 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/7a/7a3hA/info/7a3hA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/7a/7a3hA/nostruct-align/7a3hA.t04-thin90.a2m.gz, have 135218 columns in 574 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ejxC/nostruct-align/1ejxC.t04-thin90.a2m.gz # 1ejxC.t04-thin90.a2m with 1398 sequences, total weight= 1398 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18336 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ejxC/info/1ejxC.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1ejxC/nostruct-align/1ejxC.t04-thin90.a2m.gz, have 135774 columns in 575 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tfe/nostruct-align/1tfe.t04-thin90.a2m.gz # 1tfe.t04-thin90.a2m with 274 sequences, total weight= 50.0589 avg weight= 0.182697 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tfe/info/1tfe.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tfe/nostruct-align/1tfe.t04-thin90.a2m.gz, have 135916 columns in 576 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f94A/nostruct-align/1f94A.t04-thin90.a2m.gz # 1f94A.t04-thin90.a2m with 2 sequences, total weight= 1.94772 avg weight= 0.973858 6 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f94A/info/1f94A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f94A/nostruct-align/1f94A.t04-thin90.a2m.gz, have 135979 columns in 577 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kr4A/nostruct-align/1kr4A.t04-thin90.a2m.gz # 1kr4A.t04-thin90.a2m with 83 sequences, total weight= 22.6278 avg weight= 0.272624 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kr4A/info/1kr4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kr4A/nostruct-align/1kr4A.t04-thin90.a2m.gz, have 136089 columns in 578 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ryoA/nostruct-align/1ryoA.t04-thin90.a2m.gz # 1ryoA.t04-thin90.a2m with 218 sequences, total weight= 77.5614 avg weight= 0.355786 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30059 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ryoA/info/1ryoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1ryoA/nostruct-align/1ryoA.t04-thin90.a2m.gz, have 136413 columns in 579 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bu8A/nostruct-align/1bu8A.t04-thin90.a2m.gz # 1bu8A.t04-thin90.a2m with 2333 sequences, total weight= 2333 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0254 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bu8A/info/1bu8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1bu8A/nostruct-align/1bu8A.t04-thin90.a2m.gz, have 136859 columns in 580 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rw1A/nostruct-align/1rw1A.t04-thin90.a2m.gz # 1rw1A.t04-thin90.a2m with 267 sequences, total weight= 62.4655 avg weight= 0.233953 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30097 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rw1A/info/1rw1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rw1A/nostruct-align/1rw1A.t04-thin90.a2m.gz, have 136973 columns in 581 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y4wA/nostruct-align/1y4wA.t04-thin90.a2m.gz # 1y4wA.t04-thin90.a2m with 327 sequences, total weight= 327 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29219 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y4wA/info/1y4wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1y4wA/nostruct-align/1y4wA.t04-thin90.a2m.gz, have 137490 columns in 582 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j24A/nostruct-align/1j24A.t04-thin90.a2m.gz # 1j24A.t04-thin90.a2m with 72 sequences, total weight= 41.2287 avg weight= 0.572621 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j24A/info/1j24A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j24A/nostruct-align/1j24A.t04-thin90.a2m.gz, have 137623 columns in 583 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hxhA/nostruct-align/1hxhA.t04-thin90.a2m.gz # 1hxhA.t04-thin90.a2m with 2373 sequences, total weight= 82.092 avg weight= 0.0345942 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31206 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hxhA/info/1hxhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hxhA/nostruct-align/1hxhA.t04-thin90.a2m.gz, have 137876 columns in 584 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f32A/nostruct-align/1f32A.t04-thin90.a2m.gz # 1f32A.t04-thin90.a2m with 14 sequences, total weight= 8.13777 avg weight= 0.581269 21 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f32A/info/1f32A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f32A/nostruct-align/1f32A.t04-thin90.a2m.gz, have 138003 columns in 585 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jhgA/nostruct-align/1jhgA.t04-thin90.a2m.gz # 1jhgA.t04-thin90.a2m with 34 sequences, total weight= 17.0321 avg weight= 0.500944 35 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jhgA/info/1jhgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jhgA/nostruct-align/1jhgA.t04-thin90.a2m.gz, have 138104 columns in 586 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r0uA/nostruct-align/1r0uA.t04-thin90.a2m.gz # 1r0uA.t04-thin90.a2m with 24 sequences, total weight= 24 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22098 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r0uA/info/1r0uA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r0uA/nostruct-align/1r0uA.t04-thin90.a2m.gz, have 138246 columns in 587 chains # command:CPU_time= 423.18 sec, elapsed time= 467.246 sec) # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/predict-2nd/testing/training-data/ # command:# reading script from file dunbrack-30pc-1763-1.t04-thin90-near-backbone-11 # Prefix for input files set to # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ed8A/nostruct-align/1ed8A.t04-thin90.a2m.gz # 1ed8A.t04-thin90.a2m with 455 sequences, total weight= 455 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01377 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ed8A/info/1ed8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1ed8A/nostruct-align/1ed8A.t04-thin90.a2m.gz, have 449 columns in 1 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2g/2gdm/nostruct-align/2gdm.t04-thin90.a2m.gz # 2gdm.t04-thin90.a2m with 849 sequences, total weight= 849 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16989 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2g/2gdm/info/2gdm.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2g/2gdm/nostruct-align/2gdm.t04-thin90.a2m.gz, have 602 columns in 2 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iukA/nostruct-align/1iukA.t04-thin90.a2m.gz # 1iukA.t04-thin90.a2m with 228 sequences, total weight= 99.9371 avg weight= 0.438321 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30157 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iukA/info/1iukA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iukA/nostruct-align/1iukA.t04-thin90.a2m.gz, have 738 columns in 3 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1senA/nostruct-align/1senA.t04-thin90.a2m.gz # 1senA.t04-thin90.a2m with 1657 sequences, total weight= 1657 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02539 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1senA/info/1senA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1senA/nostruct-align/1senA.t04-thin90.a2m.gz, have 872 columns in 4 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rm6B/nostruct-align/1rm6B.t04-thin90.a2m.gz # 1rm6B.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.621072 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rm6B/info/1rm6B.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rm6B/nostruct-align/1rm6B.t04-thin90.a2m.gz, have 1195 columns in 5 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jtvA/nostruct-align/1jtvA.t04-thin90.a2m.gz # 1jtvA.t04-thin90.a2m with 2365 sequences, total weight= 321.275 avg weight= 0.135846 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32675 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jtvA/info/1jtvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jtvA/nostruct-align/1jtvA.t04-thin90.a2m.gz, have 1473 columns in 6 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g5aA/nostruct-align/1g5aA.t04-thin90.a2m.gz # 1g5aA.t04-thin90.a2m with 1316 sequences, total weight= 1316 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04322 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g5aA/info/1g5aA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g5aA/nostruct-align/1g5aA.t04-thin90.a2m.gz, have 2101 columns in 7 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ro0A/nostruct-align/1ro0A.t04-thin90.a2m.gz # 1ro0A.t04-thin90.a2m with 37 sequences, total weight= 37 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22366 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ro0A/info/1ro0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1ro0A/nostruct-align/1ro0A.t04-thin90.a2m.gz, have 2311 columns in 8 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xg0C/nostruct-align/1xg0C.t04-thin90.a2m.gz # 1xg0C.t04-thin90.a2m with 258 sequences, total weight= 28.1199 avg weight= 0.108992 44 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xg0C/info/1xg0C.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xg0C/nostruct-align/1xg0C.t04-thin90.a2m.gz, have 2485 columns in 9 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k2eA/nostruct-align/1k2eA.t04-thin90.a2m.gz # 1k2eA.t04-thin90.a2m with 1553 sequences, total weight= 1553 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.832023 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k2eA/info/1k2eA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k2eA/nostruct-align/1k2eA.t04-thin90.a2m.gz, have 2637 columns in 10 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1km4A/nostruct-align/1km4A.t04-thin90.a2m.gz # 1km4A.t04-thin90.a2m with 596 sequences, total weight= 596 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12991 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1km4A/info/1km4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1km4A/nostruct-align/1km4A.t04-thin90.a2m.gz, have 2849 columns in 11 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cex/nostruct-align/1cex.t04-thin90.a2m.gz # 1cex.t04-thin90.a2m with 151 sequences, total weight= 151 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07718 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cex/info/1cex.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1cex/nostruct-align/1cex.t04-thin90.a2m.gz, have 3046 columns in 12 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qqfA/nostruct-align/1qqfA.t04-thin90.a2m.gz # 1qqfA.t04-thin90.a2m with 294 sequences, total weight= 294 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11974 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qqfA/info/1qqfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qqfA/nostruct-align/1qqfA.t04-thin90.a2m.gz, have 3323 columns in 13 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gd0A/nostruct-align/1gd0A.t04-thin90.a2m.gz # 1gd0A.t04-thin90.a2m with 52 sequences, total weight= 32.1888 avg weight= 0.619015 38 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gd0A/info/1gd0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gd0A/nostruct-align/1gd0A.t04-thin90.a2m.gz, have 3441 columns in 14 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r77A/nostruct-align/1r77A.t04-thin90.a2m.gz # 1r77A.t04-thin90.a2m with 17 sequences, total weight= 9.19686 avg weight= 0.540992 21 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r77A/info/1r77A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r77A/nostruct-align/1r77A.t04-thin90.a2m.gz, have 3540 columns in 15 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x82A/nostruct-align/1x82A.t04-thin90.a2m.gz # 1x82A.t04-thin90.a2m with 256 sequences, total weight= 256 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.921266 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x82A/info/1x82A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1x82A/nostruct-align/1x82A.t04-thin90.a2m.gz, have 3730 columns in 16 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1atzA/nostruct-align/1atzA.t04-thin90.a2m.gz # 1atzA.t04-thin90.a2m with 1046 sequences, total weight= 1046 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.961005 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1atzA/info/1atzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1atzA/nostruct-align/1atzA.t04-thin90.a2m.gz, have 3914 columns in 17 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v9yA/nostruct-align/1v9yA.t04-thin90.a2m.gz # 1v9yA.t04-thin90.a2m with 3343 sequences, total weight= 3343 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06346 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v9yA/info/1v9yA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v9yA/nostruct-align/1v9yA.t04-thin90.a2m.gz, have 4017 columns in 18 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ocyA/nostruct-align/1ocyA.t04-thin90.a2m.gz # 1ocyA.t04-thin90.a2m with 99 sequences, total weight= 99 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25474 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ocyA/info/1ocyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ocyA/nostruct-align/1ocyA.t04-thin90.a2m.gz, have 4215 columns in 19 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fobA/nostruct-align/1fobA.t04-thin90.a2m.gz # 1fobA.t04-thin90.a2m with 477 sequences, total weight= 477 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.820188 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fobA/info/1fobA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fobA/nostruct-align/1fobA.t04-thin90.a2m.gz, have 4549 columns in 20 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dwkA/nostruct-align/1dwkA.t04-thin90.a2m.gz # 1dwkA.t04-thin90.a2m with 35 sequences, total weight= 9.56828 avg weight= 0.273379 27 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dwkA/info/1dwkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dwkA/nostruct-align/1dwkA.t04-thin90.a2m.gz, have 4705 columns in 21 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ugpB/nostruct-align/1ugpB.t04-thin90.a2m.gz # 1ugpB.t04-thin90.a2m with 25 sequences, total weight= 14.3546 avg weight= 0.574184 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ugpB/info/1ugpB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ugpB/nostruct-align/1ugpB.t04-thin90.a2m.gz, have 4931 columns in 22 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ijbA/nostruct-align/1ijbA.t04-thin90.a2m.gz # 1ijbA.t04-thin90.a2m with 1087 sequences, total weight= 1087 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.953688 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ijbA/info/1ijbA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1ijbA/nostruct-align/1ijbA.t04-thin90.a2m.gz, have 5133 columns in 23 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lqvA/nostruct-align/1lqvA.t04-thin90.a2m.gz # 1lqvA.t04-thin90.a2m with 651 sequences, total weight= 12.6576 avg weight= 0.0194433 35 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lqvA/info/1lqvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lqvA/nostruct-align/1lqvA.t04-thin90.a2m.gz, have 5305 columns in 24 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xodA/nostruct-align/1xodA.t04-thin90.a2m.gz # 1xodA.t04-thin90.a2m with 51 sequences, total weight= 10.8912 avg weight= 0.213553 27 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xodA/info/1xodA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xodA/nostruct-align/1xodA.t04-thin90.a2m.gz, have 5410 columns in 25 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cc8A/nostruct-align/1cc8A.t04-thin90.a2m.gz # 1cc8A.t04-thin90.a2m with 222 sequences, total weight= 66.0762 avg weight= 0.297641 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30174 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cc8A/info/1cc8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1cc8A/nostruct-align/1cc8A.t04-thin90.a2m.gz, have 5482 columns in 26 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wqjB/nostruct-align/1wqjB.t04-thin90.a2m.gz # 1wqjB.t04-thin90.a2m with 71 sequences, total weight= 17.0062 avg weight= 0.239524 32 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wqjB/info/1wqjB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wqjB/nostruct-align/1wqjB.t04-thin90.a2m.gz, have 5562 columns in 27 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1on2A/nostruct-align/1on2A.t04-thin90.a2m.gz # 1on2A.t04-thin90.a2m with 461 sequences, total weight= 461 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.99043 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1on2A/info/1on2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1on2A/nostruct-align/1on2A.t04-thin90.a2m.gz, have 5697 columns in 28 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f3uA/nostruct-align/1f3uA.t04-thin90.a2m.gz # 1f3uA.t04-thin90.a2m with 16 sequences, total weight= 12.6034 avg weight= 0.787712 22 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f3uA/info/1f3uA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f3uA/nostruct-align/1f3uA.t04-thin90.a2m.gz, have 5815 columns in 29 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rqpA/nostruct-align/1rqpA.t04-thin90.a2m.gz # 1rqpA.t04-thin90.a2m with 45 sequences, total weight= 19.9973 avg weight= 0.444385 34 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rqpA/info/1rqpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rqpA/nostruct-align/1rqpA.t04-thin90.a2m.gz, have 6106 columns in 30 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vpt/nostruct-align/1vpt.t04-thin90.a2m.gz # 1vpt.t04-thin90.a2m with 15 sequences, total weight= 8.15505 avg weight= 0.54367 20 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vpt/info/1vpt.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vpt/nostruct-align/1vpt.t04-thin90.a2m.gz, have 6397 columns in 31 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p4cA/nostruct-align/1p4cA.t04-thin90.a2m.gz # 1p4cA.t04-thin90.a2m with 1638 sequences, total weight= 1638 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.966861 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p4cA/info/1p4cA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p4cA/nostruct-align/1p4cA.t04-thin90.a2m.gz, have 6750 columns in 32 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s5dA/nostruct-align/1s5dA.t04-thin90.a2m.gz # 1s5dA.t04-thin90.a2m with 34 sequences, total weight= 33.56 avg weight= 0.987058 19 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s5dA/info/1s5dA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1s5dA/nostruct-align/1s5dA.t04-thin90.a2m.gz, have 6968 columns in 33 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m40A/nostruct-align/1m40A.t04-thin90.a2m.gz # 1m40A.t04-thin90.a2m with 1080 sequences, total weight= 1080 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.932759 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m40A/info/1m40A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m40A/nostruct-align/1m40A.t04-thin90.a2m.gz, have 7231 columns in 34 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p5fA/nostruct-align/1p5fA.t04-thin90.a2m.gz # 1p5fA.t04-thin90.a2m with 725 sequences, total weight= 725 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11935 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p5fA/info/1p5fA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p5fA/nostruct-align/1p5fA.t04-thin90.a2m.gz, have 7417 columns in 35 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a7s/nostruct-align/1a7s.t04-thin90.a2m.gz # 1a7s.t04-thin90.a2m with 1689 sequences, total weight= 842.378 avg weight= 0.498743 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31801 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a7s/info/1a7s.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1a7s/nostruct-align/1a7s.t04-thin90.a2m.gz, have 7638 columns in 36 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i58A/nostruct-align/1i58A.t04-thin90.a2m.gz # 1i58A.t04-thin90.a2m with 2385 sequences, total weight= 265.893 avg weight= 0.111486 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32696 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i58A/info/1i58A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i58A/nostruct-align/1i58A.t04-thin90.a2m.gz, have 7827 columns in 37 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uujA/nostruct-align/1uujA.t04-thin90.a2m.gz # 1uujA.t04-thin90.a2m with 20 sequences, total weight= 8.04178 avg weight= 0.402089 25 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uujA/info/1uujA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uujA/nostruct-align/1uujA.t04-thin90.a2m.gz, have 7903 columns in 38 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v8yA/nostruct-align/1v8yA.t04-thin90.a2m.gz # 1v8yA.t04-thin90.a2m with 1874 sequences, total weight= 1874 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.86069 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v8yA/info/1v8yA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v8yA/nostruct-align/1v8yA.t04-thin90.a2m.gz, have 8053 columns in 39 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1usmA/nostruct-align/1usmA.t04-thin90.a2m.gz # 1usmA.t04-thin90.a2m with 103 sequences, total weight= 18.4832 avg weight= 0.179449 43 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1usmA/info/1usmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1usmA/nostruct-align/1usmA.t04-thin90.a2m.gz, have 8130 columns in 40 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fr2B/nostruct-align/1fr2B.t04-thin90.a2m.gz # 1fr2B.t04-thin90.a2m with 15 sequences, total weight= 4.58618 avg weight= 0.305745 21 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fr2B/info/1fr2B.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fr2B/nostruct-align/1fr2B.t04-thin90.a2m.gz, have 8261 columns in 41 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d2vA/nostruct-align/1d2vA.t04-thin90.a2m.gz # 1d2vA.t04-thin90.a2m with 80 sequences, total weight= 20.9676 avg weight= 0.262095 40 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d2vA/info/1d2vA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d2vA/nostruct-align/1d2vA.t04-thin90.a2m.gz, have 8365 columns in 42 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dz3A/nostruct-align/1dz3A.t04-thin90.a2m.gz # 1dz3A.t04-thin90.a2m with 2370 sequences, total weight= 113.693 avg weight= 0.0479718 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32779 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dz3A/info/1dz3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dz3A/nostruct-align/1dz3A.t04-thin90.a2m.gz, have 8488 columns in 43 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o2dA/nostruct-align/1o2dA.t04-thin90.a2m.gz # 1o2dA.t04-thin90.a2m with 628 sequences, total weight= 628 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14638 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o2dA/info/1o2dA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o2dA/nostruct-align/1o2dA.t04-thin90.a2m.gz, have 8847 columns in 44 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qu9A/nostruct-align/1qu9A.t04-thin90.a2m.gz # 1qu9A.t04-thin90.a2m with 504 sequences, total weight= 289.877 avg weight= 0.575152 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30742 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qu9A/info/1qu9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qu9A/nostruct-align/1qu9A.t04-thin90.a2m.gz, have 8974 columns in 45 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rqwA/nostruct-align/1rqwA.t04-thin90.a2m.gz # 1rqwA.t04-thin90.a2m with 149 sequences, total weight= 16.1557 avg weight= 0.108427 35 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rqwA/info/1rqwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rqwA/nostruct-align/1rqwA.t04-thin90.a2m.gz, have 9181 columns in 46 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m9xC/nostruct-align/1m9xC.t04-thin90.a2m.gz # 1m9xC.t04-thin90.a2m with 86 sequences, total weight= 2.92612 avg weight= 0.0340246 15 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m9xC/info/1m9xC.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m9xC/nostruct-align/1m9xC.t04-thin90.a2m.gz, have 9327 columns in 47 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ruwA/nostruct-align/1ruwA.t04-thin90.a2m.gz # 1ruwA.t04-thin90.a2m with 1484 sequences, total weight= 1484 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2653 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ruwA/info/1ruwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1ruwA/nostruct-align/1ruwA.t04-thin90.a2m.gz, have 9396 columns in 48 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p5zB/nostruct-align/1p5zB.t04-thin90.a2m.gz # 1p5zB.t04-thin90.a2m with 1881 sequences, total weight= 1881 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.773522 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p5zB/info/1p5zB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p5zB/nostruct-align/1p5zB.t04-thin90.a2m.gz, have 9625 columns in 49 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1khxA/nostruct-align/1khxA.t04-thin90.a2m.gz # 1khxA.t04-thin90.a2m with 43 sequences, total weight= 24.7236 avg weight= 0.574967 36 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1khxA/info/1khxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1khxA/nostruct-align/1khxA.t04-thin90.a2m.gz, have 9828 columns in 50 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hbnC/nostruct-align/1hbnC.t04-thin90.a2m.gz # 1hbnC.t04-thin90.a2m with 12 sequences, total weight= 2.98036 avg weight= 0.248364 12 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hbnC/info/1hbnC.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hbnC/nostruct-align/1hbnC.t04-thin90.a2m.gz, have 10075 columns in 51 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bm8/nostruct-align/1bm8.t04-thin90.a2m.gz # 1bm8.t04-thin90.a2m with 30 sequences, total weight= 10.3741 avg weight= 0.345804 26 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bm8/info/1bm8.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1bm8/nostruct-align/1bm8.t04-thin90.a2m.gz, have 10174 columns in 52 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2n/2nlrA/nostruct-align/2nlrA.t04-thin90.a2m.gz # 2nlrA.t04-thin90.a2m with 54 sequences, total weight= 28.9291 avg weight= 0.535724 39 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2n/2nlrA/info/2nlrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2n/2nlrA/nostruct-align/2nlrA.t04-thin90.a2m.gz, have 10396 columns in 53 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uebA/nostruct-align/1uebA.t04-thin90.a2m.gz # 1uebA.t04-thin90.a2m with 218 sequences, total weight= 27.9837 avg weight= 0.128366 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uebA/info/1uebA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uebA/nostruct-align/1uebA.t04-thin90.a2m.gz, have 10580 columns in 54 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dytA/nostruct-align/1dytA.t04-thin90.a2m.gz # 1dytA.t04-thin90.a2m with 176 sequences, total weight= 28.639 avg weight= 0.162722 44 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dytA/info/1dytA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dytA/nostruct-align/1dytA.t04-thin90.a2m.gz, have 10713 columns in 55 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rreA/nostruct-align/1rreA.t04-thin90.a2m.gz # 1rreA.t04-thin90.a2m with 413 sequences, total weight= 280.738 avg weight= 0.679753 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30526 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rreA/info/1rreA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rreA/nostruct-align/1rreA.t04-thin90.a2m.gz, have 10895 columns in 56 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iwlA/nostruct-align/1iwlA.t04-thin90.a2m.gz # 1iwlA.t04-thin90.a2m with 128 sequences, total weight= 128 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05709 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iwlA/info/1iwlA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iwlA/nostruct-align/1iwlA.t04-thin90.a2m.gz, have 11072 columns in 57 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2biiA/nostruct-align/2biiA.t04-thin90.a2m.gz # 2biiA.t04-thin90.a2m with 253 sequences, total weight= 83.4479 avg weight= 0.329833 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2biiA/info/2biiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2b/2biiA/nostruct-align/2biiA.t04-thin90.a2m.gz, have 11487 columns in 58 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1evyA/nostruct-align/1evyA.t04-thin90.a2m.gz # 1evyA.t04-thin90.a2m with 2122 sequences, total weight= 2122 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.890204 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1evyA/info/1evyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1evyA/nostruct-align/1evyA.t04-thin90.a2m.gz, have 11833 columns in 59 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2p/2pvbA/nostruct-align/2pvbA.t04-thin90.a2m.gz # 2pvbA.t04-thin90.a2m with 964 sequences, total weight= 964 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17998 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2p/2pvbA/info/2pvbA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2p/2pvbA/nostruct-align/2pvbA.t04-thin90.a2m.gz, have 11940 columns in 60 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jcdA/nostruct-align/1jcdA.t04-thin90.a2m.gz # 1jcdA.t04-thin90.a2m with 6 sequences, total weight= 2.45615 avg weight= 0.409359 7 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jcdA/info/1jcdA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jcdA/nostruct-align/1jcdA.t04-thin90.a2m.gz, have 11990 columns in 61 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a2pA/nostruct-align/1a2pA.t04-thin90.a2m.gz # 1a2pA.t04-thin90.a2m with 30 sequences, total weight= 8.26734 avg weight= 0.275578 25 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a2pA/info/1a2pA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1a2pA/nostruct-align/1a2pA.t04-thin90.a2m.gz, have 12098 columns in 62 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fn9A/nostruct-align/1fn9A.t04-thin90.a2m.gz # 1fn9A.t04-thin90.a2m with 9 sequences, total weight= 8.39152 avg weight= 0.932391 13 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fn9A/info/1fn9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fn9A/nostruct-align/1fn9A.t04-thin90.a2m.gz, have 12463 columns in 63 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rfyA/nostruct-align/1rfyA.t04-thin90.a2m.gz # 1rfyA.t04-thin90.a2m with 2 sequences, total weight= 1.97122 avg weight= 0.985608 6 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rfyA/info/1rfyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rfyA/nostruct-align/1rfyA.t04-thin90.a2m.gz, have 12552 columns in 64 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n1jB/nostruct-align/1n1jB.t04-thin90.a2m.gz # 1n1jB.t04-thin90.a2m with 71 sequences, total weight= 16.9165 avg weight= 0.23826 35 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n1jB/info/1n1jB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n1jB/nostruct-align/1n1jB.t04-thin90.a2m.gz, have 12630 columns in 65 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y0yA/nostruct-align/1y0yA.t04-thin90.a2m.gz # 1y0yA.t04-thin90.a2m with 1608 sequences, total weight= 1608 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.952994 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y0yA/info/1y0yA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1y0yA/nostruct-align/1y0yA.t04-thin90.a2m.gz, have 12965 columns in 66 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j27A/nostruct-align/1j27A.t04-thin90.a2m.gz # 1j27A.t04-thin90.a2m with 27 sequences, total weight= 16.8656 avg weight= 0.624652 27 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j27A/info/1j27A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j27A/nostruct-align/1j27A.t04-thin90.a2m.gz, have 13063 columns in 67 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g12A/nostruct-align/1g12A.t04-thin90.a2m.gz # 1g12A.t04-thin90.a2m with 40 sequences, total weight= 40 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28143 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g12A/info/1g12A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g12A/nostruct-align/1g12A.t04-thin90.a2m.gz, have 13230 columns in 68 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1ng6A/nostruct-align/1ng6A.t04-thin90.a2m.gz # 1ng6A.t04-thin90.a2m with 95 sequences, total weight= 17.7302 avg weight= 0.186634 36 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1ng6A/info/1ng6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1ng6A/nostruct-align/1ng6A.t04-thin90.a2m.gz, have 13378 columns in 69 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q7zA/nostruct-align/1q7zA.t04-thin90.a2m.gz # 1q7zA.t04-thin90.a2m with 394 sequences, total weight= 266.407 avg weight= 0.67616 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30207 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q7zA/info/1q7zA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q7zA/nostruct-align/1q7zA.t04-thin90.a2m.gz, have 13937 columns in 70 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1ybkA/nostruct-align/1ybkA.t04-thin90.a2m.gz # 1ybkA.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.59493 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1ybkA/info/1ybkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1ybkA/nostruct-align/1ybkA.t04-thin90.a2m.gz, have 13989 columns in 71 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nc5A/nostruct-align/1nc5A.t04-thin90.a2m.gz # 1nc5A.t04-thin90.a2m with 106 sequences, total weight= 106 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.99437 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nc5A/info/1nc5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nc5A/nostruct-align/1nc5A.t04-thin90.a2m.gz, have 14352 columns in 72 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1llmC/nostruct-align/1llmC.t04-thin90.a2m.gz # 1llmC.t04-thin90.a2m with 5083 sequences, total weight= 177.561 avg weight= 0.0349322 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32008 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1llmC/info/1llmC.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1llmC/nostruct-align/1llmC.t04-thin90.a2m.gz, have 14439 columns in 73 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1su8A/nostruct-align/1su8A.t04-thin90.a2m.gz # 1su8A.t04-thin90.a2m with 89 sequences, total weight= 42.4872 avg weight= 0.477384 41 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1su8A/info/1su8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1su8A/nostruct-align/1su8A.t04-thin90.a2m.gz, have 15072 columns in 74 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mba/nostruct-align/1mba.t04-thin90.a2m.gz # 1mba.t04-thin90.a2m with 742 sequences, total weight= 742 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21836 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mba/info/1mba.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mba/nostruct-align/1mba.t04-thin90.a2m.gz, have 15218 columns in 75 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tjxA/nostruct-align/1tjxA.t04-thin90.a2m.gz # 1tjxA.t04-thin90.a2m with 1861 sequences, total weight= 1861 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.869185 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tjxA/info/1tjxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tjxA/nostruct-align/1tjxA.t04-thin90.a2m.gz, have 15374 columns in 76 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n8vA/nostruct-align/1n8vA.t04-thin90.a2m.gz # 1n8vA.t04-thin90.a2m with 50 sequences, total weight= 11.7681 avg weight= 0.235362 29 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n8vA/info/1n8vA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n8vA/nostruct-align/1n8vA.t04-thin90.a2m.gz, have 15475 columns in 77 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f1uA/nostruct-align/1f1uA.t04-thin90.a2m.gz # 1f1uA.t04-thin90.a2m with 1420 sequences, total weight= 1420 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.958028 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f1uA/info/1f1uA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f1uA/nostruct-align/1f1uA.t04-thin90.a2m.gz, have 15797 columns in 78 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tqjA/nostruct-align/1tqjA.t04-thin90.a2m.gz # 1tqjA.t04-thin90.a2m with 1629 sequences, total weight= 1629 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.966443 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tqjA/info/1tqjA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tqjA/nostruct-align/1tqjA.t04-thin90.a2m.gz, have 16014 columns in 79 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oneA/nostruct-align/1oneA.t04-thin90.a2m.gz # 1oneA.t04-thin90.a2m with 528 sequences, total weight= 95.4543 avg weight= 0.180785 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30043 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oneA/info/1oneA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oneA/nostruct-align/1oneA.t04-thin90.a2m.gz, have 16450 columns in 80 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gskA/nostruct-align/1gskA.t04-thin90.a2m.gz # 1gskA.t04-thin90.a2m with 703 sequences, total weight= 703 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07952 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gskA/info/1gskA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gskA/nostruct-align/1gskA.t04-thin90.a2m.gz, have 16952 columns in 81 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j3aA/nostruct-align/1j3aA.t04-thin90.a2m.gz # 1j3aA.t04-thin90.a2m with 213 sequences, total weight= 31.0003 avg weight= 0.145541 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j3aA/info/1j3aA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j3aA/nostruct-align/1j3aA.t04-thin90.a2m.gz, have 17081 columns in 82 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dgwA/nostruct-align/1dgwA.t04-thin90.a2m.gz # 1dgwA.t04-thin90.a2m with 473 sequences, total weight= 473 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16734 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dgwA/info/1dgwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dgwA/nostruct-align/1dgwA.t04-thin90.a2m.gz, have 17259 columns in 83 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w50A/nostruct-align/1w50A.t04-thin90.a2m.gz # 1w50A.t04-thin90.a2m with 813 sequences, total weight= 813 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17036 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w50A/info/1w50A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w50A/nostruct-align/1w50A.t04-thin90.a2m.gz, have 17636 columns in 84 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gx5A/nostruct-align/1gx5A.t04-thin90.a2m.gz # 1gx5A.t04-thin90.a2m with 300 sequences, total weight= 300 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26462 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gx5A/info/1gx5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gx5A/nostruct-align/1gx5A.t04-thin90.a2m.gz, have 18166 columns in 85 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mun/nostruct-align/1mun.t04-thin90.a2m.gz # 1mun.t04-thin90.a2m with 556 sequences, total weight= 556 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12999 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mun/info/1mun.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mun/nostruct-align/1mun.t04-thin90.a2m.gz, have 18391 columns in 86 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54B/nostruct-align/1v54B.t04-thin90.a2m.gz # 1v54B.t04-thin90.a2m with 481 sequences, total weight= 4.89322 avg weight= 0.010173 26 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54B/info/1v54B.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v54B/nostruct-align/1v54B.t04-thin90.a2m.gz, have 18618 columns in 87 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1owlA/nostruct-align/1owlA.t04-thin90.a2m.gz # 1owlA.t04-thin90.a2m with 270 sequences, total weight= 270 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25733 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1owlA/info/1owlA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1owlA/nostruct-align/1owlA.t04-thin90.a2m.gz, have 19091 columns in 88 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rrmA/nostruct-align/1rrmA.t04-thin90.a2m.gz # 1rrmA.t04-thin90.a2m with 700 sequences, total weight= 700 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13282 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rrmA/info/1rrmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rrmA/nostruct-align/1rrmA.t04-thin90.a2m.gz, have 19476 columns in 89 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d0dA/nostruct-align/1d0dA.t04-thin90.a2m.gz # 1d0dA.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20764 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d0dA/info/1d0dA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d0dA/nostruct-align/1d0dA.t04-thin90.a2m.gz, have 19536 columns in 90 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ibyA/nostruct-align/1ibyA.t04-thin90.a2m.gz # 1ibyA.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.602177 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ibyA/info/1ibyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1ibyA/nostruct-align/1ibyA.t04-thin90.a2m.gz, have 19648 columns in 91 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o82A/nostruct-align/1o82A.t04-thin90.a2m.gz # 1o82A.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.634682 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o82A/info/1o82A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o82A/nostruct-align/1o82A.t04-thin90.a2m.gz, have 19718 columns in 92 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1brt/nostruct-align/1brt.t04-thin90.a2m.gz # 1brt.t04-thin90.a2m with 2380 sequences, total weight= 2380 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.807996 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1brt/info/1brt.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1brt/nostruct-align/1brt.t04-thin90.a2m.gz, have 19995 columns in 93 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oqqA/nostruct-align/1oqqA.t04-thin90.a2m.gz # 1oqqA.t04-thin90.a2m with 334 sequences, total weight= 334 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28647 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oqqA/info/1oqqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oqqA/nostruct-align/1oqqA.t04-thin90.a2m.gz, have 20101 columns in 94 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nrjB/nostruct-align/1nrjB.t04-thin90.a2m.gz # 1nrjB.t04-thin90.a2m with 1437 sequences, total weight= 1437 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28757 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nrjB/info/1nrjB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nrjB/nostruct-align/1nrjB.t04-thin90.a2m.gz, have 20292 columns in 95 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1behA/nostruct-align/1behA.t04-thin90.a2m.gz # 1behA.t04-thin90.a2m with 214 sequences, total weight= 214 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21852 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1behA/info/1behA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1behA/nostruct-align/1behA.t04-thin90.a2m.gz, have 20476 columns in 96 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gvjA/nostruct-align/1gvjA.t04-thin90.a2m.gz # 1gvjA.t04-thin90.a2m with 162 sequences, total weight= 44.5635 avg weight= 0.275084 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30057 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gvjA/info/1gvjA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gvjA/nostruct-align/1gvjA.t04-thin90.a2m.gz, have 20617 columns in 97 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sgwA/nostruct-align/1sgwA.t04-thin90.a2m.gz # 1sgwA.t04-thin90.a2m with 2179 sequences, total weight= 20.7217 avg weight= 0.00950975 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sgwA/info/1sgwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sgwA/nostruct-align/1sgwA.t04-thin90.a2m.gz, have 20817 columns in 98 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nkiA/nostruct-align/1nkiA.t04-thin90.a2m.gz # 1nkiA.t04-thin90.a2m with 1732 sequences, total weight= 1732 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.831123 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nkiA/info/1nkiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nkiA/nostruct-align/1nkiA.t04-thin90.a2m.gz, have 20951 columns in 99 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tfzA/nostruct-align/1tfzA.t04-thin90.a2m.gz # 1tfzA.t04-thin90.a2m with 840 sequences, total weight= 840 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08056 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tfzA/info/1tfzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tfzA/nostruct-align/1tfzA.t04-thin90.a2m.gz, have 21315 columns in 100 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rv9A/nostruct-align/1rv9A.t04-thin90.a2m.gz # 1rv9A.t04-thin90.a2m with 140 sequences, total weight= 44.7565 avg weight= 0.319689 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rv9A/info/1rv9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rv9A/nostruct-align/1rv9A.t04-thin90.a2m.gz, have 21557 columns in 101 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1ypyA/nostruct-align/1ypyA.t04-thin90.a2m.gz # 1ypyA.t04-thin90.a2m with 30 sequences, total weight= 12.7387 avg weight= 0.424623 30 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1ypyA/info/1ypyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1ypyA/nostruct-align/1ypyA.t04-thin90.a2m.gz, have 21739 columns in 102 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mg7A/nostruct-align/1mg7A.t04-thin90.a2m.gz # 1mg7A.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.809779 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mg7A/info/1mg7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mg7A/nostruct-align/1mg7A.t04-thin90.a2m.gz, have 22090 columns in 103 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1us5A/nostruct-align/1us5A.t04-thin90.a2m.gz # 1us5A.t04-thin90.a2m with 2329 sequences, total weight= 2329 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.806009 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1us5A/info/1us5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1us5A/nostruct-align/1us5A.t04-thin90.a2m.gz, have 22387 columns in 104 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1ctf/nostruct-align/1ctf.t04-thin90.a2m.gz # 1ctf.t04-thin90.a2m with 178 sequences, total weight= 7.47705 avg weight= 0.0420059 31 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1ctf/info/1ctf.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1ctf/nostruct-align/1ctf.t04-thin90.a2m.gz, have 22455 columns in 105 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gai/nostruct-align/1gai.t04-thin90.a2m.gz # 1gai.t04-thin90.a2m with 94 sequences, total weight= 94 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23217 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gai/info/1gai.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gai/nostruct-align/1gai.t04-thin90.a2m.gz, have 22927 columns in 106 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jsdB/nostruct-align/1jsdB.t04-thin90.a2m.gz # 1jsdB.t04-thin90.a2m with 23 sequences, total weight= 4.25038 avg weight= 0.184799 19 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jsdB/info/1jsdB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jsdB/nostruct-align/1jsdB.t04-thin90.a2m.gz, have 23087 columns in 107 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e9gA/nostruct-align/1e9gA.t04-thin90.a2m.gz # 1e9gA.t04-thin90.a2m with 182 sequences, total weight= 47.2588 avg weight= 0.259664 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e9gA/info/1e9gA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e9gA/nostruct-align/1e9gA.t04-thin90.a2m.gz, have 23371 columns in 108 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lucA/nostruct-align/1lucA.t04-thin90.a2m.gz # 1lucA.t04-thin90.a2m with 630 sequences, total weight= 630 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12097 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lucA/info/1lucA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lucA/nostruct-align/1lucA.t04-thin90.a2m.gz, have 23697 columns in 109 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mtyG/nostruct-align/1mtyG.t04-thin90.a2m.gz # 1mtyG.t04-thin90.a2m with 5 sequences, total weight= 3.64262 avg weight= 0.728523 12 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mtyG/info/1mtyG.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mtyG/nostruct-align/1mtyG.t04-thin90.a2m.gz, have 23859 columns in 110 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s5aA/nostruct-align/1s5aA.t04-thin90.a2m.gz # 1s5aA.t04-thin90.a2m with 361 sequences, total weight= 361 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.893056 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s5aA/info/1s5aA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1s5aA/nostruct-align/1s5aA.t04-thin90.a2m.gz, have 23998 columns in 111 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1ntvA/nostruct-align/1ntvA.t04-thin90.a2m.gz # 1ntvA.t04-thin90.a2m with 138 sequences, total weight= 138 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09721 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1ntvA/info/1ntvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1ntvA/nostruct-align/1ntvA.t04-thin90.a2m.gz, have 24150 columns in 112 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h1nA/nostruct-align/1h1nA.t04-thin90.a2m.gz # 1h1nA.t04-thin90.a2m with 1298 sequences, total weight= 1298 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.831458 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h1nA/info/1h1nA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h1nA/nostruct-align/1h1nA.t04-thin90.a2m.gz, have 24455 columns in 113 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sx7A/nostruct-align/1sx7A.t04-thin90.a2m.gz # 1sx7A.t04-thin90.a2m with 105 sequences, total weight= 82.0232 avg weight= 0.781173 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sx7A/info/1sx7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sx7A/nostruct-align/1sx7A.t04-thin90.a2m.gz, have 24619 columns in 114 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s29A/nostruct-align/1s29A.t04-thin90.a2m.gz # 1s29A.t04-thin90.a2m with 81 sequences, total weight= 27.2436 avg weight= 0.336341 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s29A/info/1s29A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1s29A/nostruct-align/1s29A.t04-thin90.a2m.gz, have 24711 columns in 115 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f8mA/nostruct-align/1f8mA.t04-thin90.a2m.gz # 1f8mA.t04-thin90.a2m with 227 sequences, total weight= 73.6099 avg weight= 0.324273 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f8mA/info/1f8mA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f8mA/nostruct-align/1f8mA.t04-thin90.a2m.gz, have 25138 columns in 116 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1earA/nostruct-align/1earA.t04-thin90.a2m.gz # 1earA.t04-thin90.a2m with 68 sequences, total weight= 43.9975 avg weight= 0.647023 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1earA/info/1earA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1earA/nostruct-align/1earA.t04-thin90.a2m.gz, have 25280 columns in 117 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r9wA/nostruct-align/1r9wA.t04-thin90.a2m.gz # 1r9wA.t04-thin90.a2m with 89 sequences, total weight= 11.2789 avg weight= 0.12673 32 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r9wA/info/1r9wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r9wA/nostruct-align/1r9wA.t04-thin90.a2m.gz, have 25418 columns in 118 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1woqA/nostruct-align/1woqA.t04-thin90.a2m.gz # 1woqA.t04-thin90.a2m with 766 sequences, total weight= 766 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12253 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1woqA/info/1woqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1woqA/nostruct-align/1woqA.t04-thin90.a2m.gz, have 25671 columns in 119 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xubA/nostruct-align/1xubA.t04-thin90.a2m.gz # 1xubA.t04-thin90.a2m with 392 sequences, total weight= 392 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17913 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xubA/info/1xubA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xubA/nostruct-align/1xubA.t04-thin90.a2m.gz, have 25949 columns in 120 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vimA/nostruct-align/1vimA.t04-thin90.a2m.gz # 1vimA.t04-thin90.a2m with 1055 sequences, total weight= 1055 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.989025 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vimA/info/1vimA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vimA/nostruct-align/1vimA.t04-thin90.a2m.gz, have 26141 columns in 121 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eluA/nostruct-align/1eluA.t04-thin90.a2m.gz # 1eluA.t04-thin90.a2m with 2188 sequences, total weight= 2188 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.973012 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eluA/info/1eluA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1eluA/nostruct-align/1eluA.t04-thin90.a2m.gz, have 26522 columns in 122 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m65A/nostruct-align/1m65A.t04-thin90.a2m.gz # 1m65A.t04-thin90.a2m with 529 sequences, total weight= 529 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.896793 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m65A/info/1m65A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m65A/nostruct-align/1m65A.t04-thin90.a2m.gz, have 26756 columns in 123 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1whzA/nostruct-align/1whzA.t04-thin90.a2m.gz # 1whzA.t04-thin90.a2m with 58 sequences, total weight= 24.0537 avg weight= 0.414719 36 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1whzA/info/1whzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1whzA/nostruct-align/1whzA.t04-thin90.a2m.gz, have 26826 columns in 124 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e2kA/nostruct-align/1e2kA.t04-thin90.a2m.gz # 1e2kA.t04-thin90.a2m with 236 sequences, total weight= 236 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14405 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e2kA/info/1e2kA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e2kA/nostruct-align/1e2kA.t04-thin90.a2m.gz, have 27134 columns in 125 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cs6A/nostruct-align/1cs6A.t04-thin90.a2m.gz # 1cs6A.t04-thin90.a2m with 2153 sequences, total weight= 2153 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.864112 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cs6A/info/1cs6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1cs6A/nostruct-align/1cs6A.t04-thin90.a2m.gz, have 27516 columns in 126 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y0hA/nostruct-align/1y0hA.t04-thin90.a2m.gz # 1y0hA.t04-thin90.a2m with 258 sequences, total weight= 258 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.990839 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y0hA/info/1y0hA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1y0hA/nostruct-align/1y0hA.t04-thin90.a2m.gz, have 27617 columns in 127 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u7gA/nostruct-align/1u7gA.t04-thin90.a2m.gz # 1u7gA.t04-thin90.a2m with 419 sequences, total weight= 60.1073 avg weight= 0.143454 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3005 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u7gA/info/1u7gA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1u7gA/nostruct-align/1u7gA.t04-thin90.a2m.gz, have 28000 columns in 128 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j2lA/nostruct-align/1j2lA.t04-thin90.a2m.gz # 1j2lA.t04-thin90.a2m with 173 sequences, total weight= 9.94955 avg weight= 0.0575118 40 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j2lA/info/1j2lA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j2lA/nostruct-align/1j2lA.t04-thin90.a2m.gz, have 28068 columns in 129 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kaeA/nostruct-align/1kaeA.t04-thin90.a2m.gz # 1kaeA.t04-thin90.a2m with 161 sequences, total weight= 16.1564 avg weight= 0.10035 41 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kaeA/info/1kaeA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kaeA/nostruct-align/1kaeA.t04-thin90.a2m.gz, have 28502 columns in 130 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dfmA/nostruct-align/1dfmA.t04-thin90.a2m.gz # 1dfmA.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00027 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dfmA/info/1dfmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dfmA/nostruct-align/1dfmA.t04-thin90.a2m.gz, have 28725 columns in 131 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k55A/nostruct-align/1k55A.t04-thin90.a2m.gz # 1k55A.t04-thin90.a2m with 947 sequences, total weight= 947 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09901 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k55A/info/1k55A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k55A/nostruct-align/1k55A.t04-thin90.a2m.gz, have 28970 columns in 132 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uk8A/nostruct-align/1uk8A.t04-thin90.a2m.gz # 1uk8A.t04-thin90.a2m with 2345 sequences, total weight= 2345 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.846117 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uk8A/info/1uk8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uk8A/nostruct-align/1uk8A.t04-thin90.a2m.gz, have 29241 columns in 133 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hz6A/nostruct-align/1hz6A.t04-thin90.a2m.gz # 1hz6A.t04-thin90.a2m with 9 sequences, total weight= 3.21774 avg weight= 0.357526 11 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hz6A/info/1hz6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hz6A/nostruct-align/1hz6A.t04-thin90.a2m.gz, have 29308 columns in 134 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1inlA/nostruct-align/1inlA.t04-thin90.a2m.gz # 1inlA.t04-thin90.a2m with 2389 sequences, total weight= 2389 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.787538 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1inlA/info/1inlA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1inlA/nostruct-align/1inlA.t04-thin90.a2m.gz, have 29593 columns in 135 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uv7A/nostruct-align/1uv7A.t04-thin90.a2m.gz # 1uv7A.t04-thin90.a2m with 14 sequences, total weight= 7.80233 avg weight= 0.55731 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uv7A/info/1uv7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uv7A/nostruct-align/1uv7A.t04-thin90.a2m.gz, have 29669 columns in 136 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bo9B/nostruct-align/2bo9B.t04-thin90.a2m.gz # 2bo9B.t04-thin90.a2m with 15 sequences, total weight= 7.34036 avg weight= 0.489358 19 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bo9B/info/2bo9B.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2b/2bo9B/nostruct-align/2bo9B.t04-thin90.a2m.gz, have 29886 columns in 137 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cxqA/nostruct-align/1cxqA.t04-thin90.a2m.gz # 1cxqA.t04-thin90.a2m with 646 sequences, total weight= 646 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24049 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cxqA/info/1cxqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1cxqA/nostruct-align/1cxqA.t04-thin90.a2m.gz, have 30029 columns in 138 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bs0A/nostruct-align/1bs0A.t04-thin90.a2m.gz # 1bs0A.t04-thin90.a2m with 2158 sequences, total weight= 2158 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07649 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bs0A/info/1bs0A.stride-mixed.near-backbone-11 WARNING: skipping e, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1b/1bs0A/nostruct-align/1bs0A.t04-thin90.a2m.gz, have 30411 columns in 139 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pfbA/nostruct-align/1pfbA.t04-thin90.a2m.gz # 1pfbA.t04-thin90.a2m with 113 sequences, total weight= 21.8091 avg weight= 0.193001 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pfbA/info/1pfbA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pfbA/nostruct-align/1pfbA.t04-thin90.a2m.gz, have 30466 columns in 140 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3s/3sil/nostruct-align/3sil.t04-thin90.a2m.gz # 3sil.t04-thin90.a2m with 320 sequences, total weight= 320 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.842284 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3s/3sil/info/3sil.stride-mixed.near-backbone-11 WARNING: skipping b, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/3s/3sil/nostruct-align/3sil.t04-thin90.a2m.gz, have 30844 columns in 141 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhwA/nostruct-align/1vhwA.t04-thin90.a2m.gz # 1vhwA.t04-thin90.a2m with 564 sequences, total weight= 564 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.995828 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhwA/info/1vhwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vhwA/nostruct-align/1vhwA.t04-thin90.a2m.gz, have 31081 columns in 142 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xsvA/nostruct-align/1xsvA.t04-thin90.a2m.gz # 1xsvA.t04-thin90.a2m with 38 sequences, total weight= 11.7335 avg weight= 0.308776 33 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xsvA/info/1xsvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xsvA/nostruct-align/1xsvA.t04-thin90.a2m.gz, have 31187 columns in 143 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xqaA/nostruct-align/1xqaA.t04-thin90.a2m.gz # 1xqaA.t04-thin90.a2m with 1883 sequences, total weight= 1883 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.920512 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xqaA/info/1xqaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xqaA/nostruct-align/1xqaA.t04-thin90.a2m.gz, have 31299 columns in 144 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ut1A/nostruct-align/1ut1A.t04-thin90.a2m.gz # 1ut1A.t04-thin90.a2m with 8 sequences, total weight= 5.30263 avg weight= 0.662828 16 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ut1A/info/1ut1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ut1A/nostruct-align/1ut1A.t04-thin90.a2m.gz, have 31439 columns in 145 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mr7A/nostruct-align/1mr7A.t04-thin90.a2m.gz # 1mr7A.t04-thin90.a2m with 1350 sequences, total weight= 1350 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.990222 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mr7A/info/1mr7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mr7A/nostruct-align/1mr7A.t04-thin90.a2m.gz, have 31642 columns in 146 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xkpA/nostruct-align/1xkpA.t04-thin90.a2m.gz # 1xkpA.t04-thin90.a2m with 28 sequences, total weight= 28 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27902 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xkpA/info/1xkpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xkpA/nostruct-align/1xkpA.t04-thin90.a2m.gz, have 31873 columns in 147 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r89A/nostruct-align/1r89A.t04-thin90.a2m.gz # 1r89A.t04-thin90.a2m with 233 sequences, total weight= 233 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.969984 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r89A/info/1r89A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r89A/nostruct-align/1r89A.t04-thin90.a2m.gz, have 32310 columns in 148 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gv9A/nostruct-align/1gv9A.t04-thin90.a2m.gz # 1gv9A.t04-thin90.a2m with 311 sequences, total weight= 311 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27441 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gv9A/info/1gv9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gv9A/nostruct-align/1gv9A.t04-thin90.a2m.gz, have 32533 columns in 149 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1koe/nostruct-align/1koe.t04-thin90.a2m.gz # 1koe.t04-thin90.a2m with 29 sequences, total weight= 17.4512 avg weight= 0.601764 28 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1koe/info/1koe.