# this is the sample for the aa alphabet directory.
# when you copy to a new directory, change these values.
ALPHANAME = aa
ALPHADIR  = dssp_rev
# watch out for this one. some files contain several alphabets.
# for example, str,str2,str3 are all defined in str.alphabet
# alphalibfile indicates the output alphabet ??
ALPHALIBFILE = DSSP.alphabet

#This is for running the results for the predict-2nd paper.
ARCHITECTURE = Gdssp-3-8-5-8-5-8-7
TXXALIGN = dssp

#To test my version of predict-2nd 
#PREDICT-2ND = /cse/ugrads/rbingham/private/predict-2nd/bin/i686/opt/predict-2nd

nrm:
	rm -r *n* logs/ quality-reports/

include ../Make.alphabet