InFilePrefix  /cse/faculty/karplus/dna/predict-2nd/testing/
OutFilePrefix /cse/faculty/karplus/dna/predict-2nd/testing/

ReadNeuralNet dssp/networks/dunbrack-in-scop-IDaa13-7-10-9-10-9-ebghstl-seeded-dssp-trained2.net
NameNet dunbrack-in-scop-IDaa13-7-10-9-10-9-ebghstl-seeded-dssp-trained3.net

ReadParams params/2-feb-00-fast
SetOverhang


# Note: the following includes read the training set(s),
# and, in doing so, reset the InFilePrefix

ReadToSet train
InFilePrefix  /cse/faculty/karplus/dna/predict-2nd/testing/training-data/
Include dunbrack-in-scop.t2k-thin90-dssp

ReportNetQualityForCrossTrainTo dssp/quality-reports/dunbrack-in-scop-IDaa13-7-10-9-10-9-ebghstl-seeded-dssp-trained3.quality

TrainNet 30
ReportNeuralNet dssp/networks/dunbrack-in-scop-IDaa13-7-10-9-10-9-ebghstl-seeded-dssp-trained3.net

TrainNet 30
ReportNeuralNet dssp/networks/dunbrack-in-scop-IDaa13-7-10-9-10-9-ebghstl-seeded-dssp-trained3.net

TrainNet 30
ReportNeuralNet dssp/networks/dunbrack-in-scop-IDaa13-7-10-9-10-9-ebghstl-seeded-dssp-trained3.net

TrainNet 30
ReportNeuralNet dssp/networks/dunbrack-in-scop-IDaa13-7-10-9-10-9-ebghstl-seeded-dssp-trained3.net

TrainNet 30
ReportNeuralNet dssp/networks/dunbrack-in-scop-IDaa13-7-10-9-10-9-ebghstl-seeded-dssp-trained3.net

TrainNet 30
ReportNeuralNet dssp/networks/dunbrack-in-scop-IDaa13-7-10-9-10-9-ebghstl-seeded-dssp-trained3.net

TrainNet 30
ReportNeuralNet dssp/networks/dunbrack-in-scop-IDaa13-7-10-9-10-9-ebghstl-seeded-dssp-trained3.net

TrainNet 30
ReportNeuralNet dssp/networks/dunbrack-in-scop-IDaa13-7-10-9-10-9-ebghstl-seeded-dssp-trained3.net

TrainNet 30
ReportNeuralNet dssp/networks/dunbrack-in-scop-IDaa13-7-10-9-10-9-ebghstl-seeded-dssp-trained3.net

TrainNet 30
ReportNeuralNet dssp/networks/dunbrack-in-scop-IDaa13-7-10-9-10-9-ebghstl-seeded-dssp-trained3.net

ReportQvsPhatTo dssp/quality-reports/dunbrack-in-scop-IDaa13-7-10-9-10-9-ebghstl-seeded-dssp-trained3.q-vs-phat
ReportUnitUsageTo dssp/quality-reports/dunbrack-in-scop-IDaa13-7-10-9-10-9-ebghstl-seeded-dssp-trained3.unit-usage
TestNet
ReportTrainByChain dssp/quality-reports/dunbrack-in-scop-IDaa13-7-10-9-10-9-ebghstl-seeded-dssp-trained3.by-chain