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1koe/nostruct-align/1koe.t04-thin90.a2m.gz, have 32705 columns in 150 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mfgA/nostruct-align/1mfgA.t04-thin90.a2m.gz # 1mfgA.t04-thin90.a2m with 948 sequences, total weight= 948 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20197 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mfgA/info/1mfgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mfgA/nostruct-align/1mfgA.t04-thin90.a2m.gz, have 32800 columns in 151 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wmhA/nostruct-align/1wmhA.t04-thin90.a2m.gz # 1wmhA.t04-thin90.a2m with 12 sequences, total weight= 5.35075 avg weight= 0.445896 18 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wmhA/info/1wmhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wmhA/nostruct-align/1wmhA.t04-thin90.a2m.gz, have 32883 columns in 152 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pv5A/nostruct-align/1pv5A.t04-thin90.a2m.gz # 1pv5A.t04-thin90.a2m with 24 sequences, total weight= 24 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27995 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pv5A/info/1pv5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pv5A/nostruct-align/1pv5A.t04-thin90.a2m.gz, have 33144 columns in 153 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1psrA/nostruct-align/1psrA.t04-thin90.a2m.gz # 1psrA.t04-thin90.a2m with 106 sequences, total weight= 32.7059 avg weight= 0.308546 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1psrA/info/1psrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1psrA/nostruct-align/1psrA.t04-thin90.a2m.gz, have 33244 columns in 154 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vj2A/nostruct-align/1vj2A.t04-thin90.a2m.gz # 1vj2A.t04-thin90.a2m with 1315 sequences, total weight= 1315 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.776597 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vj2A/info/1vj2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vj2A/nostruct-align/1vj2A.t04-thin90.a2m.gz, have 33358 columns in 155 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tjyA/nostruct-align/1tjyA.t04-thin90.a2m.gz # 1tjyA.t04-thin90.a2m with 1558 sequences, total weight= 1558 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.967593 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tjyA/info/1tjyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tjyA/nostruct-align/1tjyA.t04-thin90.a2m.gz, have 33674 columns in 156 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1smoA/nostruct-align/1smoA.t04-thin90.a2m.gz # 1smoA.t04-thin90.a2m with 1747 sequences, total weight= 9.07749 avg weight= 0.00519605 31 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1smoA/info/1smoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1smoA/nostruct-align/1smoA.t04-thin90.a2m.gz, have 33787 columns in 157 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kzfA/nostruct-align/1kzfA.t04-thin90.a2m.gz # 1kzfA.t04-thin90.a2m with 109 sequences, total weight= 109 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12699 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kzfA/info/1kzfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kzfA/nostruct-align/1kzfA.t04-thin90.a2m.gz, have 33985 columns in 158 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nr0A/nostruct-align/1nr0A.t04-thin90.a2m.gz # 1nr0A.t04-thin90.a2m with 1837 sequences, total weight= 1837 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.896795 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nr0A/info/1nr0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nr0A/nostruct-align/1nr0A.t04-thin90.a2m.gz, have 34595 columns in 159 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vyrA/nostruct-align/1vyrA.t04-thin90.a2m.gz # 1vyrA.t04-thin90.a2m with 573 sequences, total weight= 284.033 avg weight= 0.495694 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30737 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vyrA/info/1vyrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vyrA/nostruct-align/1vyrA.t04-thin90.a2m.gz, have 34958 columns in 160 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nlnA/nostruct-align/1nlnA.t04-thin90.a2m.gz # 1nlnA.t04-thin90.a2m with 27 sequences, total weight= 5.20789 avg weight= 0.192885 22 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nlnA/info/1nlnA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nlnA/nostruct-align/1nlnA.t04-thin90.a2m.gz, have 35161 columns in 161 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hdhA/nostruct-align/1hdhA.t04-thin90.a2m.gz # 1hdhA.t04-thin90.a2m with 980 sequences, total weight= 980 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.857543 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hdhA/info/1hdhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hdhA/nostruct-align/1hdhA.t04-thin90.a2m.gz, have 35686 columns in 162 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vp6A/nostruct-align/1vp6A.t04-thin90.a2m.gz # 1vp6A.t04-thin90.a2m with 1422 sequences, total weight= 1422 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.926591 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vp6A/info/1vp6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vp6A/nostruct-align/1vp6A.t04-thin90.a2m.gz, have 35819 columns in 163 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eb6A/nostruct-align/1eb6A.t04-thin90.a2m.gz # 1eb6A.t04-thin90.a2m with 40 sequences, total weight= 34.7215 avg weight= 0.868038 37 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eb6A/info/1eb6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1eb6A/nostruct-align/1eb6A.t04-thin90.a2m.gz, have 35996 columns in 164 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v5vA/nostruct-align/1v5vA.t04-thin90.a2m.gz # 1v5vA.t04-thin90.a2m with 433 sequences, total weight= 433 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.21599 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v5vA/info/1v5vA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v5vA/nostruct-align/1v5vA.t04-thin90.a2m.gz, have 36395 columns in 165 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yo3A/nostruct-align/1yo3A.t04-thin90.a2m.gz # 1yo3A.t04-thin90.a2m with 95 sequences, total weight= 31.1047 avg weight= 0.327418 44 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yo3A/info/1yo3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1yo3A/nostruct-align/1yo3A.t04-thin90.a2m.gz, have 36480 columns in 166 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r9dA/nostruct-align/1r9dA.t04-thin90.a2m.gz # 1r9dA.t04-thin90.a2m with 98 sequences, total weight= 48.5117 avg weight= 0.495017 43 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r9dA/info/1r9dA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r9dA/nostruct-align/1r9dA.t04-thin90.a2m.gz, have 37266 columns in 167 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gk9B/nostruct-align/1gk9B.t04-thin90.a2m.gz # 1gk9B.t04-thin90.a2m with 92 sequences, total weight= 92 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23664 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gk9B/info/1gk9B.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gk9B/nostruct-align/1gk9B.t04-thin90.a2m.gz, have 37823 columns in 168 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x91A/nostruct-align/1x91A.t04-thin90.a2m.gz # 1x91A.t04-thin90.a2m with 225 sequences, total weight= 225 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00061 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x91A/info/1x91A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1x91A/nostruct-align/1x91A.t04-thin90.a2m.gz, have 37972 columns in 169 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l9lA/nostruct-align/1l9lA.t04-thin90.a2m.gz # 1l9lA.t04-thin90.a2m with 6 sequences, total weight= 3.70245 avg weight= 0.617076 14 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l9lA/info/1l9lA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1l9lA/nostruct-align/1l9lA.t04-thin90.a2m.gz, have 38046 columns in 170 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vlpA/nostruct-align/1vlpA.t04-thin90.a2m.gz # 1vlpA.t04-thin90.a2m with 205 sequences, total weight= 114.561 avg weight= 0.558832 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30056 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vlpA/info/1vlpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vlpA/nostruct-align/1vlpA.t04-thin90.a2m.gz, have 38464 columns in 171 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vjuA/nostruct-align/1vjuA.t04-thin90.a2m.gz # 1vjuA.t04-thin90.a2m with 95 sequences, total weight= 6.97796 avg weight= 0.0734523 30 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vjuA/info/1vjuA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vjuA/nostruct-align/1vjuA.t04-thin90.a2m.gz, have 38755 columns in 172 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ogwA/nostruct-align/1ogwA.t04-thin90.a2m.gz # 1ogwA.t04-thin90.a2m with 338 sequences, total weight= 142.507 avg weight= 0.421618 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30464 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ogwA/info/1ogwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ogwA/nostruct-align/1ogwA.t04-thin90.a2m.gz, have 38831 columns in 173 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r1tA/nostruct-align/1r1tA.t04-thin90.a2m.gz # 1r1tA.t04-thin90.a2m with 839 sequences, total weight= 839 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0889 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r1tA/info/1r1tA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r1tA/nostruct-align/1r1tA.t04-thin90.a2m.gz, have 38929 columns in 174 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h03P/nostruct-align/1h03P.t04-thin90.a2m.gz # 1h03P.t04-thin90.a2m with 920 sequences, total weight= 920 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12507 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h03P/info/1h03P.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h03P/nostruct-align/1h03P.t04-thin90.a2m.gz, have 39054 columns in 175 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w4xA/nostruct-align/1w4xA.t04-thin90.a2m.gz # 1w4xA.t04-thin90.a2m with 2089 sequences, total weight= 2089 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02263 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w4xA/info/1w4xA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w4xA/nostruct-align/1w4xA.t04-thin90.a2m.gz, have 39587 columns in 176 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vjpA/nostruct-align/1vjpA.t04-thin90.a2m.gz # 1vjpA.t04-thin90.a2m with 74 sequences, total weight= 23.082 avg weight= 0.311919 34 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vjpA/info/1vjpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vjpA/nostruct-align/1vjpA.t04-thin90.a2m.gz, have 39969 columns in 177 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h6lA/nostruct-align/1h6lA.t04-thin90.a2m.gz # 1h6lA.t04-thin90.a2m with 27 sequences, total weight= 20.2707 avg weight= 0.750768 28 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h6lA/info/1h6lA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h6lA/nostruct-align/1h6lA.t04-thin90.a2m.gz, have 40322 columns in 178 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oywA/nostruct-align/1oywA.t04-thin90.a2m.gz # 1oywA.t04-thin90.a2m with 2024 sequences, total weight= 2024 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06359 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oywA/info/1oywA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oywA/nostruct-align/1oywA.t04-thin90.a2m.gz, have 40838 columns in 179 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fp2A/nostruct-align/1fp2A.t04-thin90.a2m.gz # 1fp2A.t04-thin90.a2m with 2447 sequences, total weight= 2447 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.774629 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fp2A/info/1fp2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fp2A/nostruct-align/1fp2A.t04-thin90.a2m.gz, have 41183 columns in 180 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v9fA/nostruct-align/1v9fA.t04-thin90.a2m.gz # 1v9fA.t04-thin90.a2m with 768 sequences, total weight= 768 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17862 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v9fA/info/1v9fA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v9fA/nostruct-align/1v9fA.t04-thin90.a2m.gz, have 41433 columns in 181 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qwgA/nostruct-align/1qwgA.t04-thin90.a2m.gz # 1qwgA.t04-thin90.a2m with 17 sequences, total weight= 11.4766 avg weight= 0.675096 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qwgA/info/1qwgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qwgA/nostruct-align/1qwgA.t04-thin90.a2m.gz, have 41684 columns in 182 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f7lA/nostruct-align/1f7lA.t04-thin90.a2m.gz # 1f7lA.t04-thin90.a2m with 238 sequences, total weight= 238 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16395 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f7lA/info/1f7lA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f7lA/nostruct-align/1f7lA.t04-thin90.a2m.gz, have 41802 columns in 183 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nbcA/nostruct-align/1nbcA.t04-thin90.a2m.gz # 1nbcA.t04-thin90.a2m with 69 sequences, total weight= 44.2397 avg weight= 0.641155 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nbcA/info/1nbcA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nbcA/nostruct-align/1nbcA.t04-thin90.a2m.gz, have 41957 columns in 184 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1my7A/nostruct-align/1my7A.t04-thin90.a2m.gz # 1my7A.t04-thin90.a2m with 35 sequences, total weight= 12.7891 avg weight= 0.365404 30 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1my7A/info/1my7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1my7A/nostruct-align/1my7A.t04-thin90.a2m.gz, have 42064 columns in 185 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xu9A/nostruct-align/1xu9A.t04-thin90.a2m.gz # 1xu9A.t04-thin90.a2m with 2361 sequences, total weight= 133.146 avg weight= 0.0563939 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32143 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xu9A/info/1xu9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xu9A/nostruct-align/1xu9A.t04-thin90.a2m.gz, have 42333 columns in 186 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t6t1/nostruct-align/1t6t1.t04-thin90.a2m.gz # 1t6t1.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.5933 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t6t1/info/1t6t1.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t6t1/nostruct-align/1t6t1.t04-thin90.a2m.gz, have 42441 columns in 187 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ek6A/nostruct-align/1ek6A.t04-thin90.a2m.gz # 1ek6A.t04-thin90.a2m with 2138 sequences, total weight= 2138 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08763 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ek6A/info/1ek6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1ek6A/nostruct-align/1ek6A.t04-thin90.a2m.gz, have 42787 columns in 188 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ey4A/nostruct-align/1ey4A.t04-thin90.a2m.gz # 1ey4A.t04-thin90.a2m with 275 sequences, total weight= 275 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14466 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ey4A/info/1ey4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1ey4A/nostruct-align/1ey4A.t04-thin90.a2m.gz, have 42923 columns in 189 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gvzA/nostruct-align/1gvzA.t04-thin90.a2m.gz # 1gvzA.t04-thin90.a2m with 1723 sequences, total weight= 943.185 avg weight= 0.547409 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31564 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gvzA/info/1gvzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gvzA/nostruct-align/1gvzA.t04-thin90.a2m.gz, have 43160 columns in 190 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gz8A/nostruct-align/1gz8A.t04-thin90.a2m.gz # 1gz8A.t04-thin90.a2m with 1158 sequences, total weight= 65.5212 avg weight= 0.0565813 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30734 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gz8A/info/1gz8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gz8A/nostruct-align/1gz8A.t04-thin90.a2m.gz, have 43451 columns in 191 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1ynbA/nostruct-align/1ynbA.t04-thin90.a2m.gz # 1ynbA.t04-thin90.a2m with 145 sequences, total weight= 145 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17864 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1ynbA/info/1ynbA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1ynbA/nostruct-align/1ynbA.t04-thin90.a2m.gz, have 43618 columns in 192 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nytA/nostruct-align/1nytA.t04-thin90.a2m.gz # 1nytA.t04-thin90.a2m with 610 sequences, total weight= 610 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13571 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nytA/info/1nytA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nytA/nostruct-align/1nytA.t04-thin90.a2m.gz, have 43889 columns in 193 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1evlA/nostruct-align/1evlA.t04-thin90.a2m.gz # 1evlA.t04-thin90.a2m with 1269 sequences, total weight= 1269 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08745 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1evlA/info/1evlA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1evlA/nostruct-align/1evlA.t04-thin90.a2m.gz, have 44290 columns in 194 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hyoA/nostruct-align/1hyoA.t04-thin90.a2m.gz # 1hyoA.t04-thin90.a2m with 399 sequences, total weight= 220.579 avg weight= 0.552829 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30143 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hyoA/info/1hyoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hyoA/nostruct-align/1hyoA.t04-thin90.a2m.gz, have 44706 columns in 195 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mh1/nostruct-align/1mh1.t04-thin90.a2m.gz # 1mh1.t04-thin90.a2m with 1290 sequences, total weight= 1290 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20841 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mh1/info/1mh1.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mh1/nostruct-align/1mh1.t04-thin90.a2m.gz, have 44889 columns in 196 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qw9A/nostruct-align/1qw9A.t04-thin90.a2m.gz # 1qw9A.t04-thin90.a2m with 176 sequences, total weight= 176 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.923544 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qw9A/info/1qw9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qw9A/nostruct-align/1qw9A.t04-thin90.a2m.gz, have 45386 columns in 197 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gtkA/nostruct-align/1gtkA.t04-thin90.a2m.gz # 1gtkA.t04-thin90.a2m with 164 sequences, total weight= 19.2021 avg weight= 0.117086 45 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gtkA/info/1gtkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gtkA/nostruct-align/1gtkA.t04-thin90.a2m.gz, have 45680 columns in 198 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hbnA/nostruct-align/1hbnA.t04-thin90.a2m.gz # 1hbnA.t04-thin90.a2m with 33 sequences, total weight= 4.61379 avg weight= 0.139812 13 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hbnA/info/1hbnA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hbnA/nostruct-align/1hbnA.t04-thin90.a2m.gz, have 46227 columns in 199 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kqpA/nostruct-align/1kqpA.t04-thin90.a2m.gz # 1kqpA.t04-thin90.a2m with 1429 sequences, total weight= 1429 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.883025 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kqpA/info/1kqpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kqpA/nostruct-align/1kqpA.t04-thin90.a2m.gz, have 46498 columns in 200 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mb3A/nostruct-align/1mb3A.t04-thin90.a2m.gz # 1mb3A.t04-thin90.a2m with 2432 sequences, total weight= 103.546 avg weight= 0.0425764 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32808 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mb3A/info/1mb3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mb3A/nostruct-align/1mb3A.t04-thin90.a2m.gz, have 46615 columns in 201 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vqqA/nostruct-align/1vqqA.t04-thin90.a2m.gz # 1vqqA.t04-thin90.a2m with 1137 sequences, total weight= 1137 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13791 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vqqA/info/1vqqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vqqA/nostruct-align/1vqqA.t04-thin90.a2m.gz, have 47250 columns in 202 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p1jA/nostruct-align/1p1jA.t04-thin90.a2m.gz # 1p1jA.t04-thin90.a2m with 65 sequences, total weight= 24.6339 avg weight= 0.378984 31 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p1jA/info/1p1jA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p1jA/nostruct-align/1p1jA.t04-thin90.a2m.gz, have 47775 columns in 203 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/4u/4ubpB/nostruct-align/4ubpB.t04-thin90.a2m.gz # 4ubpB.t04-thin90.a2m with 97 sequences, total weight= 7.12457 avg weight= 0.0734492 32 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/4u/4ubpB/info/4ubpB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/4u/4ubpB/nostruct-align/4ubpB.t04-thin90.a2m.gz, have 47897 columns in 204 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhtA/nostruct-align/1vhtA.t04-thin90.a2m.gz # 1vhtA.t04-thin90.a2m with 2039 sequences, total weight= 2039 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.830622 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhtA/info/1vhtA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vhtA/nostruct-align/1vhtA.t04-thin90.a2m.gz, have 48105 columns in 205 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nrzA/nostruct-align/1nrzA.t04-thin90.a2m.gz # 1nrzA.t04-thin90.a2m with 93 sequences, total weight= 24.4293 avg weight= 0.262681 43 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nrzA/info/1nrzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nrzA/nostruct-align/1nrzA.t04-thin90.a2m.gz, have 48268 columns in 206 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kfcA/nostruct-align/1kfcA.t04-thin90.a2m.gz # 1kfcA.t04-thin90.a2m with 594 sequences, total weight= 594 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07383 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kfcA/info/1kfcA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kfcA/nostruct-align/1kfcA.t04-thin90.a2m.gz, have 48522 columns in 207 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1ve2A/nostruct-align/1ve2A.t04-thin90.a2m.gz # 1ve2A.t04-thin90.a2m with 957 sequences, total weight= 957 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.177 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1ve2A/info/1ve2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1ve2A/nostruct-align/1ve2A.t04-thin90.a2m.gz, have 48744 columns in 208 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hw1A/nostruct-align/1hw1A.t04-thin90.a2m.gz # 1hw1A.t04-thin90.a2m with 1756 sequences, total weight= 1756 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.866943 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hw1A/info/1hw1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hw1A/nostruct-align/1hw1A.t04-thin90.a2m.gz, have 48970 columns in 209 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k4iA/nostruct-align/1k4iA.t04-thin90.a2m.gz # 1k4iA.t04-thin90.a2m with 177 sequences, total weight= 12.9949 avg weight= 0.0734177 36 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k4iA/info/1k4iA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k4iA/nostruct-align/1k4iA.t04-thin90.a2m.gz, have 49186 columns in 210 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w0hA/nostruct-align/1w0hA.t04-thin90.a2m.gz # 1w0hA.t04-thin90.a2m with 825 sequences, total weight= 825 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.984691 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w0hA/info/1w0hA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w0hA/nostruct-align/1w0hA.t04-thin90.a2m.gz, have 49386 columns in 211 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n0qA/nostruct-align/1n0qA.t04-thin90.a2m.gz # 1n0qA.t04-thin90.a2m with 3885 sequences, total weight= 3885 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19398 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n0qA/info/1n0qA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n0qA/nostruct-align/1n0qA.t04-thin90.a2m.gz, have 49477 columns in 212 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1utg/nostruct-align/1utg.t04-thin90.a2m.gz # 1utg.t04-thin90.a2m with 10 sequences, total weight= 3.61473 avg weight= 0.361473 15 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1utg/info/1utg.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1utg/nostruct-align/1utg.t04-thin90.a2m.gz, have 49547 columns in 213 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jm1A/nostruct-align/1jm1A.t04-thin90.a2m.gz # 1jm1A.t04-thin90.a2m with 577 sequences, total weight= 577 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.997885 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jm1A/info/1jm1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jm1A/nostruct-align/1jm1A.t04-thin90.a2m.gz, have 49749 columns in 214 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fna/nostruct-align/1fna.t04-thin90.a2m.gz # 1fna.t04-thin90.a2m with 2083 sequences, total weight= 2083 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03017 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fna/info/1fna.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fna/nostruct-align/1fna.t04-thin90.a2m.gz, have 49840 columns in 215 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k7cA/nostruct-align/1k7cA.t04-thin90.a2m.gz # 1k7cA.t04-thin90.a2m with 558 sequences, total weight= 558 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.827173 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k7cA/info/1k7cA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k7cA/nostruct-align/1k7cA.t04-thin90.a2m.gz, have 50073 columns in 216 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t8kA/nostruct-align/1t8kA.t04-thin90.a2m.gz # 1t8kA.t04-thin90.a2m with 285 sequences, total weight= 34.2033 avg weight= 0.120012 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t8kA/info/1t8kA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t8kA/nostruct-align/1t8kA.t04-thin90.a2m.gz, have 50150 columns in 217 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1ml4A/nostruct-align/1ml4A.t04-thin90.a2m.gz # 1ml4A.t04-thin90.a2m with 388 sequences, total weight= 38.6989 avg weight= 0.0997394 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1ml4A/info/1ml4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1ml4A/nostruct-align/1ml4A.t04-thin90.a2m.gz, have 50457 columns in 218 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ucsA/nostruct-align/1ucsA.t04-thin90.a2m.gz # 1ucsA.t04-thin90.a2m with 9 sequences, total weight= 2.9458 avg weight= 0.327311 10 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ucsA/info/1ucsA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ucsA/nostruct-align/1ucsA.t04-thin90.a2m.gz, have 50521 columns in 219 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eg2A/nostruct-align/1eg2A.t04-thin90.a2m.gz # 1eg2A.t04-thin90.a2m with 386 sequences, total weight= 386 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.939942 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eg2A/info/1eg2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1eg2A/nostruct-align/1eg2A.t04-thin90.a2m.gz, have 50791 columns in 220 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1ymkA/nostruct-align/1ymkA.t04-thin90.a2m.gz # 1ymkA.t04-thin90.a2m with 1681 sequences, total weight= 1681 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.895055 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1ymkA/info/1ymkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1ymkA/nostruct-align/1ymkA.t04-thin90.a2m.gz, have 50962 columns in 221 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sdiA/nostruct-align/1sdiA.t04-thin90.a2m.gz # 1sdiA.t04-thin90.a2m with 28 sequences, total weight= 9.45875 avg weight= 0.337813 27 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sdiA/info/1sdiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sdiA/nostruct-align/1sdiA.t04-thin90.a2m.gz, have 51175 columns in 222 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n40A/nostruct-align/1n40A.t04-thin90.a2m.gz # 1n40A.t04-thin90.a2m with 1897 sequences, total weight= 1897 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14732 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n40A/info/1n40A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n40A/nostruct-align/1n40A.t04-thin90.a2m.gz, have 51569 columns in 223 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e58A/nostruct-align/1e58A.t04-thin90.a2m.gz # 1e58A.t04-thin90.a2m with 835 sequences, total weight= 835 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.991614 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e58A/info/1e58A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e58A/nostruct-align/1e58A.t04-thin90.a2m.gz, have 51816 columns in 224 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kq3A/nostruct-align/1kq3A.t04-thin90.a2m.gz # 1kq3A.t04-thin90.a2m with 608 sequences, total weight= 608 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13274 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kq3A/info/1kq3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kq3A/nostruct-align/1kq3A.t04-thin90.a2m.gz, have 52180 columns in 225 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nvmA/nostruct-align/1nvmA.t04-thin90.a2m.gz # 1nvmA.t04-thin90.a2m with 531 sequences, total weight= 503.76 avg weight= 0.948701 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30093 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nvmA/info/1nvmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nvmA/nostruct-align/1nvmA.t04-thin90.a2m.gz, have 52520 columns in 226 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kugA/nostruct-align/1kugA.t04-thin90.a2m.gz # 1kugA.t04-thin90.a2m with 362 sequences, total weight= 362 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17121 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kugA/info/1kugA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kugA/nostruct-align/1kugA.t04-thin90.a2m.gz, have 52721 columns in 227 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wubA/nostruct-align/1wubA.t04-thin90.a2m.gz # 1wubA.t04-thin90.a2m with 178 sequences, total weight= 122.529 avg weight= 0.688367 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3013 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wubA/info/1wubA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wubA/nostruct-align/1wubA.t04-thin90.a2m.gz, have 52897 columns in 228 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1umgA/nostruct-align/1umgA.t04-thin90.a2m.gz # 1umgA.t04-thin90.a2m with 21 sequences, total weight= 3.74235 avg weight= 0.178207 18 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1umgA/info/1umgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1umgA/nostruct-align/1umgA.t04-thin90.a2m.gz, have 53256 columns in 229 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gkpA/nostruct-align/1gkpA.t04-thin90.a2m.gz # 1gkpA.t04-thin90.a2m with 1316 sequences, total weight= 1316 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.882228 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gkpA/info/1gkpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gkpA/nostruct-align/1gkpA.t04-thin90.a2m.gz, have 53714 columns in 230 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lwbA/nostruct-align/1lwbA.t04-thin90.a2m.gz # 1lwbA.t04-thin90.a2m with 13 sequences, total weight= 5.66616 avg weight= 0.435859 22 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lwbA/info/1lwbA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lwbA/nostruct-align/1lwbA.t04-thin90.a2m.gz, have 53836 columns in 231 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w6sA/nostruct-align/1w6sA.t04-thin90.a2m.gz # 1w6sA.t04-thin90.a2m with 1380 sequences, total weight= 1380 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.906587 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w6sA/info/1w6sA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w6sA/nostruct-align/1w6sA.t04-thin90.a2m.gz, have 54431 columns in 232 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gnlA/nostruct-align/1gnlA.t04-thin90.a2m.gz # 1gnlA.t04-thin90.a2m with 85 sequences, total weight= 46.6975 avg weight= 0.549383 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gnlA/info/1gnlA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gnlA/nostruct-align/1gnlA.t04-thin90.a2m.gz, have 54974 columns in 233 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nls/nostruct-align/1nls.t04-thin90.a2m.gz # 1nls.t04-thin90.a2m with 449 sequences, total weight= 158.454 avg weight= 0.352904 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30235 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nls/info/1nls.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nls/nostruct-align/1nls.t04-thin90.a2m.gz, have 55211 columns in 234 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wr8A/nostruct-align/1wr8A.t04-thin90.a2m.gz # 1wr8A.t04-thin90.a2m with 1992 sequences, total weight= 1992 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08287 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wr8A/info/1wr8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wr8A/nostruct-align/1wr8A.t04-thin90.a2m.gz, have 55441 columns in 235 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mtzA/nostruct-align/1mtzA.t04-thin90.a2m.gz # 1mtzA.t04-thin90.a2m with 2339 sequences, total weight= 2339 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.784828 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mtzA/info/1mtzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mtzA/nostruct-align/1mtzA.t04-thin90.a2m.gz, have 55731 columns in 236 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gu2A/nostruct-align/1gu2A.t04-thin90.a2m.gz # 1gu2A.t04-thin90.a2m with 10 sequences, total weight= 7.5879 avg weight= 0.75879 18 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gu2A/info/1gu2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gu2A/nostruct-align/1gu2A.t04-thin90.a2m.gz, have 55855 columns in 237 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2m/2mhr/nostruct-align/2mhr.t04-thin90.a2m.gz # 2mhr.t04-thin90.a2m with 117 sequences, total weight= 117 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25483 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2m/2mhr/info/2mhr.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2m/2mhr/nostruct-align/2mhr.t04-thin90.a2m.gz, have 55973 columns in 238 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yn9A/nostruct-align/1yn9A.t04-thin90.a2m.gz # 1yn9A.t04-thin90.a2m with 1470 sequences, total weight= 1470 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.942205 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yn9A/info/1yn9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1yn9A/nostruct-align/1yn9A.t04-thin90.a2m.gz, have 56141 columns in 239 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wl4A/nostruct-align/1wl4A.t04-thin90.a2m.gz # 1wl4A.t04-thin90.a2m with 2495 sequences, total weight= 2495 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19741 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wl4A/info/1wl4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wl4A/nostruct-align/1wl4A.t04-thin90.a2m.gz, have 56535 columns in 240 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uxaA/nostruct-align/1uxaA.t04-thin90.a2m.gz # 1uxaA.t04-thin90.a2m with 36 sequences, total weight= 16.1652 avg weight= 0.449034 31 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uxaA/info/1uxaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uxaA/nostruct-align/1uxaA.t04-thin90.a2m.gz, have 56720 columns in 241 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xrkA/nostruct-align/1xrkA.t04-thin90.a2m.gz # 1xrkA.t04-thin90.a2m with 1892 sequences, total weight= 1892 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.873187 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xrkA/info/1xrkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xrkA/nostruct-align/1xrkA.t04-thin90.a2m.gz, have 56840 columns in 242 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dozA/nostruct-align/1dozA.t04-thin90.a2m.gz # 1dozA.t04-thin90.a2m with 169 sequences, total weight= 51.0605 avg weight= 0.302133 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30031 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dozA/info/1dozA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dozA/nostruct-align/1dozA.t04-thin90.a2m.gz, have 57149 columns in 243 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lfpA/nostruct-align/1lfpA.t04-thin90.a2m.gz # 1lfpA.t04-thin90.a2m with 157 sequences, total weight= 21.0483 avg weight= 0.134066 40 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lfpA/info/1lfpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lfpA/nostruct-align/1lfpA.t04-thin90.a2m.gz, have 57392 columns in 244 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xttA/nostruct-align/1xttA.t04-thin90.a2m.gz # 1xttA.t04-thin90.a2m with 422 sequences, total weight= 337.577 avg weight= 0.799946 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30234 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xttA/info/1xttA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xttA/nostruct-align/1xttA.t04-thin90.a2m.gz, have 57607 columns in 245 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yd0A/nostruct-align/1yd0A.t04-thin90.a2m.gz # 1yd0A.t04-thin90.a2m with 235 sequences, total weight= 23.2175 avg weight= 0.0987979 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yd0A/info/1yd0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1yd0A/nostruct-align/1yd0A.t04-thin90.a2m.gz, have 57696 columns in 246 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1syyA/nostruct-align/1syyA.t04-thin90.a2m.gz # 1syyA.t04-thin90.a2m with 260 sequences, total weight= 260 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26147 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1syyA/info/1syyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1syyA/nostruct-align/1syyA.t04-thin90.a2m.gz, have 58013 columns in 247 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hnjA/nostruct-align/1hnjA.t04-thin90.a2m.gz # 1hnjA.t04-thin90.a2m with 2267 sequences, total weight= 2267 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13028 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hnjA/info/1hnjA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hnjA/nostruct-align/1hnjA.t04-thin90.a2m.gz, have 58330 columns in 248 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r7jA/nostruct-align/1r7jA.t04-thin90.a2m.gz # 1r7jA.t04-thin90.a2m with 25 sequences, total weight= 23.3674 avg weight= 0.934697 28 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r7jA/info/1r7jA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r7jA/nostruct-align/1r7jA.t04-thin90.a2m.gz, have 58420 columns in 249 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jfbA/nostruct-align/1jfbA.t04-thin90.a2m.gz # 1jfbA.t04-thin90.a2m with 1855 sequences, total weight= 1855 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14906 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jfbA/info/1jfbA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jfbA/nostruct-align/1jfbA.t04-thin90.a2m.gz, have 58819 columns in 250 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o7iA/nostruct-align/1o7iA.t04-thin90.a2m.gz # 1o7iA.t04-thin90.a2m with 98 sequences, total weight= 98 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22929 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o7iA/info/1o7iA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o7iA/nostruct-align/1o7iA.t04-thin90.a2m.gz, have 58934 columns in 251 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j1yA/nostruct-align/1j1yA.t04-thin90.a2m.gz # 1j1yA.t04-thin90.a2m with 646 sequences, total weight= 646 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.98897 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j1yA/info/1j1yA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j1yA/nostruct-align/1j1yA.t04-thin90.a2m.gz, have 59050 columns in 252 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oz2A/nostruct-align/1oz2A.t04-thin90.a2m.gz # 1oz2A.t04-thin90.a2m with 52 sequences, total weight= 36.918 avg weight= 0.709962 33 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oz2A/info/1oz2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oz2A/nostruct-align/1oz2A.t04-thin90.a2m.gz, have 59374 columns in 253 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f8eA/nostruct-align/1f8eA.t04-thin90.a2m.gz # 1f8eA.t04-thin90.a2m with 22 sequences, total weight= 4.68042 avg weight= 0.212746 19 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f8eA/info/1f8eA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f8eA/nostruct-align/1f8eA.t04-thin90.a2m.gz, have 59762 columns in 254 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xpcA/nostruct-align/1xpcA.t04-thin90.a2m.gz # 1xpcA.t04-thin90.a2m with 962 sequences, total weight= 962 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.867118 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xpcA/info/1xpcA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xpcA/nostruct-align/1xpcA.t04-thin90.a2m.gz, have 60007 columns in 255 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vr8A/nostruct-align/1vr8A.t04-thin90.a2m.gz # 1vr8A.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.595407 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vr8A/info/1vr8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vr8A/nostruct-align/1vr8A.t04-thin90.a2m.gz, have 60142 columns in 256 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kzqA/nostruct-align/1kzqA.t04-thin90.a2m.gz # 1kzqA.t04-thin90.a2m with 31 sequences, total weight= 28.7835 avg weight= 0.928501 30 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kzqA/info/1kzqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kzqA/nostruct-align/1kzqA.t04-thin90.a2m.gz, have 60395 columns in 257 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t9hA/nostruct-align/1t9hA.t04-thin90.a2m.gz # 1t9hA.t04-thin90.a2m with 2238 sequences, total weight= 2238 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.967844 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t9hA/info/1t9hA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t9hA/nostruct-align/1t9hA.t04-thin90.a2m.gz, have 60682 columns in 258 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yxyA/nostruct-align/1yxyA.t04-thin90.a2m.gz # 1yxyA.t04-thin90.a2m with 2002 sequences, total weight= 2002 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.997227 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yxyA/info/1yxyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1yxyA/nostruct-align/1yxyA.t04-thin90.a2m.gz, have 60912 columns in 259 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m1nB/nostruct-align/1m1nB.t04-thin90.a2m.gz # 1m1nB.t04-thin90.a2m with 396 sequences, total weight= 396 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22813 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m1nB/info/1m1nB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m1nB/nostruct-align/1m1nB.t04-thin90.a2m.gz, have 61434 columns in 260 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qw2A/nostruct-align/1qw2A.t04-thin90.a2m.gz # 1qw2A.t04-thin90.a2m with 13 sequences, total weight= 6.40463 avg weight= 0.492664 21 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qw2A/info/1qw2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qw2A/nostruct-align/1qw2A.t04-thin90.a2m.gz, have 61536 columns in 261 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ufoA/nostruct-align/1ufoA.t04-thin90.a2m.gz # 1ufoA.t04-thin90.a2m with 2366 sequences, total weight= 2366 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.86691 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ufoA/info/1ufoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ufoA/nostruct-align/1ufoA.t04-thin90.a2m.gz, have 61774 columns in 262 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vkfA/nostruct-align/1vkfA.t04-thin90.a2m.gz # 1vkfA.t04-thin90.a2m with 23 sequences, total weight= 8.91801 avg weight= 0.38774 29 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vkfA/info/1vkfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vkfA/nostruct-align/1vkfA.t04-thin90.a2m.gz, have 61946 columns in 263 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nszA/nostruct-align/1nszA.t04-thin90.a2m.gz # 1nszA.t04-thin90.a2m with 280 sequences, total weight= 280 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14092 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nszA/info/1nszA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nszA/nostruct-align/1nszA.t04-thin90.a2m.gz, have 62286 columns in 264 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dd9A/nostruct-align/1dd9A.t04-thin90.a2m.gz # 1dd9A.t04-thin90.a2m with 309 sequences, total weight= 309 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02868 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dd9A/info/1dd9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dd9A/nostruct-align/1dd9A.t04-thin90.a2m.gz, have 62596 columns in 265 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iuaA/nostruct-align/1iuaA.t04-thin90.a2m.gz # 1iuaA.t04-thin90.a2m with 31 sequences, total weight= 13.9618 avg weight= 0.45038 27 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iuaA/info/1iuaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iuaA/nostruct-align/1iuaA.t04-thin90.a2m.gz, have 62679 columns in 266 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lqtA/nostruct-align/1lqtA.t04-thin90.a2m.gz # 1lqtA.t04-thin90.a2m with 2181 sequences, total weight= 2181 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.911331 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lqtA/info/1lqtA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lqtA/nostruct-align/1lqtA.t04-thin90.a2m.gz, have 63131 columns in 267 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mml/nostruct-align/1mml.t04-thin90.a2m.gz # 1mml.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.867811 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mml/info/1mml.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mml/nostruct-align/1mml.t04-thin90.a2m.gz, have 63382 columns in 268 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y93A/nostruct-align/1y93A.t04-thin90.a2m.gz # 1y93A.t04-thin90.a2m with 569 sequences, total weight= 569 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05994 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y93A/info/1y93A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1y93A/nostruct-align/1y93A.t04-thin90.a2m.gz, have 63540 columns in 269 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i2kA/nostruct-align/1i2kA.t04-thin90.a2m.gz # 1i2kA.t04-thin90.a2m with 398 sequences, total weight= 398 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20496 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i2kA/info/1i2kA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i2kA/nostruct-align/1i2kA.t04-thin90.a2m.gz, have 63809 columns in 270 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x6zA/nostruct-align/1x6zA.t04-thin90.a2m.gz # 1x6zA.t04-thin90.a2m with 172 sequences, total weight= 55.8984 avg weight= 0.324991 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x6zA/info/1x6zA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1x6zA/nostruct-align/1x6zA.t04-thin90.a2m.gz, have 63928 columns in 271 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wwzA/nostruct-align/1wwzA.t04-thin90.a2m.gz # 1wwzA.t04-thin90.a2m with 2280 sequences, total weight= 2280 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.839675 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wwzA/info/1wwzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wwzA/nostruct-align/1wwzA.t04-thin90.a2m.gz, have 64085 columns in 272 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1amf/nostruct-align/1amf.t04-thin90.a2m.gz # 1amf.t04-thin90.a2m with 1427 sequences, total weight= 1427 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.873387 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1amf/info/1amf.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1amf/nostruct-align/1amf.t04-thin90.a2m.gz, have 64316 columns in 273 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nogA/nostruct-align/1nogA.t04-thin90.a2m.gz # 1nogA.t04-thin90.a2m with 87 sequences, total weight= 17.6839 avg weight= 0.203263 39 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nogA/info/1nogA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nogA/nostruct-align/1nogA.t04-thin90.a2m.gz, have 64465 columns in 274 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kid/nostruct-align/1kid.t04-thin90.a2m.gz # 1kid.t04-thin90.a2m with 350 sequences, total weight= 15.1035 avg weight= 0.0431527 36 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kid/info/1kid.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kid/nostruct-align/1kid.t04-thin90.a2m.gz, have 64658 columns in 275 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ryqA/nostruct-align/1ryqA.t04-thin90.a2m.gz # 1ryqA.t04-thin90.a2m with 45 sequences, total weight= 13.0734 avg weight= 0.29052 36 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ryqA/info/1ryqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1ryqA/nostruct-align/1ryqA.t04-thin90.a2m.gz, have 64722 columns in 276 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n4wA/nostruct-align/1n4wA.t04-thin90.a2m.gz # 1n4wA.t04-thin90.a2m with 2119 sequences, total weight= 2119 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.870371 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n4wA/info/1n4wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n4wA/nostruct-align/1n4wA.t04-thin90.a2m.gz, have 65220 columns in 277 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e7lA/nostruct-align/1e7lA.t04-thin90.a2m.gz # 1e7lA.t04-thin90.a2m with 14 sequences, total weight= 10.5105 avg weight= 0.750753 20 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e7lA/info/1e7lA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e7lA/nostruct-align/1e7lA.t04-thin90.a2m.gz, have 65377 columns in 278 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jyeA/nostruct-align/1jyeA.t04-thin90.a2m.gz # 1jyeA.t04-thin90.a2m with 1355 sequences, total weight= 1355 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00183 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jyeA/info/1jyeA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jyeA/nostruct-align/1jyeA.t04-thin90.a2m.gz, have 65648 columns in 279 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g66A/nostruct-align/1g66A.t04-thin90.a2m.gz # 1g66A.t04-thin90.a2m with 103 sequences, total weight= 103 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26964 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g66A/info/1g66A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g66A/nostruct-align/1g66A.t04-thin90.a2m.gz, have 65855 columns in 280 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/19/19hcA/nostruct-align/19hcA.t04-thin90.a2m.gz # 19hcA.t04-thin90.a2m with 340 sequences, total weight= 340 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.763407 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/19/19hcA/info/19hcA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/19/19hcA/nostruct-align/19hcA.t04-thin90.a2m.gz, have 66147 columns in 281 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bebA/nostruct-align/1bebA.t04-thin90.a2m.gz # 1bebA.t04-thin90.a2m with 263 sequences, total weight= 263 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.992111 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bebA/info/1bebA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1bebA/nostruct-align/1bebA.t04-thin90.a2m.gz, have 66303 columns in 282 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ii5A/nostruct-align/1ii5A.t04-thin90.a2m.gz # 1ii5A.t04-thin90.a2m with 1576 sequences, total weight= 1576 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.915862 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ii5A/info/1ii5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1ii5A/nostruct-align/1ii5A.t04-thin90.a2m.gz, have 66524 columns in 283 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wmzA/nostruct-align/1wmzA.t04-thin90.a2m.gz # 1wmzA.t04-thin90.a2m with 1460 sequences, total weight= 1460 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.970846 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wmzA/info/1wmzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wmzA/nostruct-align/1wmzA.t04-thin90.a2m.gz, have 66664 columns in 284 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oafA/nostruct-align/1oafA.t04-thin90.a2m.gz # 1oafA.t04-thin90.a2m with 580 sequences, total weight= 59.4054 avg weight= 0.102423 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30139 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oafA/info/1oafA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oafA/nostruct-align/1oafA.t04-thin90.a2m.gz, have 66914 columns in 285 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i0rA/nostruct-align/1i0rA.t04-thin90.a2m.gz # 1i0rA.t04-thin90.a2m with 344 sequences, total weight= 344 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20736 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i0rA/info/1i0rA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i0rA/nostruct-align/1i0rA.t04-thin90.a2m.gz, have 67075 columns in 286 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yocA/nostruct-align/1yocA.t04-thin90.a2m.gz # 1yocA.t04-thin90.a2m with 441 sequences, total weight= 441 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0252 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yocA/info/1yocA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1yocA/nostruct-align/1yocA.t04-thin90.a2m.gz, have 67220 columns in 287 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nbuA/nostruct-align/1nbuA.t04-thin90.a2m.gz # 1nbuA.t04-thin90.a2m with 151 sequences, total weight= 66.0431 avg weight= 0.437372 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3011 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nbuA/info/1nbuA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nbuA/nostruct-align/1nbuA.t04-thin90.a2m.gz, have 67338 columns in 288 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d02A/nostruct-align/1d02A.t04-thin90.a2m.gz # 1d02A.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.615068 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d02A/info/1d02A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d02A/nostruct-align/1d02A.t04-thin90.a2m.gz, have 67535 columns in 289 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vl1A/nostruct-align/1vl1A.t04-thin90.a2m.gz # 1vl1A.t04-thin90.a2m with 284 sequences, total weight= 66.5884 avg weight= 0.234466 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vl1A/info/1vl1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vl1A/nostruct-align/1vl1A.t04-thin90.a2m.gz, have 67753 columns in 290 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cqmA/nostruct-align/1cqmA.t04-thin90.a2m.gz # 1cqmA.t04-thin90.a2m with 149 sequences, total weight= 68.2859 avg weight= 0.458294 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30076 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cqmA/info/1cqmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1cqmA/nostruct-align/1cqmA.t04-thin90.a2m.gz, have 67851 columns in 291 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1io7A/nostruct-align/1io7A.t04-thin90.a2m.gz # 1io7A.t04-thin90.a2m with 1876 sequences, total weight= 1876 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14075 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1io7A/info/1io7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1io7A/nostruct-align/1io7A.t04-thin90.a2m.gz, have 68217 columns in 292 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uwwA/nostruct-align/1uwwA.t04-thin90.a2m.gz # 1uwwA.t04-thin90.a2m with 14 sequences, total weight= 6.58951 avg weight= 0.470679 18 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uwwA/info/1uwwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uwwA/nostruct-align/1uwwA.t04-thin90.a2m.gz, have 68401 columns in 293 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iktA/nostruct-align/1iktA.t04-thin90.a2m.gz # 1iktA.t04-thin90.a2m with 91 sequences, total weight= 85.5767 avg weight= 0.940403 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iktA/info/1iktA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iktA/nostruct-align/1iktA.t04-thin90.a2m.gz, have 68516 columns in 294 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yqhA/nostruct-align/1yqhA.t04-thin90.a2m.gz # 1yqhA.t04-thin90.a2m with 78 sequences, total weight= 35.9062 avg weight= 0.460335 44 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yqhA/info/1yqhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1yqhA/nostruct-align/1yqhA.t04-thin90.a2m.gz, have 68620 columns in 295 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j8rA/nostruct-align/1j8rA.t04-thin90.a2m.gz # 1j8rA.t04-thin90.a2m with 6 sequences, total weight= 3.63797 avg weight= 0.606329 14 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j8rA/info/1j8rA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j8rA/nostruct-align/1j8rA.t04-thin90.a2m.gz, have 68816 columns in 296 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gweA/nostruct-align/1gweA.t04-thin90.a2m.gz # 1gweA.t04-thin90.a2m with 302 sequences, total weight= 53.383 avg weight= 0.176765 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gweA/info/1gweA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gweA/nostruct-align/1gweA.t04-thin90.a2m.gz, have 69314 columns in 297 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ispA/nostruct-align/1ispA.t04-thin90.a2m.gz # 1ispA.t04-thin90.a2m with 2309 sequences, total weight= 2309 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.745048 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ispA/info/1ispA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1ispA/nostruct-align/1ispA.t04-thin90.a2m.gz, have 69493 columns in 298 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nrvA/nostruct-align/1nrvA.t04-thin90.a2m.gz # 1nrvA.t04-thin90.a2m with 500 sequences, total weight= 500 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29186 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nrvA/info/1nrvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nrvA/nostruct-align/1nrvA.t04-thin90.a2m.gz, have 69593 columns in 299 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cs1A/nostruct-align/1cs1A.t04-thin90.a2m.gz # 1cs1A.t04-thin90.a2m with 2215 sequences, total weight= 2215 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01974 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cs1A/info/1cs1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1cs1A/nostruct-align/1cs1A.t04-thin90.a2m.gz, have 69977 columns in 300 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bdmA/nostruct-align/1bdmA.t04-thin90.a2m.gz # 1bdmA.t04-thin90.a2m with 1684 sequences, total weight= 1684 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02299 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bdmA/info/1bdmA.stride-mixed.near-backbone-11 WARNING: skipping a, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1b/1bdmA/nostruct-align/1bdmA.t04-thin90.a2m.gz, have 70294 columns in 301 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lc5A/nostruct-align/1lc5A.t04-thin90.a2m.gz # 1lc5A.t04-thin90.a2m with 2120 sequences, total weight= 2120 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0322 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lc5A/info/1lc5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lc5A/nostruct-align/1lc5A.t04-thin90.a2m.gz, have 70649 columns in 302 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w2fA/nostruct-align/1w2fA.t04-thin90.a2m.gz # 1w2fA.t04-thin90.a2m with 102 sequences, total weight= 61.35 avg weight= 0.601471 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w2fA/info/1w2fA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w2fA/nostruct-align/1w2fA.t04-thin90.a2m.gz, have 70925 columns in 303 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1je0A/nostruct-align/1je0A.t04-thin90.a2m.gz # 1je0A.t04-thin90.a2m with 541 sequences, total weight= 541 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00467 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1je0A/info/1je0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1je0A/nostruct-align/1je0A.t04-thin90.a2m.gz, have 71151 columns in 304 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iab/nostruct-align/1iab.t04-thin90.a2m.gz # 1iab.t04-thin90.a2m with 358 sequences, total weight= 358 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23898 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iab/info/1iab.