InFilePrefix  /cse/faculty/karplus/dna/predict-2nd/testing/
OutFilePrefix /cse/faculty/karplus/dna/predict-2nd/testing/dssp-ehl/

ReadNeuralNet dssp-ehl/networks/IDaaHr-5-15-7-15-9-15-13-ehl2-empty.net
NameNet t2k-5651-IDaaHr-5-15-7-15-9-15-13-ehl2-dssp-from-empty.net

ReadParams params/16-dec-01-anneal
SetOverhang


# Note: the following includes read the training set(s),
# and, in doing so, reset the InFilePrefix

ReadToSet train
InFilePrefix  /cse/faculty/karplus/dna/predict-2nd/testing/training-data/
Include t2k-5651.t2k-thin90-dssp-ehl2


# ReportNetQualityForTrainTo quality-reports/t2k-5651-IDaaHr-5-15-7-15-9-15-13-ehl2-dssp-from-empty.train
ReportNetQualityForCrossTrainTo quality-reports/t2k-5651-IDaaHr-5-15-7-15-9-15-13-ehl2-dssp-from-empty.train

TrainNet 5
ReportNeuralNet networks/t2k-5651-IDaaHr-5-15-7-15-9-15-13-ehl2-dssp-from-empty.net

CenterWeights
Equilibrate
TrainNet 5
ReportNeuralNet networks/t2k-5651-IDaaHr-5-15-7-15-9-15-13-ehl2-dssp-from-empty.net

CenterWeights
Equilibrate
TrainNet 5
ReportNeuralNet networks/t2k-5651-IDaaHr-5-15-7-15-9-15-13-ehl2-dssp-from-empty.net

CenterWeights
Equilibrate
TrainNet 5
ReportNeuralNet networks/t2k-5651-IDaaHr-5-15-7-15-9-15-13-ehl2-dssp-from-empty.net

CenterWeights
Equilibrate
TrainNet 50
ReportNeuralNet networks/t2k-5651-IDaaHr-5-15-7-15-9-15-13-ehl2-dssp-from-empty.net

CenterWeights
TrainNet 50
ReportNeuralNet networks/t2k-5651-IDaaHr-5-15-7-15-9-15-13-ehl2-dssp-from-empty.net

CenterWeights
TrainNet 50
ReportNeuralNet networks/t2k-5651-IDaaHr-5-15-7-15-9-15-13-ehl2-dssp-from-empty.net


ReportNetQualityForTestTo quality-reports/t2k-5651-IDaaHr-5-15-7-15-9-15-13-ehl2-dssp-from-empty.test
TestNet
ReportTrainByChain
ReportQvsPhatTo 
ReportUnitUsageTo