[woof:gamma-2> make TXXALIGN=t04-thin90 run-tAcB
/projects/compbio/experiments/models.97/scripts/para-trickle-make  -rmvdir -quick 'predict-2nd < 
run-scripts/dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t1c2-gamma_2-from-empty.script >& 
logs/t04-thin90-IDGaaH13-3-13-7-13-9-13-11-T1C2.log'
para-trickle-make: -terse    option suppresses most messages.
para-trickle-make: -verbose  option generates  more messages.
para-trickle-make: -help     option gives the full usage menu.
para-trickle-make: Created joblist. See 
/projects/compbio/tmp/para-trickle-make-farm-bbarnes-7379-54980950/README for more info.

/projects/compbio/experiments/models.97/scripts/para-trickle-make  -rmvdir -quick 'predict-2nd < 
run-scripts/dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-gamma_2-from-empty.script >& 
logs/t04-thin90-IDGaaH13-3-13-7-13-9-13-11-T2C3.log'
para-trickle-make: -terse    option suppresses most messages.
para-trickle-make: -verbose  option generates  more messages.
para-trickle-make: -help     option gives the full usage menu.
para-trickle-make: Created joblist. See 
/projects/compbio/tmp/para-trickle-make-farm-bbarnes-7396-13506241/README for more info.

/projects/compbio/experiments/models.97/scripts/para-trickle-make  -rmvdir -quick 'predict-2nd < 
run-scripts/dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-gamma_2-from-empty.script >& 
logs/t04-thin90-IDGaaH13-3-13-7-13-9-13-11-T3C1.log'
para-trickle-make: -terse    option suppresses most messages.
para-trickle-make: -verbose  option generates  more messages.
para-trickle-make: -help     option gives the full usage menu.
para-trickle-make: Created joblist. See 
/projects/compbio/tmp/para-trickle-make-farm-bbarnes-7414-28907784/README for more info.

CLUSTER DIED

[woof:gamma-2> make TXXALIGN=t04-thin90 run-tAcB
/projects/compbio/experiments/models.97/scripts/para-trickle-make  -rmvdir -quick 'predict-2nd < 
run-scripts/dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t1c2-gamma_2-from-empty.script >& 
logs/t04-thin90-IDGaaH13-3-13-7-13-9-13-11-T1C2.log'
para-trickle-make: -terse    option suppresses most messages.
para-trickle-make: -verbose  option generates  more messages.
para-trickle-make: -help     option gives the full usage menu.
para-trickle-make: Created joblist. See 
/projects/compbio/tmp/para-trickle-make-farm-bbarnes-19460-56486389/README for more info.
/projects/compbio/experiments/models.97/scripts/para-trickle-make  -rmvdir -quick 'predict-2nd < 
run-scripts/dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-gamma_2-from-empty.script >& 
logs/t04-thin90-IDGaaH13-3-13-7-13-9-13-11-T2C3.log'
para-trickle-make: -terse    option suppresses most messages.
para-trickle-make: -verbose  option generates  more messages.
para-trickle-make: -help     option gives the full usage menu.
para-trickle-make: Created joblist. See 
/projects/compbio/tmp/para-trickle-make-farm-bbarnes-19475-55311797/README for more info.
/projects/compbio/experiments/models.97/scripts/para-trickle-make  -rmvdir -quick 'predict-2nd < 
run-scripts/dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-gamma_2-from-empty.script >& 
logs/t04-thin90-IDGaaH13-3-13-7-13-9-13-11-T3C1.log'
para-trickle-make: -terse    option suppresses most messages.
para-trickle-make: -verbose  option generates  more messages.
para-trickle-make: -help     option gives the full usage menu.
para-trickle-make: Created joblist. See 
/projects/compbio/tmp/para-trickle-make-farm-bbarnes-19488-45396916/README for more info.

Problem with predict-2nd not being found, lets try agian

[woof:gamma-2> make TXXALIGN=t04-thin90 run-tAcB
/projects/compbio/experiments/models.97/scripts/para-trickle-make  -rmvdir -quick 'predict-2nd < 
run-scripts/dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t1c2-gamma_2-from-empty.script >& 
logs/t04-thin90-IDGaaH13-3-13-7-13-9-13-11-T1C2.log'
para-trickle-make: -terse    option suppresses most messages.
para-trickle-make: -verbose  option generates  more messages.
para-trickle-make: -help     option gives the full usage menu.
para-trickle-make: Created joblist. See 
/projects/compbio/tmp/para-trickle-make-farm-bbarnes-20131-34406349/README for more info.
/projects/compbio/experiments/models.97/scripts/para-trickle-make  -rmvdir -quick 'predict-2nd < 
run-scripts/dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-gamma_2-from-empty.script >& 
logs/t04-thin90-IDGaaH13-3-13-7-13-9-13-11-T2C3.log'
para-trickle-make: -terse    option suppresses most messages.
para-trickle-make: -verbose  option generates  more messages.
para-trickle-make: -help     option gives the full usage menu.
para-trickle-make: Created joblist. See 
/projects/compbio/tmp/para-trickle-make-farm-bbarnes-20148-91910126/README for more info.
/projects/compbio/experiments/models.97/scripts/para-trickle-make  -rmvdir -quick 'predict-2nd < 
run-scripts/dunbrack-30pc-1763-t04-thin90-IDGaaH13-3-13-7-13-9-13-11-t3c1-gamma_2-from-empty.script >& 
logs/t04-thin90-IDGaaH13-3-13-7-13-9-13-11-T3C1.log'
para-trickle-make: -terse    option suppresses most messages.
para-trickle-make: -verbose  option generates  more messages.
para-trickle-make: -help     option gives the full usage menu.
para-trickle-make: Created joblist. See 
/projects/compbio/tmp/para-trickle-make-farm-bbarnes-20161-82082791/README for more info.