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iab/nostruct-align/1iab.t04-thin90.a2m.gz, have 71351 columns in 305 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gnyA/nostruct-align/1gnyA.t04-thin90.a2m.gz # 1gnyA.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13668 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gnyA/info/1gnyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gnyA/nostruct-align/1gnyA.t04-thin90.a2m.gz, have 71504 columns in 306 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y9iA/nostruct-align/1y9iA.t04-thin90.a2m.gz # 1y9iA.t04-thin90.a2m with 111 sequences, total weight= 55.4651 avg weight= 0.499685 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y9iA/info/1y9iA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1y9iA/nostruct-align/1y9iA.t04-thin90.a2m.gz, have 71663 columns in 307 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1na3A/nostruct-align/1na3A.t04-thin90.a2m.gz # 1na3A.t04-thin90.a2m with 3809 sequences, total weight= 3809 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.960599 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1na3A/info/1na3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1na3A/nostruct-align/1na3A.t04-thin90.a2m.gz, have 71749 columns in 308 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m6sA/nostruct-align/1m6sA.t04-thin90.a2m.gz # 1m6sA.t04-thin90.a2m with 2107 sequences, total weight= 2107 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03208 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m6sA/info/1m6sA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m6sA/nostruct-align/1m6sA.t04-thin90.a2m.gz, have 72092 columns in 309 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lb6A/nostruct-align/1lb6A.t04-thin90.a2m.gz # 1lb6A.t04-thin90.a2m with 100 sequences, total weight= 82.1998 avg weight= 0.821998 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lb6A/info/1lb6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lb6A/nostruct-align/1lb6A.t04-thin90.a2m.gz, have 72247 columns in 310 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1ga6A/nostruct-align/1ga6A.t04-thin90.a2m.gz # 1ga6A.t04-thin90.a2m with 911 sequences, total weight= 911 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05971 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1ga6A/info/1ga6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1ga6A/nostruct-align/1ga6A.t04-thin90.a2m.gz, have 72616 columns in 311 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1agjA/nostruct-align/1agjA.t04-thin90.a2m.gz # 1agjA.t04-thin90.a2m with 1981 sequences, total weight= 1981 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23126 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1agjA/info/1agjA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1agjA/nostruct-align/1agjA.t04-thin90.a2m.gz, have 72858 columns in 312 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g4yB/nostruct-align/1g4yB.t04-thin90.a2m.gz # 1g4yB.t04-thin90.a2m with 13 sequences, total weight= 4.48147 avg weight= 0.344728 15 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g4yB/info/1g4yB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g4yB/nostruct-align/1g4yB.t04-thin90.a2m.gz, have 72939 columns in 313 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tzpA/nostruct-align/1tzpA.t04-thin90.a2m.gz # 1tzpA.t04-thin90.a2m with 25 sequences, total weight= 7.75681 avg weight= 0.310272 26 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tzpA/info/1tzpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tzpA/nostruct-align/1tzpA.t04-thin90.a2m.gz, have 73179 columns in 314 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vie/nostruct-align/1vie.t04-thin90.a2m.gz # 1vie.t04-thin90.a2m with 3 sequences, total weight= 1.86785 avg weight= 0.622616 10 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vie/info/1vie.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vie/nostruct-align/1vie.t04-thin90.a2m.gz, have 73239 columns in 315 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dk0A/nostruct-align/1dk0A.t04-thin90.a2m.gz # 1dk0A.t04-thin90.a2m with 4 sequences, total weight= 3.5436 avg weight= 0.885899 12 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dk0A/info/1dk0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dk0A/nostruct-align/1dk0A.t04-thin90.a2m.gz, have 73412 columns in 316 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l8rA/nostruct-align/1l8rA.t04-thin90.a2m.gz # 1l8rA.t04-thin90.a2m with 10 sequences, total weight= 2.54604 avg weight= 0.254604 11 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l8rA/info/1l8rA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1l8rA/nostruct-align/1l8rA.t04-thin90.a2m.gz, have 73513 columns in 317 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h7cA/nostruct-align/1h7cA.t04-thin90.a2m.gz # 1h7cA.t04-thin90.a2m with 21 sequences, total weight= 15.7733 avg weight= 0.751108 26 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h7cA/info/1h7cA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h7cA/nostruct-align/1h7cA.t04-thin90.a2m.gz, have 73616 columns in 318 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kveB/nostruct-align/1kveB.t04-thin90.a2m.gz # 1kveB.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04665 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kveB/info/1kveB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kveB/nostruct-align/1kveB.t04-thin90.a2m.gz, have 73693 columns in 319 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1elwA/nostruct-align/1elwA.t04-thin90.a2m.gz # 1elwA.t04-thin90.a2m with 3762 sequences, total weight= 3762 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.885916 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1elwA/info/1elwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1elwA/nostruct-align/1elwA.t04-thin90.a2m.gz, have 73810 columns in 320 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1aho/nostruct-align/1aho.t04-thin90.a2m.gz # 1aho.t04-thin90.a2m with 108 sequences, total weight= 10.7827 avg weight= 0.0998395 38 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1aho/info/1aho.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1aho/nostruct-align/1aho.t04-thin90.a2m.gz, have 73874 columns in 321 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tvxA/nostruct-align/1tvxA.t04-thin90.a2m.gz # 1tvxA.t04-thin90.a2m with 169 sequences, total weight= 35.8162 avg weight= 0.21193 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30036 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tvxA/info/1tvxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tvxA/nostruct-align/1tvxA.t04-thin90.a2m.gz, have 73938 columns in 322 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rk6A/nostruct-align/1rk6A.t04-thin90.a2m.gz # 1rk6A.t04-thin90.a2m with 1333 sequences, total weight= 1333 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.85959 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rk6A/info/1rk6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rk6A/nostruct-align/1rk6A.t04-thin90.a2m.gz, have 74412 columns in 323 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w0pA/nostruct-align/1w0pA.t04-thin90.a2m.gz # 1w0pA.t04-thin90.a2m with 346 sequences, total weight= 346 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04439 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w0pA/info/1w0pA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w0pA/nostruct-align/1w0pA.t04-thin90.a2m.gz, have 75165 columns in 324 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o9iA/nostruct-align/1o9iA.t04-thin90.a2m.gz # 1o9iA.t04-thin90.a2m with 47 sequences, total weight= 15.8392 avg weight= 0.337005 31 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o9iA/info/1o9iA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o9iA/nostruct-align/1o9iA.t04-thin90.a2m.gz, have 75431 columns in 325 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jboA/nostruct-align/1jboA.t04-thin90.a2m.gz # 1jboA.t04-thin90.a2m with 250 sequences, total weight= 33.1709 avg weight= 0.132684 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jboA/info/1jboA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jboA/nostruct-align/1jboA.t04-thin90.a2m.gz, have 75593 columns in 326 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jz8A/nostruct-align/1jz8A.t04-thin90.a2m.gz # 1jz8A.t04-thin90.a2m with 712 sequences, total weight= 712 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04088 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jz8A/info/1jz8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jz8A/nostruct-align/1jz8A.t04-thin90.a2m.gz, have 76604 columns in 327 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lkkA/nostruct-align/1lkkA.t04-thin90.a2m.gz # 1lkkA.t04-thin90.a2m with 441 sequences, total weight= 441 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23535 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lkkA/info/1lkkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lkkA/nostruct-align/1lkkA.t04-thin90.a2m.gz, have 76709 columns in 328 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j83A/nostruct-align/1j83A.t04-thin90.a2m.gz # 1j83A.t04-thin90.a2m with 14 sequences, total weight= 6.15068 avg weight= 0.439334 18 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j83A/info/1j83A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j83A/nostruct-align/1j83A.t04-thin90.a2m.gz, have 76889 columns in 329 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n7oA/nostruct-align/1n7oA.t04-thin90.a2m.gz # 1n7oA.t04-thin90.a2m with 57 sequences, total weight= 57 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15075 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n7oA/info/1n7oA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n7oA/nostruct-align/1n7oA.t04-thin90.a2m.gz, have 77610 columns in 330 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kqfA/nostruct-align/1kqfA.t04-thin90.a2m.gz # 1kqfA.t04-thin90.a2m with 758 sequences, total weight= 758 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10969 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kqfA/info/1kqfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kqfA/nostruct-align/1kqfA.t04-thin90.a2m.gz, have 78592 columns in 331 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mtyB/nostruct-align/1mtyB.t04-thin90.a2m.gz # 1mtyB.t04-thin90.a2m with 97 sequences, total weight= 73.0116 avg weight= 0.752697 45 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mtyB/info/1mtyB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mtyB/nostruct-align/1mtyB.t04-thin90.a2m.gz, have 78976 columns in 332 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jtgB/nostruct-align/1jtgB.t04-thin90.a2m.gz # 1jtgB.t04-thin90.a2m with 4 sequences, total weight= 4 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1647 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jtgB/info/1jtgB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jtgB/nostruct-align/1jtgB.t04-thin90.a2m.gz, have 79141 columns in 333 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q4uA/nostruct-align/1q4uA.t04-thin90.a2m.gz # 1q4uA.t04-thin90.a2m with 593 sequences, total weight= 593 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.916304 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q4uA/info/1q4uA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q4uA/nostruct-align/1q4uA.t04-thin90.a2m.gz, have 79281 columns in 334 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ujpA/nostruct-align/1ujpA.t04-thin90.a2m.gz # 1ujpA.t04-thin90.a2m with 313 sequences, total weight= 313 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15904 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ujpA/info/1ujpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ujpA/nostruct-align/1ujpA.t04-thin90.a2m.gz, have 79524 columns in 335 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h70A/nostruct-align/1h70A.t04-thin90.a2m.gz # 1h70A.t04-thin90.a2m with 225 sequences, total weight= 225 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11874 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h70A/info/1h70A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h70A/nostruct-align/1h70A.t04-thin90.a2m.gz, have 79779 columns in 336 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nkd/nostruct-align/1nkd.t04-thin90.a2m.gz # 1nkd.t04-thin90.a2m with 14 sequences, total weight= 4.06887 avg weight= 0.290634 15 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nkd/info/1nkd.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nkd/nostruct-align/1nkd.t04-thin90.a2m.gz, have 79838 columns in 337 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xdzA/nostruct-align/1xdzA.t04-thin90.a2m.gz # 1xdzA.t04-thin90.a2m with 2328 sequences, total weight= 2328 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.797974 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xdzA/info/1xdzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xdzA/nostruct-align/1xdzA.t04-thin90.a2m.gz, have 80076 columns in 338 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iv3A/nostruct-align/1iv3A.t04-thin90.a2m.gz # 1iv3A.t04-thin90.a2m with 119 sequences, total weight= 10.0417 avg weight= 0.0843836 34 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iv3A/info/1iv3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iv3A/nostruct-align/1iv3A.t04-thin90.a2m.gz, have 80226 columns in 339 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jatB/nostruct-align/1jatB.t04-thin90.a2m.gz # 1jatB.t04-thin90.a2m with 472 sequences, total weight= 239.198 avg weight= 0.506775 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30774 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jatB/info/1jatB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jatB/nostruct-align/1jatB.t04-thin90.a2m.gz, have 80358 columns in 340 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xfiA/nostruct-align/1xfiA.t04-thin90.a2m.gz # 1xfiA.t04-thin90.a2m with 80 sequences, total weight= 80 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19479 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xfiA/info/1xfiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xfiA/nostruct-align/1xfiA.t04-thin90.a2m.gz, have 80701 columns in 341 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1plc/nostruct-align/1plc.t04-thin90.a2m.gz # 1plc.t04-thin90.a2m with 185 sequences, total weight= 185 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29488 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1plc/info/1plc.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1plc/nostruct-align/1plc.t04-thin90.a2m.gz, have 80800 columns in 342 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jf8A/nostruct-align/1jf8A.t04-thin90.a2m.gz # 1jf8A.t04-thin90.a2m with 310 sequences, total weight= 133.038 avg weight= 0.429155 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30499 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jf8A/info/1jf8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jf8A/nostruct-align/1jf8A.t04-thin90.a2m.gz, have 80930 columns in 343 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1odmA/nostruct-align/1odmA.t04-thin90.a2m.gz # 1odmA.t04-thin90.a2m with 551 sequences, total weight= 551 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22434 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1odmA/info/1odmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1odmA/nostruct-align/1odmA.t04-thin90.a2m.gz, have 81259 columns in 344 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ew4A/nostruct-align/1ew4A.t04-thin90.a2m.gz # 1ew4A.t04-thin90.a2m with 61 sequences, total weight= 19.3309 avg weight= 0.3169 40 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ew4A/info/1ew4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1ew4A/nostruct-align/1ew4A.t04-thin90.a2m.gz, have 81365 columns in 345 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gutA/nostruct-align/1gutA.t04-thin90.a2m.gz # 1gutA.t04-thin90.a2m with 132 sequences, total weight= 21.701 avg weight= 0.164402 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gutA/info/1gutA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gutA/nostruct-align/1gutA.t04-thin90.a2m.gz, have 81432 columns in 346 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wz8A/nostruct-align/1wz8A.t04-thin90.a2m.gz # 1wz8A.t04-thin90.a2m with 1706 sequences, total weight= 1706 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16051 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wz8A/info/1wz8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wz8A/nostruct-align/1wz8A.t04-thin90.a2m.gz, have 81695 columns in 347 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mxrA/nostruct-align/1mxrA.t04-thin90.a2m.gz # 1mxrA.t04-thin90.a2m with 217 sequences, total weight= 217 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25536 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mxrA/info/1mxrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mxrA/nostruct-align/1mxrA.t04-thin90.a2m.gz, have 82034 columns in 348 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n6aA/nostruct-align/1n6aA.t04-thin90.a2m.gz # 1n6aA.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14362 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n6aA/info/1n6aA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n6aA/nostruct-align/1n6aA.t04-thin90.a2m.gz, have 82268 columns in 349 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ecsA/nostruct-align/1ecsA.t04-thin90.a2m.gz # 1ecsA.t04-thin90.a2m with 1354 sequences, total weight= 1354 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.864407 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ecsA/info/1ecsA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1ecsA/nostruct-align/1ecsA.t04-thin90.a2m.gz, have 82388 columns in 350 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1of8A/nostruct-align/1of8A.t04-thin90.a2m.gz # 1of8A.t04-thin90.a2m with 292 sequences, total weight= 36.0109 avg weight= 0.123325 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1of8A/info/1of8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1of8A/nostruct-align/1of8A.t04-thin90.a2m.gz, have 82727 columns in 351 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f7dA/nostruct-align/1f7dA.t04-thin90.a2m.gz # 1f7dA.t04-thin90.a2m with 414 sequences, total weight= 414 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17016 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f7dA/info/1f7dA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f7dA/nostruct-align/1f7dA.t04-thin90.a2m.gz, have 82845 columns in 352 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lk9A/nostruct-align/1lk9A.t04-thin90.a2m.gz # 1lk9A.t04-thin90.a2m with 2151 sequences, total weight= 2151 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00669 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lk9A/info/1lk9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lk9A/nostruct-align/1lk9A.t04-thin90.a2m.gz, have 83270 columns in 353 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pmhX/nostruct-align/1pmhX.t04-thin90.a2m.gz # 1pmhX.t04-thin90.a2m with 5 sequences, total weight= 5 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26433 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pmhX/info/1pmhX.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pmhX/nostruct-align/1pmhX.t04-thin90.a2m.gz, have 83453 columns in 354 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yv4A/nostruct-align/1yv4A.t04-thin90.a2m.gz # 1yv4A.t04-thin90.a2m with 183 sequences, total weight= 22.9198 avg weight= 0.125245 44 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yv4A/info/1yv4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1yv4A/nostruct-align/1yv4A.t04-thin90.a2m.gz, have 83557 columns in 355 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qz5A/nostruct-align/1qz5A.t04-thin90.a2m.gz # 1qz5A.t04-thin90.a2m with 627 sequences, total weight= 285.758 avg weight= 0.455755 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30894 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qz5A/info/1qz5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qz5A/nostruct-align/1qz5A.t04-thin90.a2m.gz, have 83916 columns in 356 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h99A/nostruct-align/1h99A.t04-thin90.a2m.gz # 1h99A.t04-thin90.a2m with 169 sequences, total weight= 169 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01272 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h99A/info/1h99A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h99A/nostruct-align/1h99A.t04-thin90.a2m.gz, have 84136 columns in 357 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c9oA/nostruct-align/1c9oA.t04-thin90.a2m.gz # 1c9oA.t04-thin90.a2m with 396 sequences, total weight= 22.1454 avg weight= 0.0559228 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c9oA/info/1c9oA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1c9oA/nostruct-align/1c9oA.t04-thin90.a2m.gz, have 84202 columns in 358 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yx1A/nostruct-align/1yx1A.t04-thin90.a2m.gz # 1yx1A.t04-thin90.a2m with 756 sequences, total weight= 756 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.950199 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yx1A/info/1yx1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1yx1A/nostruct-align/1yx1A.t04-thin90.a2m.gz, have 84452 columns in 359 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yy6A/nostruct-align/1yy6A.t04-thin90.a2m.gz # 1yy6A.t04-thin90.a2m with 581 sequences, total weight= 581 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13454 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yy6A/info/1yy6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1yy6A/nostruct-align/1yy6A.t04-thin90.a2m.gz, have 84589 columns in 360 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iq6A/nostruct-align/1iq6A.t04-thin90.a2m.gz # 1iq6A.t04-thin90.a2m with 539 sequences, total weight= 539 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07913 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iq6A/info/1iq6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iq6A/nostruct-align/1iq6A.t04-thin90.a2m.gz, have 84721 columns in 361 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pwxA/nostruct-align/1pwxA.t04-thin90.a2m.gz # 1pwxA.t04-thin90.a2m with 2386 sequences, total weight= 120.993 avg weight= 0.0507098 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32547 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pwxA/info/1pwxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pwxA/nostruct-align/1pwxA.t04-thin90.a2m.gz, have 84973 columns in 362 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x7yA/nostruct-align/1x7yA.t04-thin90.a2m.gz # 1x7yA.t04-thin90.a2m with 1502 sequences, total weight= 1502 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01853 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x7yA/info/1x7yA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1x7yA/nostruct-align/1x7yA.t04-thin90.a2m.gz, have 85342 columns in 363 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rzhH/nostruct-align/1rzhH.t04-thin90.a2m.gz # 1rzhH.t04-thin90.a2m with 10 sequences, total weight= 4.39573 avg weight= 0.439573 17 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rzhH/info/1rzhH.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rzhH/nostruct-align/1rzhH.t04-thin90.a2m.gz, have 85580 columns in 364 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1es9A/nostruct-align/1es9A.t04-thin90.a2m.gz # 1es9A.t04-thin90.a2m with 701 sequences, total weight= 701 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.788339 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1es9A/info/1es9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1es9A/nostruct-align/1es9A.t04-thin90.a2m.gz, have 85792 columns in 365 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1ja1A/nostruct-align/1ja1A.t04-thin90.a2m.gz # 1ja1A.t04-thin90.a2m with 1370 sequences, total weight= 1370 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.969048 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1ja1A/info/1ja1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1ja1A/nostruct-align/1ja1A.t04-thin90.a2m.gz, have 86408 columns in 366 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n9pA/nostruct-align/1n9pA.t04-thin90.a2m.gz # 1n9pA.t04-thin90.a2m with 50 sequences, total weight= 19.7875 avg weight= 0.39575 33 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n9pA/info/1n9pA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n9pA/nostruct-align/1n9pA.t04-thin90.a2m.gz, have 86605 columns in 367 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tp6A/nostruct-align/1tp6A.t04-thin90.a2m.gz # 1tp6A.t04-thin90.a2m with 11 sequences, total weight= 6.36856 avg weight= 0.57896 20 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tp6A/info/1tp6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tp6A/nostruct-align/1tp6A.t04-thin90.a2m.gz, have 86731 columns in 368 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wnaA/nostruct-align/1wnaA.t04-thin90.a2m.gz # 1wnaA.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.941934 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wnaA/info/1wnaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wnaA/nostruct-align/1wnaA.t04-thin90.a2m.gz, have 86858 columns in 369 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dszA/nostruct-align/1dszA.t04-thin90.a2m.gz # 1dszA.t04-thin90.a2m with 596 sequences, total weight= 39.7632 avg weight= 0.0667167 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30112 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dszA/info/1dszA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dszA/nostruct-align/1dszA.t04-thin90.a2m.gz, have 86933 columns in 370 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yge/nostruct-align/1yge.t04-thin90.a2m.gz # 1yge.t04-thin90.a2m with 150 sequences, total weight= 36.7475 avg weight= 0.244984 40 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yge/info/1yge.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1yge/nostruct-align/1yge.t04-thin90.a2m.gz, have 87772 columns in 371 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gmxA/nostruct-align/1gmxA.t04-thin90.a2m.gz # 1gmxA.t04-thin90.a2m with 1239 sequences, total weight= 1239 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06504 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gmxA/info/1gmxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gmxA/nostruct-align/1gmxA.t04-thin90.a2m.gz, have 87880 columns in 372 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fxlA/nostruct-align/1fxlA.t04-thin90.a2m.gz # 1fxlA.t04-thin90.a2m with 1839 sequences, total weight= 1839 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13649 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fxlA/info/1fxlA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fxlA/nostruct-align/1fxlA.t04-thin90.a2m.gz, have 88047 columns in 373 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u4bA/nostruct-align/1u4bA.t04-thin90.a2m.gz # 1u4bA.t04-thin90.a2m with 498 sequences, total weight= 498 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19629 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u4bA/info/1u4bA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1u4bA/nostruct-align/1u4bA.t04-thin90.a2m.gz, have 88627 columns in 374 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u7iA/nostruct-align/1u7iA.t04-thin90.a2m.gz # 1u7iA.t04-thin90.a2m with 414 sequences, total weight= 414 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01131 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u7iA/info/1u7iA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1u7iA/nostruct-align/1u7iA.t04-thin90.a2m.gz, have 88761 columns in 375 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1khiA/nostruct-align/1khiA.t04-thin90.a2m.gz # 1khiA.t04-thin90.a2m with 62 sequences, total weight= 13.0066 avg weight= 0.209784 29 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1khiA/info/1khiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1khiA/nostruct-align/1khiA.t04-thin90.a2m.gz, have 88908 columns in 376 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m2dA/nostruct-align/1m2dA.t04-thin90.a2m.gz # 1m2dA.t04-thin90.a2m with 102 sequences, total weight= 81.868 avg weight= 0.802627 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m2dA/info/1m2dA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m2dA/nostruct-align/1m2dA.t04-thin90.a2m.gz, have 89009 columns in 377 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oohA/nostruct-align/1oohA.t04-thin90.a2m.gz # 1oohA.t04-thin90.a2m with 191 sequences, total weight= 191 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.947103 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oohA/info/1oohA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oohA/nostruct-align/1oohA.t04-thin90.a2m.gz, have 89135 columns in 378 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d4oA/nostruct-align/1d4oA.t04-thin90.a2m.gz # 1d4oA.t04-thin90.a2m with 73 sequences, total weight= 4.75161 avg weight= 0.0650905 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d4oA/info/1d4oA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d4oA/nostruct-align/1d4oA.t04-thin90.a2m.gz, have 89312 columns in 379 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gk9A/nostruct-align/1gk9A.t04-thin90.a2m.gz # 1gk9A.t04-thin90.a2m with 78 sequences, total weight= 78 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24908 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gk9A/info/1gk9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gk9A/nostruct-align/1gk9A.t04-thin90.a2m.gz, have 89520 columns in 380 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f46A/nostruct-align/1f46A.t04-thin90.a2m.gz # 1f46A.t04-thin90.a2m with 30 sequences, total weight= 16.9729 avg weight= 0.565765 33 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f46A/info/1f46A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f46A/nostruct-align/1f46A.t04-thin90.a2m.gz, have 89659 columns in 381 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dy5A/nostruct-align/1dy5A.t04-thin90.a2m.gz # 1dy5A.t04-thin90.a2m with 174 sequences, total weight= 28.7343 avg weight= 0.165139 45 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dy5A/info/1dy5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dy5A/nostruct-align/1dy5A.t04-thin90.a2m.gz, have 89783 columns in 382 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mdc/nostruct-align/1mdc.t04-thin90.a2m.gz # 1mdc.t04-thin90.a2m with 144 sequences, total weight= 30.8006 avg weight= 0.213893 42 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mdc/info/1mdc.stride-mixed.near-backbone-11 WARNING: skipping h, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1m/1mdc/nostruct-align/1mdc.t04-thin90.a2m.gz, have 89914 columns in 383 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q6zA/nostruct-align/1q6zA.t04-thin90.a2m.gz # 1q6zA.t04-thin90.a2m with 1283 sequences, total weight= 1283 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03436 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q6zA/info/1q6zA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q6zA/nostruct-align/1q6zA.t04-thin90.a2m.gz, have 90438 columns in 384 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jf3A/nostruct-align/1jf3A.t04-thin90.a2m.gz # 1jf3A.t04-thin90.a2m with 801 sequences, total weight= 801 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26216 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jf3A/info/1jf3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jf3A/nostruct-align/1jf3A.t04-thin90.a2m.gz, have 90585 columns in 385 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhvA/nostruct-align/1vhvA.t04-thin90.a2m.gz # 1vhvA.t04-thin90.a2m with 779 sequences, total weight= 779 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11469 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhvA/info/1vhvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vhvA/nostruct-align/1vhvA.t04-thin90.a2m.gz, have 90836 columns in 386 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n55A/nostruct-align/1n55A.t04-thin90.a2m.gz # 1n55A.t04-thin90.a2m with 322 sequences, total weight= 27.2392 avg weight= 0.0845937 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n55A/info/1n55A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n55A/nostruct-align/1n55A.t04-thin90.a2m.gz, have 91085 columns in 387 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mtyD/nostruct-align/1mtyD.t04-thin90.a2m.gz # 1mtyD.t04-thin90.a2m with 108 sequences, total weight= 68.8226 avg weight= 0.637246 40 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mtyD/info/1mtyD.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mtyD/nostruct-align/1mtyD.t04-thin90.a2m.gz, have 91597 columns in 388 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o98A/nostruct-align/1o98A.t04-thin90.a2m.gz # 1o98A.t04-thin90.a2m with 516 sequences, total weight= 516 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08222 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o98A/info/1o98A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o98A/nostruct-align/1o98A.t04-thin90.a2m.gz, have 92106 columns in 389 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3p/3pviA/nostruct-align/3pviA.t04-thin90.a2m.gz # 3pviA.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24387 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3p/3pviA/info/3pviA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/3p/3pviA/nostruct-align/3pviA.t04-thin90.a2m.gz, have 92262 columns in 390 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uehA/nostruct-align/1uehA.t04-thin90.a2m.gz # 1uehA.t04-thin90.a2m with 238 sequences, total weight= 39.8255 avg weight= 0.167334 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uehA/info/1uehA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uehA/nostruct-align/1uehA.t04-thin90.a2m.gz, have 92476 columns in 391 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q9uA/nostruct-align/1q9uA.t04-thin90.a2m.gz # 1q9uA.t04-thin90.a2m with 58 sequences, total weight= 58 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1295 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q9uA/info/1q9uA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q9uA/nostruct-align/1q9uA.t04-thin90.a2m.gz, have 92604 columns in 392 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gwuA/nostruct-align/1gwuA.t04-thin90.a2m.gz # 1gwuA.t04-thin90.a2m with 599 sequences, total weight= 97.5615 avg weight= 0.162874 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30351 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gwuA/info/1gwuA.stride-mixed.near-backbone-11 WARNING: skipping e, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1g/1gwuA/nostruct-align/1gwuA.t04-thin90.a2m.gz, have 92910 columns in 393 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n7hA/nostruct-align/1n7hA.t04-thin90.a2m.gz # 1n7hA.t04-thin90.a2m with 2140 sequences, total weight= 2140 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07493 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n7hA/info/1n7hA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n7hA/nostruct-align/1n7hA.t04-thin90.a2m.gz, have 93241 columns in 394 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q8fA/nostruct-align/1q8fA.t04-thin90.a2m.gz # 1q8fA.t04-thin90.a2m with 179 sequences, total weight= 175.383 avg weight= 0.979796 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q8fA/info/1q8fA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q8fA/nostruct-align/1q8fA.t04-thin90.a2m.gz, have 93549 columns in 395 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r2zA/nostruct-align/1r2zA.t04-thin90.a2m.gz # 1r2zA.t04-thin90.a2m with 198 sequences, total weight= 51.5702 avg weight= 0.260456 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30035 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r2zA/info/1r2zA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r2zA/nostruct-align/1r2zA.t04-thin90.a2m.gz, have 93822 columns in 396 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nwwA/nostruct-align/1nwwA.t04-thin90.a2m.gz # 1nwwA.t04-thin90.a2m with 249 sequences, total weight= 249 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.893296 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nwwA/info/1nwwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nwwA/nostruct-align/1nwwA.t04-thin90.a2m.gz, have 93967 columns in 397 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oq1A/nostruct-align/1oq1A.t04-thin90.a2m.gz # 1oq1A.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.61905 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oq1A/info/1oq1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oq1A/nostruct-align/1oq1A.t04-thin90.a2m.gz, have 94190 columns in 398 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qstA/nostruct-align/1qstA.t04-thin90.a2m.gz # 1qstA.t04-thin90.a2m with 2412 sequences, total weight= 2412 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.828861 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qstA/info/1qstA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qstA/nostruct-align/1qstA.t04-thin90.a2m.gz, have 94350 columns in 399 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k5nB/nostruct-align/1k5nB.t04-thin90.a2m.gz # 1k5nB.t04-thin90.a2m with 394 sequences, total weight= 23.722 avg weight= 0.0602082 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k5nB/info/1k5nB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k5nB/nostruct-align/1k5nB.t04-thin90.a2m.gz, have 94450 columns in 400 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eaqA/nostruct-align/1eaqA.t04-thin90.a2m.gz # 1eaqA.t04-thin90.a2m with 19 sequences, total weight= 3.9227 avg weight= 0.206458 15 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eaqA/info/1eaqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1eaqA/nostruct-align/1eaqA.t04-thin90.a2m.gz, have 94574 columns in 401 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i6lA/nostruct-align/1i6lA.t04-thin90.a2m.gz # 1i6lA.t04-thin90.a2m with 470 sequences, total weight= 470 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24912 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i6lA/info/1i6lA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i6lA/nostruct-align/1i6lA.t04-thin90.a2m.gz, have 94900 columns in 402 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xakA/nostruct-align/1xakA.t04-thin90.a2m.gz # 1xakA.t04-thin90.a2m with 2 sequences, total weight= 1.98129 avg weight= 0.990644 5 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xakA/info/1xakA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xakA/nostruct-align/1xakA.t04-thin90.a2m.gz, have 94968 columns in 403 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3s/3seb/nostruct-align/3seb.t04-thin90.a2m.gz # 3seb.t04-thin90.a2m with 88 sequences, total weight= 46.3777 avg weight= 0.52702 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3s/3seb/info/3seb.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/3s/3seb/nostruct-align/3seb.t04-thin90.a2m.gz, have 95206 columns in 404 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d2vC/nostruct-align/1d2vC.t04-thin90.a2m.gz # 1d2vC.t04-thin90.a2m with 155 sequences, total weight= 131.908 avg weight= 0.851017 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30045 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d2vC/info/1d2vC.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d2vC/nostruct-align/1d2vC.t04-thin90.a2m.gz, have 95672 columns in 405 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qv1A/nostruct-align/1qv1A.t04-thin90.a2m.gz # 1qv1A.t04-thin90.a2m with 665 sequences, total weight= 665 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08218 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qv1A/info/1qv1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qv1A/nostruct-align/1qv1A.t04-thin90.a2m.gz, have 95859 columns in 406 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x74A/nostruct-align/1x74A.t04-thin90.a2m.gz # 1x74A.t04-thin90.a2m with 613 sequences, total weight= 99.3273 avg weight= 0.162035 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30407 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x74A/info/1x74A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1x74A/nostruct-align/1x74A.t04-thin90.a2m.gz, have 96213 columns in 407 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qreA/nostruct-align/1qreA.t04-thin90.a2m.gz # 1qreA.t04-thin90.a2m with 1340 sequences, total weight= 1340 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04593 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qreA/info/1qreA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qreA/nostruct-align/1qreA.t04-thin90.a2m.gz, have 96423 columns in 408 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ow4A/nostruct-align/1ow4A.t04-thin90.a2m.gz # 1ow4A.t04-thin90.a2m with 12 sequences, total weight= 12 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15571 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ow4A/info/1ow4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ow4A/nostruct-align/1ow4A.t04-thin90.a2m.gz, have 96543 columns in 409 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mw9X/nostruct-align/1mw9X.t04-thin90.a2m.gz # 1mw9X.t04-thin90.a2m with 371 sequences, total weight= 69.4842 avg weight= 0.187289 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30183 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mw9X/info/1mw9X.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mw9X/nostruct-align/1mw9X.t04-thin90.a2m.gz, have 97099 columns in 410 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n57A/nostruct-align/1n57A.t04-thin90.a2m.gz # 1n57A.t04-thin90.a2m with 565 sequences, total weight= 565 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11023 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n57A/info/1n57A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n57A/nostruct-align/1n57A.t04-thin90.a2m.gz, have 97378 columns in 411 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t4bA/nostruct-align/1t4bA.t04-thin90.a2m.gz # 1t4bA.t04-thin90.a2m with 1450 sequences, total weight= 1450 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2475 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t4bA/info/1t4bA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t4bA/nostruct-align/1t4bA.t04-thin90.a2m.gz, have 97745 columns in 412 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mj5A/nostruct-align/1mj5A.t04-thin90.a2m.gz # 1mj5A.t04-thin90.a2m with 2350 sequences, total weight= 2350 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.753523 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mj5A/info/1mj5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mj5A/nostruct-align/1mj5A.t04-thin90.a2m.gz, have 98042 columns in 413 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o08A/nostruct-align/1o08A.t04-thin90.a2m.gz # 1o08A.t04-thin90.a2m with 2244 sequences, total weight= 2244 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.81674 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o08A/info/1o08A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o08A/nostruct-align/1o08A.t04-thin90.a2m.gz, have 98263 columns in 414 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hxiA/nostruct-align/1hxiA.t04-thin90.a2m.gz # 1hxiA.t04-thin90.a2m with 2811 sequences, total weight= 2811 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.970145 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hxiA/info/1hxiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hxiA/nostruct-align/1hxiA.t04-thin90.a2m.gz, have 98375 columns in 415 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1od6A/nostruct-align/1od6A.t04-thin90.a2m.gz # 1od6A.t04-thin90.a2m with 758 sequences, total weight= 758 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01599 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1od6A/info/1od6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1od6A/nostruct-align/1od6A.t04-thin90.a2m.gz, have 98530 columns in 416 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jbeA/nostruct-align/1jbeA.t04-thin90.a2m.gz # 1jbeA.t04-thin90.a2m with 2403 sequences, total weight= 166.37 avg weight= 0.0692342 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.34024 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jbeA/info/1jbeA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jbeA/nostruct-align/1jbeA.t04-thin90.a2m.gz, have 98656 columns in 417 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uzvA/nostruct-align/1uzvA.t04-thin90.a2m.gz # 1uzvA.t04-thin90.a2m with 12 sequences, total weight= 4.98491 avg weight= 0.415409 18 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uzvA/info/1uzvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uzvA/nostruct-align/1uzvA.t04-thin90.a2m.gz, have 98770 columns in 418 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wehA/nostruct-align/1wehA.t04-thin90.a2m.gz # 1wehA.t04-thin90.a2m with 257 sequences, total weight= 70.9907 avg weight= 0.276229 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3015 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wehA/info/1wehA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wehA/nostruct-align/1wehA.t04-thin90.a2m.gz, have 98941 columns in 419 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wojA/nostruct-align/1wojA.t04-thin90.a2m.gz # 1wojA.t04-thin90.a2m with 9 sequences, total weight= 3.10136 avg weight= 0.344596 14 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wojA/info/1wojA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wojA/nostruct-align/1wojA.t04-thin90.a2m.gz, have 99150 columns in 420 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lyqA/nostruct-align/1lyqA.t04-thin90.a2m.gz # 1lyqA.t04-thin90.a2m with 55 sequences, total weight= 24.3753 avg weight= 0.443188 42 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lyqA/info/1lyqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lyqA/nostruct-align/1lyqA.t04-thin90.a2m.gz, have 99251 columns in 421 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dmgA/nostruct-align/1dmgA.t04-thin90.a2m.gz # 1dmgA.t04-thin90.a2m with 196 sequences, total weight= 77.774 avg weight= 0.396806 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dmgA/info/1dmgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dmgA/nostruct-align/1dmgA.t04-thin90.a2m.gz, have 99423 columns in 422 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bemA/nostruct-align/2bemA.t04-thin90.a2m.gz # 2bemA.t04-thin90.a2m with 93 sequences, total weight= 49.2433 avg weight= 0.529498 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bemA/info/2bemA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2b/2bemA/nostruct-align/2bemA.t04-thin90.a2m.gz, have 99593 columns in 423 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1msk/nostruct-align/1msk.t04-thin90.a2m.gz # 1msk.t04-thin90.a2m with 90 sequences, total weight= 22.4791 avg weight= 0.249768 35 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1msk/info/1msk.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1msk/nostruct-align/1msk.t04-thin90.a2m.gz, have 99920 columns in 424 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1z/1zceA/nostruct-align/1zceA.t04-thin90.a2m.gz # 1zceA.t04-thin90.a2m with 100 sequences, total weight= 19.6 avg weight= 0.196 39 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1z/1zceA/info/1zceA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1z/1zceA/nostruct-align/1zceA.t04-thin90.a2m.gz, have 100066 columns in 425 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xd3A/nostruct-align/1xd3A.t04-thin90.a2m.gz # 1xd3A.t04-thin90.a2m with 95 sequences, total weight= 30.3798 avg weight= 0.319787 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xd3A/info/1xd3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xd3A/nostruct-align/1xd3A.t04-thin90.a2m.gz, have 100295 columns in 426 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y7bA/nostruct-align/1y7bA.t04-thin90.a2m.gz # 1y7bA.t04-thin90.a2m with 653 sequences, total weight= 653 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.954639 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y7bA/info/1y7bA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1y7bA/nostruct-align/1y7bA.t04-thin90.a2m.gz, have 100829 columns in 427 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dkiA/nostruct-align/1dkiA.t04-thin90.a2m.gz # 1dkiA.t04-thin90.a2m with 8 sequences, total weight= 8 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22506 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dkiA/info/1dkiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dkiA/nostruct-align/1dkiA.t04-thin90.a2m.gz, have 101132 columns in 428 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ofzA/nostruct-align/1ofzA.t04-thin90.a2m.gz # 1ofzA.t04-thin90.a2m with 30 sequences, total weight= 30 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03362 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ofzA/info/1ofzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ofzA/nostruct-align/1ofzA.t04-thin90.a2m.gz, have 101444 columns in 429 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hqsA/nostruct-align/1hqsA.t04-thin90.a2m.gz # 1hqsA.t04-thin90.a2m with 470 sequences, total weight= 57.3703 avg weight= 0.122064 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3005 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hqsA/info/1hqsA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hqsA/nostruct-align/1hqsA.t04-thin90.a2m.gz, have 101867 columns in 430 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1ds1A/nostruct-align/1ds1A.t04-thin90.a2m.gz # 1ds1A.t04-thin90.a2m with 287 sequences, total weight= 287 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.973365 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1ds1A/info/1ds1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1ds1A/nostruct-align/1ds1A.t04-thin90.a2m.gz, have 102190 columns in 431 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g8qA/nostruct-align/1g8qA.t04-thin90.a2m.gz # 1g8qA.t04-thin90.a2m with 23 sequences, total weight= 11.4998 avg weight= 0.49999 29 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g8qA/info/1g8qA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g8qA/nostruct-align/1g8qA.t04-thin90.a2m.gz, have 102280 columns in 432 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c7kA/nostruct-align/1c7kA.t04-thin90.a2m.gz # 1c7kA.t04-thin90.a2m with 239 sequences, total weight= 151.623 avg weight= 0.634408 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30228 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c7kA/info/1c7kA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1c7kA/nostruct-align/1c7kA.t04-thin90.a2m.gz, have 102412 columns in 433 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mwpA/nostruct-align/1mwpA.t04-thin90.a2m.gz # 1mwpA.t04-thin90.a2m with 16 sequences, total weight= 4.87683 avg weight= 0.304802 19 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mwpA/info/1mwpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mwpA/nostruct-align/1mwpA.t04-thin90.a2m.gz, have 102508 columns in 434 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kicA/nostruct-align/1kicA.t04-thin90.a2m.gz # 1kicA.t04-thin90.a2m with 172 sequences, total weight= 172 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27869 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kicA/info/1kicA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kicA/nostruct-align/1kicA.t04-thin90.a2m.gz, have 102825 columns in 435 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1ntyA/nostruct-align/1ntyA.t04-thin90.a2m.gz # 1ntyA.t04-thin90.a2m with 550 sequences, total weight= 550 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00416 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1ntyA/info/1ntyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1ntyA/nostruct-align/1ntyA.t04-thin90.a2m.gz, have 103130 columns in 436 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1ny1A/nostruct-align/1ny1A.t04-thin90.a2m.gz # 1ny1A.t04-thin90.a2m with 582 sequences, total weight= 582 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.924533 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1ny1A/info/1ny1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1ny1A/nostruct-align/1ny1A.t04-thin90.a2m.gz, have 103365 columns in 437 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o1yA/nostruct-align/1o1yA.t04-thin90.a2m.gz # 1o1yA.t04-thin90.a2m with 1844 sequences, total weight= 1844 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.933591 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o1yA/info/1o1yA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o1yA/nostruct-align/1o1yA.t04-thin90.a2m.gz, have 103595 columns in 438 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t92A/nostruct-align/1t92A.t04-thin90.a2m.gz # 1t92A.t04-thin90.a2m with 63 sequences, total weight= 11.3521 avg weight= 0.180192 33 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t92A/info/1t92A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t92A/nostruct-align/1t92A.t04-thin90.a2m.gz, have 103703 columns in 439 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1izcA/nostruct-align/1izcA.t04-thin90.a2m.gz # 1izcA.t04-thin90.a2m with 848 sequences, total weight= 848 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12935 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1izcA/info/1izcA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1izcA/nostruct-align/1izcA.t04-thin90.a2m.gz, have 104002 columns in 440 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k8uA/nostruct-align/1k8uA.t04-thin90.a2m.gz # 1k8uA.t04-thin90.a2m with 101 sequences, total weight= 25.3497 avg weight= 0.250987 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k8uA/info/1k8uA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k8uA/nostruct-align/1k8uA.t04-thin90.a2m.gz, have 104091 columns in 441 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ig0A/nostruct-align/1ig0A.t04-thin90.a2m.gz # 1ig0A.t04-thin90.a2m with 73 sequences, total weight= 73 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18075 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ig0A/info/1ig0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1ig0A/nostruct-align/1ig0A.t04-thin90.a2m.gz, have 104408 columns in 442 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fi2A/nostruct-align/1fi2A.t04-thin90.a2m.gz # 1fi2A.t04-thin90.a2m with 659 sequences, total weight= 659 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02192 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fi2A/info/1fi2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fi2A/nostruct-align/1fi2A.t04-thin90.a2m.gz, have 104609 columns in 443 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1ddwA/nostruct-align/1ddwA.t04-thin90.a2m.gz # 1ddwA.t04-thin90.a2m with 23 sequences, total weight= 8.3302 avg weight= 0.362183 22 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1ddwA/info/1ddwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1ddwA/nostruct-align/1ddwA.t04-thin90.a2m.gz, have 104720 columns in 444 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p1xA/nostruct-align/1p1xA.t04-thin90.a2m.gz # 1p1xA.t04-thin90.a2m with 135 sequences, total weight= 37.9191 avg weight= 0.280882 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p1xA/info/1p1xA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p1xA/nostruct-align/1p1xA.t04-thin90.a2m.gz, have 104970 columns in 445 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1ydyA/nostruct-align/1ydyA.t04-thin90.a2m.gz # 1ydyA.t04-thin90.a2m with 529 sequences, total weight= 529 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.992724 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1ydyA/info/1ydyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1ydyA/nostruct-align/1ydyA.t04-thin90.a2m.gz, have 105298 columns in 446 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kw4A/nostruct-align/1kw4A.t04-thin90.a2m.gz # 1kw4A.t04-thin90.a2m with 53 sequences, total weight= 10.5515 avg weight= 0.199085 33 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kw4A/info/1kw4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kw4A/nostruct-align/1kw4A.t04-thin90.a2m.gz, have 105368 columns in 447 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m4jA/nostruct-align/1m4jA.t04-thin90.a2m.gz # 1m4jA.t04-thin90.a2m with 137 sequences, total weight= 137 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.274 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m4jA/info/1m4jA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m4jA/nostruct-align/1m4jA.t04-thin90.a2m.gz, have 105501 columns in 448 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t6cA/nostruct-align/1t6cA.t04-thin90.a2m.gz # 1t6cA.t04-thin90.a2m with 1353 sequences, total weight= 1353 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06941 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t6cA/info/1t6cA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t6cA/nostruct-align/1t6cA.t04-thin90.a2m.gz, have 105807 columns in 449 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w27A/nostruct-align/1w27A.t04-thin90.a2m.gz # 1w27A.t04-thin90.a2m with 227 sequences, total weight= 37.3898 avg weight= 0.164713 42 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w27A/info/1w27A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w27A/nostruct-align/1w27A.t04-thin90.a2m.gz, have 106497 columns in 450 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o7nA/nostruct-align/1o7nA.t04-thin90.a2m.gz # 1o7nA.t04-thin90.a2m with 716 sequences, total weight= 716 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.945927 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o7nA/info/1o7nA.stride-mixed.near-backbone-11 WARNING: skipping h, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1o/1o7nA/nostruct-align/1o7nA.t04-thin90.a2m.gz, have 106944 columns in 451 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1ak0/nostruct-align/1ak0.t04-thin90.a2m.gz # 1ak0.t04-thin90.a2m with 55 sequences, total weight= 55 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23947 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1ak0/info/1ak0.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1ak0/nostruct-align/1ak0.t04-thin90.a2m.gz, have 107208 columns in 452 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/25/256bA/nostruct-align/256bA.t04-thin90.a2m.gz # 256bA.t04-thin90.a2m with 8 sequences, total weight= 5.63598 avg weight= 0.704498 15 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/25/256bA/info/256bA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/25/256bA/nostruct-align/256bA.t04-thin90.a2m.gz, have 107314 columns in 453 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q2hA/nostruct-align/1q2hA.t04-thin90.a2m.gz # 1q2hA.t04-thin90.a2m with 10 sequences, total weight= 5.08957 avg weight= 0.508957 18 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q2hA/info/1q2hA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q2hA/nostruct-align/1q2hA.t04-thin90.a2m.gz, have 107377 columns in 454 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h5qA/nostruct-align/1h5qA.t04-thin90.a2m.gz # 1h5qA.t04-thin90.a2m with 2367 sequences, total weight= 111.207 avg weight= 0.0469824 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32094 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h5qA/info/1h5qA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h5qA/nostruct-align/1h5qA.t04-thin90.a2m.gz, have 107637 columns in 455 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rgxA/nostruct-align/1rgxA.t04-thin90.a2m.gz # 1rgxA.t04-thin90.a2m with 14 sequences, total weight= 3.45256 avg weight= 0.246611 18 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rgxA/info/1rgxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rgxA/nostruct-align/1rgxA.t04-thin90.a2m.gz, have 107726 columns in 456 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tyv/nostruct-align/1tyv.t04-thin90.a2m.gz # 1tyv.t04-thin90.a2m with 4 sequences, total weight= 3.40661 avg weight= 0.851654 8 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tyv/info/1tyv.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tyv/nostruct-align/1tyv.t04-thin90.a2m.gz, have 108268 columns in 457 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tqhA/nostruct-align/1tqhA.t04-thin90.a2m.gz # 1tqhA.t04-thin90.a2m with 2345 sequences, total weight= 2345 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.863516 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tqhA/info/1tqhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tqhA/nostruct-align/1tqhA.t04-thin90.a2m.gz, have 108510 columns in 458 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fdr/nostruct-align/1fdr.t04-thin90.a2m.gz # 1fdr.t04-thin90.a2m with 1182 sequences, total weight= 1182 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02547 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fdr/info/1fdr.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fdr/nostruct-align/1fdr.t04-thin90.a2m.gz, have 108754 columns in 459 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1chd/nostruct-align/1chd.t04-thin90.a2m.gz # 1chd.t04-thin90.a2m with 184 sequences, total weight= 28.2402 avg weight= 0.15348 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1chd/info/1chd.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1chd/nostruct-align/1chd.t04-thin90.a2m.gz, have 108952 columns in 460 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a3c/nostruct-align/1a3c.t04-thin90.a2m.gz # 1a3c.t04-thin90.a2m with 648 sequences, total weight= 648 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06536 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a3c/info/1a3c.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1a3c/nostruct-align/1a3c.t04-thin90.a2m.gz, have 109118 columns in 461 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fyeA/nostruct-align/1fyeA.t04-thin90.a2m.gz # 1fyeA.t04-thin90.a2m with 181 sequences, total weight= 181 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0903 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fyeA/info/1fyeA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fyeA/nostruct-align/1fyeA.t04-thin90.a2m.gz, have 109338 columns in 462 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ia8A/nostruct-align/1ia8A.t04-thin90.a2m.gz # 1ia8A.t04-thin90.a2m with 1146 sequences, total weight= 52.2939 avg weight= 0.0456317 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30439 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ia8A/info/1ia8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1ia8A/nostruct-align/1ia8A.t04-thin90.a2m.gz, have 109610 columns in 463 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k5nA/nostruct-align/1k5nA.t04-thin90.a2m.gz # 1k5nA.t04-thin90.a2m with 580 sequences, total weight= 14.5884 avg weight= 0.0251525 36 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k5nA/info/1k5nA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k5nA/nostruct-align/1k5nA.t04-thin90.a2m.gz, have 109886 columns in 464 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hfuA/nostruct-align/1hfuA.t04-thin90.a2m.gz # 1hfuA.t04-thin90.a2m with 688 sequences, total weight= 688 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11392 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hfuA/info/1hfuA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hfuA/nostruct-align/1hfuA.t04-thin90.a2m.gz, have 110386 columns in 465 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1ym3A/nostruct-align/1ym3A.t04-thin90.a2m.gz # 1ym3A.t04-thin90.a2m with 306 sequences, total weight= 150.428 avg weight= 0.491594 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3048 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1ym3A/info/1ym3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1ym3A/nostruct-align/1ym3A.t04-thin90.a2m.gz, have 110579 columns in 466 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e30A/nostruct-align/1e30A.t04-thin90.a2m.gz # 1e30A.t04-thin90.a2m with 256 sequences, total weight= 256 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01681 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e30A/info/1e30A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e30A/nostruct-align/1e30A.t04-thin90.a2m.gz, have 110732 columns in 467 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rttA/nostruct-align/1rttA.t04-thin90.a2m.gz # 1rttA.t04-thin90.a2m with 904 sequences, total weight= 904 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.948233 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rttA/info/1rttA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rttA/nostruct-align/1rttA.t04-thin90.a2m.gz, have 110906 columns in 468 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fl0A/nostruct-align/1fl0A.t04-thin90.a2m.gz # 1fl0A.t04-thin90.a2m with 325 sequences, total weight= 94.1767 avg weight= 0.289775 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30148 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fl0A/info/1fl0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fl0A/nostruct-align/1fl0A.t04-thin90.a2m.gz, have 111070 columns in 469 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tovA/nostruct-align/1tovA.t04-thin90.a2m.gz # 1tovA.t04-thin90.a2m with 174 sequences, total weight= 59.9644 avg weight= 0.344623 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30135 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tovA/info/1tovA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tovA/nostruct-align/1tovA.t04-thin90.a2m.gz, have 111167 columns in 470 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dqeA/nostruct-align/1dqeA.t04-thin90.a2m.gz # 1dqeA.t04-thin90.a2m with 77 sequences, total weight= 77 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28795 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dqeA/info/1dqeA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dqeA/nostruct-align/1dqeA.t04-thin90.a2m.gz, have 111304 columns in 471 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i0lA/nostruct-align/1i0lA.t04-thin90.a2m.gz # 1i0lA.t04-thin90.a2m with 1540 sequences, total weight= 1540 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.981066 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i0lA/info/1i0lA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i0lA/nostruct-align/1i0lA.t04-thin90.a2m.gz, have 111496 columns in 472 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fcyA/nostruct-align/1fcyA.t04-thin90.a2m.gz # 1fcyA.t04-thin90.a2m with 960 sequences, total weight= 960 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.847299 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fcyA/info/1fcyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fcyA/nostruct-align/1fcyA.t04-thin90.a2m.gz, have 111732 columns in 473 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nox/nostruct-align/1nox.t04-thin90.a2m.gz # 1nox.t04-thin90.a2m with 579 sequences, total weight= 579 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.983004 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nox/info/1nox.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nox/nostruct-align/1nox.t04-thin90.a2m.gz, have 111932 columns in 474 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ug4A/nostruct-align/1ug4A.t04-thin90.a2m.gz # 1ug4A.t04-thin90.a2m with 149 sequences, total weight= 15.0079 avg weight= 0.100724 44 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ug4A/info/1ug4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ug4A/nostruct-align/1ug4A.t04-thin90.a2m.gz, have 111992 columns in 475 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1onwA/nostruct-align/1onwA.t04-thin90.a2m.gz # 1onwA.t04-thin90.a2m with 1345 sequences, total weight= 1345 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.888098 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1onwA/info/1onwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1onwA/nostruct-align/1onwA.t04-thin90.a2m.gz, have 112368 columns in 476 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t0pB/nostruct-align/1t0pB.t04-thin90.a2m.gz # 1t0pB.t04-thin90.a2m with 32 sequences, total weight= 11.3745 avg weight= 0.355452 28 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t0pB/info/1t0pB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t0pB/nostruct-align/1t0pB.t04-thin90.a2m.gz, have 112454 columns in 477 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ijqA/nostruct-align/1ijqA.t04-thin90.a2m.gz # 1ijqA.t04-thin90.a2m with 1633 sequences, total weight= 1633 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.836217 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ijqA/info/1ijqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1ijqA/nostruct-align/1ijqA.t04-thin90.a2m.gz, have 112762 columns in 478 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e1hA/nostruct-align/1e1hA.t04-thin90.a2m.gz # 1e1hA.t04-thin90.a2m with 18 sequences, total weight= 7.57723 avg weight= 0.420957 22 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e1hA/info/1e1hA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e1hA/nostruct-align/1e1hA.t04-thin90.a2m.gz, have 112997 columns in 479 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nepA/nostruct-align/1nepA.t04-thin90.a2m.gz # 1nepA.t04-thin90.a2m with 60 sequences, total weight= 60 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26609 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nepA/info/1nepA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nepA/nostruct-align/1nepA.t04-thin90.a2m.gz, have 113127 columns in 480 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w41A/nostruct-align/1w41A.t04-thin90.a2m.gz # 1w41A.t04-thin90.a2m with 279 sequences, total weight= 133.803 avg weight= 0.479582 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30354 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w41A/info/1w41A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w41A/nostruct-align/1w41A.t04-thin90.a2m.gz, have 113226 columns in 481 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s2wA/nostruct-align/1s2wA.t04-thin90.a2m.gz # 1s2wA.t04-thin90.a2m with 368 sequences, total weight= 196.778 avg weight= 0.534724 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30523 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s2wA/info/1s2wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1s2wA/nostruct-align/1s2wA.t04-thin90.a2m.gz, have 113484 columns in 482 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u60A/nostruct-align/1u60A.t04-thin90.a2m.gz # 1u60A.t04-thin90.a2m with 94 sequences, total weight= 22.4168 avg weight= 0.238476 39 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u60A/info/1u60A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1u60A/nostruct-align/1u60A.t04-thin90.a2m.gz, have 113793 columns in 483 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jg1A/nostruct-align/1jg1A.t04-thin90.a2m.gz # 1jg1A.t04-thin90.a2m with 2314 sequences, total weight= 2314 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.78876 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jg1A/info/1jg1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jg1A/nostruct-align/1jg1A.t04-thin90.a2m.gz, have 114008 columns in 484 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f3uB/nostruct-align/1f3uB.t04-thin90.a2m.gz # 1f3uB.t04-thin90.a2m with 8 sequences, total weight= 4.72303 avg weight= 0.590379 15 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f3uB/info/1f3uB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f3uB/nostruct-align/1f3uB.t04-thin90.a2m.gz, have 114147 columns in 485 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mxiA/nostruct-align/1mxiA.t04-thin90.a2m.gz # 1mxiA.t04-thin90.a2m with 584 sequences, total weight= 584 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27087 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mxiA/info/1mxiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mxiA/nostruct-align/1mxiA.t04-thin90.a2m.gz, have 114303 columns in 486 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tbfA/nostruct-align/1tbfA.t04-thin90.a2m.gz # 1tbfA.t04-thin90.a2m with 177 sequences, total weight= 60.8649 avg weight= 0.34387 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30043 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tbfA/info/1tbfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tbfA/nostruct-align/1tbfA.t04-thin90.a2m.gz, have 114629 columns in 487 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rh6A/nostruct-align/1rh6A.t04-thin90.a2m.gz # 1rh6A.t04-thin90.a2m with 5 sequences, total weight= 4.48537 avg weight= 0.897074 14 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rh6A/info/1rh6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rh6A/nostruct-align/1rh6A.t04-thin90.a2m.gz, have 114684 columns in 488 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jfxA/nostruct-align/1jfxA.t04-thin90.a2m.gz # 1jfxA.t04-thin90.a2m with 133 sequences, total weight= 133 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20338 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jfxA/info/1jfxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jfxA/nostruct-align/1jfxA.t04-thin90.a2m.gz, have 114901 columns in 489 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j79A/nostruct-align/1j79A.t04-thin90.a2m.gz # 1j79A.t04-thin90.a2m with 604 sequences, total weight= 604 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.968897 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j79A/info/1j79A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j79A/nostruct-align/1j79A.t04-thin90.a2m.gz, have 115244 columns in 490 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o9wA/nostruct-align/1o9wA.t04-thin90.a2m.gz # 1o9wA.t04-thin90.a2m with 2 sequences, total weight= 1.88352 avg weight= 0.94176 6 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o9wA/info/1o9wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o9wA/nostruct-align/1o9wA.t04-thin90.a2m.gz, have 115413 columns in 491 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m70A/nostruct-align/1m70A.t04-thin90.a2m.gz # 1m70A.t04-thin90.a2m with 834 sequences, total weight= 834 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.971826 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m70A/info/1m70A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m70A/nostruct-align/1m70A.t04-thin90.a2m.gz, have 115603 columns in 492 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pxzA/nostruct-align/1pxzA.t04-thin90.a2m.gz # 1pxzA.t04-thin90.a2m with 212 sequences, total weight= 212 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22066 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pxzA/info/1pxzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pxzA/nostruct-align/1pxzA.t04-thin90.a2m.gz, have 115949 columns in 493 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vmbA/nostruct-align/1vmbA.t04-thin90.a2m.gz # 1vmbA.t04-thin90.a2m with 178 sequences, total weight= 122.976 avg weight= 0.690879 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3012 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vmbA/info/1vmbA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vmbA/nostruct-align/1vmbA.t04-thin90.a2m.gz, have 116056 columns in 494 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bjuA/nostruct-align/2bjuA.t04-thin90.a2m.gz # 2bjuA.t04-thin90.a2m with 937 sequences, total weight= 937 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23459 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bjuA/info/2bjuA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2b/2bjuA/nostruct-align/2bjuA.t04-thin90.a2m.gz, have 116385 columns in 495 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lq9A/nostruct-align/1lq9A.t04-thin90.a2m.gz # 1lq9A.t04-thin90.a2m with 45 sequences, total weight= 45 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15143 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lq9A/info/1lq9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lq9A/nostruct-align/1lq9A.t04-thin90.a2m.gz, have 116497 columns in 496 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p90A/nostruct-align/1p90A.t04-thin90.a2m.gz # 1p90A.t04-thin90.a2m with 158 sequences, total weight= 158 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1653 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p90A/info/1p90A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p90A/nostruct-align/1p90A.t04-thin90.a2m.gz, have 116620 columns in 497 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1z/1zin/nostruct-align/1zin.t04-thin90.a2m.gz # 1zin.t04-thin90.a2m with 1938 sequences, total weight= 1938 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.853582 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1z/1zin/info/1zin.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1z/1zin/nostruct-align/1zin.t04-thin90.a2m.gz, have 116837 columns in 498 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l5oA/nostruct-align/1l5oA.t04-thin90.a2m.gz # 1l5oA.t04-thin90.a2m with 108 sequences, total weight= 39.7763 avg weight= 0.368299 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l5oA/info/1l5oA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1l5oA/nostruct-align/1l5oA.t04-thin90.a2m.gz, have 117183 columns in 499 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qddA/nostruct-align/1qddA.t04-thin90.a2m.gz # 1qddA.t04-thin90.a2m with 1321 sequences, total weight= 1321 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.973046 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qddA/info/1qddA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qddA/nostruct-align/1qddA.t04-thin90.a2m.gz, have 117327 columns in 500 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jhfA/nostruct-align/1jhfA.t04-thin90.a2m.gz # 1jhfA.t04-thin90.a2m with 335 sequences, total weight= 335 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04928 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jhfA/info/1jhfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jhfA/nostruct-align/1jhfA.t04-thin90.a2m.gz, have 117524 columns in 501 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d4aA/nostruct-align/1d4aA.t04-thin90.a2m.gz # 1d4aA.t04-thin90.a2m with 755 sequences, total weight= 755 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07429 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d4aA/info/1d4aA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d4aA/nostruct-align/1d4aA.t04-thin90.a2m.gz, have 117797 columns in 502 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rgzA/nostruct-align/1rgzA.t04-thin90.a2m.gz # 1rgzA.t04-thin90.a2m with 572 sequences, total weight= 572 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.994278 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rgzA/info/1rgzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rgzA/nostruct-align/1rgzA.t04-thin90.a2m.gz, have 118160 columns in 503 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s3eA/nostruct-align/1s3eA.t04-thin90.a2m.gz # 1s3eA.t04-thin90.a2m with 2104 sequences, total weight= 2104 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.926129 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s3eA/info/1s3eA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1s3eA/nostruct-align/1s3eA.t04-thin90.a2m.gz, have 118659 columns in 504 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tn6B/nostruct-align/1tn6B.t04-thin90.a2m.gz # 1tn6B.t04-thin90.a2m with 548 sequences, total weight= 548 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00231 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tn6B/info/1tn6B.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tn6B/nostruct-align/1tn6B.t04-thin90.a2m.gz, have 119069 columns in 505 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h80A/nostruct-align/1h80A.t04-thin90.a2m.gz # 1h80A.t04-thin90.a2m with 541 sequences, total weight= 541 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.930057 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h80A/info/1h80A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h80A/nostruct-align/1h80A.t04-thin90.a2m.gz, have 119502 columns in 506 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sqsA/nostruct-align/1sqsA.t04-thin90.a2m.gz # 1sqsA.t04-thin90.a2m with 896 sequences, total weight= 896 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.994217 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sqsA/info/1sqsA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sqsA/nostruct-align/1sqsA.t04-thin90.a2m.gz, have 119734 columns in 507 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ix9A/nostruct-align/1ix9A.t04-thin90.a2m.gz # 1ix9A.t04-thin90.a2m with 466 sequences, total weight= 27.2267 avg weight= 0.0584265 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ix9A/info/1ix9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1ix9A/nostruct-align/1ix9A.t04-thin90.a2m.gz, have 119939 columns in 508 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n97A/nostruct-align/1n97A.t04-thin90.a2m.gz # 1n97A.t04-thin90.a2m with 1813 sequences, total weight= 1813 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18967 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n97A/info/1n97A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n97A/nostruct-align/1n97A.t04-thin90.a2m.gz, have 120324 columns in 509 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ornA/nostruct-align/1ornA.t04-thin90.a2m.gz # 1ornA.t04-thin90.a2m with 536 sequences, total weight= 536 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1297 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ornA/info/1ornA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ornA/nostruct-align/1ornA.t04-thin90.a2m.gz, have 120538 columns in 510 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pkhA/nostruct-align/1pkhA.t04-thin90.a2m.gz # 1pkhA.t04-thin90.a2m with 396 sequences, total weight= 396 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19731 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pkhA/info/1pkhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pkhA/nostruct-align/1pkhA.t04-thin90.a2m.gz, have 120720 columns in 511 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o5kA/nostruct-align/1o5kA.t04-thin90.a2m.gz # 1o5kA.t04-thin90.a2m with 476 sequences, total weight= 476 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22444 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o5kA/info/1o5kA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o5kA/nostruct-align/1o5kA.t04-thin90.a2m.gz, have 121015 columns in 512 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xg0A/nostruct-align/1xg0A.t04-thin90.a2m.gz # 1xg0A.t04-thin90.a2m with 7 sequences, total weight= 4.64674 avg weight= 0.66382 13 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xg0A/info/1xg0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xg0A/nostruct-align/1xg0A.t04-thin90.a2m.gz, have 121091 columns in 513 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kqrA/nostruct-align/1kqrA.t04-thin90.a2m.gz # 1kqrA.t04-thin90.a2m with 43 sequences, total weight= 6.77192 avg weight= 0.157486 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kqrA/info/1kqrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kqrA/nostruct-align/1kqrA.t04-thin90.a2m.gz, have 121251 columns in 514 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bjvA/nostruct-align/2bjvA.t04-thin90.a2m.gz # 2bjvA.t04-thin90.a2m with 2297 sequences, total weight= 187.908 avg weight= 0.0818059 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.33567 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bjvA/info/2bjvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2b/2bjvA/nostruct-align/2bjvA.t04-thin90.a2m.gz, have 121487 columns in 515 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xeoA/nostruct-align/1xeoA.t04-thin90.a2m.gz # 1xeoA.t04-thin90.a2m with 318 sequences, total weight= 38.7159 avg weight= 0.121748 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30047 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xeoA/info/1xeoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xeoA/nostruct-align/1xeoA.t04-thin90.a2m.gz, have 121652 columns in 516 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tif/nostruct-align/1tif.t04-thin90.a2m.gz # 1tif.t04-thin90.a2m with 129 sequences, total weight= 9.6067 avg weight= 0.0744705 32 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tif/info/1tif.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tif/nostruct-align/1tif.t04-thin90.a2m.gz, have 121728 columns in 517 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dqpA/nostruct-align/1dqpA.t04-thin90.a2m.gz # 1dqpA.t04-thin90.a2m with 1383 sequences, total weight= 1383 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00156 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dqpA/info/1dqpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dqpA/nostruct-align/1dqpA.t04-thin90.a2m.gz, have 121958 columns in 518 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nn5A/nostruct-align/1nn5A.t04-thin90.a2m.gz # 1nn5A.t04-thin90.a2m with 2219 sequences, total weight= 2219 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2373 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nn5A/info/1nn5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nn5A/nostruct-align/1nn5A.t04-thin90.a2m.gz, have 122162 columns in 519 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1z/1z2uA/nostruct-align/1z2uA.t04-thin90.a2m.gz # 1z2uA.t04-thin90.a2m with 812 sequences, total weight= 456.443 avg weight= 0.562122 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3106 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1z/1z2uA/info/1z2uA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1z/1z2uA/nostruct-align/1z2uA.t04-thin90.a2m.gz, have 122312 columns in 520 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ucrA/nostruct-align/1ucrA.t04-thin90.a2m.gz # 1ucrA.t04-thin90.a2m with 11 sequences, total weight= 5.67841 avg weight= 0.516219 18 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ucrA/info/1ucrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ucrA/nostruct-align/1ucrA.t04-thin90.a2m.gz, have 122386 columns in 521 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q7lB/nostruct-align/1q7lB.t04-thin90.a2m.gz # 1q7lB.t04-thin90.a2m with 23 sequences, total weight= 4.40839 avg weight= 0.191669 21 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q7lB/info/1q7lB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q7lB/nostruct-align/1q7lB.t04-thin90.a2m.gz, have 122474 columns in 522 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s95A/nostruct-align/1s95A.t04-thin90.a2m.gz # 1s95A.t04-thin90.a2m with 770 sequences, total weight= 770 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05906 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s95A/info/1s95A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1s95A/nostruct-align/1s95A.t04-thin90.a2m.gz, have 122798 columns in 523 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2a/2a0b/nostruct-align/2a0b.t04-thin90.a2m.gz # 2a0b.t04-thin90.a2m with 15 sequences, total weight= 8.11686 avg weight= 0.541124 23 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2a/2a0b/info/2a0b.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2a/2a0b/nostruct-align/2a0b.t04-thin90.a2m.gz, have 122916 columns in 524 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t2dA/nostruct-align/1t2dA.t04-thin90.a2m.gz # 1t2dA.t04-thin90.a2m with 1053 sequences, total weight= 1053 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02953 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t2dA/info/1t2dA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t2dA/nostruct-align/1t2dA.t04-thin90.a2m.gz, have 123231 columns in 525 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rg8A/nostruct-align/1rg8A.t04-thin90.a2m.gz # 1rg8A.t04-thin90.a2m with 179 sequences, total weight= 93.8114 avg weight= 0.524086 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30105 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rg8A/info/1rg8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rg8A/nostruct-align/1rg8A.t04-thin90.a2m.gz, have 123372 columns in 526 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1guqA/nostruct-align/1guqA.t04-thin90.a2m.gz # 1guqA.t04-thin90.a2m with 441 sequences, total weight= 441 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19308 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1guqA/info/1guqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1guqA/nostruct-align/1guqA.t04-thin90.a2m.gz, have 123719 columns in 527 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1go3F/nostruct-align/1go3F.t04-thin90.a2m.gz # 1go3F.t04-thin90.a2m with 21 sequences, total weight= 17.1443 avg weight= 0.816396 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1go3F/info/1go3F.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1go3F/nostruct-align/1go3F.t04-thin90.a2m.gz, have 123826 columns in 528 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2blnA/nostruct-align/2blnA.t04-thin90.a2m.gz # 2blnA.t04-thin90.a2m with 683 sequences, total weight= 683 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27275 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2blnA/info/2blnA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2b/2blnA/nostruct-align/2blnA.t04-thin90.a2m.gz, have 124124 columns in 529 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1ju3A/nostruct-align/1ju3A.t04-thin90.a2m.gz # 1ju3A.t04-thin90.a2m with 2373 sequences, total weight= 2373 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.960589 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1ju3A/info/1ju3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1ju3A/nostruct-align/1ju3A.t04-thin90.a2m.gz, have 124694 columns in 530 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rcqA/nostruct-align/1rcqA.t04-thin90.a2m.gz # 1rcqA.t04-thin90.a2m with 783 sequences, total weight= 783 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08471 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rcqA/info/1rcqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rcqA/nostruct-align/1rcqA.t04-thin90.a2m.gz, have 125051 columns in 531 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q6oA/nostruct-align/1q6oA.t04-thin90.a2m.gz # 1q6oA.t04-thin90.a2m with 953 sequences, total weight= 953 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01359 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q6oA/info/1q6oA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q6oA/nostruct-align/1q6oA.t04-thin90.a2m.gz, have 125264 columns in 532 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pe9A/nostruct-align/1pe9A.t04-thin90.a2m.gz # 1pe9A.t04-thin90.a2m with 175 sequences, total weight= 147.883 avg weight= 0.845048 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30039 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pe9A/info/1pe9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pe9A/nostruct-align/1pe9A.t04-thin90.a2m.gz, have 125625 columns in 533 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2a/2ayh/nostruct-align/2ayh.t04-thin90.a2m.gz # 2ayh.t04-thin90.a2m with 381 sequences, total weight= 381 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10455 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2a/2ayh/info/2ayh.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2a/2ayh/nostruct-align/2ayh.t04-thin90.a2m.gz, have 125839 columns in 534 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qqqA/nostruct-align/1qqqA.t04-thin90.a2m.gz # 1qqqA.t04-thin90.a2m with 192 sequences, total weight= 34.7386 avg weight= 0.18093 44 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qqqA/info/1qqqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qqqA/nostruct-align/1qqqA.t04-thin90.a2m.gz, have 126103 columns in 535 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ucdA/nostruct-align/1ucdA.t04-thin90.a2m.gz # 1ucdA.t04-thin90.a2m with 454 sequences, total weight= 112.92 avg weight= 0.248722 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30467 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ucdA/info/1ucdA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ucdA/nostruct-align/1ucdA.t04-thin90.a2m.gz, have 126293 columns in 536 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xqoA/nostruct-align/1xqoA.t04-thin90.a2m.gz # 1xqoA.t04-thin90.a2m with 10 sequences, total weight= 10 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29934 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xqoA/info/1xqoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xqoA/nostruct-align/1xqoA.t04-thin90.a2m.gz, have 126546 columns in 537 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w99A/nostruct-align/1w99A.t04-thin90.a2m.gz # 1w99A.t04-thin90.a2m with 123 sequences, total weight= 123 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2507 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w99A/info/1w99A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w99A/nostruct-align/1w99A.t04-thin90.a2m.gz, have 127104 columns in 538 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o6sB/nostruct-align/1o6sB.t04-thin90.a2m.gz # 1o6sB.t04-thin90.a2m with 2581 sequences, total weight= 2581 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18971 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o6sB/info/1o6sB.stride-mixed.near-backbone-11 WARNING: skipping a, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1o/1o6sB/nostruct-align/1o6sB.t04-thin90.a2m.gz, have 127208 columns in 539 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jigA/nostruct-align/1jigA.t04-thin90.a2m.gz # 1jigA.t04-thin90.a2m with 247 sequences, total weight= 247 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25343 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jigA/info/1jigA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jigA/nostruct-align/1jigA.t04-thin90.a2m.gz, have 127354 columns in 540 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g8kA/nostruct-align/1g8kA.t04-thin90.a2m.gz # 1g8kA.t04-thin90.a2m with 780 sequences, total weight= 780 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11527 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g8kA/info/1g8kA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g8kA/nostruct-align/1g8kA.t04-thin90.a2m.gz, have 128176 columns in 541 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qwyA/nostruct-align/1qwyA.t04-thin90.a2m.gz # 1qwyA.t04-thin90.a2m with 790 sequences, total weight= 790 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.987551 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qwyA/info/1qwyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qwyA/nostruct-align/1qwyA.t04-thin90.a2m.gz, have 128410 columns in 542 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r26A/nostruct-align/1r26A.t04-thin90.a2m.gz # 1r26A.t04-thin90.a2m with 2123 sequences, total weight= 2123 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.922131 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r26A/info/1r26A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r26A/nostruct-align/1r26A.t04-thin90.a2m.gz, have 128523 columns in 543 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vioA/nostruct-align/1vioA.t04-thin90.a2m.gz # 1vioA.t04-thin90.a2m with 770 sequences, total weight= 770 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24474 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vioA/info/1vioA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vioA/nostruct-align/1vioA.t04-thin90.a2m.gz, have 128753 columns in 544 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i0vA/nostruct-align/1i0vA.t04-thin90.a2m.gz # 1i0vA.t04-thin90.a2m with 24 sequences, total weight= 8.36806 avg weight= 0.348669 25 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i0vA/info/1i0vA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i0vA/nostruct-align/1i0vA.t04-thin90.a2m.gz, have 128857 columns in 545 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3b/3bamA/nostruct-align/3bamA.t04-thin90.a2m.gz # 3bamA.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.92117 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3b/3bamA/info/3bamA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/3b/3bamA/nostruct-align/3bamA.t04-thin90.a2m.gz, have 129063 columns in 546 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iq4A/nostruct-align/1iq4A.t04-thin90.a2m.gz # 1iq4A.t04-thin90.a2m with 241 sequences, total weight= 36.8987 avg weight= 0.153107 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iq4A/info/1iq4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iq4A/nostruct-align/1iq4A.t04-thin90.a2m.gz, have 129242 columns in 547 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gyxA/nostruct-align/1gyxA.t04-thin90.a2m.gz # 1gyxA.t04-thin90.a2m with 4 sequences, total weight= 4 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23741 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gyxA/info/1gyxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gyxA/nostruct-align/1gyxA.t04-thin90.a2m.gz, have 129318 columns in 548 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o9rA/nostruct-align/1o9rA.t04-thin90.a2m.gz # 1o9rA.t04-thin90.a2m with 257 sequences, total weight= 257 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18633 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o9rA/info/1o9rA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o9rA/nostruct-align/1o9rA.t04-thin90.a2m.gz, have 129480 columns in 549 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i60A/nostruct-align/1i60A.t04-thin90.a2m.gz # 1i60A.t04-thin90.a2m with 673 sequences, total weight= 673 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.87493 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i60A/info/1i60A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i60A/nostruct-align/1i60A.t04-thin90.a2m.gz, have 129758 columns in 550 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t1dA/nostruct-align/1t1dA.t04-thin90.a2m.gz # 1t1dA.t04-thin90.a2m with 194 sequences, total weight= 51.6183 avg weight= 0.266074 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30148 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t1dA/info/1t1dA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t1dA/nostruct-align/1t1dA.t04-thin90.a2m.gz, have 129858 columns in 551 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kkoA/nostruct-align/1kkoA.t04-thin90.a2m.gz # 1kkoA.t04-thin90.a2m with 718 sequences, total weight= 718 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20965 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kkoA/info/1kkoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kkoA/nostruct-align/1kkoA.t04-thin90.a2m.gz, have 130269 columns in 552 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bhuA/nostruct-align/2bhuA.t04-thin90.a2m.gz # 2bhuA.t04-thin90.a2m with 1563 sequences, total weight= 1563 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.983026 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bhuA/info/2bhuA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2b/2bhuA/nostruct-align/2bhuA.t04-thin90.a2m.gz, have 130849 columns in 553 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sauA/nostruct-align/1sauA.t04-thin90.a2m.gz # 1sauA.t04-thin90.a2m with 53 sequences, total weight= 15.2838 avg weight= 0.288374 34 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sauA/info/1sauA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sauA/nostruct-align/1sauA.t04-thin90.a2m.gz, have 130963 columns in 554 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r4pA/nostruct-align/1r4pA.t04-thin90.a2m.gz # 1r4pA.t04-thin90.a2m with 117 sequences, total weight= 117 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25727 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r4pA/info/1r4pA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r4pA/nostruct-align/1r4pA.t04-thin90.a2m.gz, have 131244 columns in 555 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s1dA/nostruct-align/1s1dA.t04-thin90.a2m.gz # 1s1dA.t04-thin90.a2m with 18 sequences, total weight= 6.19174 avg weight= 0.343986 21 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s1dA/info/1s1dA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1s1dA/nostruct-align/1s1dA.t04-thin90.a2m.gz, have 131561 columns in 556 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y81A/nostruct-align/1y81A.t04-thin90.a2m.gz # 1y81A.t04-thin90.a2m with 348 sequences, total weight= 64.335 avg weight= 0.184871 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3011 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y81A/info/1y81A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1y81A/nostruct-align/1y81A.t04-thin90.a2m.gz, have 131677 columns in 557 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gca/nostruct-align/1gca.t04-thin90.a2m.gz # 1gca.t04-thin90.a2m with 1326 sequences, total weight= 1326 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.971843 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gca/info/1gca.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gca/nostruct-align/1gca.t04-thin90.a2m.gz, have 131986 columns in 558 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3e/3eipA/nostruct-align/3eipA.t04-thin90.a2m.gz # 3eipA.t04-thin90.a2m with 7 sequences, total weight= 2.7786 avg weight= 0.396943 12 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3e/3eipA/info/3eipA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/3e/3eipA/nostruct-align/3eipA.t04-thin90.a2m.gz, have 132070 columns in 559 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vlaA/nostruct-align/1vlaA.t04-thin90.a2m.gz # 1vlaA.t04-thin90.a2m with 291 sequences, total weight= 291 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16968 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vlaA/info/1vlaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vlaA/nostruct-align/1vlaA.t04-thin90.a2m.gz, have 132214 columns in 560 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mfmA/nostruct-align/1mfmA.t04-thin90.a2m.gz # 1mfmA.t04-thin90.a2m with 321 sequences, total weight= 47.6149 avg weight= 0.148333 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mfmA/info/1mfmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mfmA/nostruct-align/1mfmA.t04-thin90.a2m.gz, have 132367 columns in 561 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1ks9A/nostruct-align/1ks9A.t04-thin90.a2m.gz # 1ks9A.t04-thin90.a2m with 2104 sequences, total weight= 2104 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.868252 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1ks9A/info/1ks9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1ks9A/nostruct-align/1ks9A.t04-thin90.a2m.gz, have 132658 columns in 562 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1whi/nostruct-align/1whi.t04-thin90.a2m.gz # 1whi.t04-thin90.a2m with 213 sequences, total weight= 17.1383 avg weight= 0.0804614 37 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1whi/info/1whi.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1whi/nostruct-align/1whi.t04-thin90.a2m.gz, have 132780 columns in 563 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1ayl/nostruct-align/1ayl.t04-thin90.a2m.gz # 1ayl.t04-thin90.a2m with 164 sequences, total weight= 36.4248 avg weight= 0.222102 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1ayl/info/1ayl.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1ayl/nostruct-align/1ayl.t04-thin90.a2m.gz, have 133312 columns in 564 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vns/nostruct-align/1vns.t04-thin90.a2m.gz # 1vns.t04-thin90.a2m with 21 sequences, total weight= 21 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17149 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vns/info/1vns.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vns/nostruct-align/1vns.t04-thin90.a2m.gz, have 133886 columns in 565 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q1fA/nostruct-align/1q1fA.t04-thin90.a2m.gz # 1q1fA.t04-thin90.a2m with 838 sequences, total weight= 838 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22327 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q1fA/info/1q1fA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q1fA/nostruct-align/1q1fA.t04-thin90.a2m.gz, have 134034 columns in 566 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/5n/5nul/nostruct-align/5nul.t04-thin90.a2m.gz # 5nul.t04-thin90.a2m with 771 sequences, total weight= 771 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00326 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/5n/5nul/info/5nul.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/5n/5nul/nostruct-align/5nul.t04-thin90.a2m.gz, have 134172 columns in 567 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fiuA/nostruct-align/1fiuA.t04-thin90.a2m.gz # 1fiuA.t04-thin90.a2m with 3 sequences, total weight= 2.36271 avg weight= 0.787571 9 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fiuA/info/1fiuA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fiuA/nostruct-align/1fiuA.t04-thin90.a2m.gz, have 134458 columns in 568 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pfvA/nostruct-align/1pfvA.t04-thin90.a2m.gz # 1pfvA.t04-thin90.a2m with 1736 sequences, total weight= 1736 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.023 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pfvA/info/1pfvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pfvA/nostruct-align/1pfvA.t04-thin90.a2m.gz, have 135005 columns in 569 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1orc/nostruct-align/1orc.t04-thin90.a2m.gz # 1orc.t04-thin90.a2m with 3 sequences, total weight= 2.90429 avg weight= 0.968096 7 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1orc/info/1orc.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1orc/nostruct-align/1orc.t04-thin90.a2m.gz, have 135069 columns in 570 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mhnA/nostruct-align/1mhnA.t04-thin90.a2m.gz # 1mhnA.t04-thin90.a2m with 45 sequences, total weight= 15.2856 avg weight= 0.33968 35 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mhnA/info/1mhnA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mhnA/nostruct-align/1mhnA.t04-thin90.a2m.gz, have 135128 columns in 571 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1csh/nostruct-align/1csh.t04-thin90.a2m.gz # 1csh.t04-thin90.a2m with 331 sequences, total weight= 116.413 avg weight= 0.3517 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30207 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1csh/info/1csh.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1csh/nostruct-align/1csh.t04-thin90.a2m.gz, have 135563 columns in 572 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t1jA/nostruct-align/1t1jA.t04-thin90.a2m.gz # 1t1jA.t04-thin90.a2m with 2 sequences, total weight= 1.93044 avg weight= 0.965221 7 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t1jA/info/1t1jA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t1jA/nostruct-align/1t1jA.t04-thin90.a2m.gz, have 135682 columns in 573 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rl0A/nostruct-align/1rl0A.t04-thin90.a2m.gz # 1rl0A.t04-thin90.a2m with 135 sequences, total weight= 135 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23939 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rl0A/info/1rl0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rl0A/nostruct-align/1rl0A.t04-thin90.a2m.gz, have 135937 columns in 574 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d2nA/nostruct-align/1d2nA.t04-thin90.a2m.gz # 1d2nA.t04-thin90.a2m with 2291 sequences, total weight= 2291 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14787 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d2nA/info/1d2nA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d2nA/nostruct-align/1d2nA.t04-thin90.a2m.gz, have 136183 columns in 575 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e4cP/nostruct-align/1e4cP.t04-thin90.a2m.gz # 1e4cP.t04-thin90.a2m with 305 sequences, total weight= 305 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18865 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e4cP/info/1e4cP.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e4cP/nostruct-align/1e4cP.t04-thin90.a2m.gz, have 136389 columns in 576 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ogqA/nostruct-align/1ogqA.t04-thin90.a2m.gz # 1ogqA.t04-thin90.a2m with 2752 sequences, total weight= 2752 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00533 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ogqA/info/1ogqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ogqA/nostruct-align/1ogqA.t04-thin90.a2m.gz, have 136702 columns in 577 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v6sA/nostruct-align/1v6sA.t04-thin90.a2m.gz # 1v6sA.t04-thin90.a2m with 288 sequences, total weight= 14.0287 avg weight= 0.0487106 38 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v6sA/info/1v6sA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v6sA/nostruct-align/1v6sA.t04-thin90.a2m.gz, have 137092 columns in 578 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1njhA/nostruct-align/1njhA.t04-thin90.a2m.gz # 1njhA.t04-thin90.a2m with 7 sequences, total weight= 3.2216 avg weight= 0.460228 15 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1njhA/info/1njhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1njhA/nostruct-align/1njhA.t04-thin90.a2m.gz, have 137200 columns in 579 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xfsA/nostruct-align/1xfsA.t04-thin90.a2m.gz # 1xfsA.t04-thin90.a2m with 371 sequences, total weight= 371 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.865264 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xfsA/info/1xfsA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xfsA/nostruct-align/1xfsA.t04-thin90.a2m.gz, have 137354 columns in 580 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vr9A/nostruct-align/1vr9A.t04-thin90.a2m.gz # 1vr9A.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.86108 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vr9A/info/1vr9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vr9A/nostruct-align/1vr9A.t04-thin90.a2m.gz, have 137475 columns in 581 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sfxA/nostruct-align/1sfxA.t04-thin90.a2m.gz # 1sfxA.t04-thin90.a2m with 49 sequences, total weight= 49 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27782 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sfxA/info/1sfxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sfxA/nostruct-align/1sfxA.t04-thin90.a2m.gz, have 137584 columns in 582 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhsA/nostruct-align/1vhsA.t04-thin90.a2m.gz # 1vhsA.t04-thin90.a2m with 2422 sequences, total weight= 2422 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.814983 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhsA/info/1vhsA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vhsA/nostruct-align/1vhsA.t04-thin90.a2m.gz, have 137749 columns in 583 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1muwA/nostruct-align/1muwA.t04-thin90.a2m.gz # 1muwA.t04-thin90.a2m with 639 sequences, total weight= 639 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.980694 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1muwA/info/1muwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1muwA/nostruct-align/1muwA.t04-thin90.a2m.gz, have 138135 columns in 584 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rhcA/nostruct-align/1rhcA.t04-thin90.a2m.gz # 1rhcA.t04-thin90.a2m with 663 sequences, total weight= 663 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09328 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rhcA/info/1rhcA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rhcA/nostruct-align/1rhcA.t04-thin90.a2m.gz, have 138465 columns in 585 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1orvA/nostruct-align/1orvA.t04-thin90.a2m.gz # 1orvA.t04-thin90.a2m with 2145 sequences, total weight= 2145 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.856467 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1orvA/info/1orvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1orvA/nostruct-align/1orvA.t04-thin90.a2m.gz, have 139193 columns in 586 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vbiA/nostruct-align/1vbiA.t04-thin90.a2m.gz # 1vbiA.t04-thin90.a2m with 119 sequences, total weight= 37.4554 avg weight= 0.314751 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vbiA/info/1vbiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vbiA/nostruct-align/1vbiA.t04-thin90.a2m.gz, have 139533 columns in 587 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yiiA/nostruct-align/1yiiA.t04-thin90.a2m.gz # 1yiiA.t04-thin90.a2m with 275 sequences, total weight= 85.7979 avg weight= 0.311992 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30098 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yiiA/info/1yiiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1yiiA/nostruct-align/1yiiA.t04-thin90.a2m.gz, have 139849 columns in 588 chains # command:CPU_time= 813.172 sec, elapsed time= 880.787 sec) # command:# command:# Prefix for input files set to /projects/compbio/experiments/protein-predict/predict-2nd/testing/training-data/ # command:# reading script from file dunbrack-30pc-1763-2.t04-thin90-near-backbone-11 # Prefix for input files set to # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1umkA/nostruct-align/1umkA.t04-thin90.a2m.gz # 1umkA.t04-thin90.a2m with 1527 sequences, total weight= 1527 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.964449 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1umkA/info/1umkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1umkA/nostruct-align/1umkA.t04-thin90.a2m.gz, have 271 columns in 1 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gmuA/nostruct-align/1gmuA.t04-thin90.a2m.gz # 1gmuA.t04-thin90.a2m with 67 sequences, total weight= 46.5223 avg weight= 0.694362 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gmuA/info/1gmuA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gmuA/nostruct-align/1gmuA.t04-thin90.a2m.gz, have 409 columns in 2 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1aohA/nostruct-align/1aohA.t04-thin90.a2m.gz # 1aohA.t04-thin90.a2m with 39 sequences, total weight= 12.2497 avg weight= 0.314094 30 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1aohA/info/1aohA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1aohA/nostruct-align/1aohA.t04-thin90.a2m.gz, have 552 columns in 3 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s0aA/nostruct-align/1s0aA.t04-thin90.a2m.gz # 1s0aA.t04-thin90.a2m with 2258 sequences, total weight= 2258 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00916 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s0aA/info/1s0aA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1s0aA/nostruct-align/1s0aA.t04-thin90.a2m.gz, have 980 columns in 4 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g6gA/nostruct-align/1g6gA.t04-thin90.a2m.gz # 1g6gA.t04-thin90.a2m with 437 sequences, total weight= 437 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.967914 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g6gA/info/1g6gA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g6gA/nostruct-align/1g6gA.t04-thin90.a2m.gz, have 1107 columns in 5 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1din/nostruct-align/1din.t04-thin90.a2m.gz # 1din.t04-thin90.a2m with 2331 sequences, total weight= 2331 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.831788 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1din/info/1din.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1din/nostruct-align/1din.t04-thin90.a2m.gz, have 1340 columns in 6 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jkeA/nostruct-align/1jkeA.t04-thin90.a2m.gz # 1jkeA.t04-thin90.a2m with 117 sequences, total weight= 9.42106 avg weight= 0.0805219 30 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jkeA/info/1jkeA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jkeA/nostruct-align/1jkeA.t04-thin90.a2m.gz, have 1485 columns in 7 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tuvA/nostruct-align/1tuvA.t04-thin90.a2m.gz # 1tuvA.t04-thin90.a2m with 198 sequences, total weight= 198 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20068 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tuvA/info/1tuvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tuvA/nostruct-align/1tuvA.t04-thin90.a2m.gz, have 1588 columns in 8 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1ls9A/nostruct-align/1ls9A.t04-thin90.a2m.gz # 1ls9A.t04-thin90.a2m with 868 sequences, total weight= 868 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1073 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1ls9A/info/1ls9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1ls9A/nostruct-align/1ls9A.t04-thin90.a2m.gz, have 1679 columns in 9 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gyvA/nostruct-align/1gyvA.t04-thin90.a2m.gz # 1gyvA.t04-thin90.a2m with 44 sequences, total weight= 30.6068 avg weight= 0.69561 39 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gyvA/info/1gyvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gyvA/nostruct-align/1gyvA.t04-thin90.a2m.gz, have 1799 columns in 10 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1ccwA/nostruct-align/1ccwA.t04-thin90.a2m.gz # 1ccwA.t04-thin90.a2m with 237 sequences, total weight= 62.4091 avg weight= 0.26333 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30069 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1ccwA/info/1ccwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1ccwA/nostruct-align/1ccwA.t04-thin90.a2m.gz, have 1936 columns in 11 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iujA/nostruct-align/1iujA.t04-thin90.a2m.gz # 1iujA.t04-thin90.a2m with 232 sequences, total weight= 232 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.971108 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iujA/info/1iujA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iujA/nostruct-align/1iujA.t04-thin90.a2m.gz, have 2038 columns in 12 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y8aA/nostruct-align/1y8aA.t04-thin90.a2m.gz # 1y8aA.t04-thin90.a2m with 31 sequences, total weight= 28.3018 avg weight= 0.91296 23 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y8aA/info/1y8aA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1y8aA/nostruct-align/1y8aA.t04-thin90.a2m.gz, have 2351 columns in 13 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1ako/nostruct-align/1ako.t04-thin90.a2m.gz # 1ako.t04-thin90.a2m with 1092 sequences, total weight= 1092 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.853754 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1ako/info/1ako.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1ako/nostruct-align/1ako.t04-thin90.a2m.gz, have 2619 columns in 14 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nh0A/nostruct-align/1nh0A.t04-thin90.a2m.gz # 1nh0A.t04-thin90.a2m with 2 sequences, total weight= 1.74124 avg weight= 0.870622 7 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nh0A/info/1nh0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nh0A/nostruct-align/1nh0A.t04-thin90.a2m.gz, have 2718 columns in 15 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dlwA/nostruct-align/1dlwA.t04-thin90.a2m.gz # 1dlwA.t04-thin90.a2m with 82 sequences, total weight= 51.1132 avg weight= 0.623332 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dlwA/info/1dlwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dlwA/nostruct-align/1dlwA.t04-thin90.a2m.gz, have 2834 columns in 16 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o7sA/nostruct-align/1o7sA.t04-thin90.a2m.gz # 1o7sA.t04-thin90.a2m with 1335 sequences, total weight= 14.8397 avg weight= 0.0111159 37 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o7sA/info/1o7sA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o7sA/nostruct-align/1o7sA.t04-thin90.a2m.gz, have 2946 columns in 17 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ixh/nostruct-align/1ixh.t04-thin90.a2m.gz # 1ixh.t04-thin90.a2m with 300 sequences, total weight= 300 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26534 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ixh/info/1ixh.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1ixh/nostruct-align/1ixh.t04-thin90.a2m.gz, have 3267 columns in 18 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uuzA/nostruct-align/1uuzA.t04-thin90.a2m.gz # 1uuzA.t04-thin90.a2m with 9 sequences, total weight= 6.71441 avg weight= 0.746045 18 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uuzA/info/1uuzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uuzA/nostruct-align/1uuzA.t04-thin90.a2m.gz, have 3396 columns in 19 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kwfA/nostruct-align/1kwfA.t04-thin90.a2m.gz # 1kwfA.t04-thin90.a2m with 58 sequences, total weight= 58 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14854 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kwfA/info/1kwfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kwfA/nostruct-align/1kwfA.t04-thin90.a2m.gz, have 3759 columns in 20 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pdo/nostruct-align/1pdo.t04-thin90.a2m.gz # 1pdo.t04-thin90.a2m with 148 sequences, total weight= 130.693 avg weight= 0.883058 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30069 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pdo/info/1pdo.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pdo/nostruct-align/1pdo.t04-thin90.a2m.gz, have 3888 columns in 21 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j98A/nostruct-align/1j98A.t04-thin90.a2m.gz # 1j98A.t04-thin90.a2m with 45 sequences, total weight= 6.79708 avg weight= 0.151046 27 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j98A/info/1j98A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j98A/nostruct-align/1j98A.t04-thin90.a2m.gz, have 4042 columns in 22 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jidA/nostruct-align/1jidA.t04-thin90.a2m.gz # 1jidA.t04-thin90.a2m with 46 sequences, total weight= 23.749 avg weight= 0.516282 40 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jidA/info/1jidA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jidA/nostruct-align/1jidA.t04-thin90.a2m.gz, have 4156 columns in 23 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l2hA/nostruct-align/1l2hA.t04-thin90.a2m.gz # 1l2hA.t04-thin90.a2m with 80 sequences, total weight= 29.6994 avg weight= 0.371242 44 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l2hA/info/1l2hA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1l2hA/nostruct-align/1l2hA.t04-thin90.a2m.gz, have 4300 columns in 24 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kv7A/nostruct-align/1kv7A.t04-thin90.a2m.gz # 1kv7A.t04-thin90.a2m with 694 sequences, total weight= 694 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09459 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kv7A/info/1kv7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kv7A/nostruct-align/1kv7A.t04-thin90.a2m.gz, have 4763 columns in 25 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1ft5A/nostruct-align/1ft5A.t04-thin90.a2m.gz # 1ft5A.t04-thin90.a2m with 148 sequences, total weight= 148 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.767287 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1ft5A/info/1ft5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1ft5A/nostruct-align/1ft5A.t04-thin90.a2m.gz, have 4974 columns in 26 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1ytlA/nostruct-align/1ytlA.t04-thin90.a2m.gz # 1ytlA.t04-thin90.a2m with 15 sequences, total weight= 7.4637 avg weight= 0.49758 21 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1ytlA/info/1ytlA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1ytlA/nostruct-align/1ytlA.t04-thin90.a2m.gz, have 5132 columns in 27 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ro7A/nostruct-align/1ro7A.t04-thin90.a2m.gz # 1ro7A.t04-thin90.a2m with 6 sequences, total weight= 3.49632 avg weight= 0.58272 12 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ro7A/info/1ro7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1ro7A/nostruct-align/1ro7A.t04-thin90.a2m.gz, have 5390 columns in 28 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/4f/4fiv/nostruct-align/4fiv.t04-thin90.a2m.gz # 4fiv.t04-thin90.a2m with 10 sequences, total weight= 3.21911 avg weight= 0.321911 12 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/4f/4fiv/info/4fiv.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/4f/4fiv/nostruct-align/4fiv.t04-thin90.a2m.gz, have 5503 columns in 29 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lj8A/nostruct-align/1lj8A.t04-thin90.a2m.gz # 1lj8A.t04-thin90.a2m with 116 sequences, total weight= 58.3912 avg weight= 0.503373 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lj8A/info/1lj8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lj8A/nostruct-align/1lj8A.t04-thin90.a2m.gz, have 5995 columns in 30 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1z/1z2nX/nostruct-align/1z2nX.t04-thin90.a2m.gz # 1z2nX.t04-thin90.a2m with 2023 sequences, total weight= 2023 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.995105 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1z/1z2nX/info/1z2nX.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1z/1z2nX/nostruct-align/1z2nX.t04-thin90.a2m.gz, have 6306 columns in 31 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qgvA/nostruct-align/1qgvA.t04-thin90.a2m.gz # 1qgvA.t04-thin90.a2m with 21 sequences, total weight= 6.98096 avg weight= 0.332427 21 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qgvA/info/1qgvA.stride-mixed.near-backbone-11 WARNING: skipping a, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1q/1qgvA/nostruct-align/1qgvA.t04-thin90.a2m.gz, have 6436 columns in 32 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o6vA/nostruct-align/1o6vA.t04-thin90.a2m.gz # 1o6vA.t04-thin90.a2m with 2332 sequences, total weight= 2332 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.956701 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o6vA/info/1o6vA.stride-mixed.near-backbone-11 WARNING: skipping c, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1o/1o6vA/nostruct-align/1o6vA.t04-thin90.a2m.gz, have 6898 columns in 33 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h6hA/nostruct-align/1h6hA.t04-thin90.a2m.gz # 1h6hA.t04-thin90.a2m with 217 sequences, total weight= 217 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08375 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h6hA/info/1h6hA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h6hA/nostruct-align/1h6hA.t04-thin90.a2m.gz, have 7041 columns in 34 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ugxA/nostruct-align/1ugxA.t04-thin90.a2m.gz # 1ugxA.t04-thin90.a2m with 207 sequences, total weight= 49.7138 avg weight= 0.240163 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30035 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ugxA/info/1ugxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ugxA/nostruct-align/1ugxA.t04-thin90.a2m.gz, have 7174 columns in 35 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fx2A/nostruct-align/1fx2A.t04-thin90.a2m.gz # 1fx2A.t04-thin90.a2m with 619 sequences, total weight= 619 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12502 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fx2A/info/1fx2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fx2A/nostruct-align/1fx2A.t04-thin90.a2m.gz, have 7409 columns in 36 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gx3A/nostruct-align/1gx3A.t04-thin90.a2m.gz # 1gx3A.t04-thin90.a2m with 70 sequences, total weight= 70 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23276 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gx3A/info/1gx3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gx3A/nostruct-align/1gx3A.t04-thin90.a2m.gz, have 7685 columns in 37 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jhjA/nostruct-align/1jhjA.t04-thin90.a2m.gz # 1jhjA.t04-thin90.a2m with 31 sequences, total weight= 20.2973 avg weight= 0.654751 36 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jhjA/info/1jhjA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jhjA/nostruct-align/1jhjA.t04-thin90.a2m.gz, have 7846 columns in 38 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kwgA/nostruct-align/1kwgA.t04-thin90.a2m.gz # 1kwgA.t04-thin90.a2m with 341 sequences, total weight= 341 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.891725 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kwgA/info/1kwgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kwgA/nostruct-align/1kwgA.t04-thin90.a2m.gz, have 8490 columns in 39 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uf5A/nostruct-align/1uf5A.t04-thin90.a2m.gz # 1uf5A.t04-thin90.a2m with 701 sequences, total weight= 701 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05915 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uf5A/info/1uf5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uf5A/nostruct-align/1uf5A.t04-thin90.a2m.gz, have 8793 columns in 40 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1z/1z0pA/nostruct-align/1z0pA.t04-thin90.a2m.gz # 1z0pA.t04-thin90.a2m with 7 sequences, total weight= 2.86623 avg weight= 0.409461 10 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1z/1z0pA/info/1z0pA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1z/1z0pA/nostruct-align/1z0pA.t04-thin90.a2m.gz, have 8866 columns in 41 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p6oA/nostruct-align/1p6oA.t04-thin90.a2m.gz # 1p6oA.t04-thin90.a2m with 629 sequences, total weight= 629 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11819 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p6oA/info/1p6oA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p6oA/nostruct-align/1p6oA.t04-thin90.a2m.gz, have 9022 columns in 42 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dowA/nostruct-align/1dowA.t04-thin90.a2m.gz # 1dowA.t04-thin90.a2m with 19 sequences, total weight= 10.7234 avg weight= 0.564392 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dowA/info/1dowA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dowA/nostruct-align/1dowA.t04-thin90.a2m.gz, have 9227 columns in 43 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vprA/nostruct-align/1vprA.t04-thin90.a2m.gz # 1vprA.t04-thin90.a2m with 13 sequences, total weight= 2.39252 avg weight= 0.18404 11 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vprA/info/1vprA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vprA/nostruct-align/1vprA.t04-thin90.a2m.gz, have 9578 columns in 44 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vpdA/nostruct-align/1vpdA.t04-thin90.a2m.gz # 1vpdA.t04-thin90.a2m with 2059 sequences, total weight= 2059 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.939326 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vpdA/info/1vpdA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vpdA/nostruct-align/1vpdA.t04-thin90.a2m.gz, have 9872 columns in 45 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qf8A/nostruct-align/1qf8A.t04-thin90.a2m.gz # 1qf8A.t04-thin90.a2m with 37 sequences, total weight= 7.9599 avg weight= 0.215132 28 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qf8A/info/1qf8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qf8A/nostruct-align/1qf8A.t04-thin90.a2m.gz, have 10039 columns in 46 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i4uA/nostruct-align/1i4uA.t04-thin90.a2m.gz # 1i4uA.t04-thin90.a2m with 357 sequences, total weight= 357 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.950118 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i4uA/info/1i4uA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i4uA/nostruct-align/1i4uA.t04-thin90.a2m.gz, have 10220 columns in 47 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xjvA/nostruct-align/1xjvA.t04-thin90.a2m.gz # 1xjvA.t04-thin90.a2m with 48 sequences, total weight= 48 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.987461 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xjvA/info/1xjvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xjvA/nostruct-align/1xjvA.t04-thin90.a2m.gz, have 10511 columns in 48 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1ytvA/nostruct-align/1ytvA.t04-thin90.a2m.gz # 1ytvA.t04-thin90.a2m with 1555 sequences, total weight= 1555 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.872609 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1ytvA/info/1ytvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1ytvA/nostruct-align/1ytvA.t04-thin90.a2m.gz, have 10877 columns in 49 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m0wA/nostruct-align/1m0wA.t04-thin90.a2m.gz # 1m0wA.t04-thin90.a2m with 39 sequences, total weight= 14.8671 avg weight= 0.381207 32 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m0wA/info/1m0wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m0wA/nostruct-align/1m0wA.t04-thin90.a2m.gz, have 11358 columns in 50 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/4u/4uagA/nostruct-align/4uagA.t04-thin90.a2m.gz # 4uagA.t04-thin90.a2m with 908 sequences, total weight= 908 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0959 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/4u/4uagA/info/4uagA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/4u/4uagA/nostruct-align/4uagA.t04-thin90.a2m.gz, have 11787 columns in 51 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vpbA/nostruct-align/1vpbA.t04-thin90.a2m.gz # 1vpbA.t04-thin90.a2m with 326 sequences, total weight= 326 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18802 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vpbA/info/1vpbA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vpbA/nostruct-align/1vpbA.t04-thin90.a2m.gz, have 12224 columns in 52 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l9xA/nostruct-align/1l9xA.t04-thin90.a2m.gz # 1l9xA.t04-thin90.a2m with 1829 sequences, total weight= 1829 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.998203 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l9xA/info/1l9xA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1l9xA/nostruct-align/1l9xA.t04-thin90.a2m.gz, have 12512 columns in 53 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rb9/nostruct-align/1rb9.t04-thin90.a2m.gz # 1rb9.t04-thin90.a2m with 140 sequences, total weight= 9.73272 avg weight= 0.0695194 42 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rb9/info/1rb9.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rb9/nostruct-align/1rb9.t04-thin90.a2m.gz, have 12564 columns in 54 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n71A/nostruct-align/1n71A.t04-thin90.a2m.gz # 1n71A.t04-thin90.a2m with 2153 sequences, total weight= 2153 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.842131 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n71A/info/1n71A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n71A/nostruct-align/1n71A.t04-thin90.a2m.gz, have 12744 columns in 55 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t7rA/nostruct-align/1t7rA.t04-thin90.a2m.gz # 1t7rA.t04-thin90.a2m with 860 sequences, total weight= 860 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.989852 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t7rA/info/1t7rA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t7rA/nostruct-align/1t7rA.t04-thin90.a2m.gz, have 12994 columns in 56 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pj5A/nostruct-align/1pj5A.t04-thin90.a2m.gz # 1pj5A.t04-thin90.a2m with 2145 sequences, total weight= 2145 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.97474 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pj5A/info/1pj5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pj5A/nostruct-align/1pj5A.t04-thin90.a2m.gz, have 13821 columns in 57 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vdkA/nostruct-align/1vdkA.t04-thin90.a2m.gz # 1vdkA.t04-thin90.a2m with 626 sequences, total weight= 219.975 avg weight= 0.351398 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30786 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vdkA/info/1vdkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vdkA/nostruct-align/1vdkA.t04-thin90.a2m.gz, have 14279 columns in 58 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2s/2sli/nostruct-align/2sli.t04-thin90.a2m.gz # 2sli.t04-thin90.a2m with 356 sequences, total weight= 356 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.911663 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2s/2sli/info/2sli.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2s/2sli/nostruct-align/2sli.t04-thin90.a2m.gz, have 14958 columns in 59 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qs1A/nostruct-align/1qs1A.t04-thin90.a2m.gz # 1qs1A.t04-thin90.a2m with 85 sequences, total weight= 85 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03748 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qs1A/info/1qs1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qs1A/nostruct-align/1qs1A.t04-thin90.a2m.gz, have 15360 columns in 60 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h4gA/nostruct-align/1h4gA.t04-thin90.a2m.gz # 1h4gA.t04-thin90.a2m with 105 sequences, total weight= 11.5672 avg weight= 0.110164 33 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h4gA/info/1h4gA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h4gA/nostruct-align/1h4gA.t04-thin90.a2m.gz, have 15566 columns in 61 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v8cA/nostruct-align/1v8cA.t04-thin90.a2m.gz # 1v8cA.t04-thin90.a2m with 174 sequences, total weight= 86.6307 avg weight= 0.497878 45 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v8cA/info/1v8cA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v8cA/nostruct-align/1v8cA.t04-thin90.a2m.gz, have 15731 columns in 62 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mk4A/nostruct-align/1mk4A.t04-thin90.a2m.gz # 1mk4A.t04-thin90.a2m with 2445 sequences, total weight= 2445 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.835904 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mk4A/info/1mk4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mk4A/nostruct-align/1mk4A.t04-thin90.a2m.gz, have 15888 columns in 63 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nh8A/nostruct-align/1nh8A.t04-thin90.a2m.gz # 1nh8A.t04-thin90.a2m with 133 sequences, total weight= 32.2712 avg weight= 0.242641 45 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nh8A/info/1nh8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nh8A/nostruct-align/1nh8A.t04-thin90.a2m.gz, have 16164 columns in 64 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vkpA/nostruct-align/1vkpA.t04-thin90.a2m.gz # 1vkpA.t04-thin90.a2m with 68 sequences, total weight= 21.6054 avg weight= 0.317727 38 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vkpA/info/1vkpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vkpA/nostruct-align/1vkpA.t04-thin90.a2m.gz, have 16529 columns in 65 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2s/2spcA/nostruct-align/2spcA.t04-thin90.a2m.gz # 2spcA.t04-thin90.a2m with 563 sequences, total weight= 563 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08351 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2s/2spcA/info/2spcA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2s/2spcA/nostruct-align/2spcA.t04-thin90.a2m.gz, have 16636 columns in 66 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yb3A/nostruct-align/1yb3A.t04-thin90.a2m.gz # 1yb3A.t04-thin90.a2m with 4 sequences, total weight= 2.65581 avg weight= 0.663953 10 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yb3A/info/1yb3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1yb3A/nostruct-align/1yb3A.t04-thin90.a2m.gz, have 16802 columns in 67 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mgtA/nostruct-align/1mgtA.t04-thin90.a2m.gz # 1mgtA.t04-thin90.a2m with 292 sequences, total weight= 222.221 avg weight= 0.761032 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30216 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mgtA/info/1mgtA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mgtA/nostruct-align/1mgtA.t04-thin90.a2m.gz, have 16971 columns in 68 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rutX/nostruct-align/1rutX.t04-thin90.a2m.gz # 1rutX.t04-thin90.a2m with 688 sequences, total weight= 688 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14755 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rutX/info/1rutX.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rutX/nostruct-align/1rutX.t04-thin90.a2m.gz, have 17128 columns in 69 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1ht6A/nostruct-align/1ht6A.t04-thin90.a2m.gz # 1ht6A.t04-thin90.a2m with 1262 sequences, total weight= 1262 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.983472 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1ht6A/info/1ht6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1ht6A/nostruct-align/1ht6A.t04-thin90.a2m.gz, have 17532 columns in 70 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ok7A/nostruct-align/1ok7A.t04-thin90.a2m.gz # 1ok7A.t04-thin90.a2m with 219 sequences, total weight= 88.1028 avg weight= 0.402296 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30188 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ok7A/info/1ok7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ok7A/nostruct-align/1ok7A.t04-thin90.a2m.gz, have 17898 columns in 71 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1czpA/nostruct-align/1czpA.t04-thin90.a2m.gz # 1czpA.t04-thin90.a2m with 683 sequences, total weight= 683 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22998 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1czpA/info/1czpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1czpA/nostruct-align/1czpA.t04-thin90.a2m.gz, have 17996 columns in 72 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ojhA/nostruct-align/1ojhA.t04-thin90.a2m.gz # 1ojhA.t04-thin90.a2m with 3 sequences, total weight= 2.57236 avg weight= 0.857452 7 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ojhA/info/1ojhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ojhA/nostruct-align/1ojhA.t04-thin90.a2m.gz, have 18048 columns in 73 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1me4A/nostruct-align/1me4A.t04-thin90.a2m.gz # 1me4A.t04-thin90.a2m with 834 sequences, total weight= 378.93 avg weight= 0.454353 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31287 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1me4A/info/1me4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1me4A/nostruct-align/1me4A.t04-thin90.a2m.gz, have 18263 columns in 74 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g6xA/nostruct-align/1g6xA.t04-thin90.a2m.gz # 1g6xA.t04-thin90.a2m with 455 sequences, total weight= 82.129 avg weight= 0.180503 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30532 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g6xA/info/1g6xA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g6xA/nostruct-align/1g6xA.t04-thin90.a2m.gz, have 18321 columns in 75 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x99A/nostruct-align/1x99A.t04-thin90.a2m.gz # 1x99A.t04-thin90.a2m with 10 sequences, total weight= 4.55864 avg weight= 0.455864 15 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x99A/info/1x99A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1x99A/nostruct-align/1x99A.t04-thin90.a2m.gz, have 18466 columns in 76 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ogiA/nostruct-align/1ogiA.t04-thin90.a2m.gz # 1ogiA.t04-thin90.a2m with 1254 sequences, total weight= 1254 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.959849 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ogiA/info/1ogiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ogiA/nostruct-align/1ogiA.t04-thin90.a2m.gz, have 18761 columns in 77 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jiwI/nostruct-align/1jiwI.t04-thin90.a2m.gz # 1jiwI.t04-thin90.a2m with 17 sequences, total weight= 8.63657 avg weight= 0.508033 23 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jiwI/info/1jiwI.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jiwI/nostruct-align/1jiwI.t04-thin90.a2m.gz, have 18866 columns in 78 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pe1A/nostruct-align/1pe1A.t04-thin90.a2m.gz # 1pe1A.t04-thin90.a2m with 291 sequences, total weight= 32.1139 avg weight= 0.110357 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pe1A/info/1pe1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pe1A/nostruct-align/1pe1A.t04-thin90.a2m.gz, have 19124 columns in 79 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mf7A/nostruct-align/1mf7A.t04-thin90.a2m.gz # 1mf7A.t04-thin90.a2m with 1178 sequences, total weight= 1178 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.939303 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mf7A/info/1mf7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mf7A/nostruct-align/1mf7A.t04-thin90.a2m.gz, have 19318 columns in 80 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pyoB/nostruct-align/1pyoB.t04-thin90.a2m.gz # 1pyoB.t04-thin90.a2m with 51 sequences, total weight= 16.8203 avg weight= 0.32981 34 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pyoB/info/1pyoB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pyoB/nostruct-align/1pyoB.t04-thin90.a2m.gz, have 19416 columns in 81 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tl9A/nostruct-align/1tl9A.t04-thin90.a2m.gz # 1tl9A.t04-thin90.a2m with 191 sequences, total weight= 186.924 avg weight= 0.978657 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tl9A/info/1tl9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tl9A/nostruct-align/1tl9A.t04-thin90.a2m.gz, have 19737 columns in 82 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ob8A/nostruct-align/1ob8A.t04-thin90.a2m.gz # 1ob8A.t04-thin90.a2m with 19 sequences, total weight= 13.2796 avg weight= 0.698925 27 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ob8A/info/1ob8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ob8A/nostruct-align/1ob8A.t04-thin90.a2m.gz, have 19856 columns in 83 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hxrA/nostruct-align/1hxrA.t04-thin90.a2m.gz # 1hxrA.t04-thin90.a2m with 11 sequences, total weight= 9.0057 avg weight= 0.8187 23 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hxrA/info/1hxrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hxrA/nostruct-align/1hxrA.t04-thin90.a2m.gz, have 19963 columns in 84 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g61A/nostruct-align/1g61A.t04-thin90.a2m.gz # 1g61A.t04-thin90.a2m with 46 sequences, total weight= 12.2374 avg weight= 0.266029 30 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g61A/info/1g61A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g61A/nostruct-align/1g61A.t04-thin90.a2m.gz, have 20188 columns in 85 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1snrA/nostruct-align/1snrA.t04-thin90.a2m.gz # 1snrA.t04-thin90.a2m with 783 sequences, total weight= 783 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06745 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1snrA/info/1snrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1snrA/nostruct-align/1snrA.t04-thin90.a2m.gz, have 20524 columns in 86 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vc4A/nostruct-align/1vc4A.t04-thin90.a2m.gz # 1vc4A.t04-thin90.a2m with 439 sequences, total weight= 439 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22047 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vc4A/info/1vc4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vc4A/nostruct-align/1vc4A.t04-thin90.a2m.gz, have 20778 columns in 87 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oxdA/nostruct-align/1oxdA.t04-thin90.a2m.gz # 1oxdA.t04-thin90.a2m with 60 sequences, total weight= 15.7015 avg weight= 0.261692 32 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oxdA/info/1oxdA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oxdA/nostruct-align/1oxdA.t04-thin90.a2m.gz, have 21004 columns in 88 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1co6A/nostruct-align/1co6A.t04-thin90.a2m.gz # 1co6A.t04-thin90.a2m with 184 sequences, total weight= 23.2617 avg weight= 0.126422 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1co6A/info/1co6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1co6A/nostruct-align/1co6A.t04-thin90.a2m.gz, have 21111 columns in 89 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1ftrA/nostruct-align/1ftrA.t04-thin90.a2m.gz # 1ftrA.t04-thin90.a2m with 22 sequences, total weight= 5.02428 avg weight= 0.228377 20 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1ftrA/info/1ftrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1ftrA/nostruct-align/1ftrA.t04-thin90.a2m.gz, have 21407 columns in 90 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sjwA/nostruct-align/1sjwA.t04-thin90.a2m.gz # 1sjwA.t04-thin90.a2m with 157 sequences, total weight= 157 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00149 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sjwA/info/1sjwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sjwA/nostruct-align/1sjwA.t04-thin90.a2m.gz, have 21549 columns in 91 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pbjA/nostruct-align/1pbjA.t04-thin90.a2m.gz # 1pbjA.t04-thin90.a2m with 1727 sequences, total weight= 1727 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09669 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pbjA/info/1pbjA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pbjA/nostruct-align/1pbjA.t04-thin90.a2m.gz, have 21669 columns in 92 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g8mA/nostruct-align/1g8mA.t04-thin90.a2m.gz # 1g8mA.t04-thin90.a2m with 164 sequences, total weight= 13.8317 avg weight= 0.0843394 35 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g8mA/info/1g8mA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g8mA/nostruct-align/1g8mA.t04-thin90.a2m.gz, have 22259 columns in 93 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vr5A/nostruct-align/1vr5A.t04-thin90.a2m.gz # 1vr5A.t04-thin90.a2m with 1242 sequences, total weight= 1242 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04319 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vr5A/info/1vr5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vr5A/nostruct-align/1vr5A.t04-thin90.a2m.gz, have 22795 columns in 94 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vm9A/nostruct-align/1vm9A.t04-thin90.a2m.gz # 1vm9A.t04-thin90.a2m with 936 sequences, total weight= 936 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12769 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vm9A/info/1vm9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vm9A/nostruct-align/1vm9A.t04-thin90.a2m.gz, have 22904 columns in 95 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uscA/nostruct-align/1uscA.t04-thin90.a2m.gz # 1uscA.t04-thin90.a2m with 358 sequences, total weight= 358 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16375 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uscA/info/1uscA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uscA/nostruct-align/1uscA.t04-thin90.a2m.gz, have 23082 columns in 96 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jy1A/nostruct-align/1jy1A.t04-thin90.a2m.gz # 1jy1A.t04-thin90.a2m with 26 sequences, total weight= 26 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2797 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jy1A/info/1jy1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jy1A/nostruct-align/1jy1A.t04-thin90.a2m.gz, have 23521 columns in 97 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tgsI/nostruct-align/1tgsI.t04-thin90.a2m.gz # 1tgsI.t04-thin90.a2m with 228 sequences, total weight= 74.9276 avg weight= 0.32863 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30532 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tgsI/info/1tgsI.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tgsI/nostruct-align/1tgsI.t04-thin90.a2m.gz, have 23577 columns in 98 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i27A/nostruct-align/1i27A.t04-thin90.a2m.gz # 1i27A.t04-thin90.a2m with 7 sequences, total weight= 3.57044 avg weight= 0.510063 12 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i27A/info/1i27A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i27A/nostruct-align/1i27A.t04-thin90.a2m.gz, have 23650 columns in 99 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kjwA/nostruct-align/1kjwA.t04-thin90.a2m.gz # 1kjwA.t04-thin90.a2m with 791 sequences, total weight= 791 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02163 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kjwA/info/1kjwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kjwA/nostruct-align/1kjwA.t04-thin90.a2m.gz, have 23942 columns in 100 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fpoA/nostruct-align/1fpoA.t04-thin90.a2m.gz # 1fpoA.t04-thin90.a2m with 1239 sequences, total weight= 1239 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.973261 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fpoA/info/1fpoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fpoA/nostruct-align/1fpoA.t04-thin90.a2m.gz, have 24113 columns in 101 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qsaA/nostruct-align/1qsaA.t04-thin90.a2m.gz # 1qsaA.t04-thin90.a2m with 416 sequences, total weight= 416 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.94803 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qsaA/info/1qsaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qsaA/nostruct-align/1qsaA.t04-thin90.a2m.gz, have 24731 columns in 102 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gwmA/nostruct-align/1gwmA.t04-thin90.a2m.gz # 1gwmA.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.953406 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gwmA/info/1gwmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gwmA/nostruct-align/1gwmA.t04-thin90.a2m.gz, have 24884 columns in 103 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vjvA/nostruct-align/1vjvA.t04-thin90.a2m.gz # 1vjvA.t04-thin90.a2m with 733 sequences, total weight= 733 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04734 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vjvA/info/1vjvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vjvA/nostruct-align/1vjvA.t04-thin90.a2m.gz, have 25251 columns in 104 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nlqA/nostruct-align/1nlqA.t04-thin90.a2m.gz # 1nlqA.t04-thin90.a2m with 20 sequences, total weight= 8.92385 avg weight= 0.446193 21 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nlqA/info/1nlqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nlqA/nostruct-align/1nlqA.t04-thin90.a2m.gz, have 25356 columns in 105 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b2pA/nostruct-align/1b2pA.t04-thin90.a2m.gz # 1b2pA.t04-thin90.a2m with 101 sequences, total weight= 38.8378 avg weight= 0.384533 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b2pA/info/1b2pA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1b2pA/nostruct-align/1b2pA.t04-thin90.a2m.gz, have 25475 columns in 106 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fvkA/nostruct-align/1fvkA.t04-thin90.a2m.gz # 1fvkA.t04-thin90.a2m with 480 sequences, total weight= 480 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.92583 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fvkA/info/1fvkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fvkA/nostruct-align/1fvkA.t04-thin90.a2m.gz, have 25663 columns in 107 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1ymtA/nostruct-align/1ymtA.t04-thin90.a2m.gz # 1ymtA.t04-thin90.a2m with 1037 sequences, total weight= 1037 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.880487 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1ymtA/info/1ymtA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1ymtA/nostruct-align/1ymtA.t04-thin90.a2m.gz, have 25898 columns in 108 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pmi/nostruct-align/1pmi.t04-thin90.a2m.gz # 1pmi.t04-thin90.a2m with 124 sequences, total weight= 93.0794 avg weight= 0.75064 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pmi/info/1pmi.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pmi/nostruct-align/1pmi.t04-thin90.a2m.gz, have 26338 columns in 109 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uaiA/nostruct-align/1uaiA.t04-thin90.a2m.gz # 1uaiA.t04-thin90.a2m with 33 sequences, total weight= 29.4297 avg weight= 0.89181 30 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uaiA/info/1uaiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uaiA/nostruct-align/1uaiA.t04-thin90.a2m.gz, have 26561 columns in 110 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o8xA/nostruct-align/1o8xA.t04-thin90.a2m.gz # 1o8xA.t04-thin90.a2m with 1974 sequences, total weight= 1974 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.009 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o8xA/info/1o8xA.stride-mixed.near-backbone-11 WARNING: skipping a, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1o/1o8xA/nostruct-align/1o8xA.t04-thin90.a2m.gz, have 26704 columns in 111 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nulA/nostruct-align/1nulA.t04-thin90.a2m.gz # 1nulA.t04-thin90.a2m with 482 sequences, total weight= 482 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.13804 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nulA/info/1nulA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nulA/nostruct-align/1nulA.t04-thin90.a2m.gz, have 26846 columns in 112 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wjxA/nostruct-align/1wjxA.t04-thin90.a2m.gz # 1wjxA.t04-thin90.a2m with 166 sequences, total weight= 7.285 avg weight= 0.0438855 30 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wjxA/info/1wjxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wjxA/nostruct-align/1wjxA.t04-thin90.a2m.gz, have 26958 columns in 113 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tca/nostruct-align/1tca.t04-thin90.a2m.gz # 1tca.t04-thin90.a2m with 2328 sequences, total weight= 2328 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.888775 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tca/info/1tca.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tca/nostruct-align/1tca.t04-thin90.a2m.gz, have 27275 columns in 114 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lugA/nostruct-align/1lugA.t04-thin90.a2m.gz # 1lugA.t04-thin90.a2m with 186 sequences, total weight= 82.5507 avg weight= 0.443821 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30106 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lugA/info/1lugA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lugA/nostruct-align/1lugA.t04-thin90.a2m.gz, have 27534 columns in 115 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wmhB/nostruct-align/1wmhB.t04-thin90.a2m.gz # 1wmhB.t04-thin90.a2m with 16 sequences, total weight= 4.91324 avg weight= 0.307077 18 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wmhB/info/1wmhB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wmhB/nostruct-align/1wmhB.t04-thin90.a2m.gz, have 27616 columns in 116 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oaiA/nostruct-align/1oaiA.t04-thin90.a2m.gz # 1oaiA.t04-thin90.a2m with 10 sequences, total weight= 4.34915 avg weight= 0.434915 15 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oaiA/info/1oaiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oaiA/nostruct-align/1oaiA.t04-thin90.a2m.gz, have 27675 columns in 117 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jr8A/nostruct-align/1jr8A.t04-thin90.a2m.gz # 1jr8A.t04-thin90.a2m with 69 sequences, total weight= 69 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29497 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jr8A/info/1jr8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jr8A/nostruct-align/1jr8A.t04-thin90.a2m.gz, have 27780 columns in 118 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j1nA/nostruct-align/1j1nA.t04-thin90.a2m.gz # 1j1nA.t04-thin90.a2m with 1235 sequences, total weight= 1235 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.854801 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j1nA/info/1j1nA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j1nA/nostruct-align/1j1nA.t04-thin90.a2m.gz, have 28272 columns in 119 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v58A/nostruct-align/1v58A.t04-thin90.a2m.gz # 1v58A.t04-thin90.a2m with 524 sequences, total weight= 524 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.899841 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v58A/info/1v58A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v58A/nostruct-align/1v58A.t04-thin90.a2m.gz, have 28501 columns in 120 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w3oA/nostruct-align/1w3oA.t04-thin90.a2m.gz # 1w3oA.t04-thin90.a2m with 187 sequences, total weight= 187 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19217 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w3oA/info/1w3oA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w3oA/nostruct-align/1w3oA.t04-thin90.a2m.gz, have 28705 columns in 121 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u4gA/nostruct-align/1u4gA.t04-thin90.a2m.gz # 1u4gA.t04-thin90.a2m with 139 sequences, total weight= 115.721 avg weight= 0.832522 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30035 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u4gA/info/1u4gA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1u4gA/nostruct-align/1u4gA.t04-thin90.a2m.gz, have 29003 columns in 122 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kllA/nostruct-align/1kllA.t04-thin90.a2m.gz # 1kllA.t04-thin90.a2m with 1638 sequences, total weight= 1638 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.817344 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kllA/info/1kllA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kllA/nostruct-align/1kllA.t04-thin90.a2m.gz, have 29131 columns in 123 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eexA/nostruct-align/1eexA.t04-thin90.a2m.gz # 1eexA.t04-thin90.a2m with 9 sequences, total weight= 2.81732 avg weight= 0.313036 12 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eexA/info/1eexA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1eexA/nostruct-align/1eexA.t04-thin90.a2m.gz, have 29682 columns in 124 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1roaA/nostruct-align/1roaA.t04-thin90.a2m.gz # 1roaA.t04-thin90.a2m with 220 sequences, total weight= 220 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17781 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1roaA/info/1roaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1roaA/nostruct-align/1roaA.t04-thin90.a2m.gz, have 29793 columns in 125 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1atg/nostruct-align/1atg.t04-thin90.a2m.gz # 1atg.t04-thin90.a2m with 1533 sequences, total weight= 1533 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.830639 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1atg/info/1atg.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1atg/nostruct-align/1atg.t04-thin90.a2m.gz, have 30024 columns in 126 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f74A/nostruct-align/1f74A.t04-thin90.a2m.gz # 1f74A.t04-thin90.a2m with 443 sequences, total weight= 443 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28296 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f74A/info/1f74A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f74A/nostruct-align/1f74A.t04-thin90.a2m.gz, have 30317 columns in 127 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v8hA/nostruct-align/1v8hA.t04-thin90.a2m.gz # 1v8hA.t04-thin90.a2m with 40 sequences, total weight= 20.8724 avg weight= 0.52181 36 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v8hA/info/1v8hA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v8hA/nostruct-align/1v8hA.t04-thin90.a2m.gz, have 30423 columns in 128 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n62B/nostruct-align/1n62B.t04-thin90.a2m.gz # 1n62B.t04-thin90.a2m with 421 sequences, total weight= 339.897 avg weight= 0.807357 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30198 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n62B/info/1n62B.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n62B/nostruct-align/1n62B.t04-thin90.a2m.gz, have 31227 columns in 129 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gpiA/nostruct-align/1gpiA.t04-thin90.a2m.gz # 1gpiA.t04-thin90.a2m with 67 sequences, total weight= 6.94999 avg weight= 0.103731 27 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gpiA/info/1gpiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gpiA/nostruct-align/1gpiA.t04-thin90.a2m.gz, have 31658 columns in 130 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uylA/nostruct-align/1uylA.t04-thin90.a2m.gz # 1uylA.t04-thin90.a2m with 297 sequences, total weight= 52.5518 avg weight= 0.176942 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30046 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uylA/info/1uylA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uylA/nostruct-align/1uylA.t04-thin90.a2m.gz, have 31865 columns in 131 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f2tA/nostruct-align/1f2tA.t04-thin90.a2m.gz # 1f2tA.t04-thin90.a2m with 2301 sequences, total weight= 2301 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18876 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f2tA/info/1f2tA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f2tA/nostruct-align/1f2tA.t04-thin90.a2m.gz, have 32010 columns in 132 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hxn/nostruct-align/1hxn.t04-thin90.a2m.gz # 1hxn.t04-thin90.a2m with 181 sequences, total weight= 181 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27888 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hxn/info/1hxn.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hxn/nostruct-align/1hxn.t04-thin90.a2m.gz, have 32220 columns in 133 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tn6A/nostruct-align/1tn6A.t04-thin90.a2m.gz # 1tn6A.t04-thin90.a2m with 2427 sequences, total weight= 2427 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0661 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tn6A/info/1tn6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tn6A/nostruct-align/1tn6A.t04-thin90.a2m.gz, have 32535 columns in 134 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qo7A/nostruct-align/1qo7A.t04-thin90.a2m.gz # 1qo7A.t04-thin90.a2m with 2357 sequences, total weight= 2357 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.85961 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qo7A/info/1qo7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qo7A/nostruct-align/1qo7A.t04-thin90.a2m.gz, have 32920 columns in 135 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y7rA/nostruct-align/1y7rA.t04-thin90.a2m.gz # 1y7rA.t04-thin90.a2m with 2368 sequences, total weight= 2368 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.906632 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y7rA/info/1y7rA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1y7rA/nostruct-align/1y7rA.t04-thin90.a2m.gz, have 33053 columns in 136 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lv7A/nostruct-align/1lv7A.t04-thin90.a2m.gz # 1lv7A.t04-thin90.a2m with 2256 sequences, total weight= 2256 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15125 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lv7A/info/1lv7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lv7A/nostruct-align/1lv7A.t04-thin90.a2m.gz, have 33304 columns in 137 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2p/2por/nostruct-align/2por.t04-thin90.a2m.gz # 2por.t04-thin90.a2m with 445 sequences, total weight= 445 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23874 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2p/2por/info/2por.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2p/2por/nostruct-align/2por.t04-thin90.a2m.gz, have 33605 columns in 138 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s9uA/nostruct-align/1s9uA.t04-thin90.a2m.gz # 1s9uA.t04-thin90.a2m with 127 sequences, total weight= 127 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07429 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s9uA/info/1s9uA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1s9uA/nostruct-align/1s9uA.t04-thin90.a2m.gz, have 33806 columns in 139 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oa8A/nostruct-align/1oa8A.t04-thin90.a2m.gz # 1oa8A.t04-thin90.a2m with 9 sequences, total weight= 6.3394 avg weight= 0.704378 16 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oa8A/info/1oa8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oa8A/nostruct-align/1oa8A.t04-thin90.a2m.gz, have 33934 columns in 140 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j8bA/nostruct-align/1j8bA.t04-thin90.a2m.gz # 1j8bA.t04-thin90.a2m with 114 sequences, total weight= 25.3339 avg weight= 0.222227 40 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j8bA/info/1j8bA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j8bA/nostruct-align/1j8bA.t04-thin90.a2m.gz, have 34026 columns in 141 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w23A/nostruct-align/1w23A.t04-thin90.a2m.gz # 1w23A.t04-thin90.a2m with 2116 sequences, total weight= 2116 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01835 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w23A/info/1w23A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w23A/nostruct-align/1w23A.t04-thin90.a2m.gz, have 34386 columns in 142 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n2eA/nostruct-align/1n2eA.t04-thin90.a2m.gz # 1n2eA.t04-thin90.a2m with 130 sequences, total weight= 14.7948 avg weight= 0.113806 40 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n2eA/info/1n2eA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n2eA/nostruct-align/1n2eA.t04-thin90.a2m.gz, have 34674 columns in 143 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eyeA/nostruct-align/1eyeA.t04-thin90.a2m.gz # 1eyeA.t04-thin90.a2m with 290 sequences, total weight= 108.159 avg weight= 0.372961 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.303 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eyeA/info/1eyeA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1eyeA/nostruct-align/1eyeA.t04-thin90.a2m.gz, have 34930 columns in 144 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nscA/nostruct-align/1nscA.t04-thin90.a2m.gz # 1nscA.t04-thin90.a2m with 50 sequences, total weight= 5.6402 avg weight= 0.112804 20 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nscA/info/1nscA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nscA/nostruct-align/1nscA.t04-thin90.a2m.gz, have 35320 columns in 145 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hx0A/nostruct-align/1hx0A.t04-thin90.a2m.gz # 1hx0A.t04-thin90.a2m with 1257 sequences, total weight= 1257 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.979977 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hx0A/info/1hx0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hx0A/nostruct-align/1hx0A.t04-thin90.a2m.gz, have 35816 columns in 146 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qftA/nostruct-align/1qftA.t04-thin90.a2m.gz # 1qftA.t04-thin90.a2m with 12 sequences, total weight= 12 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10057 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qftA/info/1qftA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qftA/nostruct-align/1qftA.t04-thin90.a2m.gz, have 35991 columns in 147 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g8aA/nostruct-align/1g8aA.t04-thin90.a2m.gz # 1g8aA.t04-thin90.a2m with 2416 sequences, total weight= 2416 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.774565 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g8aA/info/1g8aA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g8aA/nostruct-align/1g8aA.t04-thin90.a2m.gz, have 36218 columns in 148 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b9mA/nostruct-align/1b9mA.t04-thin90.a2m.gz # 1b9mA.t04-thin90.a2m with 2252 sequences, total weight= 2252 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05684 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b9mA/info/1b9mA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1b9mA/nostruct-align/1b9mA.t04-thin90.a2m.gz, have 36476 columns in 149 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k2xB/nostruct-align/1k2xB.t04-thin90.a2m.gz # 1k2xB.t04-thin90.a2m with 85 sequences, total weight= 24.7352 avg weight= 0.291002 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k2xB/info/1k2xB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k2xB/nostruct-align/1k2xB.t04-thin90.a2m.gz, have 36611 columns in 150 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yfqA/nostruct-align/1yfqA.t04-thin90.a2m.gz # 1yfqA.t04-thin90.a2m with 1852 sequences, total weight= 1852 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01257 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yfqA/info/1yfqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1yfqA/nostruct-align/1yfqA.t04-thin90.a2m.gz, have 36953 columns in 151 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xkpC/nostruct-align/1xkpC.t04-thin90.a2m.gz # 1xkpC.t04-thin90.a2m with 7 sequences, total weight= 4.98993 avg weight= 0.712846 16 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xkpC/info/1xkpC.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xkpC/nostruct-align/1xkpC.t04-thin90.a2m.gz, have 37079 columns in 152 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dtdB/nostruct-align/1dtdB.t04-thin90.a2m.gz # 1dtdB.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.675221 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dtdB/info/1dtdB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dtdB/nostruct-align/1dtdB.t04-thin90.a2m.gz, have 37140 columns in 153 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g8eA/nostruct-align/1g8eA.t04-thin90.a2m.gz # 1g8eA.t04-thin90.a2m with 18 sequences, total weight= 5.92793 avg weight= 0.329329 22 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g8eA/info/1g8eA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g8eA/nostruct-align/1g8eA.t04-thin90.a2m.gz, have 37238 columns in 154 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q5zA/nostruct-align/1q5zA.t04-thin90.a2m.gz # 1q5zA.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.588933 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q5zA/info/1q5zA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q5zA/nostruct-align/1q5zA.t04-thin90.a2m.gz, have 37383 columns in 155 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s99A/nostruct-align/1s99A.t04-thin90.a2m.gz # 1s99A.t04-thin90.a2m with 3 sequences, total weight= 3 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2362 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s99A/info/1s99A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1s99A/nostruct-align/1s99A.t04-thin90.a2m.gz, have 37569 columns in 156 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w6uA/nostruct-align/1w6uA.t04-thin90.a2m.gz # 1w6uA.t04-thin90.a2m with 2369 sequences, total weight= 316.419 avg weight= 0.133567 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.33748 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w6uA/info/1w6uA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w6uA/nostruct-align/1w6uA.t04-thin90.a2m.gz, have 37857 columns in 157 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sluA/nostruct-align/1sluA.t04-thin90.a2m.gz # 1sluA.t04-thin90.a2m with 12 sequences, total weight= 5.14326 avg weight= 0.428605 18 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sluA/info/1sluA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sluA/nostruct-align/1sluA.t04-thin90.a2m.gz, have 37988 columns in 158 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1itxA/nostruct-align/1itxA.t04-thin90.a2m.gz # 1itxA.t04-thin90.a2m with 710 sequences, total weight= 710 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07312 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1itxA/info/1itxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1itxA/nostruct-align/1itxA.t04-thin90.a2m.gz, have 38407 columns in 159 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o97D/nostruct-align/1o97D.t04-thin90.a2m.gz # 1o97D.t04-thin90.a2m with 331 sequences, total weight= 47.8327 avg weight= 0.14451 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o97D/info/1o97D.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o97D/nostruct-align/1o97D.t04-thin90.a2m.gz, have 38722 columns in 160 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/4e/4eugA/nostruct-align/4eugA.t04-thin90.a2m.gz # 4eugA.t04-thin90.a2m with 177 sequences, total weight= 19.3748 avg weight= 0.109462 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/4e/4eugA/info/4eugA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/4e/4eugA/nostruct-align/4eugA.t04-thin90.a2m.gz, have 38947 columns in 161 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wrrA/nostruct-align/1wrrA.t04-thin90.a2m.gz # 1wrrA.t04-thin90.a2m with 50 sequences, total weight= 12.4492 avg weight= 0.248985 31 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wrrA/info/1wrrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wrrA/nostruct-align/1wrrA.t04-thin90.a2m.gz, have 39242 columns in 162 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vh5A/nostruct-align/1vh5A.t04-thin90.a2m.gz # 1vh5A.t04-thin90.a2m with 587 sequences, total weight= 587 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.927908 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vh5A/info/1vh5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vh5A/nostruct-align/1vh5A.t04-thin90.a2m.gz, have 39380 columns in 163 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vljA/nostruct-align/1vljA.t04-thin90.a2m.gz # 1vljA.t04-thin90.a2m with 714 sequences, total weight= 714 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16826 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vljA/info/1vljA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vljA/nostruct-align/1vljA.t04-thin90.a2m.gz, have 39778 columns in 164 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rjdA/nostruct-align/1rjdA.t04-thin90.a2m.gz # 1rjdA.t04-thin90.a2m with 189 sequences, total weight= 189 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02202 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rjdA/info/1rjdA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rjdA/nostruct-align/1rjdA.t04-thin90.a2m.gz, have 40106 columns in 165 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pwbA/nostruct-align/1pwbA.t04-thin90.a2m.gz # 1pwbA.t04-thin90.a2m with 1281 sequences, total weight= 1281 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.903321 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pwbA/info/1pwbA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pwbA/nostruct-align/1pwbA.t04-thin90.a2m.gz, have 40257 columns in 166 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cv8/nostruct-align/1cv8.t04-thin90.a2m.gz # 1cv8.t04-thin90.a2m with 5 sequences, total weight= 2.72305 avg weight= 0.54461 10 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cv8/info/1cv8.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1cv8/nostruct-align/1cv8.t04-thin90.a2m.gz, have 40430 columns in 167 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rylA/nostruct-align/1rylA.t04-thin90.a2m.gz # 1rylA.t04-thin90.a2m with 12 sequences, total weight= 12 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1871 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rylA/info/1rylA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rylA/nostruct-align/1rylA.t04-thin90.a2m.gz, have 40587 columns in 168 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1irdB/nostruct-align/1irdB.t04-thin90.a2m.gz # 1irdB.t04-thin90.a2m with 772 sequences, total weight= 461.937 avg weight= 0.598363 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31044 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1irdB/info/1irdB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1irdB/nostruct-align/1irdB.t04-thin90.a2m.gz, have 40733 columns in 169 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hbnB/nostruct-align/1hbnB.t04-thin90.a2m.gz # 1hbnB.t04-thin90.a2m with 15 sequences, total weight= 3.30814 avg weight= 0.220543 14 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hbnB/info/1hbnB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hbnB/nostruct-align/1hbnB.t04-thin90.a2m.gz, have 41175 columns in 170 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j3wA/nostruct-align/1j3wA.t04-thin90.a2m.gz # 1j3wA.t04-thin90.a2m with 7 sequences, total weight= 6.61148 avg weight= 0.944497 14 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j3wA/info/1j3wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j3wA/nostruct-align/1j3wA.t04-thin90.a2m.gz, have 41309 columns in 171 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1twdA/nostruct-align/1twdA.t04-thin90.a2m.gz # 1twdA.t04-thin90.a2m with 64 sequences, total weight= 19.9047 avg weight= 0.311011 41 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1twdA/info/1twdA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1twdA/nostruct-align/1twdA.t04-thin90.a2m.gz, have 41543 columns in 172 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dmhA/nostruct-align/1dmhA.t04-thin90.a2m.gz # 1dmhA.t04-thin90.a2m with 231 sequences, total weight= 147.903 avg weight= 0.640274 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30083 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dmhA/info/1dmhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dmhA/nostruct-align/1dmhA.t04-thin90.a2m.gz, have 41852 columns in 173 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xffA/nostruct-align/1xffA.t04-thin90.a2m.gz # 1xffA.t04-thin90.a2m with 935 sequences, total weight= 935 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1751 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xffA/info/1xffA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xffA/nostruct-align/1xffA.t04-thin90.a2m.gz, have 42090 columns in 174 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1ka1A/nostruct-align/1ka1A.t04-thin90.a2m.gz # 1ka1A.t04-thin90.a2m with 520 sequences, total weight= 520 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14228 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1ka1A/info/1ka1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1ka1A/nostruct-align/1ka1A.t04-thin90.a2m.gz, have 42444 columns in 175 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pq1A/nostruct-align/1pq1A.t04-thin90.a2m.gz # 1pq1A.t04-thin90.a2m with 86 sequences, total weight= 86 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20135 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pq1A/info/1pq1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pq1A/nostruct-align/1pq1A.t04-thin90.a2m.gz, have 42591 columns in 176 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ejdA/nostruct-align/1ejdA.t04-thin90.a2m.gz # 1ejdA.t04-thin90.a2m with 371 sequences, total weight= 82.2145 avg weight= 0.221602 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30206 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ejdA/info/1ejdA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1ejdA/nostruct-align/1ejdA.t04-thin90.a2m.gz, have 43010 columns in 177 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1el5A/nostruct-align/1el5A.t04-thin90.a2m.gz # 1el5A.t04-thin90.a2m with 2283 sequences, total weight= 2283 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.783125 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1el5A/info/1el5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1el5A/nostruct-align/1el5A.t04-thin90.a2m.gz, have 43395 columns in 178 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ursA/nostruct-align/1ursA.t04-thin90.a2m.gz # 1ursA.t04-thin90.a2m with 1420 sequences, total weight= 1420 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.843613 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ursA/info/1ursA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ursA/nostruct-align/1ursA.t04-thin90.a2m.gz, have 43761 columns in 179 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1svsA/nostruct-align/1svsA.t04-thin90.a2m.gz # 1svsA.t04-thin90.a2m with 593 sequences, total weight= 155.102 avg weight= 0.261554 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30321 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1svsA/info/1svsA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1svsA/nostruct-align/1svsA.t04-thin90.a2m.gz, have 44077 columns in 180 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q35A/nostruct-align/1q35A.t04-thin90.a2m.gz # 1q35A.t04-thin90.a2m with 1436 sequences, total weight= 1436 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.840902 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q35A/info/1q35A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q35A/nostruct-align/1q35A.t04-thin90.a2m.gz, have 44394 columns in 181 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gnuA/nostruct-align/1gnuA.t04-thin90.a2m.gz # 1gnuA.t04-thin90.a2m with 48 sequences, total weight= 8.56654 avg weight= 0.17847 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gnuA/info/1gnuA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gnuA/nostruct-align/1gnuA.t04-thin90.a2m.gz, have 44511 columns in 182 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhh/nostruct-align/1vhh.t04-thin90.a2m.gz # 1vhh.t04-thin90.a2m with 27 sequences, total weight= 3.93395 avg weight= 0.145702 15 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhh/info/1vhh.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vhh/nostruct-align/1vhh.t04-thin90.a2m.gz, have 44668 columns in 183 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gcqC/nostruct-align/1gcqC.t04-thin90.a2m.gz # 1gcqC.t04-thin90.a2m with 71 sequences, total weight= 26.0495 avg weight= 0.366895 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gcqC/info/1gcqC.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gcqC/nostruct-align/1gcqC.t04-thin90.a2m.gz, have 44737 columns in 184 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g2bA/nostruct-align/1g2bA.t04-thin90.a2m.gz # 1g2bA.t04-thin90.a2m with 57 sequences, total weight= 19.0088 avg weight= 0.333488 40 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g2bA/info/1g2bA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g2bA/nostruct-align/1g2bA.t04-thin90.a2m.gz, have 44799 columns in 185 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oi7A/nostruct-align/1oi7A.t04-thin90.a2m.gz # 1oi7A.t04-thin90.a2m with 335 sequences, total weight= 124.169 avg weight= 0.370655 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3027 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oi7A/info/1oi7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oi7A/nostruct-align/1oi7A.t04-thin90.a2m.gz, have 45069 columns in 186 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v77A/nostruct-align/1v77A.t04-thin90.a2m.gz # 1v77A.t04-thin90.a2m with 62 sequences, total weight= 62 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.146 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v77A/info/1v77A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v77A/nostruct-align/1v77A.t04-thin90.a2m.gz, have 45271 columns in 187 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l7lA/nostruct-align/1l7lA.t04-thin90.a2m.gz # 1l7lA.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0258 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l7lA/info/1l7lA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1l7lA/nostruct-align/1l7lA.t04-thin90.a2m.gz, have 45392 columns in 188 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rvkA/nostruct-align/1rvkA.t04-thin90.a2m.gz # 1rvkA.t04-thin90.a2m with 766 sequences, total weight= 766 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18903 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rvkA/info/1rvkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rvkA/nostruct-align/1rvkA.t04-thin90.a2m.gz, have 45773 columns in 189 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sdsA/nostruct-align/1sdsA.t04-thin90.a2m.gz # 1sdsA.t04-thin90.a2m with 327 sequences, total weight= 310.194 avg weight= 0.948605 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30057 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sdsA/info/1sdsA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sdsA/nostruct-align/1sdsA.t04-thin90.a2m.gz, have 45888 columns in 190 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xpmA/nostruct-align/1xpmA.t04-thin90.a2m.gz # 1xpmA.t04-thin90.a2m with 1606 sequences, total weight= 1606 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08935 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xpmA/info/1xpmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xpmA/nostruct-align/1xpmA.t04-thin90.a2m.gz, have 46277 columns in 191 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1ifc/nostruct-align/1ifc.t04-thin90.a2m.gz # 1ifc.t04-thin90.a2m with 152 sequences, total weight= 34.9025 avg weight= 0.229622 44 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1ifc/info/1ifc.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1ifc/nostruct-align/1ifc.t04-thin90.a2m.gz, have 46408 columns in 192 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kolA/nostruct-align/1kolA.t04-thin90.a2m.gz # 1kolA.t04-thin90.a2m with 1855 sequences, total weight= 1855 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19194 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kolA/info/1kolA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kolA/nostruct-align/1kolA.t04-thin90.a2m.gz, have 46804 columns in 193 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lxjA/nostruct-align/1lxjA.t04-thin90.a2m.gz # 1lxjA.t04-thin90.a2m with 57 sequences, total weight= 26.8345 avg weight= 0.470781 38 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lxjA/info/1lxjA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lxjA/nostruct-align/1lxjA.t04-thin90.a2m.gz, have 46908 columns in 194 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54C/nostruct-align/1v54C.t04-thin90.a2m.gz # 1v54C.t04-thin90.a2m with 627 sequences, total weight= 71.3304 avg weight= 0.113765 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30072 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54C/info/1v54C.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v54C/nostruct-align/1v54C.t04-thin90.a2m.gz, have 47167 columns in 195 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dusA/nostruct-align/1dusA.t04-thin90.a2m.gz # 1dusA.t04-thin90.a2m with 2306 sequences, total weight= 2306 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.818444 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dusA/info/1dusA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dusA/nostruct-align/1dusA.t04-thin90.a2m.gz, have 47361 columns in 196 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vl2A/nostruct-align/1vl2A.t04-thin90.a2m.gz # 1vl2A.t04-thin90.a2m with 1105 sequences, total weight= 1105 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10809 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vl2A/info/1vl2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vl2A/nostruct-align/1vl2A.t04-thin90.a2m.gz, have 47759 columns in 197 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1viaA/nostruct-align/1viaA.t04-thin90.a2m.gz # 1viaA.t04-thin90.a2m with 2166 sequences, total weight= 2166 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.889423 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1viaA/info/1viaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1viaA/nostruct-align/1viaA.t04-thin90.a2m.gz, have 47920 columns in 198 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pb7A/nostruct-align/1pb7A.t04-thin90.a2m.gz # 1pb7A.t04-thin90.a2m with 1344 sequences, total weight= 1344 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.93162 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pb7A/info/1pb7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pb7A/nostruct-align/1pb7A.t04-thin90.a2m.gz, have 48201 columns in 199 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lyvA/nostruct-align/1lyvA.t04-thin90.a2m.gz # 1lyvA.t04-thin90.a2m with 668 sequences, total weight= 668 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05574 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lyvA/info/1lyvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lyvA/nostruct-align/1lyvA.t04-thin90.a2m.gz, have 48484 columns in 200 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lb3A/nostruct-align/1lb3A.t04-thin90.a2m.gz # 1lb3A.t04-thin90.a2m with 306 sequences, total weight= 306 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29622 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lb3A/info/1lb3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lb3A/nostruct-align/1lb3A.t04-thin90.a2m.gz, have 48651 columns in 201 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c3pA/nostruct-align/1c3pA.t04-thin90.a2m.gz # 1c3pA.t04-thin90.a2m with 292 sequences, total weight= 207.529 avg weight= 0.710716 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30282 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c3pA/info/1c3pA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1c3pA/nostruct-align/1c3pA.t04-thin90.a2m.gz, have 49023 columns in 202 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b8zA/nostruct-align/1b8zA.t04-thin90.a2m.gz # 1b8zA.t04-thin90.a2m with 234 sequences, total weight= 13.7285 avg weight= 0.0586687 40 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b8zA/info/1b8zA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1b8zA/nostruct-align/1b8zA.t04-thin90.a2m.gz, have 49090 columns in 203 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wb4A/nostruct-align/1wb4A.t04-thin90.a2m.gz # 1wb4A.t04-thin90.a2m with 2019 sequences, total weight= 2019 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.904227 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wb4A/info/1wb4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wb4A/nostruct-align/1wb4A.t04-thin90.a2m.gz, have 49373 columns in 204 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uteA/nostruct-align/1uteA.t04-thin90.a2m.gz # 1uteA.t04-thin90.a2m with 1505 sequences, total weight= 1505 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.662665 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uteA/info/1uteA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uteA/nostruct-align/1uteA.t04-thin90.a2m.gz, have 49675 columns in 205 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1ks8A/nostruct-align/1ks8A.t04-thin90.a2m.gz # 1ks8A.t04-thin90.a2m with 225 sequences, total weight= 60.7173 avg weight= 0.269855 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30033 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1ks8A/info/1ks8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1ks8A/nostruct-align/1ks8A.t04-thin90.a2m.gz, have 50108 columns in 206 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1ssxA/nostruct-align/1ssxA.t04-thin90.a2m.gz # 1ssxA.t04-thin90.a2m with 1889 sequences, total weight= 500.054 avg weight= 0.264719 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32614 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1ssxA/info/1ssxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1ssxA/nostruct-align/1ssxA.t04-thin90.a2m.gz, have 50306 columns in 207 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ou8A/nostruct-align/1ou8A.t04-thin90.a2m.gz # 1ou8A.t04-thin90.a2m with 33 sequences, total weight= 7.85664 avg weight= 0.23808 26 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ou8A/info/1ou8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ou8A/nostruct-align/1ou8A.t04-thin90.a2m.gz, have 50412 columns in 208 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bbkL/nostruct-align/2bbkL.t04-thin90.a2m.gz # 2bbkL.t04-thin90.a2m with 10 sequences, total weight= 2.89195 avg weight= 0.289195 15 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bbkL/info/2bbkL.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2b/2bbkL/nostruct-align/2bbkL.t04-thin90.a2m.gz, have 50537 columns in 209 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3c/3chbD/nostruct-align/3chbD.t04-thin90.a2m.gz # 3chbD.t04-thin90.a2m with 4 sequences, total weight= 2.26217 avg weight= 0.565544 10 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3c/3chbD/info/3chbD.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/3c/3chbD/nostruct-align/3chbD.t04-thin90.a2m.gz, have 50640 columns in 210 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mpgA/nostruct-align/1mpgA.t04-thin90.a2m.gz # 1mpgA.t04-thin90.a2m with 533 sequences, total weight= 533 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04866 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mpgA/info/1mpgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mpgA/nostruct-align/1mpgA.t04-thin90.a2m.gz, have 50922 columns in 211 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1so7A/nostruct-align/1so7A.t04-thin90.a2m.gz # 1so7A.t04-thin90.a2m with 407 sequences, total weight= 407 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.816602 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1so7A/info/1so7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1so7A/nostruct-align/1so7A.t04-thin90.a2m.gz, have 51283 columns in 212 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1os6A/nostruct-align/1os6A.t04-thin90.a2m.gz # 1os6A.t04-thin90.a2m with 44 sequences, total weight= 29.7214 avg weight= 0.675485 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1os6A/info/1os6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1os6A/nostruct-align/1os6A.t04-thin90.a2m.gz, have 51354 columns in 213 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fjhA/nostruct-align/1fjhA.t04-thin90.a2m.gz # 1fjhA.t04-thin90.a2m with 2313 sequences, total weight= 144.481 avg weight= 0.0624646 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31529 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fjhA/info/1fjhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fjhA/nostruct-align/1fjhA.t04-thin90.a2m.gz, have 51590 columns in 214 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1obfO/nostruct-align/1obfO.t04-thin90.a2m.gz # 1obfO.t04-thin90.a2m with 854 sequences, total weight= 32.5776 avg weight= 0.0381471 38 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1obfO/info/1obfO.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1obfO/nostruct-align/1obfO.t04-thin90.a2m.gz, have 51925 columns in 215 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gvfA/nostruct-align/1gvfA.t04-thin90.a2m.gz # 1gvfA.t04-thin90.a2m with 203 sequences, total weight= 24.2822 avg weight= 0.119617 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gvfA/info/1gvfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gvfA/nostruct-align/1gvfA.t04-thin90.a2m.gz, have 52198 columns in 216 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pvmA/nostruct-align/1pvmA.t04-thin90.a2m.gz # 1pvmA.t04-thin90.a2m with 1901 sequences, total weight= 1901 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.948644 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pvmA/info/1pvmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pvmA/nostruct-align/1pvmA.t04-thin90.a2m.gz, have 52376 columns in 217 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pu6A/nostruct-align/1pu6A.t04-thin90.a2m.gz # 1pu6A.t04-thin90.a2m with 559 sequences, total weight= 559 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11199 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pu6A/info/1pu6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pu6A/nostruct-align/1pu6A.t04-thin90.a2m.gz, have 52593 columns in 218 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vfjA/nostruct-align/1vfjA.t04-thin90.a2m.gz # 1vfjA.t04-thin90.a2m with 244 sequences, total weight= 20.3891 avg weight= 0.083562 41 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vfjA/info/1vfjA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vfjA/nostruct-align/1vfjA.t04-thin90.a2m.gz, have 52709 columns in 219 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mixA/nostruct-align/1mixA.t04-thin90.a2m.gz # 1mixA.t04-thin90.a2m with 219 sequences, total weight= 219 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09645 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mixA/info/1mixA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mixA/nostruct-align/1mixA.t04-thin90.a2m.gz, have 52915 columns in 220 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eexB/nostruct-align/1eexB.t04-thin90.a2m.gz # 1eexB.t04-thin90.a2m with 18 sequences, total weight= 10.2206 avg weight= 0.567811 20 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eexB/info/1eexB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1eexB/nostruct-align/1eexB.t04-thin90.a2m.gz, have 53093 columns in 221 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i9zA/nostruct-align/1i9zA.t04-thin90.a2m.gz # 1i9zA.t04-thin90.a2m with 634 sequences, total weight= 634 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.919602 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i9zA/info/1i9zA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i9zA/nostruct-align/1i9zA.t04-thin90.a2m.gz, have 53429 columns in 222 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h16A/nostruct-align/1h16A.t04-thin90.a2m.gz # 1h16A.t04-thin90.a2m with 101 sequences, total weight= 50.6336 avg weight= 0.501323 42 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h16A/info/1h16A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h16A/nostruct-align/1h16A.t04-thin90.a2m.gz, have 54188 columns in 223 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fnlA/nostruct-align/1fnlA.t04-thin90.a2m.gz # 1fnlA.t04-thin90.a2m with 2967 sequences, total weight= 2967 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.933235 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fnlA/info/1fnlA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fnlA/nostruct-align/1fnlA.t04-thin90.a2m.gz, have 54361 columns in 224 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1epxA/nostruct-align/1epxA.t04-thin90.a2m.gz # 1epxA.t04-thin90.a2m with 174 sequences, total weight= 14.2376 avg weight= 0.0818251 31 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1epxA/info/1epxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1epxA/nostruct-align/1epxA.t04-thin90.a2m.gz, have 54718 columns in 225 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i2tA/nostruct-align/1i2tA.t04-thin90.a2m.gz # 1i2tA.t04-thin90.a2m with 51 sequences, total weight= 6.96158 avg weight= 0.136502 27 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i2tA/info/1i2tA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i2tA/nostruct-align/1i2tA.t04-thin90.a2m.gz, have 54779 columns in 226 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nnlA/nostruct-align/1nnlA.t04-thin90.a2m.gz # 1nnlA.t04-thin90.a2m with 1989 sequences, total weight= 1989 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04304 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nnlA/info/1nnlA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nnlA/nostruct-align/1nnlA.t04-thin90.a2m.gz, have 54984 columns in 227 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54G/nostruct-align/1v54G.t04-thin90.a2m.gz # 1v54G.t04-thin90.a2m with 29 sequences, total weight= 10.2826 avg weight= 0.354573 22 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54G/info/1v54G.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v54G/nostruct-align/1v54G.t04-thin90.a2m.gz, have 55068 columns in 228 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fk5A/nostruct-align/1fk5A.t04-thin90.a2m.gz # 1fk5A.t04-thin90.a2m with 189 sequences, total weight= 66.6315 avg weight= 0.352548 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.301 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fk5A/info/1fk5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fk5A/nostruct-align/1fk5A.t04-thin90.a2m.gz, have 55161 columns in 229 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1al3/nostruct-align/1al3.t04-thin90.a2m.gz # 1al3.t04-thin90.a2m with 2381 sequences, total weight= 2381 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02378 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1al3/info/1al3.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1al3/nostruct-align/1al3.t04-thin90.a2m.gz, have 55398 columns in 230 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tx4A/nostruct-align/1tx4A.t04-thin90.a2m.gz # 1tx4A.t04-thin90.a2m with 355 sequences, total weight= 355 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14087 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tx4A/info/1tx4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tx4A/nostruct-align/1tx4A.t04-thin90.a2m.gz, have 55594 columns in 231 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w2wA/nostruct-align/1w2wA.t04-thin90.a2m.gz # 1w2wA.t04-thin90.a2m with 101 sequences, total weight= 23.7671 avg weight= 0.235318 45 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w2wA/info/1w2wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w2wA/nostruct-align/1w2wA.t04-thin90.a2m.gz, have 55805 columns in 232 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r0mA/nostruct-align/1r0mA.t04-thin90.a2m.gz # 1r0mA.t04-thin90.a2m with 840 sequences, total weight= 840 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20066 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r0mA/info/1r0mA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r0mA/nostruct-align/1r0mA.t04-thin90.a2m.gz, have 56165 columns in 233 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nthA/nostruct-align/1nthA.t04-thin90.a2m.gz # 1nthA.t04-thin90.a2m with 4 sequences, total weight= 3.84705 avg weight= 0.961761 6 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nthA/info/1nthA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nthA/nostruct-align/1nthA.t04-thin90.a2m.gz, have 56622 columns in 234 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c4qA/nostruct-align/1c4qA.t04-thin90.a2m.gz # 1c4qA.t04-thin90.a2m with 10 sequences, total weight= 3.04854 avg weight= 0.304854 10 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c4qA/info/1c4qA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1c4qA/nostruct-align/1c4qA.t04-thin90.a2m.gz, have 56691 columns in 235 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jzgA/nostruct-align/1jzgA.t04-thin90.a2m.gz # 1jzgA.t04-thin90.a2m with 28 sequences, total weight= 6.48222 avg weight= 0.231508 23 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jzgA/info/1jzgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jzgA/nostruct-align/1jzgA.t04-thin90.a2m.gz, have 56819 columns in 236 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n62A/nostruct-align/1n62A.t04-thin90.a2m.gz # 1n62A.t04-thin90.a2m with 439 sequences, total weight= 159.593 avg weight= 0.363537 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30701 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n62A/info/1n62A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n62A/nostruct-align/1n62A.t04-thin90.a2m.gz, have 56980 columns in 237 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h0hB/nostruct-align/1h0hB.t04-thin90.a2m.gz # 1h0hB.t04-thin90.a2m with 978 sequences, total weight= 978 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.99917 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h0hB/info/1h0hB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h0hB/nostruct-align/1h0hB.t04-thin90.a2m.gz, have 57194 columns in 238 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mg4A/nostruct-align/1mg4A.t04-thin90.a2m.gz # 1mg4A.t04-thin90.a2m with 50 sequences, total weight= 31.5421 avg weight= 0.630842 42 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mg4A/info/1mg4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mg4A/nostruct-align/1mg4A.t04-thin90.a2m.gz, have 57295 columns in 239 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1omrA/nostruct-align/1omrA.t04-thin90.a2m.gz # 1omrA.t04-thin90.a2m with 1462 sequences, total weight= 1462 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.876105 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1omrA/info/1omrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1omrA/nostruct-align/1omrA.t04-thin90.a2m.gz, have 57496 columns in 240 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f60A/nostruct-align/1f60A.t04-thin90.a2m.gz # 1f60A.t04-thin90.a2m with 616 sequences, total weight= 20.9673 avg weight= 0.0340379 43 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f60A/info/1f60A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f60A/nostruct-align/1f60A.t04-thin90.a2m.gz, have 57936 columns in 241 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gvp/nostruct-align/1gvp.t04-thin90.a2m.gz # 1gvp.t04-thin90.a2m with 9 sequences, total weight= 4.74124 avg weight= 0.526805 15 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gvp/info/1gvp.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gvp/nostruct-align/1gvp.t04-thin90.a2m.gz, have 58023 columns in 242 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1knmA/nostruct-align/1knmA.t04-thin90.a2m.gz # 1knmA.t04-thin90.a2m with 263 sequences, total weight= 263 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0694 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1knmA/info/1knmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1knmA/nostruct-align/1knmA.t04-thin90.a2m.gz, have 58152 columns in 243 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y6xA/nostruct-align/1y6xA.t04-thin90.a2m.gz # 1y6xA.t04-thin90.a2m with 167 sequences, total weight= 14.6136 avg weight= 0.0875066 41 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y6xA/info/1y6xA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1y6xA/nostruct-align/1y6xA.t04-thin90.a2m.gz, have 58239 columns in 244 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b9wA/nostruct-align/1b9wA.t04-thin90.a2m.gz # 1b9wA.t04-thin90.a2m with 22 sequences, total weight= 4.61592 avg weight= 0.209814 23 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b9wA/info/1b9wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1b9wA/nostruct-align/1b9wA.t04-thin90.a2m.gz, have 58328 columns in 245 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o9gA/nostruct-align/1o9gA.t04-thin90.a2m.gz # 1o9gA.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.624727 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o9gA/info/1o9gA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o9gA/nostruct-align/1o9gA.t04-thin90.a2m.gz, have 58577 columns in 246 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fjjA/nostruct-align/1fjjA.t04-thin90.a2m.gz # 1fjjA.t04-thin90.a2m with 212 sequences, total weight= 212 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23353 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fjjA/info/1fjjA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fjjA/nostruct-align/1fjjA.t04-thin90.a2m.gz, have 58736 columns in 247 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1ccwB/nostruct-align/1ccwB.t04-thin90.a2m.gz # 1ccwB.t04-thin90.a2m with 120 sequences, total weight= 57.5132 avg weight= 0.479276 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1ccwB/info/1ccwB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1ccwB/nostruct-align/1ccwB.t04-thin90.a2m.gz, have 59219 columns in 248 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1josA/nostruct-align/1josA.t04-thin90.a2m.gz # 1josA.t04-thin90.a2m with 141 sequences, total weight= 36.7503 avg weight= 0.26064 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1josA/info/1josA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1josA/nostruct-align/1josA.t04-thin90.a2m.gz, have 59319 columns in 249 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1obdA/nostruct-align/1obdA.t04-thin90.a2m.gz # 1obdA.t04-thin90.a2m with 176 sequences, total weight= 41.0364 avg weight= 0.233161 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1obdA/info/1obdA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1obdA/nostruct-align/1obdA.t04-thin90.a2m.gz, have 59617 columns in 250 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xmtA/nostruct-align/1xmtA.t04-thin90.a2m.gz # 1xmtA.t04-thin90.a2m with 83 sequences, total weight= 46.6059 avg weight= 0.561517 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xmtA/info/1xmtA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xmtA/nostruct-align/1xmtA.t04-thin90.a2m.gz, have 59712 columns in 251 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rx0A/nostruct-align/1rx0A.t04-thin90.a2m.gz # 1rx0A.t04-thin90.a2m with 1519 sequences, total weight= 1519 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11001 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rx0A/info/1rx0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rx0A/nostruct-align/1rx0A.t04-thin90.a2m.gz, have 60096 columns in 252 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p99A/nostruct-align/1p99A.t04-thin90.a2m.gz # 1p99A.t04-thin90.a2m with 554 sequences, total weight= 554 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06749 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p99A/info/1p99A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p99A/nostruct-align/1p99A.t04-thin90.a2m.gz, have 60351 columns in 253 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2l/2lisA/nostruct-align/2lisA.t04-thin90.a2m.gz # 2lisA.t04-thin90.a2m with 28 sequences, total weight= 11.0021 avg weight= 0.392932 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2l/2lisA/info/2lisA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2l/2lisA/nostruct-align/2lisA.t04-thin90.a2m.gz, have 60482 columns in 254 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vfyA/nostruct-align/1vfyA.t04-thin90.a2m.gz # 1vfyA.t04-thin90.a2m with 184 sequences, total weight= 40.9269 avg weight= 0.222429 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3015 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vfyA/info/1vfyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vfyA/nostruct-align/1vfyA.t04-thin90.a2m.gz, have 60549 columns in 255 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h72C/nostruct-align/1h72C.t04-thin90.a2m.gz # 1h72C.t04-thin90.a2m with 654 sequences, total weight= 654 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.995409 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h72C/info/1h72C.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h72C/nostruct-align/1h72C.t04-thin90.a2m.gz, have 60845 columns in 256 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1olrA/nostruct-align/1olrA.t04-thin90.a2m.gz # 1olrA.t04-thin90.a2m with 55 sequences, total weight= 28.9999 avg weight= 0.527271 40 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1olrA/info/1olrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1olrA/nostruct-align/1olrA.t04-thin90.a2m.gz, have 61069 columns in 257 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nycA/nostruct-align/1nycA.t04-thin90.a2m.gz # 1nycA.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04307 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nycA/info/1nycA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nycA/nostruct-align/1nycA.t04-thin90.a2m.gz, have 61180 columns in 258 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gs5A/nostruct-align/1gs5A.t04-thin90.a2m.gz # 1gs5A.t04-thin90.a2m with 823 sequences, total weight= 823 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16762 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gs5A/info/1gs5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gs5A/nostruct-align/1gs5A.t04-thin90.a2m.gz, have 61438 columns in 259 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h5uA/nostruct-align/1h5uA.t04-thin90.a2m.gz # 1h5uA.t04-thin90.a2m with 291 sequences, total weight= 89.5773 avg weight= 0.307826 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30058 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h5uA/info/1h5uA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h5uA/nostruct-align/1h5uA.t04-thin90.a2m.gz, have 62249 columns in 260 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lfwA/nostruct-align/1lfwA.t04-thin90.a2m.gz # 1lfwA.t04-thin90.a2m with 1283 sequences, total weight= 1283 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.97039 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lfwA/info/1lfwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lfwA/nostruct-align/1lfwA.t04-thin90.a2m.gz, have 62717 columns in 261 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/7o/7odcA/nostruct-align/7odcA.t04-thin90.a2m.gz # 7odcA.t04-thin90.a2m with 646 sequences, total weight= 646 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06376 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/7o/7odcA/info/7odcA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/7o/7odcA/nostruct-align/7odcA.t04-thin90.a2m.gz, have 63104 columns in 262 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rm6A/nostruct-align/1rm6A.t04-thin90.a2m.gz # 1rm6A.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.615207 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rm6A/info/1rm6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rm6A/nostruct-align/1rm6A.t04-thin90.a2m.gz, have 63865 columns in 263 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pa7A/nostruct-align/1pa7A.t04-thin90.a2m.gz # 1pa7A.t04-thin90.a2m with 46 sequences, total weight= 12.6428 avg weight= 0.274844 27 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pa7A/info/1pa7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pa7A/nostruct-align/1pa7A.t04-thin90.a2m.gz, have 63995 columns in 264 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d8wA/nostruct-align/1d8wA.t04-thin90.a2m.gz # 1d8wA.t04-thin90.a2m with 89 sequences, total weight= 48.379 avg weight= 0.543584 42 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d8wA/info/1d8wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d8wA/nostruct-align/1d8wA.t04-thin90.a2m.gz, have 64397 columns in 265 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bteA/nostruct-align/1bteA.t04-thin90.a2m.gz # 1bteA.t04-thin90.a2m with 20 sequences, total weight= 14.4493 avg weight= 0.722464 28 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bteA/info/1bteA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1bteA/nostruct-align/1bteA.t04-thin90.a2m.gz, have 64489 columns in 266 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kt6A/nostruct-align/1kt6A.t04-thin90.a2m.gz # 1kt6A.t04-thin90.a2m with 269 sequences, total weight= 269 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.939397 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kt6A/info/1kt6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kt6A/nostruct-align/1kt6A.t04-thin90.a2m.gz, have 64664 columns in 267 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mof/nostruct-align/1mof.t04-thin90.a2m.gz # 1mof.t04-thin90.a2m with 38 sequences, total weight= 6.77211 avg weight= 0.178213 20 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mof/info/1mof.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mof/nostruct-align/1mof.t04-thin90.a2m.gz, have 64717 columns in 268 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vjoA/nostruct-align/1vjoA.t04-thin90.a2m.gz # 1vjoA.t04-thin90.a2m with 2180 sequences, total weight= 2180 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.958628 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vjoA/info/1vjoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vjoA/nostruct-align/1vjoA.t04-thin90.a2m.gz, have 65094 columns in 269 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mqvA/nostruct-align/1mqvA.t04-thin90.a2m.gz # 1mqvA.t04-thin90.a2m with 44 sequences, total weight= 40.2064 avg weight= 0.913781 37 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mqvA/info/1mqvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mqvA/nostruct-align/1mqvA.t04-thin90.a2m.gz, have 65217 columns in 270 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t0bA/nostruct-align/1t0bA.t04-thin90.a2m.gz # 1t0bA.t04-thin90.a2m with 65 sequences, total weight= 65 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08729 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t0bA/info/1t0bA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t0bA/nostruct-align/1t0bA.t04-thin90.a2m.gz, have 65457 columns in 271 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r45A/nostruct-align/1r45A.t04-thin90.a2m.gz # 1r45A.t04-thin90.a2m with 36 sequences, total weight= 36 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2245 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r45A/info/1r45A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r45A/nostruct-align/1r45A.t04-thin90.a2m.gz, have 65658 columns in 272 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3h/3htsB/nostruct-align/3htsB.t04-thin90.a2m.gz # 3htsB.t04-thin90.a2m with 106 sequences, total weight= 17.5227 avg weight= 0.165308 37 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3h/3htsB/info/3htsB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/3h/3htsB/nostruct-align/3htsB.t04-thin90.a2m.gz, have 65740 columns in 273 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1c75A/nostruct-align/1c75A.t04-thin90.a2m.gz # 1c75A.t04-thin90.a2m with 503 sequences, total weight= 243.648 avg weight= 0.48439 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31015 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1c75A/info/1c75A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1c75A/nostruct-align/1c75A.t04-thin90.a2m.gz, have 65811 columns in 274 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yleA/nostruct-align/1yleA.t04-thin90.a2m.gz # 1yleA.t04-thin90.a2m with 38 sequences, total weight= 8.21222 avg weight= 0.216111 29 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yleA/info/1yleA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1yleA/nostruct-align/1yleA.t04-thin90.a2m.gz, have 66141 columns in 275 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vknA/nostruct-align/1vknA.t04-thin90.a2m.gz # 1vknA.t04-thin90.a2m with 1463 sequences, total weight= 1463 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25006 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vknA/info/1vknA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vknA/nostruct-align/1vknA.t04-thin90.a2m.gz, have 66481 columns in 276 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dg6A/nostruct-align/1dg6A.t04-thin90.a2m.gz # 1dg6A.t04-thin90.a2m with 93 sequences, total weight= 56.8786 avg weight= 0.611598 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dg6A/info/1dg6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dg6A/nostruct-align/1dg6A.t04-thin90.a2m.gz, have 66630 columns in 277 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a62/nostruct-align/1a62.t04-thin90.a2m.gz # 1a62.t04-thin90.a2m with 84 sequences, total weight= 12.7083 avg weight= 0.151289 36 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a62/info/1a62.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1a62/nostruct-align/1a62.t04-thin90.a2m.gz, have 66755 columns in 278 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m55A/nostruct-align/1m55A.t04-thin90.a2m.gz # 1m55A.t04-thin90.a2m with 10 sequences, total weight= 10 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27935 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m55A/info/1m55A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m55A/nostruct-align/1m55A.t04-thin90.a2m.gz, have 66948 columns in 279 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bgc/nostruct-align/1bgc.t04-thin90.a2m.gz # 1bgc.t04-thin90.a2m with 40 sequences, total weight= 15.568 avg weight= 0.389201 28 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bgc/info/1bgc.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1bgc/nostruct-align/1bgc.t04-thin90.a2m.gz, have 67106 columns in 280 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tu7A/nostruct-align/1tu7A.t04-thin90.a2m.gz # 1tu7A.t04-thin90.a2m with 2118 sequences, total weight= 2118 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00332 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tu7A/info/1tu7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tu7A/nostruct-align/1tu7A.t04-thin90.a2m.gz, have 67314 columns in 281 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qxyA/nostruct-align/1qxyA.t04-thin90.a2m.gz # 1qxyA.t04-thin90.a2m with 791 sequences, total weight= 791 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17807 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qxyA/info/1qxyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qxyA/nostruct-align/1qxyA.t04-thin90.a2m.gz, have 67563 columns in 282 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1shuX/nostruct-align/1shuX.t04-thin90.a2m.gz # 1shuX.t04-thin90.a2m with 1362 sequences, total weight= 1362 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.930769 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1shuX/info/1shuX.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1shuX/nostruct-align/1shuX.t04-thin90.a2m.gz, have 67744 columns in 283 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1f9zA/nostruct-align/1f9zA.t04-thin90.a2m.gz # 1f9zA.t04-thin90.a2m with 1734 sequences, total weight= 1734 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.888533 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1f9zA/info/1f9zA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1f9zA/nostruct-align/1f9zA.t04-thin90.a2m.gz, have 67872 columns in 284 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h8uA/nostruct-align/1h8uA.t04-thin90.a2m.gz # 1h8uA.t04-thin90.a2m with 1125 sequences, total weight= 1125 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04053 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h8uA/info/1h8uA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h8uA/nostruct-align/1h8uA.t04-thin90.a2m.gz, have 67987 columns in 285 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uoyA/nostruct-align/1uoyA.t04-thin90.a2m.gz # 1uoyA.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.691603 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uoyA/info/1uoyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uoyA/nostruct-align/1uoyA.t04-thin90.a2m.gz, have 68051 columns in 286 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j54A/nostruct-align/1j54A.t04-thin90.a2m.gz # 1j54A.t04-thin90.a2m with 650 sequences, total weight= 650 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06023 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j54A/info/1j54A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j54A/nostruct-align/1j54A.t04-thin90.a2m.gz, have 68225 columns in 287 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rkiA/nostruct-align/1rkiA.t04-thin90.a2m.gz # 1rkiA.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.625635 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rkiA/info/1rkiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rkiA/nostruct-align/1rkiA.t04-thin90.a2m.gz, have 68326 columns in 288 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1ji7A/nostruct-align/1ji7A.t04-thin90.a2m.gz # 1ji7A.t04-thin90.a2m with 43 sequences, total weight= 28.0351 avg weight= 0.65198 37 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1ji7A/info/1ji7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1ji7A/nostruct-align/1ji7A.t04-thin90.a2m.gz, have 68403 columns in 289 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wd3A/nostruct-align/1wd3A.t04-thin90.a2m.gz # 1wd3A.t04-thin90.a2m with 43 sequences, total weight= 25.7977 avg weight= 0.599948 25 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wd3A/info/1wd3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wd3A/nostruct-align/1wd3A.t04-thin90.a2m.gz, have 68885 columns in 290 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q74A/nostruct-align/1q74A.t04-thin90.a2m.gz # 1q74A.t04-thin90.a2m with 190 sequences, total weight= 190 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0103 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q74A/info/1q74A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q74A/nostruct-align/1q74A.t04-thin90.a2m.gz, have 69172 columns in 291 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r7aA/nostruct-align/1r7aA.t04-thin90.a2m.gz # 1r7aA.t04-thin90.a2m with 1275 sequences, total weight= 1275 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01837 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r7aA/info/1r7aA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r7aA/nostruct-align/1r7aA.t04-thin90.a2m.gz, have 69676 columns in 292 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wd7A/nostruct-align/1wd7A.t04-thin90.a2m.gz # 1wd7A.t04-thin90.a2m with 230 sequences, total weight= 230 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09377 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wd7A/info/1wd7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wd7A/nostruct-align/1wd7A.t04-thin90.a2m.gz, have 69930 columns in 293 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sc3A/nostruct-align/1sc3A.t04-thin90.a2m.gz # 1sc3A.t04-thin90.a2m with 148 sequences, total weight= 78.2759 avg weight= 0.528891 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30077 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sc3A/info/1sc3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sc3A/nostruct-align/1sc3A.t04-thin90.a2m.gz, have 70103 columns in 294 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jyhA/nostruct-align/1jyhA.t04-thin90.a2m.gz # 1jyhA.t04-thin90.a2m with 159 sequences, total weight= 159 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01758 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jyhA/info/1jyhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jyhA/nostruct-align/1jyhA.t04-thin90.a2m.gz, have 70258 columns in 295 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m9zA/nostruct-align/1m9zA.t04-thin90.a2m.gz # 1m9zA.t04-thin90.a2m with 9 sequences, total weight= 3.52047 avg weight= 0.391164 14 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m9zA/info/1m9zA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m9zA/nostruct-align/1m9zA.t04-thin90.a2m.gz, have 70363 columns in 296 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54A/nostruct-align/1v54A.t04-thin90.a2m.gz # 1v54A.t04-thin90.a2m with 497 sequences, total weight= 5.62025 avg weight= 0.0113084 27 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54A/info/1v54A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v54A/nostruct-align/1v54A.t04-thin90.a2m.gz, have 70877 columns in 297 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wddS/nostruct-align/1wddS.t04-thin90.a2m.gz # 1wddS.t04-thin90.a2m with 184 sequences, total weight= 11.3986 avg weight= 0.061949 31 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wddS/info/1wddS.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wddS/nostruct-align/1wddS.t04-thin90.a2m.gz, have 70999 columns in 298 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1udzA/nostruct-align/1udzA.t04-thin90.a2m.gz # 1udzA.t04-thin90.a2m with 620 sequences, total weight= 267.171 avg weight= 0.430921 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31091 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1udzA/info/1udzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1udzA/nostruct-align/1udzA.t04-thin90.a2m.gz, have 71178 columns in 299 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1luzA/nostruct-align/1luzA.t04-thin90.a2m.gz # 1luzA.t04-thin90.a2m with 9 sequences, total weight= 5.99834 avg weight= 0.666482 19 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1luzA/info/1luzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1luzA/nostruct-align/1luzA.t04-thin90.a2m.gz, have 71263 columns in 300 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dc1A/nostruct-align/1dc1A.t04-thin90.a2m.gz # 1dc1A.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14377 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dc1A/info/1dc1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dc1A/nostruct-align/1dc1A.t04-thin90.a2m.gz, have 71573 columns in 301 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rdqE/nostruct-align/1rdqE.t04-thin90.a2m.gz # 1rdqE.t04-thin90.a2m with 1435 sequences, total weight= 364.327 avg weight= 0.253886 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32932 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rdqE/info/1rdqE.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rdqE/nostruct-align/1rdqE.t04-thin90.a2m.gz, have 71915 columns in 302 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1ye8A/nostruct-align/1ye8A.t04-thin90.a2m.gz # 1ye8A.t04-thin90.a2m with 2222 sequences, total weight= 103.372 avg weight= 0.0465222 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32308 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1ye8A/info/1ye8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1ye8A/nostruct-align/1ye8A.t04-thin90.a2m.gz, have 72087 columns in 303 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rliA/nostruct-align/1rliA.t04-thin90.a2m.gz # 1rliA.t04-thin90.a2m with 857 sequences, total weight= 857 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.986474 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rliA/info/1rliA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rliA/nostruct-align/1rliA.t04-thin90.a2m.gz, have 72243 columns in 304 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dosA/nostruct-align/1dosA.t04-thin90.a2m.gz # 1dosA.t04-thin90.a2m with 221 sequences, total weight= 43.0398 avg weight= 0.19475 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dosA/info/1dosA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dosA/nostruct-align/1dosA.t04-thin90.a2m.gz, have 72601 columns in 305 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fm0E/nostruct-align/1fm0E.t04-thin90.a2m.gz # 1fm0E.t04-thin90.a2m with 128 sequences, total weight= 33.2864 avg weight= 0.26005 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fm0E/info/1fm0E.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fm0E/nostruct-align/1fm0E.t04-thin90.a2m.gz, have 72743 columns in 306 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iqzA/nostruct-align/1iqzA.t04-thin90.a2m.gz # 1iqzA.t04-thin90.a2m with 168 sequences, total weight= 168 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2383 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iqzA/info/1iqzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iqzA/nostruct-align/1iqzA.t04-thin90.a2m.gz, have 72824 columns in 307 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d7pM/nostruct-align/1d7pM.t04-thin90.a2m.gz # 1d7pM.t04-thin90.a2m with 154 sequences, total weight= 45.9551 avg weight= 0.29841 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d7pM/info/1d7pM.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d7pM/nostruct-align/1d7pM.t04-thin90.a2m.gz, have 72983 columns in 308 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qwoA/nostruct-align/1qwoA.t04-thin90.a2m.gz # 1qwoA.t04-thin90.a2m with 243 sequences, total weight= 243 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.946555 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qwoA/info/1qwoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qwoA/nostruct-align/1qwoA.t04-thin90.a2m.gz, have 73418 columns in 309 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lst/nostruct-align/1lst.t04-thin90.a2m.gz # 1lst.t04-thin90.a2m with 1479 sequences, total weight= 1479 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.902627 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lst/info/1lst.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lst/nostruct-align/1lst.t04-thin90.a2m.gz, have 73656 columns in 310 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hdkA/nostruct-align/1hdkA.t04-thin90.a2m.gz # 1hdkA.t04-thin90.a2m with 218 sequences, total weight= 218 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22248 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hdkA/info/1hdkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hdkA/nostruct-align/1hdkA.t04-thin90.a2m.gz, have 73795 columns in 311 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k1eA/nostruct-align/1k1eA.t04-thin90.a2m.gz # 1k1eA.t04-thin90.a2m with 196 sequences, total weight= 196 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2164 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k1eA/info/1k1eA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k1eA/nostruct-align/1k1eA.t04-thin90.a2m.gz, have 73972 columns in 312 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2h/2hft/nostruct-align/2hft.t04-thin90.a2m.gz # 2hft.t04-thin90.a2m with 161 sequences, total weight= 161 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.989503 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2h/2hft/info/2hft.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2h/2hft/nostruct-align/2hft.t04-thin90.a2m.gz, have 74177 columns in 313 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bkf/nostruct-align/1bkf.t04-thin90.a2m.gz # 1bkf.t04-thin90.a2m with 548 sequences, total weight= 96.3021 avg weight= 0.175734 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30401 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bkf/info/1bkf.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1bkf/nostruct-align/1bkf.t04-thin90.a2m.gz, have 74284 columns in 314 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m22A/nostruct-align/1m22A.t04-thin90.a2m.gz # 1m22A.t04-thin90.a2m with 597 sequences, total weight= 597 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2883 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m22A/info/1m22A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m22A/nostruct-align/1m22A.t04-thin90.a2m.gz, have 74771 columns in 315 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ew6A/nostruct-align/1ew6A.t04-thin90.a2m.gz # 1ew6A.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.568482 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ew6A/info/1ew6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1ew6A/nostruct-align/1ew6A.t04-thin90.a2m.gz, have 74908 columns in 316 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2n/2nacA/nostruct-align/2nacA.t04-thin90.a2m.gz # 2nacA.t04-thin90.a2m with 1392 sequences, total weight= 1392 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12638 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2n/2nacA/info/2nacA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2n/2nacA/nostruct-align/2nacA.t04-thin90.a2m.gz, have 75282 columns in 317 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h97A/nostruct-align/1h97A.t04-thin90.a2m.gz # 1h97A.t04-thin90.a2m with 637 sequences, total weight= 637 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29804 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h97A/info/1h97A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h97A/nostruct-align/1h97A.t04-thin90.a2m.gz, have 75429 columns in 318 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vd5A/nostruct-align/1vd5A.t04-thin90.a2m.gz # 1vd5A.t04-thin90.a2m with 179 sequences, total weight= 179 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.974322 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vd5A/info/1vd5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vd5A/nostruct-align/1vd5A.t04-thin90.a2m.gz, have 75806 columns in 319 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dp7P/nostruct-align/1dp7P.t04-thin90.a2m.gz # 1dp7P.t04-thin90.a2m with 25 sequences, total weight= 6.37922 avg weight= 0.255169 28 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dp7P/info/1dp7P.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dp7P/nostruct-align/1dp7P.t04-thin90.a2m.gz, have 75882 columns in 320 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sj1A/nostruct-align/1sj1A.t04-thin90.a2m.gz # 1sj1A.t04-thin90.a2m with 175 sequences, total weight= 74.8402 avg weight= 0.427659 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.301 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sj1A/info/1sj1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sj1A/nostruct-align/1sj1A.t04-thin90.a2m.gz, have 75948 columns in 321 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rz2A/nostruct-align/1rz2A.t04-thin90.a2m.gz # 1rz2A.t04-thin90.a2m with 11 sequences, total weight= 9.42696 avg weight= 0.856996 19 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rz2A/info/1rz2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rz2A/nostruct-align/1rz2A.t04-thin90.a2m.gz, have 76162 columns in 322 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tkeA/nostruct-align/1tkeA.t04-thin90.a2m.gz # 1tkeA.t04-thin90.a2m with 585 sequences, total weight= 428.085 avg weight= 0.73177 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3052 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tkeA/info/1tkeA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tkeA/nostruct-align/1tkeA.t04-thin90.a2m.gz, have 76386 columns in 323 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rhs/nostruct-align/1rhs.t04-thin90.a2m.gz # 1rhs.t04-thin90.a2m with 988 sequences, total weight= 988 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.975549 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rhs/info/1rhs.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rhs/nostruct-align/1rhs.t04-thin90.a2m.gz, have 76679 columns in 324 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iooA/nostruct-align/1iooA.t04-thin90.a2m.gz # 1iooA.t04-thin90.a2m with 456 sequences, total weight= 138.472 avg weight= 0.303666 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30537 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iooA/info/1iooA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iooA/nostruct-align/1iooA.t04-thin90.a2m.gz, have 76875 columns in 325 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k3xA/nostruct-align/1k3xA.t04-thin90.a2m.gz # 1k3xA.t04-thin90.a2m with 183 sequences, total weight= 58.1206 avg weight= 0.317599 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30035 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k3xA/info/1k3xA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k3xA/nostruct-align/1k3xA.t04-thin90.a2m.gz, have 77128 columns in 326 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rjoA/nostruct-align/1rjoA.t04-thin90.a2m.gz # 1rjoA.t04-thin90.a2m with 120 sequences, total weight= 48.8902 avg weight= 0.407418 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rjoA/info/1rjoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rjoA/nostruct-align/1rjoA.t04-thin90.a2m.gz, have 77748 columns in 327 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h75A/nostruct-align/1h75A.t04-thin90.a2m.gz # 1h75A.t04-thin90.a2m with 912 sequences, total weight= 912 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17729 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h75A/info/1h75A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h75A/nostruct-align/1h75A.t04-thin90.a2m.gz, have 77824 columns in 328 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oqvA/nostruct-align/1oqvA.t04-thin90.a2m.gz # 1oqvA.t04-thin90.a2m with 14 sequences, total weight= 4.6121 avg weight= 0.329436 17 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oqvA/info/1oqvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oqvA/nostruct-align/1oqvA.t04-thin90.a2m.gz, have 77995 columns in 329 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w53A/nostruct-align/1w53A.t04-thin90.a2m.gz # 1w53A.t04-thin90.a2m with 6 sequences, total weight= 3.84744 avg weight= 0.64124 14 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w53A/info/1w53A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w53A/nostruct-align/1w53A.t04-thin90.a2m.gz, have 78079 columns in 330 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n08A/nostruct-align/1n08A.t04-thin90.a2m.gz # 1n08A.t04-thin90.a2m with 170 sequences, total weight= 44.127 avg weight= 0.259571 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30047 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n08A/info/1n08A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n08A/nostruct-align/1n08A.t04-thin90.a2m.gz, have 78233 columns in 331 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uzbA/nostruct-align/1uzbA.t04-thin90.a2m.gz # 1uzbA.t04-thin90.a2m with 1926 sequences, total weight= 1926 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29395 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uzbA/info/1uzbA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uzbA/nostruct-align/1uzbA.t04-thin90.a2m.gz, have 78749 columns in 332 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1isuA/nostruct-align/1isuA.t04-thin90.a2m.gz # 1isuA.t04-thin90.a2m with 25 sequences, total weight= 10.8977 avg weight= 0.435908 27 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1isuA/info/1isuA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1isuA/nostruct-align/1isuA.t04-thin90.a2m.gz, have 78811 columns in 333 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yc9A/nostruct-align/1yc9A.t04-thin90.a2m.gz # 1yc9A.t04-thin90.a2m with 923 sequences, total weight= 923 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.967882 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yc9A/info/1yc9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1yc9A/nostruct-align/1yc9A.t04-thin90.a2m.gz, have 79222 columns in 334 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cl8A/nostruct-align/1cl8A.t04-thin90.a2m.gz # 1cl8A.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05946 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cl8A/info/1cl8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1cl8A/nostruct-align/1cl8A.t04-thin90.a2m.gz, have 79483 columns in 335 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qtwA/nostruct-align/1qtwA.t04-thin90.a2m.gz # 1qtwA.t04-thin90.a2m with 634 sequences, total weight= 634 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.896768 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qtwA/info/1qtwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qtwA/nostruct-align/1qtwA.t04-thin90.a2m.gz, have 79768 columns in 336 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uwcA/nostruct-align/1uwcA.t04-thin90.a2m.gz # 1uwcA.t04-thin90.a2m with 635 sequences, total weight= 635 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.770714 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uwcA/info/1uwcA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uwcA/nostruct-align/1uwcA.t04-thin90.a2m.gz, have 80029 columns in 337 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o7jA/nostruct-align/1o7jA.t04-thin90.a2m.gz # 1o7jA.t04-thin90.a2m with 163 sequences, total weight= 54.0565 avg weight= 0.331635 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30045 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o7jA/info/1o7jA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o7jA/nostruct-align/1o7jA.t04-thin90.a2m.gz, have 80354 columns in 338 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uvqA/nostruct-align/1uvqA.t04-thin90.a2m.gz # 1uvqA.t04-thin90.a2m with 690 sequences, total weight= 56.4882 avg weight= 0.081867 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30106 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uvqA/info/1uvqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uvqA/nostruct-align/1uvqA.t04-thin90.a2m.gz, have 80536 columns in 339 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lo7A/nostruct-align/1lo7A.t04-thin90.a2m.gz # 1lo7A.t04-thin90.a2m with 550 sequences, total weight= 550 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.958519 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lo7A/nostruct-align/1lo7A.t04-thin90.a2m.gz, have 80676 columns in 340 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xtyA/nostruct-align/1xtyA.t04-thin90.a2m.gz # 1xtyA.t04-thin90.a2m with 91 sequences, total weight= 16.4729 avg weight= 0.181021 37 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xtyA/info/1xtyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xtyA/nostruct-align/1xtyA.t04-thin90.a2m.gz, have 80796 columns in 341 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sg4A/nostruct-align/1sg4A.t04-thin90.a2m.gz # 1sg4A.t04-thin90.a2m with 1650 sequences, total weight= 1650 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1836 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sg4A/info/1sg4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sg4A/nostruct-align/1sg4A.t04-thin90.a2m.gz, have 81045 columns in 342 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1juvA/nostruct-align/1juvA.t04-thin90.a2m.gz # 1juvA.t04-thin90.a2m with 278 sequences, total weight= 278 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28427 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1juvA/info/1juvA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1juvA/nostruct-align/1juvA.t04-thin90.a2m.gz, have 81238 columns in 343 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d1qA/nostruct-align/1d1qA.t04-thin90.a2m.gz # 1d1qA.t04-thin90.a2m with 308 sequences, total weight= 211.843 avg weight= 0.687803 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3033 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d1qA/info/1d1qA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d1qA/nostruct-align/1d1qA.t04-thin90.a2m.gz, have 81397 columns in 344 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e0cA/nostruct-align/1e0cA.t04-thin90.a2m.gz # 1e0cA.t04-thin90.a2m with 1017 sequences, total weight= 1017 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.953446 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e0cA/info/1e0cA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e0cA/nostruct-align/1e0cA.t04-thin90.a2m.gz, have 81668 columns in 345 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qtnB/nostruct-align/1qtnB.t04-thin90.a2m.gz # 1qtnB.t04-thin90.a2m with 89 sequences, total weight= 27.1458 avg weight= 0.305009 44 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qtnB/info/1qtnB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qtnB/nostruct-align/1qtnB.t04-thin90.a2m.gz, have 81758 columns in 346 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n3lA/nostruct-align/1n3lA.t04-thin90.a2m.gz # 1n3lA.t04-thin90.a2m with 465 sequences, total weight= 465 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24112 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n3lA/info/1n3lA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n3lA/nostruct-align/1n3lA.t04-thin90.a2m.gz, have 82090 columns in 347 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1us0A/nostruct-align/1us0A.t04-thin90.a2m.gz # 1us0A.t04-thin90.a2m with 1312 sequences, total weight= 1312 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24796 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1us0A/info/1us0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1us0A/nostruct-align/1us0A.t04-thin90.a2m.gz, have 82403 columns in 348 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i0dA/nostruct-align/1i0dA.t04-thin90.a2m.gz # 1i0dA.t04-thin90.a2m with 475 sequences, total weight= 475 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.979222 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i0dA/info/1i0dA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i0dA/nostruct-align/1i0dA.t04-thin90.a2m.gz, have 82734 columns in 349 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q7eA/nostruct-align/1q7eA.t04-thin90.a2m.gz # 1q7eA.t04-thin90.a2m with 523 sequences, total weight= 176.332 avg weight= 0.337156 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30554 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q7eA/info/1q7eA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q7eA/nostruct-align/1q7eA.t04-thin90.a2m.gz, have 83144 columns in 350 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1txgA/nostruct-align/1txgA.t04-thin90.a2m.gz # 1txgA.t04-thin90.a2m with 2110 sequences, total weight= 2110 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.92864 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1txgA/info/1txgA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1txgA/nostruct-align/1txgA.t04-thin90.a2m.gz, have 83479 columns in 351 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xkiA/nostruct-align/1xkiA.t04-thin90.a2m.gz # 1xkiA.t04-thin90.a2m with 243 sequences, total weight= 243 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07436 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xkiA/info/1xkiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xkiA/nostruct-align/1xkiA.t04-thin90.a2m.gz, have 83607 columns in 352 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nwaA/nostruct-align/1nwaA.t04-thin90.a2m.gz # 1nwaA.t04-thin90.a2m with 253 sequences, total weight= 18.6301 avg weight= 0.0736368 44 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nwaA/info/1nwaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nwaA/nostruct-align/1nwaA.t04-thin90.a2m.gz, have 83775 columns in 353 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wp5A/nostruct-align/1wp5A.t04-thin90.a2m.gz # 1wp5A.t04-thin90.a2m with 331 sequences, total weight= 168.686 avg weight= 0.509625 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30408 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wp5A/info/1wp5A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wp5A/nostruct-align/1wp5A.t04-thin90.a2m.gz, have 84098 columns in 354 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r5lA/nostruct-align/1r5lA.t04-thin90.a2m.gz # 1r5lA.t04-thin90.a2m with 331 sequences, total weight= 331 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00887 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r5lA/info/1r5lA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r5lA/nostruct-align/1r5lA.t04-thin90.a2m.gz, have 84349 columns in 355 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rc9A/nostruct-align/1rc9A.t04-thin90.a2m.gz # 1rc9A.t04-thin90.a2m with 508 sequences, total weight= 508 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.17456 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rc9A/info/1rc9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rc9A/nostruct-align/1rc9A.t04-thin90.a2m.gz, have 84570 columns in 356 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54E/nostruct-align/1v54E.t04-thin90.a2m.gz # 1v54E.t04-thin90.a2m with 17 sequences, total weight= 5.272 avg weight= 0.310117 18 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54E/info/1v54E.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v54E/nostruct-align/1v54E.t04-thin90.a2m.gz, have 84675 columns in 357 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1odzA/nostruct-align/1odzA.t04-thin90.a2m.gz # 1odzA.t04-thin90.a2m with 51 sequences, total weight= 51 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00273 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1odzA/info/1odzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1odzA/nostruct-align/1odzA.t04-thin90.a2m.gz, have 85054 columns in 358 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kw3B/nostruct-align/1kw3B.t04-thin90.a2m.gz # 1kw3B.t04-thin90.a2m with 1391 sequences, total weight= 1391 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.951954 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kw3B/info/1kw3B.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kw3B/nostruct-align/1kw3B.t04-thin90.a2m.gz, have 85342 columns in 359 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ug6A/nostruct-align/1ug6A.t04-thin90.a2m.gz # 1ug6A.t04-thin90.a2m with 439 sequences, total weight= 83.2479 avg weight= 0.189631 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30179 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ug6A/info/1ug6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ug6A/nostruct-align/1ug6A.t04-thin90.a2m.gz, have 85768 columns in 360 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oi2A/nostruct-align/1oi2A.t04-thin90.a2m.gz # 1oi2A.t04-thin90.a2m with 101 sequences, total weight= 13.0586 avg weight= 0.129293 37 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oi2A/info/1oi2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oi2A/nostruct-align/1oi2A.t04-thin90.a2m.gz, have 86104 columns in 361 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p5vA/nostruct-align/1p5vA.t04-thin90.a2m.gz # 1p5vA.t04-thin90.a2m with 175 sequences, total weight= 115.372 avg weight= 0.659266 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30144 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p5vA/info/1p5vA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p5vA/nostruct-align/1p5vA.t04-thin90.a2m.gz, have 86295 columns in 362 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gudA/nostruct-align/1gudA.t04-thin90.a2m.gz # 1gudA.t04-thin90.a2m with 1382 sequences, total weight= 1382 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.949243 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gudA/info/1gudA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gudA/nostruct-align/1gudA.t04-thin90.a2m.gz, have 86583 columns in 363 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cmcA/nostruct-align/1cmcA.t04-thin90.a2m.gz # 1cmcA.t04-thin90.a2m with 9 sequences, total weight= 2.24642 avg weight= 0.249602 9 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cmcA/info/1cmcA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1cmcA/nostruct-align/1cmcA.t04-thin90.a2m.gz, have 86687 columns in 364 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k7iA/nostruct-align/1k7iA.t04-thin90.a2m.gz # 1k7iA.t04-thin90.a2m with 746 sequences, total weight= 746 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05402 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k7iA/info/1k7iA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k7iA/nostruct-align/1k7iA.t04-thin90.a2m.gz, have 87149 columns in 365 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a8o/nostruct-align/1a8o.t04-thin90.a2m.gz # 1a8o.t04-thin90.a2m with 34 sequences, total weight= 2.80519 avg weight= 0.0825056 14 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a8o/info/1a8o.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1a8o/nostruct-align/1a8o.t04-thin90.a2m.gz, have 87219 columns in 366 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o54A/nostruct-align/1o54A.t04-thin90.a2m.gz # 1o54A.t04-thin90.a2m with 2320 sequences, total weight= 2320 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.805146 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o54A/info/1o54A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o54A/nostruct-align/1o54A.t04-thin90.a2m.gz, have 87484 columns in 367 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gxmA/nostruct-align/1gxmA.t04-thin90.a2m.gz # 1gxmA.t04-thin90.a2m with 157 sequences, total weight= 157 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12267 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gxmA/info/1gxmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gxmA/nostruct-align/1gxmA.t04-thin90.a2m.gz, have 87808 columns in 368 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2f/2fdn/nostruct-align/2fdn.t04-thin90.a2m.gz # 2fdn.t04-thin90.a2m with 284 sequences, total weight= 22.1738 avg weight= 0.0780768 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3004 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2f/2fdn/info/2fdn.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2f/2fdn/nostruct-align/2fdn.t04-thin90.a2m.gz, have 87863 columns in 369 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g55A/nostruct-align/1g55A.t04-thin90.a2m.gz # 1g55A.t04-thin90.a2m with 372 sequences, total weight= 372 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07141 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g55A/info/1g55A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g55A/nostruct-align/1g55A.t04-thin90.a2m.gz, have 88176 columns in 370 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l6xA/nostruct-align/1l6xA.t04-thin90.a2m.gz # 1l6xA.t04-thin90.a2m with 1478 sequences, total weight= 126.158 avg weight= 0.0853574 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31183 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l6xA/info/1l6xA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1l6xA/nostruct-align/1l6xA.t04-thin90.a2m.gz, have 88383 columns in 371 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1smbA/nostruct-align/1smbA.t04-thin90.a2m.gz # 1smbA.t04-thin90.a2m with 465 sequences, total weight= 465 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2728 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1smbA/info/1smbA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1smbA/nostruct-align/1smbA.t04-thin90.a2m.gz, have 88532 columns in 372 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qjpA/nostruct-align/1qjpA.t04-thin90.a2m.gz # 1qjpA.t04-thin90.a2m with 207 sequences, total weight= 207 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26935 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qjpA/info/1qjpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qjpA/nostruct-align/1qjpA.t04-thin90.a2m.gz, have 88669 columns in 373 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wddA/nostruct-align/1wddA.t04-thin90.a2m.gz # 1wddA.t04-thin90.a2m with 3 sequences, total weight= 1.84991 avg weight= 0.616636 9 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wddA/info/1wddA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wddA/nostruct-align/1wddA.t04-thin90.a2m.gz, have 89134 columns in 374 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ufyA/nostruct-align/1ufyA.t04-thin90.a2m.gz # 1ufyA.t04-thin90.a2m with 31 sequences, total weight= 7.26257 avg weight= 0.234276 27 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ufyA/info/1ufyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ufyA/nostruct-align/1ufyA.t04-thin90.a2m.gz, have 89255 columns in 375 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ouwA/nostruct-align/1ouwA.t04-thin90.a2m.gz # 1ouwA.t04-thin90.a2m with 217 sequences, total weight= 70.4068 avg weight= 0.324456 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30081 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ouwA/info/1ouwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ouwA/nostruct-align/1ouwA.t04-thin90.a2m.gz, have 89404 columns in 376 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oksA/nostruct-align/1oksA.t04-thin90.a2m.gz # 1oksA.t04-thin90.a2m with 4 sequences, total weight= 2.99013 avg weight= 0.747532 9 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oksA/info/1oksA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oksA/nostruct-align/1oksA.t04-thin90.a2m.gz, have 89457 columns in 377 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mk0A/nostruct-align/1mk0A.t04-thin90.a2m.gz # 1mk0A.t04-thin90.a2m with 4 sequences, total weight= 3.95112 avg weight= 0.98778 9 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mk0A/info/1mk0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mk0A/nostruct-align/1mk0A.t04-thin90.a2m.gz, have 89554 columns in 378 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nnfA/nostruct-align/1nnfA.t04-thin90.a2m.gz # 1nnfA.t04-thin90.a2m with 1432 sequences, total weight= 1432 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.853583 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nnfA/info/1nnfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nnfA/nostruct-align/1nnfA.t04-thin90.a2m.gz, have 89862 columns in 379 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ummA/nostruct-align/1ummA.t04-thin90.a2m.gz # 1ummA.t04-thin90.a2m with 812 sequences, total weight= 812 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.989218 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ummA/info/1ummA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ummA/nostruct-align/1ummA.t04-thin90.a2m.gz, have 90011 columns in 380 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2a/2arcA/nostruct-align/2arcA.t04-thin90.a2m.gz # 2arcA.t04-thin90.a2m with 6 sequences, total weight= 3.43852 avg weight= 0.573086 13 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2a/2arcA/info/2arcA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2a/2arcA/nostruct-align/2arcA.t04-thin90.a2m.gz, have 90172 columns in 381 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v05A/nostruct-align/1v05A.t04-thin90.a2m.gz # 1v05A.t04-thin90.a2m with 571 sequences, total weight= 231.206 avg weight= 0.404914 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31028 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v05A/info/1v05A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v05A/nostruct-align/1v05A.t04-thin90.a2m.gz, have 90268 columns in 382 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u0fA/nostruct-align/1u0fA.t04-thin90.a2m.gz # 1u0fA.t04-thin90.a2m with 315 sequences, total weight= 62.6552 avg weight= 0.198905 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3003 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u0fA/info/1u0fA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1u0fA/nostruct-align/1u0fA.t04-thin90.a2m.gz, have 90824 columns in 383 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nfp/nostruct-align/1nfp.t04-thin90.a2m.gz # 1nfp.t04-thin90.a2m with 568 sequences, total weight= 568 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10353 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nfp/info/1nfp.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nfp/nostruct-align/1nfp.t04-thin90.a2m.gz, have 91052 columns in 384 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gppA/nostruct-align/1gppA.t04-thin90.a2m.gz # 1gppA.t04-thin90.a2m with 39 sequences, total weight= 32.4511 avg weight= 0.832079 30 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gppA/info/1gppA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gppA/nostruct-align/1gppA.t04-thin90.a2m.gz, have 91269 columns in 385 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i88A/nostruct-align/1i88A.t04-thin90.a2m.gz # 1i88A.t04-thin90.a2m with 2145 sequences, total weight= 2145 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10346 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i88A/info/1i88A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i88A/nostruct-align/1i88A.t04-thin90.a2m.gz, have 91658 columns in 386 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3c/3cla/nostruct-align/3cla.t04-thin90.a2m.gz # 3cla.t04-thin90.a2m with 381 sequences, total weight= 136.881 avg weight= 0.359268 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30417 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3c/3cla/info/3cla.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/3c/3cla/nostruct-align/3cla.t04-thin90.a2m.gz, have 91871 columns in 387 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iyhA/nostruct-align/1iyhA.t04-thin90.a2m.gz # 1iyhA.t04-thin90.a2m with 1799 sequences, total weight= 1799 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01219 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iyhA/info/1iyhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iyhA/nostruct-align/1iyhA.t04-thin90.a2m.gz, have 92069 columns in 388 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qgeE/nostruct-align/1qgeE.t04-thin90.a2m.gz # 1qgeE.t04-thin90.a2m with 27 sequences, total weight= 6.69226 avg weight= 0.247861 22 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qgeE/info/1qgeE.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qgeE/nostruct-align/1qgeE.t04-thin90.a2m.gz, have 92166 columns in 389 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eca/nostruct-align/1eca.t04-thin90.a2m.gz # 1eca.t04-thin90.a2m with 815 sequences, total weight= 815 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2695 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eca/info/1eca.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1eca/nostruct-align/1eca.t04-thin90.a2m.gz, have 92302 columns in 390 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p1mA/nostruct-align/1p1mA.t04-thin90.a2m.gz # 1p1mA.t04-thin90.a2m with 1369 sequences, total weight= 1369 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.884409 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p1mA/info/1p1mA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p1mA/nostruct-align/1p1mA.t04-thin90.a2m.gz, have 92706 columns in 391 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v54F/nostruct-align/1v54F.t04-thin90.a2m.gz # 1v54F.t04-thin90.a2m with 26 sequences, total weight= 11.6174 avg weight= 0.446822 24 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v54F/info/1v54F.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v54F/nostruct-align/1v54F.t04-thin90.a2m.gz, have 92804 columns in 392 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kqwA/nostruct-align/1kqwA.t04-thin90.a2m.gz # 1kqwA.t04-thin90.a2m with 200 sequences, total weight= 36.296 avg weight= 0.18148 44 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kqwA/info/1kqwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kqwA/nostruct-align/1kqwA.t04-thin90.a2m.gz, have 92938 columns in 393 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v5iB/nostruct-align/1v5iB.t04-thin90.a2m.gz # 1v5iB.t04-thin90.a2m with 22 sequences, total weight= 13.2052 avg weight= 0.600235 27 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v5iB/info/1v5iB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v5iB/nostruct-align/1v5iB.t04-thin90.a2m.gz, have 93014 columns in 394 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1erw/nostruct-align/1erw.t04-thin90.a2m.gz # 1erw.t04-thin90.a2m with 2323 sequences, total weight= 2323 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09503 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1erw/info/1erw.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1erw/nostruct-align/1erw.t04-thin90.a2m.gz, have 93119 columns in 395 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1in6A/nostruct-align/1in6A.t04-thin90.a2m.gz # 1in6A.t04-thin90.a2m with 2306 sequences, total weight= 2306 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11979 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1in6A/info/1in6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1in6A/nostruct-align/1in6A.t04-thin90.a2m.gz, have 93419 columns in 396 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1p57A/nostruct-align/1p57A.t04-thin90.a2m.gz # 1p57A.t04-thin90.a2m with 4 sequences, total weight= 2.26178 avg weight= 0.565446 10 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1p57A/info/1p57A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1p57A/nostruct-align/1p57A.t04-thin90.a2m.gz, have 93529 columns in 397 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jetA/nostruct-align/1jetA.t04-thin90.a2m.gz # 1jetA.t04-thin90.a2m with 1054 sequences, total weight= 1054 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04289 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jetA/info/1jetA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jetA/nostruct-align/1jetA.t04-thin90.a2m.gz, have 94046 columns in 398 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gbs/nostruct-align/1gbs.t04-thin90.a2m.gz # 1gbs.t04-thin90.a2m with 39 sequences, total weight= 29.7602 avg weight= 0.763083 31 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gbs/info/1gbs.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gbs/nostruct-align/1gbs.t04-thin90.a2m.gz, have 94231 columns in 399 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vlyA/nostruct-align/1vlyA.t04-thin90.a2m.gz # 1vlyA.t04-thin90.a2m with 395 sequences, total weight= 395 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19075 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vlyA/info/1vlyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vlyA/nostruct-align/1vlyA.t04-thin90.a2m.gz, have 94554 columns in 400 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vp8A/nostruct-align/1vp8A.t04-thin90.a2m.gz # 1vp8A.t04-thin90.a2m with 10 sequences, total weight= 4.04339 avg weight= 0.404339 17 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vp8A/info/1vp8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vp8A/nostruct-align/1vp8A.t04-thin90.a2m.gz, have 94744 columns in 401 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mqkH/nostruct-align/1mqkH.t04-thin90.a2m.gz # 1mqkH.t04-thin90.a2m with 1696 sequences, total weight= 7.79089 avg weight= 0.00459369 31 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mqkH/info/1mqkH.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mqkH/nostruct-align/1mqkH.t04-thin90.a2m.gz, have 94867 columns in 402 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m7gA/nostruct-align/1m7gA.t04-thin90.a2m.gz # 1m7gA.t04-thin90.a2m with 2225 sequences, total weight= 2225 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.971515 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m7gA/info/1m7gA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m7gA/nostruct-align/1m7gA.t04-thin90.a2m.gz, have 95075 columns in 403 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gkmA/nostruct-align/1gkmA.t04-thin90.a2m.gz # 1gkmA.t04-thin90.a2m with 184 sequences, total weight= 26.1423 avg weight= 0.142078 43 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gkmA/info/1gkmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gkmA/nostruct-align/1gkmA.t04-thin90.a2m.gz, have 95584 columns in 404 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oi0A/nostruct-align/1oi0A.t04-thin90.a2m.gz # 1oi0A.t04-thin90.a2m with 68 sequences, total weight= 68 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22193 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oi0A/info/1oi0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oi0A/nostruct-align/1oi0A.t04-thin90.a2m.gz, have 95692 columns in 405 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tu9A/nostruct-align/1tu9A.t04-thin90.a2m.gz # 1tu9A.t04-thin90.a2m with 410 sequences, total weight= 410 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18392 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tu9A/info/1tu9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tu9A/nostruct-align/1tu9A.t04-thin90.a2m.gz, have 95823 columns in 406 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xzoA/nostruct-align/1xzoA.t04-thin90.a2m.gz # 1xzoA.t04-thin90.a2m with 2126 sequences, total weight= 2126 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02747 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xzoA/info/1xzoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xzoA/nostruct-align/1xzoA.t04-thin90.a2m.gz, have 95995 columns in 407 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1yllA/nostruct-align/1yllA.t04-thin90.a2m.gz # 1yllA.t04-thin90.a2m with 37 sequences, total weight= 29.765 avg weight= 0.804458 38 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1yllA/info/1yllA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1yllA/nostruct-align/1yllA.t04-thin90.a2m.gz, have 96185 columns in 408 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xmzA/nostruct-align/1xmzA.t04-thin90.a2m.gz # 1xmzA.t04-thin90.a2m with 79 sequences, total weight= 16.9283 avg weight= 0.214282 35 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xmzA/info/1xmzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xmzA/nostruct-align/1xmzA.t04-thin90.a2m.gz, have 96409 columns in 409 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1aba/nostruct-align/1aba.t04-thin90.a2m.gz # 1aba.t04-thin90.a2m with 370 sequences, total weight= 177.284 avg weight= 0.479147 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30433 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1aba/info/1aba.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1aba/nostruct-align/1aba.t04-thin90.a2m.gz, have 96496 columns in 410 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i24A/nostruct-align/1i24A.t04-thin90.a2m.gz # 1i24A.t04-thin90.a2m with 2148 sequences, total weight= 2148 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01792 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i24A/info/1i24A.stride-mixed.near-backbone-11 WARNING: skipping i, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1i/1i24A/nostruct-align/1i24A.t04-thin90.a2m.gz, have 96888 columns in 411 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dk8A/nostruct-align/1dk8A.t04-thin90.a2m.gz # 1dk8A.t04-thin90.a2m with 180 sequences, total weight= 180 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15864 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dk8A/info/1dk8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dk8A/nostruct-align/1dk8A.t04-thin90.a2m.gz, have 97035 columns in 412 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gttA/nostruct-align/1gttA.t04-thin90.a2m.gz # 1gttA.t04-thin90.a2m with 528 sequences, total weight= 35.6398 avg weight= 0.0674997 29 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gttA/info/1gttA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gttA/nostruct-align/1gttA.t04-thin90.a2m.gz, have 97456 columns in 413 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eokA/nostruct-align/1eokA.t04-thin90.a2m.gz # 1eokA.t04-thin90.a2m with 143 sequences, total weight= 143 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18801 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eokA/info/1eokA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1eokA/nostruct-align/1eokA.t04-thin90.a2m.gz, have 97738 columns in 414 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m6kA/nostruct-align/1m6kA.t04-thin90.a2m.gz # 1m6kA.t04-thin90.a2m with 825 sequences, total weight= 825 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05673 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m6kA/info/1m6kA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m6kA/nostruct-align/1m6kA.t04-thin90.a2m.gz, have 97988 columns in 415 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/3l/3lzt/nostruct-align/3lzt.t04-thin90.a2m.gz # 3lzt.t04-thin90.a2m with 133 sequences, total weight= 15.0391 avg weight= 0.113076 39 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/3l/3lzt/info/3lzt.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/3l/3lzt/nostruct-align/3lzt.t04-thin90.a2m.gz, have 98117 columns in 416 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nrjA/nostruct-align/1nrjA.t04-thin90.a2m.gz # 1nrjA.t04-thin90.a2m with 2 sequences, total weight= 2 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.893292 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nrjA/info/1nrjA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nrjA/nostruct-align/1nrjA.t04-thin90.a2m.gz, have 98264 columns in 417 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bbkH/nostruct-align/2bbkH.t04-thin90.a2m.gz # 2bbkH.t04-thin90.a2m with 2010 sequences, total weight= 2010 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.86731 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bbkH/info/2bbkH.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2b/2bbkH/nostruct-align/2bbkH.t04-thin90.a2m.gz, have 98619 columns in 418 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1ls1A/nostruct-align/1ls1A.t04-thin90.a2m.gz # 1ls1A.t04-thin90.a2m with 1909 sequences, total weight= 1909 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.905865 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1ls1A/info/1ls1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1ls1A/nostruct-align/1ls1A.t04-thin90.a2m.gz, have 98908 columns in 419 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hp1A/nostruct-align/1hp1A.t04-thin90.a2m.gz # 1hp1A.t04-thin90.a2m with 1038 sequences, total weight= 1038 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.897857 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hp1A/info/1hp1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hp1A/nostruct-align/1hp1A.t04-thin90.a2m.gz, have 99424 columns in 420 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x6iA/nostruct-align/1x6iA.t04-thin90.a2m.gz # 1x6iA.t04-thin90.a2m with 97 sequences, total weight= 46.855 avg weight= 0.483041 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x6iA/info/1x6iA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1x6iA/nostruct-align/1x6iA.t04-thin90.a2m.gz, have 99513 columns in 421 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2t/2tgi/nostruct-align/2tgi.t04-thin90.a2m.gz # 2tgi.t04-thin90.a2m with 275 sequences, total weight= 54.7044 avg weight= 0.198925 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30075 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2t/2tgi/info/2tgi.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2t/2tgi/nostruct-align/2tgi.t04-thin90.a2m.gz, have 99625 columns in 422 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gqiA/nostruct-align/1gqiA.t04-thin90.a2m.gz # 1gqiA.t04-thin90.a2m with 23 sequences, total weight= 7.00063 avg weight= 0.304375 23 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gqiA/info/1gqiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gqiA/nostruct-align/1gqiA.t04-thin90.a2m.gz, have 100333 columns in 423 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gmiA/nostruct-align/1gmiA.t04-thin90.a2m.gz # 1gmiA.t04-thin90.a2m with 938 sequences, total weight= 938 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01112 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gmiA/info/1gmiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gmiA/nostruct-align/1gmiA.t04-thin90.a2m.gz, have 100468 columns in 424 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1h12A/nostruct-align/1h12A.t04-thin90.a2m.gz # 1h12A.t04-thin90.a2m with 55 sequences, total weight= 55 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.12838 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1h12A/info/1h12A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1h12A/nostruct-align/1h12A.t04-thin90.a2m.gz, have 100872 columns in 425 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w8kA/nostruct-align/1w8kA.t04-thin90.a2m.gz # 1w8kA.t04-thin90.a2m with 38 sequences, total weight= 12.9647 avg weight= 0.341175 23 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w8kA/info/1w8kA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w8kA/nostruct-align/1w8kA.t04-thin90.a2m.gz, have 101234 columns in 426 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jl0A/nostruct-align/1jl0A.t04-thin90.a2m.gz # 1jl0A.t04-thin90.a2m with 57 sequences, total weight= 15.7217 avg weight= 0.27582 32 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jl0A/info/1jl0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jl0A/nostruct-align/1jl0A.t04-thin90.a2m.gz, have 101544 columns in 427 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a92A/nostruct-align/1a92A.t04-thin90.a2m.gz # 1a92A.t04-thin90.a2m with 25 sequences, total weight= 3.22508 avg weight= 0.129003 16 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a92A/info/1a92A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1a92A/nostruct-align/1a92A.t04-thin90.a2m.gz, have 101594 columns in 428 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kqfC/nostruct-align/1kqfC.t04-thin90.a2m.gz # 1kqfC.t04-thin90.a2m with 202 sequences, total weight= 202 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.08525 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kqfC/info/1kqfC.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kqfC/nostruct-align/1kqfC.t04-thin90.a2m.gz, have 101810 columns in 429 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t6eX/nostruct-align/1t6eX.t04-thin90.a2m.gz # 1t6eX.t04-thin90.a2m with 801 sequences, total weight= 801 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18111 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t6eX/info/1t6eX.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t6eX/nostruct-align/1t6eX.t04-thin90.a2m.gz, have 102172 columns in 430 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uuqA/nostruct-align/1uuqA.t04-thin90.a2m.gz # 1uuqA.t04-thin90.a2m with 1379 sequences, total weight= 1379 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.820665 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uuqA/info/1uuqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uuqA/nostruct-align/1uuqA.t04-thin90.a2m.gz, have 102582 columns in 431 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xkzA/nostruct-align/1xkzA.t04-thin90.a2m.gz # 1xkzA.t04-thin90.a2m with 1172 sequences, total weight= 1172 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06399 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xkzA/info/1xkzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xkzA/nostruct-align/1xkzA.t04-thin90.a2m.gz, have 102826 columns in 432 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dbxA/nostruct-align/1dbxA.t04-thin90.a2m.gz # 1dbxA.t04-thin90.a2m with 276 sequences, total weight= 276 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22379 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dbxA/info/1dbxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dbxA/nostruct-align/1dbxA.t04-thin90.a2m.gz, have 102978 columns in 433 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hq1A/nostruct-align/1hq1A.t04-thin90.a2m.gz # 1hq1A.t04-thin90.a2m with 172 sequences, total weight= 12.9391 avg weight= 0.0752271 39 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hq1A/info/1hq1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hq1A/nostruct-align/1hq1A.t04-thin90.a2m.gz, have 103054 columns in 434 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j31A/nostruct-align/1j31A.t04-thin90.a2m.gz # 1j31A.t04-thin90.a2m with 687 sequences, total weight= 687 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09146 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j31A/info/1j31A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j31A/nostruct-align/1j31A.t04-thin90.a2m.gz, have 103316 columns in 435 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r6dA/nostruct-align/1r6dA.t04-thin90.a2m.gz # 1r6dA.t04-thin90.a2m with 2236 sequences, total weight= 2236 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07634 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r6dA/info/1r6dA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r6dA/nostruct-align/1r6dA.t04-thin90.a2m.gz, have 103638 columns in 436 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r29A/nostruct-align/1r29A.t04-thin90.a2m.gz # 1r29A.t04-thin90.a2m with 872 sequences, total weight= 872 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05146 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r29A/info/1r29A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r29A/nostruct-align/1r29A.t04-thin90.a2m.gz, have 103760 columns in 437 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xg4A/nostruct-align/1xg4A.t04-thin90.a2m.gz # 1xg4A.t04-thin90.a2m with 456 sequences, total weight= 456 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.28781 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xg4A/info/1xg4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xg4A/nostruct-align/1xg4A.t04-thin90.a2m.gz, have 104047 columns in 438 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x9iA/nostruct-align/1x9iA.t04-thin90.a2m.gz # 1x9iA.t04-thin90.a2m with 1120 sequences, total weight= 1120 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09411 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x9iA/info/1x9iA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1x9iA/nostruct-align/1x9iA.t04-thin90.a2m.gz, have 104347 columns in 439 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xy7A/nostruct-align/1xy7A.t04-thin90.a2m.gz # 1xy7A.t04-thin90.a2m with 1443 sequences, total weight= 1443 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.924488 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xy7A/info/1xy7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xy7A/nostruct-align/1xy7A.t04-thin90.a2m.gz, have 104467 columns in 440 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gs9A/nostruct-align/1gs9A.t04-thin90.a2m.gz # 1gs9A.t04-thin90.a2m with 43 sequences, total weight= 22.6911 avg weight= 0.5277 33 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gs9A/info/1gs9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gs9A/nostruct-align/1gs9A.t04-thin90.a2m.gz, have 104611 columns in 441 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s5uA/nostruct-align/1s5uA.t04-thin90.a2m.gz # 1s5uA.t04-thin90.a2m with 630 sequences, total weight= 630 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.947326 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s5uA/info/1s5uA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1s5uA/nostruct-align/1s5uA.t04-thin90.a2m.gz, have 104740 columns in 442 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s3cA/nostruct-align/1s3cA.t04-thin90.a2m.gz # 1s3cA.t04-thin90.a2m with 308 sequences, total weight= 257.464 avg weight= 0.835923 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30148 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s3cA/info/1s3cA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1s3cA/nostruct-align/1s3cA.t04-thin90.a2m.gz, have 104878 columns in 443 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pjxA/nostruct-align/1pjxA.t04-thin90.a2m.gz # 1pjxA.t04-thin90.a2m with 2434 sequences, total weight= 2434 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.795667 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pjxA/info/1pjxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pjxA/nostruct-align/1pjxA.t04-thin90.a2m.gz, have 105192 columns in 444 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hyp/nostruct-align/1hyp.t04-thin90.a2m.gz # 1hyp.t04-thin90.a2m with 75 sequences, total weight= 6.03108 avg weight= 0.0804143 30 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hyp/info/1hyp.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hyp/nostruct-align/1hyp.t04-thin90.a2m.gz, have 105267 columns in 445 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jndA/nostruct-align/1jndA.t04-thin90.a2m.gz # 1jndA.t04-thin90.a2m with 673 sequences, total weight= 673 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05285 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jndA/info/1jndA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jndA/nostruct-align/1jndA.t04-thin90.a2m.gz, have 105667 columns in 446 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mj4A/nostruct-align/1mj4A.t04-thin90.a2m.gz # 1mj4A.t04-thin90.a2m with 293 sequences, total weight= 44.1862 avg weight= 0.150806 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30095 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mj4A/info/1mj4A.stride-mixed.near-backbone-11 WARNING: skipping a, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1m/1mj4A/nostruct-align/1mj4A.t04-thin90.a2m.gz, have 105746 columns in 447 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vmeA/nostruct-align/1vmeA.t04-thin90.a2m.gz # 1vmeA.t04-thin90.a2m with 2158 sequences, total weight= 2158 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.872634 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vmeA/info/1vmeA.stride-mixed.near-backbone-11 WARNING: skipping f, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1v/1vmeA/nostruct-align/1vmeA.t04-thin90.a2m.gz, have 106147 columns in 448 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vpjA/nostruct-align/1vpjA.t04-thin90.a2m.gz # 1vpjA.t04-thin90.a2m with 87 sequences, total weight= 9.29576 avg weight= 0.106848 31 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vpjA/info/1vpjA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vpjA/nostruct-align/1vpjA.t04-thin90.a2m.gz, have 106325 columns in 449 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2bikB/nostruct-align/2bikB.t04-thin90.a2m.gz # 2bikB.t04-thin90.a2m with 1230 sequences, total weight= 47.2787 avg weight= 0.038438 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30302 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2bikB/info/2bikB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2b/2bikB/nostruct-align/2bikB.t04-thin90.a2m.gz, have 106598 columns in 450 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mnnA/nostruct-align/1mnnA.t04-thin90.a2m.gz # 1mnnA.t04-thin90.a2m with 20 sequences, total weight= 20 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26056 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mnnA/info/1mnnA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mnnA/nostruct-align/1mnnA.t04-thin90.a2m.gz, have 106888 columns in 451 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1j5xA/nostruct-align/1j5xA.t04-thin90.a2m.gz # 1j5xA.t04-thin90.a2m with 928 sequences, total weight= 928 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0593 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1j5xA/info/1j5xA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1j5xA/nostruct-align/1j5xA.t04-thin90.a2m.gz, have 107207 columns in 452 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1bx7/nostruct-align/1bx7.t04-thin90.a2m.gz # 1bx7.t04-thin90.a2m with 4 sequences, total weight= 2.31227 avg weight= 0.578067 12 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1bx7/info/1bx7.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1bx7/nostruct-align/1bx7.t04-thin90.a2m.gz, have 107258 columns in 453 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1mdoA/nostruct-align/1mdoA.t04-thin90.a2m.gz # 1mdoA.t04-thin90.a2m with 2150 sequences, total weight= 2150 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03063 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1mdoA/info/1mdoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1mdoA/nostruct-align/1mdoA.t04-thin90.a2m.gz, have 107623 columns in 454 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r9lA/nostruct-align/1r9lA.t04-thin90.a2m.gz # 1r9lA.t04-thin90.a2m with 690 sequences, total weight= 690 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.968083 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r9lA/info/1r9lA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r9lA/nostruct-align/1r9lA.t04-thin90.a2m.gz, have 107932 columns in 455 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pp0A/nostruct-align/1pp0A.t04-thin90.a2m.gz # 1pp0A.t04-thin90.a2m with 11 sequences, total weight= 6.73682 avg weight= 0.612438 18 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pp0A/info/1pp0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pp0A/nostruct-align/1pp0A.t04-thin90.a2m.gz, have 108123 columns in 456 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r8sA/nostruct-align/1r8sA.t04-thin90.a2m.gz # 1r8sA.t04-thin90.a2m with 1276 sequences, total weight= 224.977 avg weight= 0.176314 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.32514 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r8sA/info/1r8sA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r8sA/nostruct-align/1r8sA.t04-thin90.a2m.gz, have 108283 columns in 457 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xvqA/nostruct-align/1xvqA.t04-thin90.a2m.gz # 1xvqA.t04-thin90.a2m with 1933 sequences, total weight= 1933 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.992011 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xvqA/info/1xvqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xvqA/nostruct-align/1xvqA.t04-thin90.a2m.gz, have 108443 columns in 458 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kgsA/nostruct-align/1kgsA.t04-thin90.a2m.gz # 1kgsA.t04-thin90.a2m with 2329 sequences, total weight= 2329 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29862 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kgsA/info/1kgsA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kgsA/nostruct-align/1kgsA.t04-thin90.a2m.gz, have 108662 columns in 459 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xyiA/nostruct-align/1xyiA.t04-thin90.a2m.gz # 1xyiA.t04-thin90.a2m with 7 sequences, total weight= 2.33603 avg weight= 0.333718 9 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xyiA/info/1xyiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xyiA/nostruct-align/1xyiA.t04-thin90.a2m.gz, have 108728 columns in 460 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ox0A/nostruct-align/1ox0A.t04-thin90.a2m.gz # 1ox0A.t04-thin90.a2m with 2013 sequences, total weight= 2013 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.26824 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ox0A/info/1ox0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ox0A/nostruct-align/1ox0A.t04-thin90.a2m.gz, have 109142 columns in 461 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o7nB/nostruct-align/1o7nB.t04-thin90.a2m.gz # 1o7nB.t04-thin90.a2m with 152 sequences, total weight= 152 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.20611 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o7nB/info/1o7nB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o7nB/nostruct-align/1o7nB.t04-thin90.a2m.gz, have 109335 columns in 462 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2t/2tpsA/nostruct-align/2tpsA.t04-thin90.a2m.gz # 2tpsA.t04-thin90.a2m with 2077 sequences, total weight= 2077 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.866402 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2t/2tpsA/info/2tpsA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2t/2tpsA/nostruct-align/2tpsA.t04-thin90.a2m.gz, have 109561 columns in 463 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oqjA/nostruct-align/1oqjA.t04-thin90.a2m.gz # 1oqjA.t04-thin90.a2m with 28 sequences, total weight= 11.3695 avg weight= 0.406055 28 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oqjA/info/1oqjA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oqjA/nostruct-align/1oqjA.t04-thin90.a2m.gz, have 109651 columns in 464 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1rwrA/nostruct-align/1rwrA.t04-thin90.a2m.gz # 1rwrA.t04-thin90.a2m with 74 sequences, total weight= 21.8862 avg weight= 0.29576 42 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1rwrA/info/1rwrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1rwrA/nostruct-align/1rwrA.t04-thin90.a2m.gz, have 109948 columns in 465 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dbwA/nostruct-align/1dbwA.t04-thin90.a2m.gz # 1dbwA.t04-thin90.a2m with 2371 sequences, total weight= 126.688 avg weight= 0.0534323 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.33098 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dbwA/info/1dbwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dbwA/nostruct-align/1dbwA.t04-thin90.a2m.gz, have 110071 columns in 466 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jkxA/nostruct-align/1jkxA.t04-thin90.a2m.gz # 1jkxA.t04-thin90.a2m with 505 sequences, total weight= 505 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.288 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jkxA/info/1jkxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jkxA/nostruct-align/1jkxA.t04-thin90.a2m.gz, have 110280 columns in 467 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1b/1b5pA/nostruct-align/1b5pA.t04-thin90.a2m.gz # 1b5pA.t04-thin90.a2m with 2114 sequences, total weight= 2114 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0026 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1b/1b5pA/info/1b5pA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1b/1b5pA/nostruct-align/1b5pA.t04-thin90.a2m.gz, have 110662 columns in 468 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qkrA/nostruct-align/1qkrA.t04-thin90.a2m.gz # 1qkrA.t04-thin90.a2m with 24 sequences, total weight= 13.6275 avg weight= 0.567814 22 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qkrA/info/1qkrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qkrA/nostruct-align/1qkrA.t04-thin90.a2m.gz, have 110843 columns in 469 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m45A/nostruct-align/1m45A.t04-thin90.a2m.gz # 1m45A.t04-thin90.a2m with 1294 sequences, total weight= 1294 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04466 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m45A/info/1m45A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m45A/nostruct-align/1m45A.t04-thin90.a2m.gz, have 110985 columns in 470 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ui0A/nostruct-align/1ui0A.t04-thin90.a2m.gz # 1ui0A.t04-thin90.a2m with 182 sequences, total weight= 170.595 avg weight= 0.937335 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30035 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ui0A/info/1ui0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ui0A/nostruct-align/1ui0A.t04-thin90.a2m.gz, have 111177 columns in 471 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oxxK/nostruct-align/1oxxK.t04-thin90.a2m.gz # 1oxxK.t04-thin90.a2m with 2452 sequences, total weight= 89.1491 avg weight= 0.0363577 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31877 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oxxK/info/1oxxK.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oxxK/nostruct-align/1oxxK.t04-thin90.a2m.gz, have 111529 columns in 472 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1a6m/nostruct-align/1a6m.t04-thin90.a2m.gz # 1a6m.t04-thin90.a2m with 778 sequences, total weight= 778 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27311 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1a6m/info/1a6m.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1a6m/nostruct-align/1a6m.t04-thin90.a2m.gz, have 111680 columns in 473 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cnv/nostruct-align/1cnv.t04-thin90.a2m.gz # 1cnv.t04-thin90.a2m with 675 sequences, total weight= 675 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04248 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cnv/info/1cnv.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1c/1cnv/nostruct-align/1cnv.t04-thin90.a2m.gz, have 111963 columns in 474 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lycA/nostruct-align/1lycA.t04-thin90.a2m.gz # 1lycA.t04-thin90.a2m with 614 sequences, total weight= 114.205 avg weight= 0.186002 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30255 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lycA/info/1lycA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lycA/nostruct-align/1lycA.t04-thin90.a2m.gz, have 112299 columns in 475 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ewfA/nostruct-align/1ewfA.t04-thin90.a2m.gz # 1ewfA.t04-thin90.a2m with 89 sequences, total weight= 89 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.11658 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ewfA/info/1ewfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1ewfA/nostruct-align/1ewfA.t04-thin90.a2m.gz, have 112755 columns in 476 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dypA/nostruct-align/1dypA.t04-thin90.a2m.gz # 1dypA.t04-thin90.a2m with 351 sequences, total weight= 351 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04314 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dypA/info/1dypA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dypA/nostruct-align/1dypA.t04-thin90.a2m.gz, have 113026 columns in 477 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r6wA/nostruct-align/1r6wA.t04-thin90.a2m.gz # 1r6wA.t04-thin90.a2m with 731 sequences, total weight= 731 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18476 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r6wA/info/1r6wA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r6wA/nostruct-align/1r6wA.t04-thin90.a2m.gz, have 113347 columns in 478 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u9cA/nostruct-align/1u9cA.t04-thin90.a2m.gz # 1u9cA.t04-thin90.a2m with 814 sequences, total weight= 814 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07528 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u9cA/info/1u9cA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1u9cA/nostruct-align/1u9cA.t04-thin90.a2m.gz, have 113568 columns in 479 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1y/1y0kA/nostruct-align/1y0kA.t04-thin90.a2m.gz # 1y0kA.t04-thin90.a2m with 4 sequences, total weight= 2.0833 avg weight= 0.520824 10 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1y/1y0kA/info/1y0kA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1y/1y0kA/nostruct-align/1y0kA.t04-thin90.a2m.gz, have 113748 columns in 480 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kptA/nostruct-align/1kptA.t04-thin90.a2m.gz # 1kptA.t04-thin90.a2m with 7 sequences, total weight= 3.89767 avg weight= 0.55681 14 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kptA/info/1kptA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kptA/nostruct-align/1kptA.t04-thin90.a2m.gz, have 113853 columns in 481 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nvmB/nostruct-align/1nvmB.t04-thin90.a2m.gz # 1nvmB.t04-thin90.a2m with 1202 sequences, total weight= 1202 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.27245 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nvmB/info/1nvmB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nvmB/nostruct-align/1nvmB.t04-thin90.a2m.gz, have 114165 columns in 482 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t5bA/nostruct-align/1t5bA.t04-thin90.a2m.gz # 1t5bA.t04-thin90.a2m with 842 sequences, total weight= 842 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.972111 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t5bA/info/1t5bA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t5bA/nostruct-align/1t5bA.t04-thin90.a2m.gz, have 114364 columns in 483 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tw6A/nostruct-align/1tw6A.t04-thin90.a2m.gz # 1tw6A.t04-thin90.a2m with 239 sequences, total weight= 123.329 avg weight= 0.516022 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30269 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tw6A/info/1tw6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tw6A/nostruct-align/1tw6A.t04-thin90.a2m.gz, have 114454 columns in 484 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1u55A/nostruct-align/1u55A.t04-thin90.a2m.gz # 1u55A.t04-thin90.a2m with 62 sequences, total weight= 62 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25972 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1u55A/info/1u55A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1u55A/nostruct-align/1u55A.t04-thin90.a2m.gz, have 114642 columns in 485 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gheA/nostruct-align/1gheA.t04-thin90.a2m.gz # 1gheA.t04-thin90.a2m with 2392 sequences, total weight= 2392 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.773968 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gheA/info/1gheA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gheA/nostruct-align/1gheA.t04-thin90.a2m.gz, have 114812 columns in 486 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1smxA/nostruct-align/1smxA.t04-thin90.a2m.gz # 1smxA.t04-thin90.a2m with 109 sequences, total weight= 9.42979 avg weight= 0.0865118 35 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1smxA/info/1smxA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1smxA/nostruct-align/1smxA.t04-thin90.a2m.gz, have 114899 columns in 487 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pqhA/nostruct-align/1pqhA.t04-thin90.a2m.gz # 1pqhA.t04-thin90.a2m with 63 sequences, total weight= 6.81568 avg weight= 0.108185 28 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pqhA/info/1pqhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pqhA/nostruct-align/1pqhA.t04-thin90.a2m.gz, have 115018 columns in 488 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jfuA/nostruct-align/1jfuA.t04-thin90.a2m.gz # 1jfuA.t04-thin90.a2m with 2284 sequences, total weight= 2284 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.937799 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jfuA/info/1jfuA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jfuA/nostruct-align/1jfuA.t04-thin90.a2m.gz, have 115194 columns in 489 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1w9aA/nostruct-align/1w9aA.t04-thin90.a2m.gz # 1w9aA.t04-thin90.a2m with 462 sequences, total weight= 462 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.946155 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1w9aA/info/1w9aA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1w9aA/nostruct-align/1w9aA.t04-thin90.a2m.gz, have 115336 columns in 490 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1l6rA/nostruct-align/1l6rA.t04-thin90.a2m.gz # 1l6rA.t04-thin90.a2m with 2052 sequences, total weight= 2052 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.975022 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1l6rA/info/1l6rA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1l6rA/nostruct-align/1l6rA.t04-thin90.a2m.gz, have 115561 columns in 491 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1r6xA/nostruct-align/1r6xA.t04-thin90.a2m.gz # 1r6xA.t04-thin90.a2m with 95 sequences, total weight= 19.9826 avg weight= 0.210343 36 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1r6xA/info/1r6xA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1r6xA/nostruct-align/1r6xA.t04-thin90.a2m.gz, have 115947 columns in 492 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qtnA/nostruct-align/1qtnA.t04-thin90.a2m.gz # 1qtnA.t04-thin90.a2m with 104 sequences, total weight= 36.1491 avg weight= 0.347588 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qtnA/info/1qtnA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qtnA/nostruct-align/1qtnA.t04-thin90.a2m.gz, have 116099 columns in 493 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wu9A/nostruct-align/1wu9A.t04-thin90.a2m.gz # 1wu9A.t04-thin90.a2m with 44 sequences, total weight= 8.41726 avg weight= 0.191301 27 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wu9A/info/1wu9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wu9A/nostruct-align/1wu9A.t04-thin90.a2m.gz, have 116158 columns in 494 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fs1B/nostruct-align/1fs1B.t04-thin90.a2m.gz # 1fs1B.t04-thin90.a2m with 134 sequences, total weight= 41.7162 avg weight= 0.311315 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fs1B/info/1fs1B.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fs1B/nostruct-align/1fs1B.t04-thin90.a2m.gz, have 116274 columns in 495 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jl1A/nostruct-align/1jl1A.t04-thin90.a2m.gz # 1jl1A.t04-thin90.a2m with 559 sequences, total weight= 559 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.1863 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jl1A/info/1jl1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jl1A/nostruct-align/1jl1A.t04-thin90.a2m.gz, have 116426 columns in 496 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hm9A/nostruct-align/1hm9A.t04-thin90.a2m.gz # 1hm9A.t04-thin90.a2m with 2181 sequences, total weight= 2181 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0816 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hm9A/info/1hm9A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hm9A/nostruct-align/1hm9A.t04-thin90.a2m.gz, have 116884 columns in 497 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1oboA/nostruct-align/1oboA.t04-thin90.a2m.gz # 1oboA.t04-thin90.a2m with 692 sequences, total weight= 692 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00477 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1oboA/info/1oboA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1oboA/nostruct-align/1oboA.t04-thin90.a2m.gz, have 117053 columns in 498 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qwnA/nostruct-align/1qwnA.t04-thin90.a2m.gz # 1qwnA.t04-thin90.a2m with 149 sequences, total weight= 149 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09448 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qwnA/info/1qwnA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qwnA/nostruct-align/1qwnA.t04-thin90.a2m.gz, have 118067 columns in 499 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gqnA/nostruct-align/1gqnA.t04-thin90.a2m.gz # 1gqnA.t04-thin90.a2m with 83 sequences, total weight= 83 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23418 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gqnA/info/1gqnA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gqnA/nostruct-align/1gqnA.t04-thin90.a2m.gz, have 118319 columns in 500 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iuqA/nostruct-align/1iuqA.t04-thin90.a2m.gz # 1iuqA.t04-thin90.a2m with 508 sequences, total weight= 508 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.954337 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iuqA/info/1iuqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iuqA/nostruct-align/1iuqA.t04-thin90.a2m.gz, have 118676 columns in 501 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v6pA/nostruct-align/1v6pA.t04-thin90.a2m.gz # 1v6pA.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.629824 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v6pA/info/1v6pA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v6pA/nostruct-align/1v6pA.t04-thin90.a2m.gz, have 118738 columns in 502 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1azo/nostruct-align/1azo.t04-thin90.a2m.gz # 1azo.t04-thin90.a2m with 25 sequences, total weight= 19.8433 avg weight= 0.793733 28 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1azo/info/1azo.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1azo/nostruct-align/1azo.t04-thin90.a2m.gz, have 118952 columns in 503 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1c/1cy5A/nostruct-align/1cy5A.t04-thin90.a2m.gz # 1cy5A.t04-thin90.a2m with 5 sequences, total weight= 2.89041 avg weight= 0.578082 8 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1c/1cy5A/info/1cy5A.stride-mixed.near-backbone-11 WARNING: skipping f, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1c/1cy5A/nostruct-align/1cy5A.t04-thin90.a2m.gz, have 119044 columns in 504 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v2zA/nostruct-align/1v2zA.t04-thin90.a2m.gz # 1v2zA.t04-thin90.a2m with 11 sequences, total weight= 3.60899 avg weight= 0.32809 15 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v2zA/info/1v2zA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v2zA/nostruct-align/1v2zA.t04-thin90.a2m.gz, have 119150 columns in 505 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1m/1m4lA/nostruct-align/1m4lA.t04-thin90.a2m.gz # 1m4lA.t04-thin90.a2m with 389 sequences, total weight= 389 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.04079 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1m/1m4lA/info/1m4lA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1m/1m4lA/nostruct-align/1m4lA.t04-thin90.a2m.gz, have 119457 columns in 506 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gu7A/nostruct-align/1gu7A.t04-thin90.a2m.gz # 1gu7A.t04-thin90.a2m with 1991 sequences, total weight= 1991 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.18869 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gu7A/info/1gu7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gu7A/nostruct-align/1gu7A.t04-thin90.a2m.gz, have 119821 columns in 507 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1ogoX/nostruct-align/1ogoX.t04-thin90.a2m.gz # 1ogoX.t04-thin90.a2m with 5 sequences, total weight= 3.71963 avg weight= 0.743926 12 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1ogoX/info/1ogoX.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1ogoX/nostruct-align/1ogoX.t04-thin90.a2m.gz, have 120393 columns in 508 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1r/1ryaA/nostruct-align/1ryaA.t04-thin90.a2m.gz # 1ryaA.t04-thin90.a2m with 1698 sequences, total weight= 1698 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.798469 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1r/1ryaA/info/1ryaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1r/1ryaA/nostruct-align/1ryaA.t04-thin90.a2m.gz, have 120553 columns in 509 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1q0rA/nostruct-align/1q0rA.t04-thin90.a2m.gz # 1q0rA.t04-thin90.a2m with 2367 sequences, total weight= 2367 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.762128 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1q0rA/info/1q0rA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1q0rA/nostruct-align/1q0rA.t04-thin90.a2m.gz, have 120850 columns in 510 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1f/1fr2A/nostruct-align/1fr2A.t04-thin90.a2m.gz # 1fr2A.t04-thin90.a2m with 18 sequences, total weight= 4.76567 avg weight= 0.26476 21 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1f/1fr2A/info/1fr2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1f/1fr2A/nostruct-align/1fr2A.t04-thin90.a2m.gz, have 120933 columns in 511 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e29A/nostruct-align/1e29A.t04-thin90.a2m.gz # 1e29A.t04-thin90.a2m with 259 sequences, total weight= 249.822 avg weight= 0.964564 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e29A/info/1e29A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e29A/nostruct-align/1e29A.t04-thin90.a2m.gz, have 121068 columns in 512 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gveA/nostruct-align/1gveA.t04-thin90.a2m.gz # 1gveA.t04-thin90.a2m with 1250 sequences, total weight= 1250 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.24029 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gveA/info/1gveA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gveA/nostruct-align/1gveA.t04-thin90.a2m.gz, have 121392 columns in 513 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k3iA/nostruct-align/1k3iA.t04-thin90.a2m.gz # 1k3iA.t04-thin90.a2m with 949 sequences, total weight= 949 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.924811 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k3iA/info/1k3iA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k3iA/nostruct-align/1k3iA.t04-thin90.a2m.gz, have 122043 columns in 514 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1g2nA/nostruct-align/1g2nA.t04-thin90.a2m.gz # 1g2nA.t04-thin90.a2m with 740 sequences, total weight= 740 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.804852 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1g2nA/info/1g2nA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1g2nA/nostruct-align/1g2nA.t04-thin90.a2m.gz, have 122289 columns in 515 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uuyA/nostruct-align/1uuyA.t04-thin90.a2m.gz # 1uuyA.t04-thin90.a2m with 490 sequences, total weight= 490 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25109 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uuyA/info/1uuyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uuyA/nostruct-align/1uuyA.t04-thin90.a2m.gz, have 122450 columns in 516 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jo8A/nostruct-align/1jo8A.t04-thin90.a2m.gz # 1jo8A.t04-thin90.a2m with 976 sequences, total weight= 121.817 avg weight= 0.124812 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.31744 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jo8A/info/1jo8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jo8A/nostruct-align/1jo8A.t04-thin90.a2m.gz, have 122508 columns in 517 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pz7A/nostruct-align/1pz7A.t04-thin90.a2m.gz # 1pz7A.t04-thin90.a2m with 616 sequences, total weight= 616 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.894127 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pz7A/info/1pz7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pz7A/nostruct-align/1pz7A.t04-thin90.a2m.gz, have 122696 columns in 518 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1n8kA/nostruct-align/1n8kA.t04-thin90.a2m.gz # 1n8kA.t04-thin90.a2m with 1912 sequences, total weight= 1912 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25806 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1n8kA/info/1n8kA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1n8kA/nostruct-align/1n8kA.t04-thin90.a2m.gz, have 123070 columns in 519 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jx4A/nostruct-align/1jx4A.t04-thin90.a2m.gz # 1jx4A.t04-thin90.a2m with 303 sequences, total weight= 303 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.29522 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jx4A/info/1jx4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jx4A/nostruct-align/1jx4A.t04-thin90.a2m.gz, have 123411 columns in 520 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e87A/nostruct-align/1e87A.t04-thin90.a2m.gz # 1e87A.t04-thin90.a2m with 1215 sequences, total weight= 1215 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01437 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e87A/info/1e87A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e87A/nostruct-align/1e87A.t04-thin90.a2m.gz, have 123528 columns in 521 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kjqA/nostruct-align/1kjqA.t04-thin90.a2m.gz # 1kjqA.t04-thin90.a2m with 1704 sequences, total weight= 1704 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.02832 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kjqA/info/1kjqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kjqA/nostruct-align/1kjqA.t04-thin90.a2m.gz, have 123916 columns in 522 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jsdA/nostruct-align/1jsdA.t04-thin90.a2m.gz # 1jsdA.t04-thin90.a2m with 57 sequences, total weight= 8.48373 avg weight= 0.148837 27 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jsdA/info/1jsdA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jsdA/nostruct-align/1jsdA.t04-thin90.a2m.gz, have 124233 columns in 523 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1it2A/nostruct-align/1it2A.t04-thin90.a2m.gz # 1it2A.t04-thin90.a2m with 736 sequences, total weight= 736 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.23256 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1it2A/info/1it2A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1it2A/nostruct-align/1it2A.t04-thin90.a2m.gz, have 124379 columns in 524 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qb7A/nostruct-align/1qb7A.t04-thin90.a2m.gz # 1qb7A.t04-thin90.a2m with 1474 sequences, total weight= 1474 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.977115 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qb7A/info/1qb7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qb7A/nostruct-align/1qb7A.t04-thin90.a2m.gz, have 124615 columns in 525 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vbwA/nostruct-align/1vbwA.t04-thin90.a2m.gz # 1vbwA.t04-thin90.a2m with 69 sequences, total weight= 15.2889 avg weight= 0.221579 33 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vbwA/info/1vbwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vbwA/nostruct-align/1vbwA.t04-thin90.a2m.gz, have 124683 columns in 526 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1ubkS/nostruct-align/1ubkS.t04-thin90.a2m.gz # 1ubkS.t04-thin90.a2m with 283 sequences, total weight= 83.6964 avg weight= 0.295747 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30059 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1ubkS/info/1ubkS.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1ubkS/nostruct-align/1ubkS.t04-thin90.a2m.gz, have 124950 columns in 527 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jykA/nostruct-align/1jykA.t04-thin90.a2m.gz # 1jykA.t04-thin90.a2m with 1636 sequences, total weight= 1636 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00899 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jykA/info/1jykA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jykA/nostruct-align/1jykA.t04-thin90.a2m.gz, have 125179 columns in 528 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1uv4A/nostruct-align/1uv4A.t04-thin90.a2m.gz # 1uv4A.t04-thin90.a2m with 655 sequences, total weight= 655 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.00204 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1uv4A/info/1uv4A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1uv4A/nostruct-align/1uv4A.t04-thin90.a2m.gz, have 125470 columns in 529 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1o4yA/nostruct-align/1o4yA.t04-thin90.a2m.gz # 1o4yA.t04-thin90.a2m with 370 sequences, total weight= 370 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.07222 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1o4yA/info/1o4yA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1o/1o4yA/nostruct-align/1o4yA.t04-thin90.a2m.gz, have 125740 columns in 530 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pkoA/nostruct-align/1pkoA.t04-thin90.a2m.gz # 1pkoA.t04-thin90.a2m with 1138 sequences, total weight= 24.5524 avg weight= 0.021575 45 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pkoA/info/1pkoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pkoA/nostruct-align/1pkoA.t04-thin90.a2m.gz, have 125864 columns in 531 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1u/1urrA/nostruct-align/1urrA.t04-thin90.a2m.gz # 1urrA.t04-thin90.a2m with 182 sequences, total weight= 53.4888 avg weight= 0.293895 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30106 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1u/1urrA/info/1urrA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1u/1urrA/nostruct-align/1urrA.t04-thin90.a2m.gz, have 125961 columns in 532 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1x7yB/nostruct-align/1x7yB.t04-thin90.a2m.gz # 1x7yB.t04-thin90.a2m with 1152 sequences, total weight= 1152 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.14994 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1x7yB/info/1x7yB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1x7yB/nostruct-align/1x7yB.t04-thin90.a2m.gz, have 126290 columns in 533 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kveA/nostruct-align/1kveA.t04-thin90.a2m.gz # 1kveA.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.697962 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kveA/info/1kveA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kveA/nostruct-align/1kveA.t04-thin90.a2m.gz, have 126353 columns in 534 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kp6A/nostruct-align/1kp6A.t04-thin90.a2m.gz # 1kp6A.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.617161 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kp6A/info/1kp6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kp6A/nostruct-align/1kp6A.t04-thin90.a2m.gz, have 126432 columns in 535 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e5kA/nostruct-align/1e5kA.t04-thin90.a2m.gz # 1e5kA.t04-thin90.a2m with 1677 sequences, total weight= 1677 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.995197 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e5kA/info/1e5kA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e5kA/nostruct-align/1e5kA.t04-thin90.a2m.gz, have 126620 columns in 536 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eajA/nostruct-align/1eajA.t04-thin90.a2m.gz # 1eajA.t04-thin90.a2m with 1026 sequences, total weight= 15.4064 avg weight= 0.015016 39 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eajA/info/1eajA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1eajA/nostruct-align/1eajA.t04-thin90.a2m.gz, have 126744 columns in 537 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lzlA/nostruct-align/1lzlA.t04-thin90.a2m.gz # 1lzlA.t04-thin90.a2m with 2042 sequences, total weight= 2042 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.905296 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lzlA/info/1lzlA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lzlA/nostruct-align/1lzlA.t04-thin90.a2m.gz, have 127061 columns in 538 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jo0A/nostruct-align/1jo0A.t04-thin90.a2m.gz # 1jo0A.t04-thin90.a2m with 75 sequences, total weight= 18.0667 avg weight= 0.240889 41 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jo0A/info/1jo0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jo0A/nostruct-align/1jo0A.t04-thin90.a2m.gz, have 127158 columns in 539 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sqeA/nostruct-align/1sqeA.t04-thin90.a2m.gz # 1sqeA.t04-thin90.a2m with 121 sequences, total weight= 121 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09114 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sqeA/info/1sqeA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sqeA/nostruct-align/1sqeA.t04-thin90.a2m.gz, have 127259 columns in 540 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pgs/nostruct-align/1pgs.t04-thin90.a2m.gz # 1pgs.t04-thin90.a2m with 3 sequences, total weight= 3 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.03867 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pgs/info/1pgs.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pgs/nostruct-align/1pgs.t04-thin90.a2m.gz, have 127570 columns in 541 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jb3A/nostruct-align/1jb3A.t04-thin90.a2m.gz # 1jb3A.t04-thin90.a2m with 2 sequences, total weight= 1.90803 avg weight= 0.954013 6 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jb3A/info/1jb3A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jb3A/nostruct-align/1jb3A.t04-thin90.a2m.gz, have 127697 columns in 542 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k07A/nostruct-align/1k07A.t04-thin90.a2m.gz # 1k07A.t04-thin90.a2m with 2125 sequences, total weight= 2125 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.765608 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k07A/info/1k07A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k07A/nostruct-align/1k07A.t04-thin90.a2m.gz, have 127959 columns in 543 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vhqA/nostruct-align/1vhqA.t04-thin90.a2m.gz # 1vhqA.t04-thin90.a2m with 469 sequences, total weight= 469 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.15283 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vhqA/info/1vhqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vhqA/nostruct-align/1vhqA.t04-thin90.a2m.gz, have 128176 columns in 544 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xkpB/nostruct-align/1xkpB.t04-thin90.a2m.gz # 1xkpB.t04-thin90.a2m with 9 sequences, total weight= 4.98957 avg weight= 0.554397 16 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xkpB/info/1xkpB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xkpB/nostruct-align/1xkpB.t04-thin90.a2m.gz, have 128297 columns in 545 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1n/1nkpA/nostruct-align/1nkpA.t04-thin90.a2m.gz # 1nkpA.t04-thin90.a2m with 206 sequences, total weight= 134.207 avg weight= 0.651489 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30298 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1n/1nkpA/info/1nkpA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1n/1nkpA/nostruct-align/1nkpA.t04-thin90.a2m.gz, have 128385 columns in 546 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1o/1od3A/nostruct-align/1od3A.t04-thin90.a2m.gz # 1od3A.t04-thin90.a2m with 119 sequences, total weight= 90.0074 avg weight= 0.756364 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30037 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1o/1od3A/info/1od3A.stride-mixed.near-backbone-11 WARNING: skipping e, since it is lower case. # After reading /projects/compbio/experiments/models.97/pdb/1o/1od3A/nostruct-align/1od3A.t04-thin90.a2m.gz, have 128516 columns in 547 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1x/1xjuA/nostruct-align/1xjuA.t04-thin90.a2m.gz # 1xjuA.t04-thin90.a2m with 115 sequences, total weight= 80.3401 avg weight= 0.69861 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1x/1xjuA/info/1xjuA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1x/1xjuA/nostruct-align/1xjuA.t04-thin90.a2m.gz, have 128672 columns in 548 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/2b/2biqA/nostruct-align/2biqA.t04-thin90.a2m.gz # 2biqA.t04-thin90.a2m with 64 sequences, total weight= 10.9946 avg weight= 0.17179 25 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/2b/2biqA/info/2biqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/2b/2biqA/nostruct-align/2biqA.t04-thin90.a2m.gz, have 128857 columns in 549 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1vyiA/nostruct-align/1vyiA.t04-thin90.a2m.gz # 1vyiA.t04-thin90.a2m with 12 sequences, total weight= 2.54336 avg weight= 0.211946 11 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1vyiA/info/1vyiA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1vyiA/nostruct-align/1vyiA.t04-thin90.a2m.gz, have 128968 columns in 550 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iw0A/nostruct-align/1iw0A.t04-thin90.a2m.gz # 1iw0A.t04-thin90.a2m with 94 sequences, total weight= 90.8593 avg weight= 0.966588 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iw0A/info/1iw0A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iw0A/nostruct-align/1iw0A.t04-thin90.a2m.gz, have 129175 columns in 551 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1e1hB/nostruct-align/1e1hB.t04-thin90.a2m.gz # 1e1hB.t04-thin90.a2m with 9 sequences, total weight= 5.58478 avg weight= 0.620531 19 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1e1hB/info/1e1hB.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1e1hB/nostruct-align/1e1hB.t04-thin90.a2m.gz, have 129339 columns in 552 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1iibA/nostruct-align/1iibA.t04-thin90.a2m.gz # 1iibA.t04-thin90.a2m with 75 sequences, total weight= 20.754 avg weight= 0.27672 40 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1iibA/info/1iibA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1iibA/nostruct-align/1iibA.t04-thin90.a2m.gz, have 129442 columns in 553 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dcs/nostruct-align/1dcs.t04-thin90.a2m.gz # 1dcs.t04-thin90.a2m with 553 sequences, total weight= 475.336 avg weight= 0.859559 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30258 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dcs/info/1dcs.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dcs/nostruct-align/1dcs.t04-thin90.a2m.gz, have 129721 columns in 554 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1tuaA/nostruct-align/1tuaA.t04-thin90.a2m.gz # 1tuaA.t04-thin90.a2m with 75 sequences, total weight= 25.492 avg weight= 0.339893 43 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1tuaA/info/1tuaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1tuaA/nostruct-align/1tuaA.t04-thin90.a2m.gz, have 129910 columns in 555 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eu1A/nostruct-align/1eu1A.t04-thin90.a2m.gz # 1eu1A.t04-thin90.a2m with 755 sequences, total weight= 755 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.122 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eu1A/info/1eu1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1eu1A/nostruct-align/1eu1A.t04-thin90.a2m.gz, have 130677 columns in 556 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1s1fA/nostruct-align/1s1fA.t04-thin90.a2m.gz # 1s1fA.t04-thin90.a2m with 1956 sequences, total weight= 1956 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.19463 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1s1fA/info/1s1fA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1s1fA/nostruct-align/1s1fA.t04-thin90.a2m.gz, have 131074 columns in 557 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1sfdA/nostruct-align/1sfdA.t04-thin90.a2m.gz # 1sfdA.t04-thin90.a2m with 433 sequences, total weight= 433 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.0409 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1sfdA/info/1sfdA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1sfdA/nostruct-align/1sfdA.t04-thin90.a2m.gz, have 131179 columns in 558 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kr7A/nostruct-align/1kr7A.t04-thin90.a2m.gz # 1kr7A.t04-thin90.a2m with 2 sequences, total weight= 1.97223 avg weight= 0.986113 6 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kr7A/info/1kr7A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kr7A/nostruct-align/1kr7A.t04-thin90.a2m.gz, have 131289 columns in 559 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1h/1hx6A/nostruct-align/1hx6A.t04-thin90.a2m.gz # 1hx6A.t04-thin90.a2m with 1 sequences, total weight= 1 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.583138 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1h/1hx6A/info/1hx6A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1h/1hx6A/nostruct-align/1hx6A.t04-thin90.a2m.gz, have 131659 columns in 560 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1i/1i12A/nostruct-align/1i12A.t04-thin90.a2m.gz # 1i12A.t04-thin90.a2m with 2389 sequences, total weight= 2389 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.774923 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1i/1i12A/info/1i12A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1i/1i12A/nostruct-align/1i12A.t04-thin90.a2m.gz, have 131813 columns in 561 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1s/1szhA/nostruct-align/1szhA.t04-thin90.a2m.gz # 1szhA.t04-thin90.a2m with 4 sequences, total weight= 3.41704 avg weight= 0.854261 11 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1s/1szhA/info/1szhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1s/1szhA/nostruct-align/1szhA.t04-thin90.a2m.gz, have 131960 columns in 562 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lqaA/nostruct-align/1lqaA.t04-thin90.a2m.gz # 1lqaA.t04-thin90.a2m with 1296 sequences, total weight= 1296 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.22143 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lqaA/info/1lqaA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lqaA/nostruct-align/1lqaA.t04-thin90.a2m.gz, have 132306 columns in 563 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1p/1pcfA/nostruct-align/1pcfA.t04-thin90.a2m.gz # 1pcfA.t04-thin90.a2m with 24 sequences, total weight= 9.79416 avg weight= 0.40809 27 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1p/1pcfA/info/1pcfA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1p/1pcfA/nostruct-align/1pcfA.t04-thin90.a2m.gz, have 132372 columns in 564 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d3vA/nostruct-align/1d3vA.t04-thin90.a2m.gz # 1d3vA.t04-thin90.a2m with 245 sequences, total weight= 245 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.25998 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d3vA/info/1d3vA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d3vA/nostruct-align/1d3vA.t04-thin90.a2m.gz, have 132680 columns in 565 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1eyhA/nostruct-align/1eyhA.t04-thin90.a2m.gz # 1eyhA.t04-thin90.a2m with 59 sequences, total weight= 21.5515 avg weight= 0.36528 37 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1eyhA/info/1eyhA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1eyhA/nostruct-align/1eyhA.t04-thin90.a2m.gz, have 132824 columns in 566 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1a/1aqzA/nostruct-align/1aqzA.t04-thin90.a2m.gz # 1aqzA.t04-thin90.a2m with 3 sequences, total weight= 1.85637 avg weight= 0.618791 7 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1a/1aqzA/info/1aqzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1a/1aqzA/nostruct-align/1aqzA.t04-thin90.a2m.gz, have 132966 columns in 567 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k94A/nostruct-align/1k94A.t04-thin90.a2m.gz # 1k94A.t04-thin90.a2m with 1165 sequences, total weight= 1165 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.01317 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k94A/info/1k94A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k94A/nostruct-align/1k94A.t04-thin90.a2m.gz, have 133131 columns in 568 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1k7jA/nostruct-align/1k7jA.t04-thin90.a2m.gz # 1k7jA.t04-thin90.a2m with 306 sequences, total weight= 135.099 avg weight= 0.4415 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30472 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1k7jA/info/1k7jA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1k7jA/nostruct-align/1k7jA.t04-thin90.a2m.gz, have 133337 columns in 569 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gqzA/nostruct-align/1gqzA.t04-thin90.a2m.gz # 1gqzA.t04-thin90.a2m with 327 sequences, total weight= 327 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.16274 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gqzA/info/1gqzA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gqzA/nostruct-align/1gqzA.t04-thin90.a2m.gz, have 133611 columns in 570 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jakA/nostruct-align/1jakA.t04-thin90.a2m.gz # 1jakA.t04-thin90.a2m with 188 sequences, total weight= 188 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05266 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jakA/info/1jakA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jakA/nostruct-align/1jakA.t04-thin90.a2m.gz, have 134110 columns in 571 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gxuA/nostruct-align/1gxuA.t04-thin90.a2m.gz # 1gxuA.t04-thin90.a2m with 175 sequences, total weight= 42.3456 avg weight= 0.241975 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.30061 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gxuA/info/1gxuA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gxuA/nostruct-align/1gxuA.t04-thin90.a2m.gz, have 134198 columns in 572 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v7zA/nostruct-align/1v7zA.t04-thin90.a2m.gz # 1v7zA.t04-thin90.a2m with 78 sequences, total weight= 78 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.2895 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v7zA/info/1v7zA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v7zA/nostruct-align/1v7zA.t04-thin90.a2m.gz, have 134455 columns in 573 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1j/1jixA/nostruct-align/1jixA.t04-thin90.a2m.gz # 1jixA.t04-thin90.a2m with 43 sequences, total weight= 43 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.966296 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1j/1jixA/info/1jixA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1j/1jixA/nostruct-align/1jixA.t04-thin90.a2m.gz, have 134806 columns in 574 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1v/1v37A/nostruct-align/1v37A.t04-thin90.a2m.gz # 1v37A.t04-thin90.a2m with 1048 sequences, total weight= 1048 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10833 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1v/1v37A/info/1v37A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1v/1v37A/nostruct-align/1v37A.t04-thin90.a2m.gz, have 134977 columns in 575 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lbu/nostruct-align/1lbu.t04-thin90.a2m.gz # 1lbu.t04-thin90.a2m with 222 sequences, total weight= 222 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.06939 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lbu/info/1lbu.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lbu/nostruct-align/1lbu.t04-thin90.a2m.gz, have 135190 columns in 576 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1q/1qd1A/nostruct-align/1qd1A.t04-thin90.a2m.gz # 1qd1A.t04-thin90.a2m with 24 sequences, total weight= 8.12839 avg weight= 0.338683 22 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1q/1qd1A/info/1qd1A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1q/1qd1A/nostruct-align/1qd1A.t04-thin90.a2m.gz, have 135509 columns in 577 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ezwA/nostruct-align/1ezwA.t04-thin90.a2m.gz # 1ezwA.t04-thin90.a2m with 638 sequences, total weight= 638 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.10078 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ezwA/info/1ezwA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1ezwA/nostruct-align/1ezwA.t04-thin90.a2m.gz, have 135856 columns in 578 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1t6uA/nostruct-align/1t6uA.t04-thin90.a2m.gz # 1t6uA.t04-thin90.a2m with 8 sequences, total weight= 3.00502 avg weight= 0.375627 12 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1t6uA/info/1t6uA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1t6uA/nostruct-align/1t6uA.t04-thin90.a2m.gz, have 135973 columns in 579 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1e/1ekqA/nostruct-align/1ekqA.t04-thin90.a2m.gz # 1ekqA.t04-thin90.a2m with 1093 sequences, total weight= 1093 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.93587 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1e/1ekqA/info/1ekqA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1e/1ekqA/nostruct-align/1ekqA.t04-thin90.a2m.gz, have 136227 columns in 580 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1k/1kxoA/nostruct-align/1kxoA.t04-thin90.a2m.gz # 1kxoA.t04-thin90.a2m with 292 sequences, total weight= 292 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.914825 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1k/1kxoA/info/1kxoA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1k/1kxoA/nostruct-align/1kxoA.t04-thin90.a2m.gz, have 136392 columns in 581 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lriA/nostruct-align/1lriA.t04-thin90.a2m.gz # 1lriA.t04-thin90.a2m with 27 sequences, total weight= 5.40185 avg weight= 0.200068 21 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lriA/info/1lriA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lriA/nostruct-align/1lriA.t04-thin90.a2m.gz, have 136490 columns in 582 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1l/1lvmA/nostruct-align/1lvmA.t04-thin90.a2m.gz # 1lvmA.t04-thin90.a2m with 628 sequences, total weight= 628 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.05745 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1l/1lvmA/info/1lvmA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1l/1lvmA/nostruct-align/1lvmA.t04-thin90.a2m.gz, have 136719 columns in 583 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1t/1ta8A/nostruct-align/1ta8A.t04-thin90.a2m.gz # 1ta8A.t04-thin90.a2m with 219 sequences, total weight= 22.2247 avg weight= 0.101483 46 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1t/1ta8A/info/1ta8A.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1t/1ta8A/nostruct-align/1ta8A.t04-thin90.a2m.gz, have 137032 columns in 584 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1g/1gwyA/nostruct-align/1gwyA.t04-thin90.a2m.gz # 1gwyA.t04-thin90.a2m with 8 sequences, total weight= 2.81125 avg weight= 0.351406 12 iterations # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1g/1gwyA/info/1gwyA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1g/1gwyA/nostruct-align/1gwyA.t04-thin90.a2m.gz, have 137207 columns in 585 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1dzkA/nostruct-align/1dzkA.t04-thin90.a2m.gz # 1dzkA.t04-thin90.a2m with 166 sequences, total weight= 166 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09045 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1dzkA/info/1dzkA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1dzkA/nostruct-align/1dzkA.t04-thin90.a2m.gz, have 137355 columns in 586 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1w/1wkcA/nostruct-align/1wkcA.t04-thin90.a2m.gz # 1wkcA.t04-thin90.a2m with 228 sequences, total weight= 221.642 avg weight= 0.972113 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.3003 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1w/1wkcA/info/1wkcA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1w/1wkcA/nostruct-align/1wkcA.t04-thin90.a2m.gz, have 137523 columns in 587 chains # Reading Input A2M format from /projects/compbio/experiments/models.97/pdb/1d/1d5tA/nostruct-align/1d5tA.t04-thin90.a2m.gz # 1d5tA.t04-thin90.a2m with 2123 sequences, total weight= 2123 avg weight= 1 clipped 46 iterations # AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.844685 bits. # Reading sequence for layer 4 from /projects/compbio/experiments/models.97/pdb/1d/1d5tA/info/1d5tA.stride-mixed.near-backbone-11 # After reading /projects/compbio/experiments/models.97/pdb/1d/1d5tA/nostruct-align/1d5tA.t04-thin90.a2m.gz, have 137956 columns in 588 chains # command:CPU_time= 1187.93 sec, elapsed time= 1288.49 sec) # command:# ReportNetQualityForCrossTrainTo quality-reports/dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-near-backbone-11-from-empty.train ok. # command:# Training Net with 5 estimation cycles. Epoch: 1 3.46075 cross_bits=3.44275 objective=0.121949 new best, reshuffling Epoch: 2 3.44196 cross_bits=3.44181 objective=0.122885 new best Epoch: 3 3.44158 cross_bits=3.4416 objective=0.123106 new best Epoch: 4 3.44134 cross_bits=3.44138 objective=0.12335 new best, reshuffling Epoch: 5 3.4411 cross_bits=3.44099 objective=0.123705 new best # Network initialization done # command:# ReportNeuralNet networks/dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-near-backbone-11-from-empty.net ok. # Network initialization done # Neural network printed. # command:CPU_time= 1487.1 sec, elapsed time= 1588.18 sec) # command:# Network initialization done # command:Equilibrating dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-near-backbone-11-from-empty.net # command:# Training Net with 5 estimation cycles. Epoch: 6 3.44066 cross_bits=3.44073 objective=0.123976 new best Epoch: 7 3.44043 cross_bits=3.44047 objective=0.124241 new best Epoch: 8 3.44013 cross_bits=3.44016 objective=0.12457 new best Epoch: 9 3.43978 cross_bits=3.4398 objective=0.12492 new best Epoch: 10 3.43939 cross_bits=3.43939 objective=0.125337 new best # Network initialization done # command:# ReportNeuralNet networks/dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-near-backbone-11-from-empty.net ok. # Network initialization done # Neural network printed. # command:CPU_time= 1807.33 sec, elapsed time= 1908.81 sec) # command:# Network initialization done # command:Equilibrating dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-near-backbone-11-from-empty.net # command:# Training Net with 5 estimation cycles. Epoch: 11 3.43918 cross_bits=3.43916 objective=0.12556 new best Epoch: 12 3.43869 cross_bits=3.43867 objective=0.126055 new best Epoch: 13 3.43813 cross_bits=3.43808 objective=0.126657 new best Epoch: 14 3.43746 cross_bits=3.43735 objective=0.127386 new best Epoch: 15 3.43664 cross_bits=3.43645 objective=0.128324 new best # Network initialization done # command:# ReportNeuralNet networks/dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-near-backbone-11-from-empty.net ok. # Network initialization done # Neural network printed. # command:CPU_time= 2127.52 sec, elapsed time= 2229.19 sec) # command:# Network initialization done # command:Equilibrating dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-near-backbone-11-from-empty.net # command:# Training Net with 5 estimation cycles. Epoch: 16 3.43605 cross_bits=3.43579 objective=0.128952 new best Epoch: 17 3.43484 cross_bits=3.43445 objective=0.130313 new best Epoch: 18 3.43325 cross_bits=3.43263 objective=0.132298 new best Epoch: 19 3.43107 cross_bits=3.43011 objective=0.135638 new best, reshuffling Epoch: 20 3.42791 cross_bits=3.42653 objective=0.145579 new best # Network initialization done # command:# ReportNeuralNet networks/dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-near-backbone-11-from-empty.net ok. # Network initialization done # Neural network printed. # command:CPU_time= 2447.85 sec, elapsed time= 2549.74 sec) # command:# Network initialization done # command:Equilibrating dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-near-backbone-11-from-empty.net # command:# Training Net with 50 estimation cycles. Epoch: 21 3.4237 cross_bits=3.42113 objective=0.155302 new best Epoch: 22 3.4163 cross_bits=3.41218 objective=0.173043 new best Epoch: 23 3.40512 cross_bits=3.39922 objective=0.203258 new best Epoch: 24 3.39001 cross_bits=3.38306 objective=0.235104 new best Epoch: 25 3.37257 cross_bits=3.36581 objective=0.261067 new best Epoch: 26 3.35497 cross_bits=3.34925 objective=0.283226 new best Epoch: 27 3.33866 cross_bits=3.33421 objective=0.303358 new best Epoch: 28 3.32394 cross_bits=3.32046 objective=0.323477 new best Epoch: 29 3.31026 cross_bits=3.3072 objective=0.342289 new best Epoch: 30 3.29668 cross_bits=3.29348 objective=0.36261 new best Epoch: 31 3.28232 cross_bits=3.27854 objective=0.383706 new best, reshuffling Epoch: 32 3.26646 cross_bits=3.26181 objective=0.407748 new best Epoch: 33 3.24918 cross_bits=3.24385 objective=0.434763 new best, reshuffling Epoch: 34 3.23118 cross_bits=3.22539 objective=0.460943 new best Epoch: 35 3.21296 cross_bits=3.20739 objective=0.4865 new best Epoch: 36 3.19555 cross_bits=3.19056 objective=0.510391 new best Epoch: 37 3.17944 cross_bits=3.17524 objective=0.534611 new best Epoch: 38 3.16474 cross_bits=3.16141 objective=0.554531 new best Epoch: 39 3.15138 cross_bits=3.149 objective=0.57268 new best, reshuffling Epoch: 40 3.13884 cross_bits=3.13927 objective=0.587248 new best Epoch: 41 3.1281 cross_bits=3.12978 objective=0.599357 new best Epoch: 42 3.11866 cross_bits=3.12168 objective=0.610634 new best Epoch: 43 3.11058 cross_bits=3.11486 objective=0.620573 new best, reshuffling Epoch: 44 3.10418 cross_bits=3.111 objective=0.62362 new best Epoch: 45 3.09839 cross_bits=3.10617 objective=0.630102 new best Epoch: 46 3.09347 cross_bits=3.102 objective=0.635639 new best Epoch: 47 3.08921 cross_bits=3.09832 objective=0.640799 new best Epoch: 48 3.08545 cross_bits=3.09505 objective=0.645368 new best Epoch: 49 3.08209 cross_bits=3.09209 objective=0.648757 new best Epoch: 50 3.07905 cross_bits=3.08938 objective=0.652225 new best Epoch: 51 3.07627 cross_bits=3.08689 objective=0.655447 new best Epoch: 52 3.07371 cross_bits=3.08458 objective=0.658542 new best Epoch: 53 3.07133 cross_bits=3.08241 objective=0.661515 new best Epoch: 54 3.0691 cross_bits=3.08038 objective=0.664531 new best Epoch: 55 3.06699 cross_bits=3.07845 objective=0.666637 new best Epoch: 56 3.065 cross_bits=3.07661 objective=0.669245 new best Epoch: 57 3.0631 cross_bits=3.07485 objective=0.671349 new best, reshuffling Epoch: 58 3.06117 cross_bits=3.06848 objective=0.681599 new best Epoch: 59 3.05926 cross_bits=3.06683 objective=0.683838 new best Epoch: 60 3.05754 cross_bits=3.06521 objective=0.686149 new best Epoch: 61 3.05587 cross_bits=3.06362 objective=0.688087 new best Epoch: 62 3.05424 cross_bits=3.06206 objective=0.689906 new best, reshuffling Epoch: 63 3.05286 cross_bits=3.06034 objective=0.691208 new best, reshuffling Epoch: 64 3.05165 cross_bits=3.0579 objective=0.694201 new best Epoch: 65 3.05016 cross_bits=3.05638 objective=0.696518 new best Epoch: 66 3.04864 cross_bits=3.05489 objective=0.698174 new best, reshuffling Epoch: 67 3.04681 cross_bits=3.05382 objective=0.699346 new best Epoch: 68 3.04538 cross_bits=3.05242 objective=0.701374 new best Epoch: 69 3.04396 cross_bits=3.05107 objective=0.703152 new best Epoch: 70 3.04258 cross_bits=3.04977 objective=0.704709 new best # Network initialization done # command:# ReportNeuralNet networks/dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-near-backbone-11-from-empty.net ok. # Network initialization done # Neural network printed. # command:CPU_time= 5292.65 sec, elapsed time= 5395.99 sec) # command:# Network initialization done # command:# Training Net with 50 estimation cycles. Epoch: 71 3.04021 cross_bits=3.04881 objective=0.706351 new best Epoch: 72 3.03891 cross_bits=3.04764 objective=0.708087 new best Epoch: 73 3.03766 cross_bits=3.04649 objective=0.709602 new best Epoch: 74 3.03645 cross_bits=3.04538 objective=0.71116 new best Epoch: 75 3.03529 cross_bits=3.04431 objective=0.71269 new best Epoch: 76 3.03417 cross_bits=3.04328 objective=0.713977 new best Epoch: 77 3.03309 cross_bits=3.04229 objective=0.715148 new best Epoch: 78 3.03204 cross_bits=3.04132 objective=0.716422 new best Epoch: 79 3.03103 cross_bits=3.04039 objective=0.717255 new best, reshuffling Epoch: 80 3.03023 cross_bits=3.03784 objective=0.721764 new best Epoch: 81 3.02934 cross_bits=3.03694 objective=0.723044 new best Epoch: 82 3.0284 cross_bits=3.03608 objective=0.724021 new best Epoch: 83 3.02748 cross_bits=3.03524 objective=0.724613 new best Epoch: 84 3.02657 cross_bits=3.03442 objective=0.72574 new best Epoch: 85 3.02569 cross_bits=3.03362 objective=0.726972 new best Epoch: 86 3.02482 cross_bits=3.03284 objective=0.728056 new best Epoch: 87 3.02397 cross_bits=3.03208 objective=0.728996 new best Epoch: 88 3.02313 cross_bits=3.03133 objective=0.730199 new best Epoch: 89 3.02231 cross_bits=3.0306 objective=0.730888 new best Epoch: 90 3.0215 cross_bits=3.02988 objective=0.731682 new best Epoch: 91 3.0207 cross_bits=3.02917 objective=0.73287 new best Epoch: 92 3.01991 cross_bits=3.02848 objective=0.73375 new best Epoch: 93 3.01913 cross_bits=3.02779 objective=0.734535 new best Epoch: 94 3.01837 cross_bits=3.02712 objective=0.735274 new best Epoch: 95 3.01761 cross_bits=3.02645 objective=0.736192 new best Epoch: 96 3.01685 cross_bits=3.02579 objective=0.737092 new best Epoch: 97 3.01611 cross_bits=3.02514 objective=0.737852 new best Epoch: 98 3.01537 cross_bits=3.0245 objective=0.738676 new best Epoch: 99 3.01463 cross_bits=3.02386 objective=0.739537 new best Epoch: 100 3.01391 cross_bits=3.02323 objective=0.740411 new best Epoch: 101 3.01319 cross_bits=3.02261 objective=0.741143 new best Epoch: 102 3.01247 cross_bits=3.02199 objective=0.741918 new best Epoch: 103 3.01176 cross_bits=3.02137 objective=0.742601 new best Epoch: 104 3.01105 cross_bits=3.02076 objective=0.743363 new best Epoch: 105 3.01035 cross_bits=3.02016 objective=0.744339 new best Epoch: 106 3.00965 cross_bits=3.01955 objective=0.745143 new best Epoch: 107 3.00895 cross_bits=3.01895 objective=0.746166 new best Epoch: 108 3.00826 cross_bits=3.01836 objective=0.747095 new best Epoch: 109 3.00757 cross_bits=3.01777 objective=0.747949 new best Epoch: 110 3.00689 cross_bits=3.01718 objective=0.748943 new best Epoch: 111 3.00621 cross_bits=3.0166 objective=0.750017 new best Epoch: 112 3.00553 cross_bits=3.01601 objective=0.750794 new best Epoch: 113 3.00486 cross_bits=3.01544 objective=0.751746 new best Epoch: 114 3.00419 cross_bits=3.01486 objective=0.752463 new best Epoch: 115 3.00352 cross_bits=3.01429 objective=0.752987 new best Epoch: 116 3.00286 cross_bits=3.01372 objective=0.753545 new best Epoch: 117 3.0022 cross_bits=3.01316 objective=0.754467 new best Epoch: 118 3.00155 cross_bits=3.0126 objective=0.755243 new best Epoch: 119 3.0009 cross_bits=3.01204 objective=0.755994 new best, reshuffling Epoch: 120 3.00011 cross_bits=3.01336 objective=0.753853 reset to old best (0.755994), reshuffling # Network initialization done # command:# ReportNeuralNet networks/dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-near-backbone-11-from-empty.net ok. # Network initialization done # Neural network printed. # command:CPU_time= 8105.34 sec, elapsed time= 8225.6 sec) # command:# ReportNetQualityForTestTo quality-reports/dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-near-backbone-11-from-empty.120.test ok. # command:# Testing net dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-near-backbone-11-from-empty.net # Network initialization done # command:# Network initialization done # command:Equilibrating dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-near-backbone-11-from-empty.net # command:# Training Net with 50 estimation cycles. Epoch: 121 3.05047 cross_bits=3.04612 objective=0.712762 new best Epoch: 122 3.02181 cross_bits=3.03037 objective=0.73113 new best, reshuffling Epoch: 123 3.01111 cross_bits=3.02175 objective=0.741651 new best Epoch: 124 3.00487 cross_bits=3.01689 objective=0.747649 new best Epoch: 125 3.00088 cross_bits=3.01355 objective=0.752321 new best Epoch: 126 2.99801 cross_bits=3.01105 objective=0.755195 new best Epoch: 127 2.99579 cross_bits=3.00907 objective=0.758065 new best Epoch: 128 2.99396 cross_bits=3.00742 objective=0.760021 new best Epoch: 129 2.9924 cross_bits=3.00601 objective=0.762443 new best Epoch: 130 2.99104 cross_bits=3.00478 objective=0.763925 new best Epoch: 131 2.98981 cross_bits=3.00367 objective=0.765169 new best Epoch: 132 2.98869 cross_bits=3.00267 objective=0.766356 new best Epoch: 133 2.98766 cross_bits=3.00175 objective=0.767613 new best, reshuffling Epoch: 134 2.98717 cross_bits=3.00035 objective=0.768121 new best Epoch: 135 2.9863 cross_bits=2.99957 objective=0.769237 new best Epoch: 136 2.98547 cross_bits=2.99883 objective=0.770046 new best Epoch: 137 2.98466 cross_bits=2.99812 objective=0.770668 new best Epoch: 138 2.9839 cross_bits=2.99745 objective=0.771648 new best Epoch: 139 2.98316 cross_bits=2.99681 objective=0.772727 new best Epoch: 140 2.98245 cross_bits=2.9962 objective=0.773485 new best Epoch: 141 2.98176 cross_bits=2.99561 objective=0.774364 new best Epoch: 142 2.9811 cross_bits=2.99504 objective=0.775259 new best Epoch: 143 2.98046 cross_bits=2.99449 objective=0.775968 new best Epoch: 144 2.97983 cross_bits=2.99396 objective=0.776548 new best Epoch: 145 2.97922 cross_bits=2.99345 objective=0.777326 new best Epoch: 146 2.97863 cross_bits=2.99295 objective=0.777726 new best Epoch: 147 2.97805 cross_bits=2.99246 objective=0.778263 new best Epoch: 148 2.97748 cross_bits=2.99198 objective=0.778919 new best Epoch: 149 2.97693 cross_bits=2.99152 objective=0.779448 new best Epoch: 150 2.97638 cross_bits=2.99107 objective=0.780097 new best Epoch: 151 2.97585 cross_bits=2.99063 objective=0.780566 new best Epoch: 152 2.97533 cross_bits=2.9902 objective=0.781227 new best Epoch: 153 2.97482 cross_bits=2.98977 objective=0.781711 new best Epoch: 154 2.97431 cross_bits=2.98936 objective=0.782391 new best Epoch: 155 2.97382 cross_bits=2.98895 objective=0.783241 new best Epoch: 156 2.97333 cross_bits=2.98855 objective=0.783749 new best Epoch: 157 2.97285 cross_bits=2.98816 objective=0.784235 new best Epoch: 158 2.97238 cross_bits=2.98778 objective=0.784422 new best, reshuffling Epoch: 159 2.97158 cross_bits=2.98785 objective=0.783638 worse network accepted, reshuffling Epoch: 160 2.97161 cross_bits=2.987 objective=0.786123 new best Epoch: 161 2.97115 cross_bits=2.98666 objective=0.786503 new best Epoch: 162 2.97071 cross_bits=2.98632 objective=0.78699 new best Epoch: 163 2.97027 cross_bits=2.98597 objective=0.787302 new best Epoch: 164 2.96984 cross_bits=2.98563 objective=0.78765 new best Epoch: 165 2.96941 cross_bits=2.9853 objective=0.788129 new best, reshuffling Epoch: 166 2.96868 cross_bits=2.98608 objective=0.787006 worse network accepted, reshuffling Epoch: 167 2.96808 cross_bits=2.98725 objective=0.784038 worse network rejected, reshuffling Epoch: 168 2.96828 cross_bits=2.98784 objective=0.783393 worse network accepted, reshuffling Epoch: 169 2.96785 cross_bits=2.98482 objective=0.788003 improvement accepted, reshuffling Epoch: 170 2.96726 cross_bits=2.98642 objective=0.785387 reset to old best (0.788129), reshuffling # Network initialization done # command:# ReportNeuralNet networks/dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-near-backbone-11-from-empty.net ok. # Network initialization done # Neural network printed. # command:CPU_time= 11005.4 sec, elapsed time= 11137.8 sec) # command:# Network initialization done # command:# Training Net with 50 estimation cycles. Epoch: 171 2.96885 cross_bits=2.9861 objective=0.786514 worse network accepted, reshuffling Epoch: 172 2.96875 cross_bits=2.98732 objective=0.784435 worse network rejected, reshuffling Epoch: 173 2.96875 cross_bits=2.98529 objective=0.787841 new best Epoch: 174 2.96839 cross_bits=2.98501 objective=0.788288 new best Epoch: 175 2.96801 cross_bits=2.98471 objective=0.78857 new best Epoch: 176 2.96762 cross_bits=2.98441 objective=0.788942 new best Epoch: 177 2.96724 cross_bits=2.98411 objective=0.789316 new best, reshuffling Epoch: 178 2.9669 cross_bits=2.98414 objective=0.788879 worse network accepted, reshuffling Epoch: 179 2.96685 cross_bits=2.98568 objective=0.788006 worse network accepted, reshuffling Epoch: 180 2.96589 cross_bits=2.98704 objective=0.784791 worse network accepted, reshuffling Epoch: 181 2.96576 cross_bits=2.98323 objective=0.789824 new best Epoch: 182 2.96522 cross_bits=2.98295 objective=0.790331 new best Epoch: 183 2.96488 cross_bits=2.98268 objective=0.790395 new best Epoch: 184 2.96453 cross_bits=2.98241 objective=0.790865 new best Epoch: 185 2.96419 cross_bits=2.98214 objective=0.791082 new best Epoch: 186 2.96385 cross_bits=2.98187 objective=0.791561 new best Epoch: 187 2.96352 cross_bits=2.98161 objective=0.792074 new best Epoch: 188 2.96319 cross_bits=2.98134 objective=0.792538 new best, reshuffling Epoch: 189 2.96312 cross_bits=2.98123 objective=0.793522 new best Epoch: 190 2.96284 cross_bits=2.98102 objective=0.793621 new best Epoch: 191 2.96254 cross_bits=2.98078 objective=0.79383 new best Epoch: 192 2.96222 cross_bits=2.98054 objective=0.794367 new best Epoch: 193 2.96192 cross_bits=2.9803 objective=0.794685 new best Epoch: 194 2.96161 cross_bits=2.98007 objective=0.79491 new best, reshuffling Epoch: 195 2.961 cross_bits=2.97931 objective=0.795499 new best Epoch: 196 2.96068 cross_bits=2.97908 objective=0.795736 new best Epoch: 197 2.96039 cross_bits=2.97886 objective=0.795997 new best Epoch: 198 2.9601 cross_bits=2.97863 objective=0.796157 new best Epoch: 199 2.95981 cross_bits=2.97841 objective=0.796482 new best Epoch: 200 2.95952 cross_bits=2.97819 objective=0.79673 new best Epoch: 201 2.95924 cross_bits=2.97798 objective=0.797072 new best Epoch: 202 2.95897 cross_bits=2.97776 objective=0.797605 new best, reshuffling Epoch: 203 2.95831 cross_bits=2.97849 objective=0.797188 worse network accepted, reshuffling Epoch: 204 2.95783 cross_bits=2.97819 objective=0.796999 worse network accepted, reshuffling Epoch: 205 2.95791 cross_bits=2.97879 objective=0.797457 improvement accepted, reshuffling Epoch: 206 2.95782 cross_bits=2.97849 objective=0.797983 new best Epoch: 207 2.95759 cross_bits=2.97829 objective=0.798283 new best Epoch: 208 2.95735 cross_bits=2.97809 objective=0.798642 new best Epoch: 209 2.9571 cross_bits=2.9779 objective=0.798963 new best Epoch: 210 2.95685 cross_bits=2.9777 objective=0.799167 new best Epoch: 211 2.95661 cross_bits=2.97751 objective=0.799505 new best Epoch: 212 2.95636 cross_bits=2.97731 objective=0.799655 new best Epoch: 213 2.95612 cross_bits=2.97712 objective=0.799761 new best Epoch: 214 2.95588 cross_bits=2.97694 objective=0.800087 new best, reshuffling Epoch: 215 2.95586 cross_bits=2.97538 objective=0.800221 new best, reshuffling Epoch: 216 2.95504 cross_bits=2.97504 objective=0.801452 new best Epoch: 217 2.95489 cross_bits=2.97484 objective=0.80167 new best Epoch: 218 2.95467 cross_bits=2.97466 objective=0.801855 new best Epoch: 219 2.95444 cross_bits=2.97449 objective=0.802031 new best Epoch: 220 2.95422 cross_bits=2.97432 objective=0.802202 new best # Network initialization done # command:# ReportNeuralNet networks/dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-near-backbone-11-from-empty.net ok. # Network initialization done # Neural network printed. # command:CPU_time= 13821 sec, elapsed time= 13954.7 sec) # command:# ReportNetQualityForTestTo quality-reports/dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-near-backbone-11-from-empty.220.test ok. # command:# Testing net dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-near-backbone-11-from-empty.net # Network initialization done # command:# Network initialization done # command:Equilibrating dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-near-backbone-11-from-empty.net # command:# Training Net with 50 estimation cycles. Epoch: 221 2.95728 cross_bits=2.9784 objective=0.796347 worse network accepted, reshuffling Epoch: 222 2.95585 cross_bits=2.97721 objective=0.798247 new best, reshuffling Epoch: 223 2.9563 cross_bits=2.9794 objective=0.797184 worse network accepted, reshuffling Epoch: 224 2.95589 cross_bits=2.9768 objective=0.799769 new best Epoch: 225 2.95569 cross_bits=2.97661 objective=0.800027 new best Epoch: 226 2.95542 cross_bits=2.9764 objective=0.800298 new best Epoch: 227 2.95516 cross_bits=2.97619 objective=0.800416 new best, reshuffling Epoch: 228 2.9551 cross_bits=2.97594 objective=0.799726 worse network rejected, reshuffling Epoch: 229 2.95551 cross_bits=2.97562 objective=0.80092 new best Epoch: 230 2.95522 cross_bits=2.97541 objective=0.800904 worse network accepted, reshuffling Epoch: 231 2.95462 cross_bits=2.9752 objective=0.801388 new best Epoch: 232 2.9544 cross_bits=2.97503 objective=0.801769 new best Epoch: 233 2.95418 cross_bits=2.97485 objective=0.801873 new best Epoch: 234 2.95397 cross_bits=2.97467 objective=0.802182 new best Epoch: 235 2.95375 cross_bits=2.97449 objective=0.802367 new best Epoch: 236 2.95354 cross_bits=2.97432 objective=0.802664 new best Epoch: 237 2.95333 cross_bits=2.97415 objective=0.80272 new best Epoch: 238 2.95313 cross_bits=2.97399 objective=0.803013 new best Epoch: 239 2.95293 cross_bits=2.97383 objective=0.803171 new best Epoch: 240 2.95273 cross_bits=2.97367 objective=0.803266 new best Epoch: 241 2.95254 cross_bits=2.97351 objective=0.803509 new best, reshuffling Epoch: 242 2.95163 cross_bits=2.97337 objective=0.803179 worse network accepted, reshuffling Epoch: 243 2.9521 cross_bits=2.97331 objective=0.803222 improvement accepted Epoch: 244 2.95193 cross_bits=2.97316 objective=0.803425 improvement accepted, reshuffling Epoch: 245 2.95132 cross_bits=2.97534 objective=0.799831 worse network accepted, reshuffling Epoch: 246 2.95142 cross_bits=2.97536 objective=0.802018 improvement accepted Epoch: 247 2.95142 cross_bits=2.97522 objective=0.802374 improvement accepted, reshuffling Epoch: 248 2.95099 cross_bits=2.97272 objective=0.804416 new best Epoch: 249 2.95069 cross_bits=2.97263 objective=0.804448 new best Epoch: 250 2.95053 cross_bits=2.97252 objective=0.804539 new best Epoch: 251 2.95037 cross_bits=2.9724 objective=0.804757 new best Epoch: 252 2.95021 cross_bits=2.97229 objective=0.804931 new best Epoch: 253 2.95005 cross_bits=2.97217 objective=0.805147 new best Epoch: 254 2.94989 cross_bits=2.97206 objective=0.805269 new best, reshuffling Epoch: 255 2.94973 cross_bits=2.97175 objective=0.80571 new best Epoch: 256 2.94962 cross_bits=2.97166 objective=0.805961 new best Epoch: 257 2.94948 cross_bits=2.97156 objective=0.806114 new best Epoch: 258 2.94934 cross_bits=2.97145 objective=0.80618 new best Epoch: 259 2.94919 cross_bits=2.97134 objective=0.806191 new best Epoch: 260 2.94905 cross_bits=2.97124 objective=0.806147 worse network accepted, reshuffling Epoch: 261 2.94847 cross_bits=2.97403 objective=0.80251 worse network accepted, reshuffling Epoch: 262 2.94878 cross_bits=2.97252 objective=0.805 improvement accepted, reshuffling Epoch: 263 2.94907 cross_bits=2.97186 objective=0.806062 improvement accepted Epoch: 264 2.94893 cross_bits=2.97175 objective=0.806436 new best Epoch: 265 2.94879 cross_bits=2.97164 objective=0.806611 new best Epoch: 266 2.94865 cross_bits=2.97153 objective=0.806722 new best Epoch: 267 2.94852 cross_bits=2.97143 objective=0.806748 new best Epoch: 268 2.94839 cross_bits=2.97133 objective=0.807021 new best Epoch: 269 2.94825 cross_bits=2.97123 objective=0.807258 new best Epoch: 270 2.94812 cross_bits=2.97113 objective=0.807267 new best # Network initialization done # command:# ReportNeuralNet networks/dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-near-backbone-11-from-empty.net ok. # Network initialization done # Neural network printed. # command:CPU_time= 16721.3 sec, elapsed time= 16856 sec) # command:# Network initialization done # command:# Training Net with 50 estimation cycles. Epoch: 271 2.94828 cross_bits=2.97135 objective=0.805453 worse network accepted, reshuffling Epoch: 272 2.94805 cross_bits=2.97057 objective=0.807391 new best Epoch: 273 2.94793 cross_bits=2.97051 objective=0.807438 new best Epoch: 274 2.94781 cross_bits=2.97045 objective=0.807628 new best Epoch: 275 2.94769 cross_bits=2.97037 objective=0.807662 new best Epoch: 276 2.94758 cross_bits=2.9703 objective=0.807882 new best Epoch: 277 2.94746 cross_bits=2.97023 objective=0.807915 new best Epoch: 278 2.94734 cross_bits=2.97016 objective=0.808107 new best Epoch: 279 2.94723 cross_bits=2.97009 objective=0.808313 new best Epoch: 280 2.94711 cross_bits=2.97002 objective=0.808425 new best Epoch: 281 2.947 cross_bits=2.96995 objective=0.808558 new best Epoch: 282 2.94689 cross_bits=2.96988 objective=0.808628 new best Epoch: 283 2.94678 cross_bits=2.96981 objective=0.808711 new best Epoch: 284 2.94667 cross_bits=2.96975 objective=0.808846 new best Epoch: 285 2.94657 cross_bits=2.96968 objective=0.808816 worse network accepted, reshuffling Epoch: 286 2.9465 cross_bits=2.96966 objective=0.808719 worse network accepted, reshuffling Epoch: 287 2.94629 cross_bits=2.97024 objective=0.808215 worse network accepted, reshuffling Epoch: 288 2.94651 cross_bits=2.96936 objective=0.808863 new best, reshuffling Epoch: 289 2.94625 cross_bits=2.96954 objective=0.808265 worse network accepted, reshuffling Epoch: 290 2.94595 cross_bits=2.9728 objective=0.804129 worse network accepted, reshuffling Epoch: 291 2.94564 cross_bits=2.96892 objective=0.809868 new best Epoch: 292 2.94571 cross_bits=2.96886 objective=0.809855 worse network accepted, reshuffling Epoch: 293 2.94607 cross_bits=2.96864 objective=0.810234 new best Epoch: 294 2.94599 cross_bits=2.96859 objective=0.810471 new best, reshuffling Epoch: 295 2.9455 cross_bits=2.96853 objective=0.810107 worse network accepted, reshuffling Epoch: 296 2.94492 cross_bits=2.97395 objective=0.803341 worse network accepted, reshuffling Epoch: 297 2.94555 cross_bits=2.96978 objective=0.808561 improvement accepted Epoch: 298 2.94558 cross_bits=2.96971 objective=0.808461 worse network accepted, reshuffling Epoch: 299 2.94531 cross_bits=2.96899 objective=0.809668 improvement accepted, reshuffling Epoch: 300 2.94534 cross_bits=2.96925 objective=0.809193 worse network accepted, reshuffling Epoch: 301 2.94496 cross_bits=2.96816 objective=0.810915 new best Epoch: 302 2.94483 cross_bits=2.9681 objective=0.810953 new best Epoch: 303 2.94475 cross_bits=2.96804 objective=0.811079 new best Epoch: 304 2.94466 cross_bits=2.96799 objective=0.811097 new best Epoch: 305 2.94458 cross_bits=2.96793 objective=0.811246 new best Epoch: 306 2.9445 cross_bits=2.96788 objective=0.81128 new best Epoch: 307 2.94442 cross_bits=2.96783 objective=0.81126 worse network accepted, reshuffling Epoch: 308 2.9445 cross_bits=2.96761 objective=0.811357 new best Epoch: 309 2.94439 cross_bits=2.96755 objective=0.81149 new best Epoch: 310 2.94431 cross_bits=2.96751 objective=0.811621 new best Epoch: 311 2.94424 cross_bits=2.96747 objective=0.811619 worse network accepted, reshuffling Epoch: 312 2.94401 cross_bits=2.96943 objective=0.808914 worse network accepted, reshuffling Epoch: 313 2.94442 cross_bits=2.96756 objective=0.811605 improvement accepted Epoch: 314 2.94436 cross_bits=2.96752 objective=0.811585 worse network accepted, reshuffling Epoch: 315 2.94373 cross_bits=2.96786 objective=0.811546 worse network accepted, reshuffling Epoch: 316 2.94371 cross_bits=2.97012 objective=0.808322 worse network accepted, reshuffling Epoch: 317 2.94365 cross_bits=2.96754 objective=0.811354 improvement accepted Epoch: 318 2.94352 cross_bits=2.96749 objective=0.811249 worse network accepted, reshuffling Epoch: 319 2.94382 cross_bits=2.96777 objective=0.811308 improvement accepted Epoch: 320 2.94375 cross_bits=2.96773 objective=0.811394 reset to old best (0.811621), reshuffling # Network initialization done # command:# ReportNeuralNet networks/dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-near-backbone-11-from-empty.net ok. # Network initialization done # Neural network printed. # command:CPU_time= 19536.9 sec, elapsed time= 19672.6 sec) # command:# ReportNetQualityForTestTo quality-reports/dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-near-backbone-11-from-empty.test ok. # command:# Testing net dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-near-backbone-11-from-empty.net # Network initialization done # command:# ReportTrainByChain given with no output file. # command:# ReportQvsPhatTo given with no output file. # command:# ReportUnitUsageTo given with no output file. # command:CPU_time= 19600.7 sec, elapsed time= 19736.5 sec) # command: